RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5094
(251 letters)
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 257 bits (657), Expect = 2e-87
Identities = 173/234 (73%), Positives = 198/234 (84%), Gaps = 1/234 (0%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDRGVNTFSPEGRLFQVEY IEAIKLGSTAIGI TSEGV LA EKRITS LMEPSSI+KI
Sbjct: 1 YDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 60
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
VEID HIGCA SGLIAD++ L D+ARVE NHWFTY+E M +ESV QAVSNLA+QFG+ D
Sbjct: 61 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 120
Query: 128 -EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE 186
+ AMSRPFGVA+LF G+D KGPQLFH+DPSGT+ Q DA+AIGS SEGAQ SLQE+YH+
Sbjct: 121 ADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHK 180
Query: 187 SMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKV 240
SMTLKEAI L ILKQVMEEKLN+TN+EL TV + +H+++KEELEE + +
Sbjct: 181 SMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 234
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 229 bits (585), Expect = 3e-76
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 7/237 (2%)
Query: 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIK 65
+ YD +TFSP+GR+FQVEYA++A++ STAIGI +GVV EK + S L E S K
Sbjct: 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD 125
++ +D+H+G A +GL+AD+R L D AR E +N + + ++ +A V+ +
Sbjct: 65 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYT- 123
Query: 126 SDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+ RPFG + + QL+ +DPSG + AIG + A+ ++++
Sbjct: 124 ---LYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180
Query: 185 HESMTLKEAINHVLTILKQVMEE-KLNSTNVELCTVTAD-KMYHLYSKEELEEELSK 239
+ MT ++ + V I+ V +E K + +EL V H +++ EE K
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK 237
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 228 bits (583), Expect = 3e-76
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 11/236 (4%)
Query: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSI 64
R+ YD TFSP GRLFQVEYA+EAIK GS +G+ ++ VL A KR L S
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQ 59
Query: 65 KKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFG 124
KKI++ D+H+G + +GL D+R+L++ R +C ++ K+ +E + + A +
Sbjct: 60 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKN- 118
Query: 125 DSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+S RP+GV +L G D G L PSG T+ AIG+ S+GA+ L+
Sbjct: 119 ---TQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 175
Query: 185 HES----MTLKEAINHVLTILKQVM-EEKLNSTNVELCTVTADKMYHLYSKEELEE 235
E I + + Q + +E L N+ + V D + +Y E + +
Sbjct: 176 DTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAK 231
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 228 bits (583), Expect = 4e-76
Identities = 136/236 (57%), Positives = 173/236 (73%), Gaps = 3/236 (1%)
Query: 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIV 68
DRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E SI+KIV
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 69 EIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD--S 126
EID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA++FG+ S
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 127 DEESAMSRPFGVAMLFAGLDSKGP-QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
EE MSRPFGVA+L AG D+ QLFH +PSGT+ +++AKAIGSGSEGAQ L +H
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180
Query: 186 ESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKVS 241
S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y E+ E + ++
Sbjct: 181 SSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELK 236
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 225 bits (575), Expect = 8e-75
Identities = 66/243 (27%), Positives = 132/243 (54%), Gaps = 9/243 (3%)
Query: 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGISTSEGVVLAAEKRITSVLMEPS 62
+ + +DR + FSPEGRL+QVEYA +AI G T++ + + V+ +K++ L++ S
Sbjct: 4 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSS 63
Query: 63 SIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQ 122
++ + +I ++IGC +G+ ADSR RAR E AN + Y ++ ++ + + +++++
Sbjct: 64 TVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 123
Query: 123 FGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQ 181
+ ++A RP G M+ G+D +GPQ++ DP+G Y F A A G + L+
Sbjct: 124 YT----QNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 179
Query: 182 EVYHES--MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADK-MYHLYSKEELEEELS 238
+ + T ++ + +T L V+ + +E+ VT + + + ++ E++ L
Sbjct: 180 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 239
Query: 239 KVS 241
++
Sbjct: 240 ALA 242
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 221 bits (565), Expect = 2e-73
Identities = 91/235 (38%), Positives = 144/235 (61%), Gaps = 6/235 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+GRLFQVEYA EA+K G+TAIGI EGV+L A+KR+ S L+E +I+KI
Sbjct: 5 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKI 64
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+ID+HI A SGL+AD+R+L DRAR+E + TYD + ++ +A+ + + Q+
Sbjct: 65 YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQY---- 120
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+ RPFGV++L AG ++ P+L+ DPSG ++ A AIG G + ++ Y +
Sbjct: 121 TQYGGVRPFGVSLLIAG-VNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDD 179
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD-KMYHLYSKEELEEELSKVS 241
++ +A+ L + +E +L N+E+ V D + + S EEL+ + + +
Sbjct: 180 LSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERAN 234
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 221 bits (563), Expect = 4e-73
Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKK 66
+YD V +SP+GR+ Q+EYA+EA+K GS +G+ + VL A KR S L KK
Sbjct: 2 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KK 59
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
I+ +D HIG + +GL AD+R+L + R EC + F +D + + + + +
Sbjct: 60 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT-- 117
Query: 127 DEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE 186
+ RP+GV +L AG D GP +F PS Y A +IG+ S+ A+ L+ E
Sbjct: 118 --QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 175
Query: 187 SM--TLKEAINHVLTILKQVM--EEKLNSTNVELCTVTADKMYHLYSKEELEEELSKVS 241
M L E + H L L++ + E+ L + NV + V D + +Y +++ L +
Sbjct: 176 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 234
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 221 bits (563), Expect = 5e-73
Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 10/240 (4%)
Query: 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIK 65
+ YD + FSP+GR FQVEYA++A++ G+T+IGI ++GVV A EK ITS L+ P
Sbjct: 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 61
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD 125
KI +D+HIGC SGLI D R L +R R E A+ Y + I + A +
Sbjct: 62 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAH-- 119
Query: 126 SDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV-- 183
RPFGV+ +F G+D G L+ L+PSG+Y + A G G + A+ L+++
Sbjct: 120 --TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVD 177
Query: 184 -YHESMTLKEAINHVLTILKQVMEE-KLNSTNVELCTVTAD--KMYHLYSKEELEEELSK 239
+ E ++ +EA+ I+ E+ K +E+ + H + K +L +E
Sbjct: 178 HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAID 237
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 219 bits (558), Expect = 1e-72
Identities = 87/222 (39%), Positives = 139/222 (62%), Gaps = 4/222 (1%)
Query: 14 TFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKH 73
FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI ID +
Sbjct: 2 VFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDY 61
Query: 74 IGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMS 133
+ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+ +
Sbjct: 62 VAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYT----QYGGV 117
Query: 134 RPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193
RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E++ KEA
Sbjct: 118 RPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEA 177
Query: 194 INHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEE 235
+ + LK +EE E+ ++T Y +Y +EE+++
Sbjct: 178 VTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKK 219
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 214 bits (546), Expect = 1e-70
Identities = 80/239 (33%), Positives = 139/239 (58%), Gaps = 12/239 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPS-SIKK 66
YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+ VVL E+R T L + + K
Sbjct: 2 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
+ +ID H+ + SGL ADSRIL ++ARVE +H T ++ + +E + + V+ + ++
Sbjct: 62 VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY--- 118
Query: 127 DEESAMSRPFGVAMLFAGLDSK--GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+S RPFGV+ L AG D + P+L+ +PSG Y+ + A+ IG S+ ++ L++ Y
Sbjct: 119 -TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY 177
Query: 185 HE---SMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKV 240
T++E + + L +V++ + N+E+ V D S EE+ + ++++
Sbjct: 178 DRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQI 234
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 213 bits (544), Expect = 4e-70
Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 21/252 (8%)
Query: 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIK 65
Y + TFSP G+L Q++YA+ A+K G T++GI + GVV+A EK+ +S L ++
Sbjct: 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECA-NHWFTYDEKMDIESVAQAVSNLAIQFG 124
K+ + IG SG+ D R+L D++R ++ Y E + + V+ + +
Sbjct: 63 KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEA- 121
Query: 125 DSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV 183
+S RPFGV++L AG D G L+ +DPSG+Y + A AIG GS A+ L++
Sbjct: 122 ---TQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKR 178
Query: 184 YHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADK---------------MYHLY 228
+++ + L++AI+ L LK+ +E + N +EL + + +
Sbjct: 179 WNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238
Query: 229 SKEELEEELSKV 240
+ +E+ + L +
Sbjct: 239 TSQEINDRLEAL 250
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 213 bits (543), Expect = 5e-70
Identities = 82/236 (34%), Positives = 141/236 (59%), Gaps = 9/236 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G+ + VVL EK+ + L + +++KI
Sbjct: 2 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 61
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D ++ A +GL AD+RI+ +RARVEC +H T ++ + +E + + +++L ++
Sbjct: 62 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY---- 117
Query: 128 EESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE 186
+S RPFG++ L G D P+L+ DPSGTY + A AIG G++ ++ L++ Y +
Sbjct: 118 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 177
Query: 187 SMTL--KEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKV 240
I V+ L +V++ N+EL + D+ + + EE+E+ ++++
Sbjct: 178 EAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 231
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 213 bits (542), Expect = 9e-70
Identities = 80/240 (33%), Positives = 136/240 (56%), Gaps = 11/240 (4%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSS-IKK 66
YD FSPEGRL+QVEYA+EAI T +GI ++GV+LAAE+R L++ +K
Sbjct: 4 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 63
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
I ++++ + C+ +G+ +D+ +LT+ R+ + Y E + E + A+ ++ +
Sbjct: 64 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT-- 121
Query: 127 DEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
+ RPFGV++L+ G D G QL+ DPSG Y + A IG+ S A L++ Y
Sbjct: 122 --QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 179
Query: 186 ES-MTLKEAINHVLTILKQVME-EKLNSTNVELCTVTAD---KMYHLYSKEELEEELSKV 240
E MTLK A+ + +L + M+ KL++ VE+ T+T + + + ++E+E+ + K
Sbjct: 180 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 239
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 212 bits (540), Expect = 1e-69
Identities = 65/243 (26%), Positives = 123/243 (50%), Gaps = 14/243 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKK 66
YDR + FSPEGRL+QVEYA +A ++ + + V+ ++K++ L++P+++
Sbjct: 3 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
I I + IG +G I D+R RA+ E A + Y M + +A+ ++NL+ +
Sbjct: 63 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT-- 120
Query: 127 DEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
+ A RP GV + F +D + GP ++ DP+G Y + A A G + +L+ +
Sbjct: 121 --QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFK 178
Query: 186 ESM-------TLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELS 238
+S + ++ + +T + + + + ++E+ T DK + S E +EE L
Sbjct: 179 KSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTLSAENIEERLV 237
Query: 239 KVS 241
++
Sbjct: 238 AIA 240
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 207 bits (527), Expect = 9e-68
Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 5/234 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
Y + TFSP G+L Q+EYA+ A+ G+ ++GI + GVVLA EK+ S+L + S+ K+
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
I KHIG SG+ D R+L RAR ++ Y E + + Q V+++ ++
Sbjct: 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY---- 120
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+S RPFGV++L G + P LF DPSG Y + A A+G + L++ Y+E
Sbjct: 121 TQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED 180
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKVS 241
+ L++AI+ + LK+ E ++ N+E+ + + E+++ L+ ++
Sbjct: 181 LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG-FRRLTPTEVKDYLAAIA 233
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 204 bits (521), Expect = 9e-67
Identities = 82/240 (34%), Positives = 136/240 (56%), Gaps = 12/240 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSS-IKK 66
YD FSPEGRL+QVEYA+E+I TAIGI S+G+VLAAE+++TS L+E + +K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 64
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
+ +++ I A +GL AD+ IL + AR+ N+ TY+E + +E + + +S++ +
Sbjct: 65 LYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT-- 122
Query: 127 DEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
+ RPFGV+ ++AG D + QL+ +PSG YT + A ++G+ + AQ LQ Y
Sbjct: 123 --QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK 180
Query: 186 ESMTLKEAINHVLTILKQVMEE-KLNSTNVELCTVTAD-----KMYHLYSKEELEEELSK 239
+ M + +AI L L + + L +E T+ ++ +E+++ L K
Sbjct: 181 DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 169 bits (430), Expect = 3e-53
Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 24/229 (10%)
Query: 23 QVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLI 82
+ E A + I G + + ++ +GV+ AE T++ K+ E+ +G AA G
Sbjct: 8 RSELARKGIARGRSVVVLTFRDGVLFVAENPSTAL-------HKVSELYDRLGFAAVGKY 60
Query: 83 ADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLF 142
+ L V ++YD + ++++N Q + +P+ V +
Sbjct: 61 NEFENLRRAGIVHADMRGYSYD---RRDVTGRSLANAYAQTLGTIFTEQP-KPYEVEICV 116
Query: 143 AGLDS----KGPQLFHLDPSGTYTQFDAKAIG-SGSEGAQQSLQEVYHESMTLKEAINHV 197
A + K PQL+ + G+ + +E +++E Y + L+ A+
Sbjct: 117 AEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIA 176
Query: 198 LTILKQVMEE-----KLNSTNVELCTVTAD---KMYHLYSKEELEEELS 238
+ L+Q ++ ++E+ + + + + LE+ +
Sbjct: 177 VNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP 225
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 139 bits (351), Expect = 1e-41
Identities = 40/208 (19%), Positives = 86/208 (41%), Gaps = 11/208 (5%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T + GV++AA+ R T+ + ++KK++EI+ ++ +G AD
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
+C + E++ + + ++ ++N+ Q+ + + G D +GP L++
Sbjct: 62 QCRIYELRNKERISVAAASKLLANMVYQY--------KGMGLSMGTMICGWDKRGPGLYY 113
Query: 155 LDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEE-KLNSTN 213
+D G ++GSGS A + Y + +++A + + Q +
Sbjct: 114 VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGA 173
Query: 214 VELCTVTADKMYHLYSKEELEEELSKVS 241
V L V D + S + + + K S
Sbjct: 174 VNLYHVREDG-WIRVSSDNVADLHEKYS 200
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 138 bits (348), Expect = 4e-41
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 14/219 (6%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T +G+ + GVV+AA+ R T ++ + K+ I I CA +G AD+ +T
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
H + + S Q + + G ++ AG+D G LF
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLFK---------YQGHIGAYLIVAGVDPTGSHLFS 112
Query: 155 LDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVL-TILKQVMEEKLNSTN 213
+ G+ ++GSGS A L+ + + +T +EAI I + + + +N
Sbjct: 113 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 172
Query: 214 VELCTVTADK---MYHLYSKEELEEELSKVSSIHDPTRP 249
V++C + K Y + EE K T
Sbjct: 173 VDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 136 bits (342), Expect = 2e-40
Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 12/208 (5%)
Query: 36 TAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T +G+ +GVV+A EKR T + + KKI +I + +G + D++ L ++
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
E + + K + ++A SN S P+ V +L G+DS+G ++
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSN--------LLNSYRYFPYLVQLLIGGIDSEGKSIYS 113
Query: 155 LDPSGTYTQF-DAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME-EKLNST 212
+DP G + D A GSGS A L++ + + + EA+ + + M+ + +
Sbjct: 114 IDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGD 173
Query: 213 NVELCTVTADKMYHLYSKEELEEELSKV 240
+++ +T D+ ++ YS EE+E+ L+K
Sbjct: 174 GIDVVKITEDE-FYQYSPEEVEQILAKF 200
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 136 bits (344), Expect = 3e-40
Identities = 35/216 (16%), Positives = 84/216 (38%), Gaps = 9/216 (4%)
Query: 29 EAIKLGSTAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87
+ I G++ I + GV++AA+ + L+ + +++++ + + SG I+D +
Sbjct: 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62
Query: 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS 147
+ + + + E++ + + S M P A++ AG+ S
Sbjct: 63 IERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKM-NPLWNAIIVAGVQS 121
Query: 148 KGP-QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE-----SMTLKEAINHVLTIL 201
G L +++ G A G G+ A L++V T++ A ++ +
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181
Query: 202 KQVME-EKLNSTNVELCTVTADKMYHLYSKEELEEE 236
+ + + +S N L + + ++E
Sbjct: 182 RVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 217
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 134 bits (338), Expect = 1e-39
Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 11/207 (5%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T +GI+ + V++A E+R+T + + KK+ +ID + G +GL+ D+++L +
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
E + M IE+VA +SN+ Q P+ V +L G+D P +F
Sbjct: 62 ELELYRLQRRVNMPIEAVATLLSNMLNQV--------KYMPYMVQLLVGGID-TAPHVFS 112
Query: 155 LDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME-EKLNSTN 213
+D +G + + GSGS L+ Y E MT+ E ++ V+ + + + +
Sbjct: 113 IDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGM 172
Query: 214 VELCTVTADKMYHLYSKEELEEELSKV 240
+++ +T Y +++E + K+
Sbjct: 173 IDVAVITRKDGYVQLPTDQIESRIRKL 199
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 133 bits (335), Expect = 4e-39
Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
Query: 36 TAIGISTSEGVVLAAEKRITSVLMEPS-SIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T G+ +G+VL A+ R T ++ + KI I +I C +G AD+ + T
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
H + + + + + + + G A++ G+D GP L+
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLKQMLFR---------YRGYIGAALVLGGVDVTGPHLYS 112
Query: 155 LDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVL-TILKQVMEEKLNSTN 213
+ P G+ + +GSGS A ++ + M +EA N V I + + + +N
Sbjct: 113 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSN 172
Query: 214 VELCTVTADKMYHLYSKEELEEELSKVSSIH 244
++LC ++ +K+ L ++ +++
Sbjct: 173 IDLCVISKNKLDFLRPYTVPNKKGTRLGRYR 203
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 132 bits (332), Expect = 9e-39
Identities = 43/209 (20%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T + G+++A + R T+ + ++K+++EI+ + +G AD +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQLF 153
+C H E++ + + ++ +SNL Q+ + + G K GP ++
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQY--------KGAGLSMGTMICGYTRKEGPTIY 113
Query: 154 HLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVL-TILKQVMEEKLNST 212
++D GT + D +GSG A L Y +++++A+ +IL + +
Sbjct: 114 YVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGG 173
Query: 213 NVELCTVTADKMYHLYSKEELEEELSKVS 241
+V L VT D + + ++ E KV
Sbjct: 174 SVNLYHVTEDG-WIYHGNHDVGELFWKVK 201
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 131 bits (330), Expect = 1e-38
Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 13/204 (6%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T + + GVVL A+ R T+ + K+ I I C SG AD++ + D
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLF 153
+ H +E + + A + ++ + ++ AG D +G Q++
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMCYRYRE---------DLMAGIIIAGWDPQEGGQVY 112
Query: 154 HLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS-T 212
+ G + GSGS + Y E MT +E + L ME +S
Sbjct: 113 SVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGG 172
Query: 213 NVELCTVTADKM-YHLYSKEELEE 235
+ L + + + +++ +
Sbjct: 173 VIRLAAIAESGVERQVLLGDQIPK 196
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 127 bits (319), Expect = 6e-37
Identities = 40/209 (19%), Positives = 87/209 (41%), Gaps = 14/209 (6%)
Query: 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILT 89
+ LG++ + ++ +GV+L A+ R T+ + K+ + I C SG AD++ +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 90 DRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK- 148
D + + Y E+ A L + D ++ AG D K
Sbjct: 66 DIVQYHLELYTSQYGTPST-ETAASVFKELCYENKD---------NLTAGIIVAGYDDKN 115
Query: 149 GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEK 208
+++ + G+ + GSGS + + E+M+ +E ++ + L Q ++
Sbjct: 116 KGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWD 175
Query: 209 LNS-TNVELCTVTADKM-YHLYSKEELEE 235
+S + + +TA + ++ +E E+
Sbjct: 176 GSSGGVIRMVVLTAAGVERLIFYPDEYEQ 204
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 124 bits (311), Expect = 2e-35
Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 12/212 (5%)
Query: 29 EAIKLGSTAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87
+ G++ +G+ GVV+AA+ + L +I +I+ ++ ASG AD +
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62
Query: 88 LTDRARVECANHWFTYD-EKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD 146
L + D ++ ++ + P M+ G
Sbjct: 63 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSR------RSKMNPLWNTMVIGGYA 116
Query: 147 SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH--ESMTLKEAINHVLTILKQV 204
L ++D G + + A G G+ AQ L+EV ++ EA + V ++ +
Sbjct: 117 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 176
Query: 205 ME-EKLNSTNVELCTVTADKMYHLYSKEELEE 235
+ + + TVT + E
Sbjct: 177 YYRDARSYNRFQTATVTEKG-VEIEGPLSTET 207
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 123 bits (310), Expect = 3e-35
Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 34 GSTAIGISTSEGVVLAAEKRITSVLM-EPSSIKKIVEIDKHIGCAASGLIADSRILTDRA 92
G T +GI+ + VLA + R + K+ + +I +A+G AD L R
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 93 RVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQ 151
+ + F +++K N A + P+ V + AGLD G
Sbjct: 69 KNSVKWYHFDHNDKK-------LSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH-----------------ESMTLKEAI 194
++ DP G+Y + +A G+ + L + + ++++E I
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 181
Query: 195 NHVLTILKQVMEEKLNS-TNVELCTVTADKM 224
V E + +E+ VT D +
Sbjct: 182 KLVRDSFTSATERHIQVGDGLEILIVTKDGV 212
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 120 bits (301), Expect = 3e-34
Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 11/203 (5%)
Query: 36 TAIGISTSEGVVLAAEKRITSVLMEPS-SIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
+GI + V+LA+ K +T + S K ++ H + +G D+ + +
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK--GPQL 152
+ D ++ ++V+ V + RP+ V +L G D K P+L
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKS------IRSRRPYQVNVLIGGYDKKKNKPEL 116
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME-EKLNS 211
+ +D GT + A G L Y MT +E ++ + ++++ + ++
Sbjct: 117 YQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF 176
Query: 212 TNVELCTVTADKMYHLYSKEELE 234
V + V D + +
Sbjct: 177 KGVIVKIVDKDG-IRQVDDFQAQ 198
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 114 bits (287), Expect = 4e-32
Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 13/195 (6%)
Query: 34 GSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRA 92
G + + V +AA++R + + +KI + + +GL D + + R
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 93 RVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGP-- 150
+ + ++ ++ V+NL + P+ + AGLD K
Sbjct: 67 KFRLNLYELKEGRQIKPYTLMSMVANLLYEK--------RFGPYYTEPVIAGLDPKTFKP 118
Query: 151 QLFHLDPSGTYTQFDAKAIG-SGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME-EK 208
+ LD G D + + +E + ++ +M + + ++ +
Sbjct: 119 FICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDA 178
Query: 209 LNSTNVELCTVTADK 223
++ V + + DK
Sbjct: 179 VSGMGVIVHIIEKDK 193
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 114 bits (287), Expect = 4e-32
Identities = 33/195 (16%), Positives = 75/195 (38%), Gaps = 14/195 (7%)
Query: 34 GSTAIGISTSEGVVLAAEKRITSVLMEPSS-IKKIVEIDKHIGCAASGLIADSRILTDRA 92
G + ++ + V +A + R+ S + S+ +KI H+ +GL D L +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMF 66
Query: 93 RVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG--P 150
R + + + ++ E+ Q VS+ + P+ V + AG++SK P
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYER--------RFGPYFVGPVVAGINSKSGKP 118
Query: 151 QLFHLDPSGTYTQFDAK-AIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME-EK 208
+ D G + G+ S+ + +Y ++ ++ + L + +
Sbjct: 119 FIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDA 178
Query: 209 LNSTNVELCTVTADK 223
L+ + + D+
Sbjct: 179 LSGWGAVVYIIKKDE 193
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 113 bits (283), Expect = 2e-31
Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 13/217 (5%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T + ++ GV+LA ++R T L+ ++K+ D++ +G + L V
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQLF 153
E ++ + + A ++++ + + P V D ++
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 154 HLDPSGTYTQFDAK--AIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS 211
D G + A A+GSGS A+ +L+++Y + A+ + L ++ +
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181
Query: 212 --------TNVELCTVTADKMYHLYSKEELEEELSKV 240
T+T S+E E ++
Sbjct: 182 GGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRI 217
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 106 bits (264), Expect = 8e-29
Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 10/205 (4%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
IGI + V++A+++ S ++ K+ ++ + I G D+ + +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQL 152
+ ++ + A S P+ V +L AG D GP L
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSR------TPYHVNLLLAGYDEHEGPAL 115
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME-EKLNS 211
+++D + A G G+ L Y +++ + A+ + L+++ + LN
Sbjct: 116 YYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNL 175
Query: 212 TNVELCTVTADKMYHLYSKEELEEE 236
+ + + ++ L ++
Sbjct: 176 PTFSVRIIDKNGIHDL-DNISFPKQ 199
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 99.2 bits (246), Expect = 4e-26
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 20/202 (9%)
Query: 34 GSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRA 92
G T + I+ + ++A++ R++ + K ++ SG D LT
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 93 RVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQL 152
+ + ++ M ++A +S + P+ V + GLD +G
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSR--------RFFPYYVYNIIGGLDEEGKGA 120
Query: 153 FH-LDPSGTYTQFDAKAIGSGSEGAQQSL---------QEVYHESMTLKEAINHVLTILK 202
+ DP G+Y + KA GS S Q L Q V H ++L A+ V +
Sbjct: 121 VYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180
Query: 203 QVME-EKLNSTNVELCTVTADK 223
E + + +C VT +
Sbjct: 181 SAAERDVYTGDALRICIVTKEG 202
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 56.7 bits (136), Expect = 1e-10
Identities = 14/163 (8%), Positives = 41/163 (25%), Gaps = 16/163 (9%)
Query: 34 GSTAIGISTSEGVVLAAEKRIT--SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDR 91
+T + ++ + ++T ++ + +K+ ++ A
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 92 ARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQ 151
+ ++ A++ + R ++ +
Sbjct: 65 KFEAKLEEYNGNLKRA------------AVELAKEWRSDKVLRKLEAMLIVM--NQDTLL 110
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAI 194
L AIGSG A + + + + A
Sbjct: 111 LVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSAS 153
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 55.1 bits (132), Expect = 4e-10
Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 16/167 (9%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T + + + V+ + ++T + + +K+ ++ + A +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
W K +E ++ ++ + L D + +
Sbjct: 62 AKLREWGGNLTKAAVELAKDWRTDRVLR--------------RLEALLLVADKENIFIIS 107
Query: 155 LDPSGTYTQFDAKAIGSGSEGAQQSLQ-EVYHESMTLKEAINHVLTI 200
+ DA AIGSG A + + + + ++ +E + +TI
Sbjct: 108 GNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTI 154
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 39.4 bits (91), Expect = 1e-04
Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 14/143 (9%)
Query: 36 TAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
T + + + VV+ + +++ + + +K+ + A
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFH 154
+ K +E ++ + AML + + +
Sbjct: 62 RKLEMHQGHLLKSAVELAKDWRTD-------------RALRKLEAMLIVADEKESLIITG 108
Query: 155 LDPSGTYTQFDAKAIGSGSEGAQ 177
+ + AIGSG A
Sbjct: 109 IGDVVQPEEDQILAIGSGGNYAL 131
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 274
Score = 31.1 bits (70), Expect = 0.090
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 29/154 (18%)
Query: 23 QVEYAIEAIKL----GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAA 78
+V + +K G++ + +E + AE+ S+L + +I ++ E + +
Sbjct: 4 RVLEILREMKRERIKGASWLAKKGAEAFLTLAEELDESLLED--AIMELREEVVKVNPSM 61
Query: 79 SGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGV 138
+ L +R + + + + + A++F EE+ +
Sbjct: 62 ASLYNLAR-------------------FIPVTNRRDILKSRALEFLRRMEEAKRE----L 98
Query: 139 AMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSG 172
A + A L G + S T + A
Sbjct: 99 ASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK 132
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 31.3 bits (69), Expect = 0.11
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 27 AIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVE 69
+ A + I V A+ R + I I
Sbjct: 265 GLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYN 307
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 30.9 bits (69), Expect = 0.11
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 24 VEYAIEAIKL----GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAAS 79
VE +AIK G+ A+ + + G+ LAA +R + + E K A+
Sbjct: 31 VEELADAIKKLAVRGAPALEAAGAYGIALAAREREFADVDELKEHLK----------KAA 80
Query: 80 GLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEES 130
+A +R V + +E V + A + + D E
Sbjct: 81 DFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEEDVER 131
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 30.5 bits (68), Expect = 0.17
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 24 VEYAIEAIKL----GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAAS 79
E AIK G+ AIG++ + G VL + S+ ++ K
Sbjct: 33 HEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRD------YKTGSLTDWMKQVKETLARTR 86
Query: 80 GLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSR-PFGV 138
+ +R + + +E+ A ++ I+ + ++ G
Sbjct: 87 PTAVNLFWALNRMEKVFFENADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIKDGS 146
Query: 139 AML 141
+L
Sbjct: 147 TIL 149
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
[TaxId: 5664]}
Length = 374
Score = 29.7 bits (66), Expect = 0.31
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 24 VEYAIEAIKL----GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAAS 79
VE AIK G+ AI +S + G+ +A +++ + ++ E+ + +
Sbjct: 39 VEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKSGR-----EVQTFLLTSCD 93
Query: 80 GLIADSRILTDR--ARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMS 133
++ + + D VAQA LA +D
Sbjct: 94 FVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEG 149
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 28.5 bits (62), Expect = 0.73
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 30 AIKLGSTAIGISTSEGVVLAAEKRITSV----LMEPSSIKKIVEIDKHIG 75
AI+ G +I + +K++T + L++ + +IVE + G
Sbjct: 225 AIQEGRNSICTDAAPVFKEYYQKQLTFLQDDGLIDKARSYEIVEGAANFG 274
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
isomerase Ypr118W {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 402
Score = 28.3 bits (62), Expect = 0.85
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 24 VEYAIEAIKL----GSTAIGISTSEGVVLAA---EKRITSVLMEPSSIKKIVEIDKHIGC 76
++ IK G+ AI I S V+ + TS + S+ +
Sbjct: 38 IDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNK 97
Query: 77 AASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE 129
L+ SR D+++ ++ N + D D
Sbjct: 98 RLDFLL-SSRPTAVNLSNSLVEIKNILKSSSDLKAFDGSLYNYVCELIDEDLA 149
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 27.7 bits (60), Expect = 1.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 27 AIEAIKLGSTAIGISTSEGVVLAAEKRI 54
AI A KLG IG + V A +
Sbjct: 227 AIVAKKLGRNFIGCDMNAEYVNQANFVL 254
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 25.5 bits (56), Expect = 1.8
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 85 SRILTDRARVECANHWFTYDEKMDIESVAQA 115
S ++ +++ V+ N + Y + +I+ V Q
Sbjct: 31 SDVIGNKSVVQVKNFFVNYRRRFNIDEVLQE 61
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 164
Score = 25.5 bits (56), Expect = 4.4
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 180 LQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELS 238
LQ YH +T++E I +V ++ + + T ++L + D + + +
Sbjct: 37 LQSKYHPDLTMEECIENVNRVISKREVQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEG 95
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 25.3 bits (54), Expect = 7.4
Identities = 8/102 (7%), Positives = 23/102 (22%), Gaps = 5/102 (4%)
Query: 14 TFSPEGRLFQVEYAIEAIKLGSTAIGIS-----TSEGVVLAAEKRITSVLMEPSSIKKIV 68
S +Y +A + G I+ + + + +
Sbjct: 10 VASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPRVVDGVGILR 69
Query: 69 EIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIE 110
I+ +I + ++ + H +
Sbjct: 70 GIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKAT 111
>d1k28d1 b.106.1.1 (D:4-200) Baseplate structural protein gp27
{Bacteriophage T4 [TaxId: 10665]}
Length = 197
Score = 24.8 bits (54), Expect = 8.3
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 126 SDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQE--- 182
+D + +R +G +DSKG + ++ ++ + K A +S++E
Sbjct: 75 NDINNVKTRIYGCKHFSVSVDSKGDNIIAIELGTIHSIENLKFGRPFFPDAGESIKEMLG 134
Query: 183 -VYHESMTLKEAIN 195
+Y + L AIN
Sbjct: 135 VIYQDRTLLTPAIN 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.357
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 872,761
Number of extensions: 38721
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 52
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.4 bits)