BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5095
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAG---LEAEADYPFRN 58
+E Q+ + L+ LS+ L+ C+ + GC GG + A ++ ++ + EA YP+ +
Sbjct: 34 IEGQWQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVS 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVF-NGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
NG +C + ++ ++D + D L GPL ++ DYNG ++
Sbjct: 94 GNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILT 153
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGTNAC 170
C SE L+H V++VGY P WI++NSW +DGY +E+GTN C
Sbjct: 154 S---CTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 16/183 (8%)
Query: 2 LESQYAIKHGTLLPLSKSQLIEC--NIYNQGCQGGGFNKAIQYLKH-AGLEAEADYPFRN 58
LES AI G +L L++ QL++C N N GCQGG ++A +Y+++ G+ E YP++
Sbjct: 35 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG 94
Query: 59 QNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDY--NGK 114
Q+ C + K V D + N + + Y P+ + D+ K
Sbjct: 95 QDD---HCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFE--VTNDFLMYRK 149
Query: 115 LIRKNDVC--PSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACG 171
I + C + +NHAV+ VGYG + +P WIV+NSWG +WG +GYF +ERG N CG
Sbjct: 150 GIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWG-MNGYFLIERGKNMCG 208
Query: 172 IES 174
+ +
Sbjct: 209 LAA 211
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ K+ G+++E YP+ Q
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQ- 92
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 93 --EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 150
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG++ WI++NSWG WG + GY + R NACGI
Sbjct: 151 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG-NKGYILMARNKNNACGI 206
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ K+ G+++E YP+ Q
Sbjct: 36 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQ- 94
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 95 --EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 152
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG++ WI++NSWG WG + GY + R NACGI
Sbjct: 153 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG-NKGYILMARNKNNACGI 208
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ K+ G+++E YP+ Q
Sbjct: 32 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQ- 90
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 91 --EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 148
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG++ WI++NSWG WG + GY + R NACGI
Sbjct: 149 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG-NKGYILMARNKNNACGI 204
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ K+ G+++E YP+ Q
Sbjct: 33 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQ- 91
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 92 --EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 149
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG++ WI++NSWG WG + GY + R NACGI
Sbjct: 150 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG-NKGYILMARNKNNACGI 205
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ ++ G+++E YP+ Q+
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD 93
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 94 E---SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 150
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG++ WI++NSWG + GY + R NACGI
Sbjct: 151 YDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGI 206
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ K+ G+++E YP+ Q
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE 192
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 193 E---SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 249
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG++ WI++NSWG WG + GY + R NACGI
Sbjct: 250 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG-NKGYILMARNKNNACGI 305
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 2 LESQYAIKHGTLL--PLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRN 58
+ESQ I +G +S+ QL++C GC GG N A Y+ ++ G+++E YP+
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEM 208
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVFNGSDT--FRRMLYHYGPLVAGMNGA-LLQDYNGKL 115
+G C YD +V R+S ++ +G D M+ GP+ + Y+G
Sbjct: 209 ADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGG- 264
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVER-GTNACGIE 173
+ N C + HAV+IVGYG + W+V+NSWG WG DGYF + R N CGI
Sbjct: 265 VYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGL-DGYFKIARNANNHCGIA 323
Query: 174 SYGGICT 180
+ T
Sbjct: 324 GVASVPT 330
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKH-AGLEAEADYPFRNQN 60
+E Q+ + GTLL LS+ +L++C+ ++ C GG + A +K+ GLE E DY ++
Sbjct: 34 VEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQ--- 90
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSD-TFRRMLYHYGPLVAGMNGALLQDYNGKLIRK- 118
G C + A K KV + D + + ++ L GP+ +N +Q Y + R
Sbjct: 91 GHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPL 150
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
+C ++HAV++VGYG R VP W ++NSWG WG + GY+ + RG+ ACG+ +
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWG-EKGYYYLHRGSGACGVNT 206
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q K G LL LS L++C N GC GG A QY+ K+ G+++E YP+ Q
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQ- 92
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + K +
Sbjct: 93 --EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 150
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERG-TNACGI 172
++ C S+NLNHAV+ VGYG WI++NSWG WG GY + R NACGI
Sbjct: 151 YDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGM-GGYIKMARNKNNACGI 206
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQ 59
+E QY T + S+ QL++C+ N GC GG A QYLK GLE E+ YP+
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESSYPY--- 181
Query: 60 NGVTGRCAYDARKVKVRVSDF-LVFNGSDT-FRRMLYHYGPLVAGMN--GALLQDYNGKL 115
V G+C Y+ + +V+ F V +GS+ + ++ GP ++ + +G
Sbjct: 182 TAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSG-- 239
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGT-NACGIE 173
I ++ C +NHAV+ VGYG + WIV+NSWG WG + GY + R N CGI
Sbjct: 240 IYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWG-ERGYIRMVRNRGNMCGIA 298
Query: 174 SYGGI 178
S +
Sbjct: 299 SLASL 303
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 37 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 96
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 97 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 153
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 154 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 213
Query: 175 Y 175
+
Sbjct: 214 F 214
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 95 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 151
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 152 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
Query: 175 Y 175
+
Sbjct: 212 F 212
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 36 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 95
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 96 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 152
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 153 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 212
Query: 175 Y 175
+
Sbjct: 213 F 213
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 95 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 151
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 152 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
Query: 175 Y 175
+
Sbjct: 212 F 212
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 95 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 151
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 152 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
Query: 175 Y 175
+
Sbjct: 212 F 212
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 191
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 192 ---AMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 248
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 249 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308
Query: 175 Y 175
+
Sbjct: 309 F 309
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDARKVKVRVSDF--LVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD++ S + L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDLKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG ++GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQY-LKHAGLEAEADYPFRNQ 59
+ES I+ G L+ LS+ QL++CN N GC+GG F A QY + + G++ EA+YP++
Sbjct: 33 TVESINQIRTGNLISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDNGGIDTEANYPYK-- 90
Query: 60 NGVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVA-GMNGALLQDYNGKLIRK 118
V G C + V++ + + ++ + +VA + Q Y +
Sbjct: 91 -AVQGPCRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIF-- 147
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER--GTNACGI 172
+ C ++ LNH VVIVGY + WIVRNSWGR+ + GY ++R G CGI
Sbjct: 148 SGPCGTK-LNHGVVIVGYWKDY----WIVRNSWGRYWGEQGYIRMKRVGGCGLCGI 198
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDA--RKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD+ R R L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG + GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY---NQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
LE+Q +K G L+ LS L++C+ N+GC GG A QY+ + G++++A YP++
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 58 NQNGVTGRCAYDA--RKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
+ +C YD+ R R L + D + + + GP+ G++ + +
Sbjct: 94 ---AMDQKCQYDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT-NACGIES 174
+ ++N+NH V++VGYG + W+V+NSWG + GY + R N CGI S
Sbjct: 151 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIAS 210
Query: 175 Y 175
+
Sbjct: 211 F 211
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQY-LKHAGLEAEADYPFRNQ 59
+ES I+ G L+ LS+ QL++C+ N GC+GG F++A QY + + G++ EA+YP++
Sbjct: 33 TVESINQIRTGNLISLSEQQLVDCSKKNHGCKGGYFDRAYQYIIANGGIDTEANYPYK-- 90
Query: 60 NGVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVA-GMNGALLQDYNGKLIRK 118
G C + V++ + + + + +VA + Q Y G +
Sbjct: 91 -AFQGPCRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIF-- 147
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER--GTNACGI 172
C ++ LNH VVIVGYG + WIVRNSWGR + GY ++R G CGI
Sbjct: 148 TGPCGTK-LNHGVVIVGYGKDY----WIVRNSWGRHWGEQGYTRMKRVGGCGLCGI 198
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL---KHAGLEAEADYPFRN 58
+E Q+ + L LS+ L+ C+ + GC GG N A +++ + + E YP+ +
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAS 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVFNGSDT-FRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
G++ C V ++ + + L GP+ ++ + Y G ++
Sbjct: 94 GEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT 153
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNAC 170
C SE L+H V++VGY VP WI++NSW +WG ++GY + +G+N C
Sbjct: 154 S---CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWG-EEGYIRIAKGSNQC 203
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY--NQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQ 59
+E Q A++ G L LS+ LI+C+ N GC GG + A Y+ G+ +E+ YP+ Q
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQ 207
Query: 60 NGVTGRCAYDARKVKVRVSDFLVFNGSD--TFRRMLYHYGPLVAGMNGA-LLQDYNGKLI 116
C +D+ + +S + D + + GP+ ++ LQ Y+G L
Sbjct: 208 GDY---CRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF 264
Query: 117 RKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGI 172
+ C +LNH V++VGYG + WI++NSWG WG + V N CGI
Sbjct: 265 Y-DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL---KHAGLEAEADYPFRN 58
+E Q+ + L LS+ L+ C+ + GC GG N A +++ + + E YP+ +
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAS 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVFNGSDT-FRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
G++ C V ++ + + L GP+ ++ + Y G ++
Sbjct: 94 GEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT 153
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNAC 170
C SE L+H V++VGY VP WI++NSW +WG ++GY + +G+N C
Sbjct: 154 S---CVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWG-EEGYIRIAKGSNQC 203
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 8/176 (4%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
LE Q G LL L+ L++C N GC GG A QY+ ++ G+++E YP+ Q+
Sbjct: 34 LEGQLKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD 93
Query: 61 GVTGRCAYD--ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ-DYNGKLIR 117
C Y+ + K R + +R + GP+ ++ +L + +
Sbjct: 94 E---SCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVY 150
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERG-TNACGI 172
++ C S+ LNHAV+ VGYG++ WI++NSWG + GY + R NACGI
Sbjct: 151 YDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGI 206
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL---KHAGLEAEADYPFRN 58
+E Q+ + L L++ L+ C+ + GC GG N A +++ + + E YP+ +
Sbjct: 34 VECQWFLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAS 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVFNGSDT-FRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
G++ C V ++ + + L GP+ ++ + Y G ++
Sbjct: 94 GEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT 153
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNAC 170
C SE L+H V++VGY VP WI++NSW +WG ++GY + +G+N C
Sbjct: 154 S---CVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWG-EEGYIRIAKGSNQC 203
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL---KHAGLEAEADYPFRN 58
+E Q+ + L L++ L+ C+ + GC GG N A +++ + + E YP+ +
Sbjct: 34 VECQWFLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAS 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVFNGSDT-FRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
G++ C V ++ + + L GP+ ++ + Y G ++
Sbjct: 94 GEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT 153
Query: 118 KNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNAC 170
C SE L+H V++VGY VP WI++NSW +WG ++GY + +G+N C
Sbjct: 154 S---CVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWG-EEGYIRIAKGSNQC 203
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
+E+ +AI G L+ LS+ +LI+C ++GC G ++ +++ KH G+ +EADYP++ ++
Sbjct: 35 IEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARD 94
Query: 61 GVTGRCAYDARKVKVRVSDFLV--------FNGSDTFRRMLYHYGPLVAGMNGALLQDYN 112
G +C + + KV + ++ V + +++ + P+ ++ Y+
Sbjct: 95 G---KCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYS 151
Query: 113 GKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGT 167
G + + +NH V+IVGYG V WI +NSWG WG DGY ++R T
Sbjct: 152 GGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGI-DGYIRIQRNT 206
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
+E I G L+ LS+ QL++C N GC+GG N A Q++ + G+ +E YP+R Q+
Sbjct: 36 VEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD 95
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKND 120
G+ +A V + + + + + ++ + + P+ M+ A +D+ +L R
Sbjct: 96 GIC-NSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ-PVSVTMDAAG-RDF--QLYRSGI 150
Query: 121 VCPSENL--NHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTN----ACGIE 173
S N+ NHA+ +VGYG + WIV+NSWG+ WG + GY ER CGI
Sbjct: 151 FTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWG-ESGYIRAERNIENPDGKCGIT 209
Query: 174 SY 175
+
Sbjct: 210 RF 211
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQY-LKHAGLEAEADYPFRNQ 59
+ES I+ G L+ LS+ +L++C+ N GC GG F A QY + + G++ +A+YP++
Sbjct: 33 TVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYK-- 90
Query: 60 NGVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVA-GMNGALLQDYNGKLIRK 118
V G C ++ V + + + F ++ + VA + A Q Y+ +
Sbjct: 91 -AVQGPCQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIF-- 147
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER--GTNACGI 172
+ C ++ LNH V IVGY Q WIVRNSWGR+ + GY + R G CGI
Sbjct: 148 SGPCGTK-LNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 16/182 (8%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQN 60
+ES I+ G L+ LS+ +L++C+ + GC GG N A QY+ + G++ + +YP+ +
Sbjct: 34 VESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPY---S 90
Query: 61 GVTGRC-AYDARKVKVRVSDFLVFNGSDTFRRMLYHYG-PLVAGMNGALLQDYNGKLIRK 118
V G C Y R V + + N + + + GA Q Y+ +
Sbjct: 91 AVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIF-- 148
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIESYGG 177
C + NH VVIVGYG + WIVRNSWG+ WG + GY +ER + S G
Sbjct: 149 TGPCGTAQ-NHGVVIVGYGTQSGKNYWIVRNSWGQNWG-NQGYIWMER-----NVASSAG 201
Query: 178 IC 179
+C
Sbjct: 202 LC 203
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY--NQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ NQGC GG +A QY+K + GL++E YP+
Sbjct: 34 LEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYV- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVF--NGSDTFRRMLYHYGPLVAGMNG--ALLQDYNGK 114
V C Y + + F V + + GP+ M+ + Q Y
Sbjct: 93 --AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSG 150
Query: 115 LIRKNDVCPSENLNHAVVIVGYGMR----HQVPVWIVRNSWG-RWGPDDGYFTVERG-TN 168
+ + D C S+NL+H V++VGYG W+V+NSWG WG +GY + + N
Sbjct: 151 IYFEPD-CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWG-SNGYVKIAKDKNN 208
Query: 169 ACGIES 174
CGI +
Sbjct: 209 HCGIAT 214
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY--NQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ NQGC GG +A QY+K + GL++E YP+
Sbjct: 34 LEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYV- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVF--NGSDTFRRMLYHYGPLVAGMNG--ALLQDYNGK 114
V C Y + + F V + + GP+ M+ + Q Y
Sbjct: 93 --AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSG 150
Query: 115 LIRKNDVCPSENLNHAVVIVGYGMR----HQVPVWIVRNSWG-RWGPDDGYFTVERG-TN 168
+ + D C S+NL+H V++VGYG W+V+NSWG WG +GY + + N
Sbjct: 151 IYFEPD-CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWG-SNGYVKIAKDKNN 208
Query: 169 ACGIES 174
CGI +
Sbjct: 209 HCGIAT 214
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY-NQGCQGGGFNKAIQYLKH-AGLEAEADYPFRNQ 59
+E AI+ G+L+ LS+ +LI+C+ N GCQGG + A +Y+K+ GL EA YP+R
Sbjct: 37 VEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA 96
Query: 60 NGVTGRCAYDARKVKVRV-----SDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
G T A A+ V V D + D R + + +G Y+
Sbjct: 97 RG-TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEG 155
Query: 115 LIRKNDVCPSENLNHAVVIVGYGMRHQVPV-WIVRNSWG-RWGPDDGYFTVERGTNACG 171
+ C +E L+H V +VGYG+ W V+NSWG WG + GY VE+ + A G
Sbjct: 156 VFTGE--CGTE-LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWG-EQGYIRVEKDSGASG 210
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 1 MLESQYAI-KHGTLLP-LSKSQLIECNIYNQGCQGG-GFNKAIQYLKHAGLEAEADYPFR 57
MLE++ I + + P LS +++ C+ Y QGC+GG + A +Y + GL EA +P+
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY- 300
Query: 58 NQNGVTGRCAYDARKVKVRVSDFLVFNG------SDTFRRMLYHYGPLVAGMNGALLQDY 111
G C + S++ G + L H+GP+ + Y
Sbjct: 301 --TGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVA-----FEVY 353
Query: 112 NGKLIRKNDVC----------PSENLNHAVVIVGYGMRHQ--VPVWIVRNSWGR-WGPDD 158
+ L K + P E NHAV++VGYG + WIV+NSWG WG ++
Sbjct: 354 DDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWG-EN 412
Query: 159 GYFTVERGTNACGIES 174
GYF + RGT+ C IES
Sbjct: 413 GYFRIRRGTDECAIES 428
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 16/194 (8%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQY-LKHAGLEAEADYPFRNQN 60
+E AI G L+ +S+ Q+++C+ GG + A ++ + + G+ ++A+YP+
Sbjct: 34 IEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPY---T 90
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGM--NGALLQDYNGKLIRK 118
GV G C + + + R+ + S + P+ + + Q Y G I
Sbjct: 91 GVDGTCDLN-KPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFA 149
Query: 119 NDVCPSE--NLNHAVVIVGYGMR-HQVPVWIVRNSWG-RWGPDDGYFTVERGTN----AC 170
C + ++H V+IVGYG WIV+NSWG WG DGY + R TN C
Sbjct: 150 GSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGI-DGYILIRRNTNRPDGVC 208
Query: 171 GIESYGGICTRTLN 184
I+++G T++ +
Sbjct: 209 AIDAWGSYPTKSTS 222
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 8 IKHGTLLPLSKSQLIECNI-YNQGCQGGGFNKAIQYLKH-AGLEAEADYPFRNQNGVTGR 65
IK L+ LS+ +L++C+ NQGC GG + A +++K G+ EA+YP+ +G
Sbjct: 41 IKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDV 100
Query: 66 CAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVA-GMNGALLQDYNGKLIRKNDVCPS 124
+A V + + + N + + + + VA G+ Q Y+ + + C +
Sbjct: 101 SKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGS--CGT 158
Query: 125 ENLNHAVVIVGYGMR-HQVPVWIVRNSWG-RWGPDDGYFTVERGTNA----CGI 172
E L+H V IVGYG W V+NSWG WG + GY +ERG + CGI
Sbjct: 159 E-LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWG-EKGYIRMERGISDKEGLCGI 210
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 8 IKHGTLLPLSKSQLIEC--NIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQNGVTG 64
I G+L+ LS+ +LI+C +GC GG Q++ G+ E +YP+ Q+G
Sbjct: 40 ITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCD 99
Query: 65 RCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA--LLQDYNGKLIRKNDVC 122
D + V + + + +N + + Y P+ ++ A + Y + C
Sbjct: 100 VALQDQKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIFTGP--C 156
Query: 123 PSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER---GTNACGIES 174
+ ++HA+VIVGYG V WIV+NSW ++GY + R G CGI +
Sbjct: 157 GTA-VDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIAT 210
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 18/193 (9%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQ-YLKHAGLEAEADYPFRNQN 60
+ESQYAI+ L+ LS+ +L++C+ N GC GG N A + ++ G+ + DYP+ +
Sbjct: 51 VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSD- 109
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKND 120
C D K + ++L + + L GP+ ++ A+ D+ D
Sbjct: 110 -APNLCNIDRCTEKYGIKNYLSV-PDNKLKEALRFLGPI--SISVAVSDDFAFYKEGIFD 165
Query: 121 VCPSENLNHAVVIVGYGMRHQV-PV---------WIVRNSWGRWGPDDGYFTVERGTNAC 170
+ LNHAV++VG+GM+ V P+ +I++NSWG+ + G+ +E T+
Sbjct: 166 GECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE--TDES 223
Query: 171 GIESYGGICTRTL 183
G+ G+ T
Sbjct: 224 GLMRKCGLGTDAF 236
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 18/193 (9%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQ-YLKHAGLEAEADYPFRNQN 60
+ESQYAI+ L+ LS+ +L++C+ N GC GG N A + ++ G+ + DYP+ +
Sbjct: 50 VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSD- 108
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKND 120
C D K + ++L + + L GP+ ++ A+ D+ D
Sbjct: 109 -APNLCNIDRCTEKYGIKNYLSV-PDNKLKEALRFLGPI--SISVAVSDDFAFYKEGIFD 164
Query: 121 VCPSENLNHAVVIVGYGMRHQV-PV---------WIVRNSWGRWGPDDGYFTVERGTNAC 170
+ LNHAV++VG+GM+ V P+ +I++NSWG+ + G+ +E T+
Sbjct: 165 GECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE--TDES 222
Query: 171 GIESYGGICTRTL 183
G+ G+ T
Sbjct: 223 GLMRKCGLGTDAF 235
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 8 IKHGTLLPLSKSQLIEC--NIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQNGVTG 64
I G L+ LS+ +L++C +GC GG Q++ + G+ EA+YP+ + G
Sbjct: 40 IATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCN 99
Query: 65 RCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA--LLQDYNGKLIRKNDVC 122
+ V + + + +N + + Y P+ + A Q Y+ + C
Sbjct: 100 LDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTG--PC 156
Query: 123 PSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER---GTNACGI 172
+ ++HAV IVGYG + WIV+NSWG ++GY ++R G CGI
Sbjct: 157 GTA-VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 8 IKHGTLLPLSKSQLIEC--NIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFRNQNGVTG 64
I G L+ LS+ +L++C +GC GG Q++ + G+ EA+YP+ + G
Sbjct: 40 IATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCN 99
Query: 65 RCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA--LLQDYNGKLIRKNDVC 122
+ V + + + +N + + Y P+ + A Q Y+ + C
Sbjct: 100 LDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTGP--C 156
Query: 123 PSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER---GTNACGI 172
+ ++HAV IVGYG + WIV+NSWG ++GY ++R G CGI
Sbjct: 157 GTA-VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 205
Query: 167 TNACGIES 174
N CGI S
Sbjct: 206 RNHCGIAS 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 94 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 147
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 148 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 206
Query: 167 TNACGIES 174
N CGI S
Sbjct: 207 RNHCGIAS 214
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 93
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 94 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 147
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 148 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 206
Query: 167 TNACGIES 174
N CGI S
Sbjct: 207 RNHCGIAS 214
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 205
Query: 167 TNACGIES 174
N CGI S
Sbjct: 206 RNHCGIAS 213
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 205
Query: 167 TNACGIES 174
N CGI S
Sbjct: 206 RNHCGIAS 213
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGM-GGYVKMAKDR 205
Query: 167 TNACGIES 174
N CGI S
Sbjct: 206 RNHCGIAS 213
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 72 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 130
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 131 --ATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 184
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 185 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 243
Query: 167 TNACGIES 174
N CGI S
Sbjct: 244 RNHCGIAS 251
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 205
Query: 167 TNACGIES 174
N CGI S
Sbjct: 206 RNHCGIAS 213
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 23/194 (11%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 188
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 189 --ATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 242
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 243 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM-GGYVKMAKDR 301
Query: 167 TNACGIESYGGICT 180
N CGI S T
Sbjct: 302 RNHCGIASAASYPT 315
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 126 LEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 184
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 185 --ATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 238
Query: 118 KNDV-----CPSENLNHAVVIVGYGMRHQVP----VWIVRNSWG-RWGPDDGYFTVERG- 166
K + C SE+++H V++VGYG W+V+NSWG WG GY + +
Sbjct: 239 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGM-GGYVKMAKDR 297
Query: 167 TNACGIES 174
N CGI S
Sbjct: 298 RNHCGIAS 305
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 12/182 (6%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIEC--NIYNQGCQGGGFNKAIQYL-KHAGLEAEADYPFR 57
+E I G L+ LS+ +LI+C +GC GG Q++ + G+ E +YP+
Sbjct: 33 TVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYT 92
Query: 58 NQNGVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA--LLQDYNGKL 115
Q+G + + V + + + +N + + Y P+ ++ A + Y+ +
Sbjct: 93 AQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGI 151
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVER---GTNACGI 172
C + ++HAV IVGYG + WIV+NSW ++GY + R G CGI
Sbjct: 152 FTGP--CGTA-IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
Query: 173 ES 174
+
Sbjct: 209 AT 210
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 3 ESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGV 62
ES Y T L LS+ +L++C GC G + I+Y++ G+ E YP
Sbjct: 45 ESAYLAYRNTSLDLSEQELVDC-ASQHGCHGDTIPRGIEYIQQNGVVEERSYP------- 96
Query: 63 TGRCAYDARKVKVR--------VSDFLVFNGSDT--FRRMLYHYGPLVAGMNGA----LL 108
Y AR+ + R +S++ D R L +A + G
Sbjct: 97 -----YVAREQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAF 151
Query: 109 QDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGTN 168
Q Y+G+ I ++D N HAV IVGYG WIVRNSW D GY + G N
Sbjct: 152 QHYDGRTIIQHDNGYQPNY-HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNN 210
Query: 169 ACGIESY 175
IE Y
Sbjct: 211 LMMIEQY 217
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAI-QYLKHAGLEAEADYPFRNQN 60
+ESQYAI+ L S+ +L++C++ N GC GG A + GL ++ DYP+ +
Sbjct: 53 VESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSN- 111
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKND 120
+ C + + ++ D F+ L + GP+ + A D+ D
Sbjct: 112 -LPETCNLKRCNERYTIKSYVSIP-DDKFKEALRYLGPISISI--AASDDFAFYRGGFYD 167
Query: 121 VCPSENLNHAVVIVGYGMR----------HQVPVWIVRNSWGR-WGPDDGYFTVERGTN 168
NHAV++VGYGM+ + +I++NSWG WG + GY +E N
Sbjct: 168 GECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWG-EGGYINLETDEN 225
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 21 LIECNIYNQGCQGGGFNKAIQYLKHAGLEAE--ADYPF-------RNQNGV--------- 62
L C+ GC GG ++A Y GL ++ YPF +++NG
Sbjct: 130 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 189
Query: 63 TGRCAYDARKVKVRVSDF-----LVFNGSDTFRRMLYHYGPLVAGMNGALLQD---YNGK 114
T +C Y + V ++ G D + R L+ GP + + +D YN
Sbjct: 190 TPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFD--VYEDFIAYNSG 247
Query: 115 LIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIE 173
+ V HAV +VG+G + VP W + NSW WG DGYF + RG++ CGIE
Sbjct: 248 VYHH--VSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGM-DGYFLIRRGSSECGIE 304
Query: 174 SYG 176
G
Sbjct: 305 DGG 307
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 21 LIECNIYNQGCQGGGFNKAIQYLKHAGLEAE--ADYPF-------RNQNGV--------- 62
L C+ GC GG ++A Y GL ++ YPF +++NG
Sbjct: 129 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 188
Query: 63 TGRCAYDARKVKVRVSDF-----LVFNGSDTFRRMLYHYGPLVAGMNGALLQD---YNGK 114
T +C Y + V ++ G D + R L+ GP + + +D YN
Sbjct: 189 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFD--VYEDFIAYNSG 246
Query: 115 LIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIE 173
+ V HAV +VG+G + VP W + NSW WG DGYF + RG++ CGIE
Sbjct: 247 VYHH--VSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGM-DGYFLIRRGSSECGIE 303
Query: 174 SYG 176
G
Sbjct: 304 DGG 306
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRK 118
C Y+ K V++ + F + L V ++ A+ + L K
Sbjct: 93 --ATEESCKYNP---KYSVANDVGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYK 147
Query: 119 NDV-----CPSENLNHAVVIVGYG-MRHQVPVWIVRNSWG-RWGPDDGYFTVERG-TNAC 170
+ C S +LNHA+++VGYG + + W+V+NSWG WG GY + + N C
Sbjct: 148 EGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWGM-GGYVKMAKDRRNHC 206
Query: 171 GIES 174
GI S
Sbjct: 207 GIAS 210
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I G L+ LS+ +L++C + GC GG ++QY+ G+ E +YP+ +
Sbjct: 33 TIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQ 92
Query: 61 GVTGRC-AYDARKVKVRVSDFLVFNGSDT---FRRMLYHYGPLVAGMNGALLQDYNGKLI 116
GRC A D + KV ++ + +D + + +V G Q Y G +
Sbjct: 93 ---GRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIY 149
Query: 117 RKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGT----NACG 171
C + N +HAV VGYG + +++NSWG WG + GY ++R + CG
Sbjct: 150 --EGPCGT-NTDHAVTAVGYGKTY----LLLKNSWGPNWG-EKGYIRIKRASGRSKGTCG 201
Query: 172 I 172
+
Sbjct: 202 V 202
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 21 LIECNIYNQGCQGGGFNKAIQYLKHAGLEAE--ADYPF-------RNQNGV--------- 62
L C+ GC GG ++A Y GL ++ YPF +++NG
Sbjct: 152 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 211
Query: 63 TGRCAYDARKVKVRVSDF-----LVFNGSDTFRRMLYHYGPLVAGMNGALLQD---YNGK 114
T +C Y + V ++ G D + R L+ GP + + +D YN
Sbjct: 212 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFD--VYEDFIAYNSG 269
Query: 115 LIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIE 173
+ V HAV +VG+G + VP W + NSW WG DGYF + RG++ CGIE
Sbjct: 270 VYHH--VSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGM-DGYFLIRRGSSECGIE 326
Query: 174 SYG 176
G
Sbjct: 327 DGG 329
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 1 MLESQYAI-KHGTLLP-LSKSQLIECNIYNQGCQGG-GFNKAIQYLKHAGLEAEADYPFR 57
MLE++ I + + P LS +++ C+ Y QGC GG + A +Y + G+ E +P+
Sbjct: 241 MLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPY- 299
Query: 58 NQNGVTGRCAYDARKVKVRVSDFLVFN------GSDTFRRMLYHYGPLVAG--MNGALLQ 109
C ++ S++ + L +GP+ ++ L
Sbjct: 300 --TATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLH 357
Query: 110 DYNGKLIR---KNDVCPSENLNHAVVIVGYGMRHQVPV-----WIVRNSWG-RWGPDDGY 160
++G + P E NHAV++VGYG + PV WIV+NSWG +WG + GY
Sbjct: 358 YHSGIYHHTGLSDPFNPFELTNHAVLLVGYG---KDPVTGLDYWIVKNSWGSQWG-ESGY 413
Query: 161 FTVERGTNACGIES 174
F + RGT+ C IES
Sbjct: 414 FRIRRGTDECAIES 427
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 8 IKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCA 67
I G LL LS+ +L++C+ ++ GC+GG ++QY+ + G+ YP++ +
Sbjct: 40 IVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATD 99
Query: 68 YDARKVKVRVSDFLVFNGSDTFRRMLYHYGPL--VAGMNGALLQDYNGKLIRKNDVCPSE 125
KVK+ + N +F L + PL + G Q Y + D
Sbjct: 100 KPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKSGVF---DGPCGT 155
Query: 126 NLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGT----NACGI 172
L+HAV VGYG I++NSWG WG + GY ++R + CG+
Sbjct: 156 KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWG-EKGYMRLKRQSGNSQGTCGV 206
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIY--NQGCQGGGFNKAIQY-LKHAGLEAEADYPFRN 58
LE + K G L+ LS+ +L++C+ NQ C GG N A QY L G+ +E YP+
Sbjct: 40 LEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLA 99
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALL--QDYNGKL 115
++ C + + V++ F V S+ + P+ + + Q Y+ +
Sbjct: 100 RD---EECRAQSCEKVVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGV 156
Query: 116 IRKNDVCPSENLNHAVVIVGYGMRHQVP--VWIVRNSWGR-WGPDD-GYFTVERGTNA-C 170
D +L+H V++VGYG + WI++NSWG WG D Y + +G C
Sbjct: 157 F---DASCGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQC 213
Query: 171 GI 172
G+
Sbjct: 214 GL 215
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMR 139
K + C SE+++H V++VGYG
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFE 173
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECN--IYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRN 58
LE Q K G L+ LS+ L++C+ N+GC GG + A QY++ + GL++E YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE- 92
Query: 59 QNGVTGRCAYDARKVKVRVSDFL-VFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIR 117
C Y+ + + F+ + + + GP+ ++ + L
Sbjct: 93 --ATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG----HESFLFY 146
Query: 118 KNDV-----CPSENLNHAVVIVGYGMR 139
K + C SE+++H V++VGYG
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYGFE 173
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 78 SDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDY-NGKLIRKNDVCPSENLNHAVVIVGY 136
S + V N ++ + YGP+ AG + +D+ N K + HA+ I+G+
Sbjct: 151 SSYNVKNDEKAIQKEIMKYGPVEAGFT--VYEDFLNYKSGIYKHITGETLGGHAIRIIGW 208
Query: 137 GMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
G+ ++ P W++ NSW WG ++GYF + RG + C IES
Sbjct: 209 GVENKAPYWLIANSWNEDWG-ENGYFRIVRGRDECSIES 246
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E IK G L+ LS+ +L++C++ + GC G + ++QY+ G+ A YP+ +
Sbjct: 33 TVEGINKIKTGNLVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQNGIHLRAKYPYIAKQ 92
Query: 61 GVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYG-PLVAGMNGALLQDYNGKLIRKN 119
KVK + N + + H +V G Q+Y G + +
Sbjct: 93 QTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGS 152
Query: 120 DVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGT----NACGI 172
C ++ ++HAV VGYG +++NSWG WG ++GY + R + CG+
Sbjct: 153 --CGTK-VDHAVTAVGYGKSGGKGYILIKNSWGPGWG-ENGYIRIRRASGNSPGVCGV 206
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 3 ESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGV 62
ES Y L L++ +L++C GC G + I+Y++H G+ E+ Y + +
Sbjct: 44 ESAYLAYRQQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQS 102
Query: 63 TGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA----LLQDYNGKLIRK 118
R +A++ + + ++ R L +A + G + Y+G+ I +
Sbjct: 103 CRRP--NAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ 160
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIESY 175
D N HAV IVGY V WIVRNSW WG D+GY + IE Y
Sbjct: 161 RDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWG-DNGYGYFAANIDLMMIEEY 216
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 3 ESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGV 62
ES Y L L++ +L++C GC G + I+Y++H G+ E+ Y + +
Sbjct: 44 ESAYLAYRQQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQS 102
Query: 63 TGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA----LLQDYNGKLIRK 118
R +A++ + + ++ R L +A + G + Y+G+ I +
Sbjct: 103 CRRP--NAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ 160
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIESY 175
D N HAV IVGY V WIVRNSW WG D+GY + IE Y
Sbjct: 161 RDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWG-DNGYGYFAANIDLMMIEEY 216
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 3 ESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGV 62
ES Y L L++ +L++C GC G + I+Y++H G+ E+ Y + +
Sbjct: 124 ESAYLAYRDQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQS 182
Query: 63 TGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA----LLQDYNGKLIRK 118
R +A++ + + ++ R L +A + G + Y+G+ I +
Sbjct: 183 CRRP--NAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ 240
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIESY 175
D N HAV IVGY V WIVRNSW WG D+GY + IE Y
Sbjct: 241 RDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWG-DNGYGYFAANIDLMMIEEY 296
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 123 PSENLNHAVVIVGYGMRHQ--VPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
P E NHAV++VGYG + WIV+NSWG WG ++GYF + RGT+ C IES
Sbjct: 5 PFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWG-ENGYFRIRRGTDECAIES 58
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 3 ESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGV 62
ES Y L L++ +L++C GC G + I+Y++H G+ E+ Y + +
Sbjct: 44 ESAYLAYRNQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQS 102
Query: 63 TGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGA----LLQDYNGKLIRK 118
R +A++ + + + R L +A + G + Y+G+ I +
Sbjct: 103 CRRP--NAQRFGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ 160
Query: 119 NDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG-RWGPDDGYFTVERGTNACGIESY 175
D N HAV IVGY V WIVRNSW WG D+GY + IE Y
Sbjct: 161 RDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWG-DNGYGYFAANIDLMMIEEY 216
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 2 LESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNG 61
+ES I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+ G
Sbjct: 185 IESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE---G 241
Query: 62 VTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKL 115
V C Y A+ VR +N + +V G Q Y G +
Sbjct: 242 VQRYCRSREKGPYAAKTDGVR--QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI 299
Query: 116 IRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGT-NACGI 172
V P N ++HAV VGYG + ++RNSWG WG ++GY ++RGT N+ G+
Sbjct: 300 F----VGPCGNKVDHAVAAVGYGPNYI----LIRNSWGTGWG-ENGYIRIKRGTGNSYGV 350
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + VP W+V NSW WG D+G+F + RG N CGIES
Sbjct: 261 HAIRILGWGIENGVPYWLVANSWNADWG-DNGFFKILRGENHCGIES 306
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + VP W+V NSW WG D+G+F + RG N CGIES
Sbjct: 205 HAIRILGWGIENGVPYWLVANSWNADWG-DNGFFKILRGENHCGIES 250
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSW-GRWGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + VP W+V NSW WG D+G+F + RG N CGIES
Sbjct: 199 HAIRILGWGIENGVPYWLVANSWNADWG-DNGFFKILRGENHCGIES 244
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 6/167 (3%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L+ LS+ +L++C + GC+GG A++Y+ G+ + YP++ +
Sbjct: 33 TVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQ 92
Query: 61 GVTGRCAYDARKVKVR-VSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKN 119
G VK V N + + +V G Q Y G +
Sbjct: 93 GTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF--E 150
Query: 120 DVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVER 165
C ++ ++HAV VGYG +++NSWG WG + GY ++R
Sbjct: 151 GPCGTK-VDHAVTAVGYGKSGGKGYILIKNSWGTAWG-EKGYIRIKR 195
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L+ LS+ +L++C + GC+GG A++Y+ G+ + YP++ +
Sbjct: 33 TVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQ 92
Query: 61 GVTGRCAYDARKVKVR-VSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKN 119
G VK V N + + +V G Q Y G +
Sbjct: 93 GTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF--E 150
Query: 120 DVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVER 165
C ++ + HAV VGYG +++NSWG WG + GY ++R
Sbjct: 151 GPCGTK-VEHAVTAVGYGKSGGKGYILIKNSWGTAWG-EKGYIRIKR 195
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 23 ECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRC-AYDARKVKVR---VS 78
+C + GC+GG A+QY+ ++G+ YP+ GV +C A A+ KV+ V
Sbjct: 55 DCERRSYGCRGGFPLYALQYVANSGIHLRQYYPY---EGVQRQCRASQAKGPKVKTDGVG 111
Query: 79 DFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGM 138
N +R+ +V G Q+Y G + C +++HAV VGYG
Sbjct: 112 RVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIF--AGPC-GTSIDHAVAAVGYGN 168
Query: 139 RHQVPVWIVRNSWGR-WGPDDGYFTVERGT----NACGIES 174
+ +++NSWG WG + GY ++RG+ ACG+ S
Sbjct: 169 DY----ILIKNSWGTGWG-EGGYIRIKRGSGNPQGACGVLS 204
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+
Sbjct: 33 TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE--- 89
Query: 61 GVTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
GV C Y A+ VR +N + +V G Q Y G
Sbjct: 90 GVQRYCRSREKGPYAAKTDGVR--QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGG 147
Query: 115 LIRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT 167
+ V P N ++HAV VGYG + +++NSWG ++GY ++RGT
Sbjct: 148 IF----VGPCGNKVDHAVAAVGYGPNYI----LIKNSWGTGWGENGYIRIKRGT 193
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 50 AEADYPFRNQNGVTGRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQ 109
E D P N+ G S + V N +Y GP+ ++
Sbjct: 73 GEGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF--SVYS 130
Query: 110 DYNGKLIRKNDV---CPSENLN-HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVE 164
D+ L+ K+ V E + HA+ I+G+G+ + P W+V NSW WG D+G+F +
Sbjct: 131 DF---LLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWG-DNGFFKIL 186
Query: 165 RGTNACGIES 174
RG + CGIES
Sbjct: 187 RGQDHCGIES 196
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE--- 89
Query: 61 GVTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
GV C Y A+ VR +N + +V G Q Y G
Sbjct: 90 GVQRYCRSREKGPYAAKTDGVR--QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGG 147
Query: 115 LIRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT 167
+ V P N ++HAV VGYG + +++NSWG ++GY ++RGT
Sbjct: 148 IF----VGPCGNKVDHAVAAVGYGPNYI----LIKNSWGTGWGENGYIRIKRGT 193
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+
Sbjct: 33 TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE--- 89
Query: 61 GVTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
GV C Y A+ VR +N + +V G Q Y G
Sbjct: 90 GVQRYCRSREKGPYAAKTDGVR--QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGG 147
Query: 115 LIRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT 167
+ V P N ++HAV VGYG + +++NSWG ++GY ++RGT
Sbjct: 148 IF----VGPCGNKVDHAVAAVGYGPNYI----LIKNSWGTGWGENGYIRIKRGT 193
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE--- 89
Query: 61 GVTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
GV C Y A+ VR +N + +V G Q Y G
Sbjct: 90 GVQRYCRSREKGPYAAKTDGVR--QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGG 147
Query: 115 LIRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT 167
+ V P N ++HAV VGYG + +++NSWG ++GY ++RGT
Sbjct: 148 IF----VGPCGNKVDHAVAAVGYGPNYI----LIKNSWGTGWGENGYIRIKRGT 193
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE--- 89
Query: 61 GVTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
GV C Y A+ VR +N + +V G Q Y G
Sbjct: 90 GVQRYCRSREKGPYAAKTDGVR--QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGG 147
Query: 115 LIRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGT 167
+ V P N ++HAV VGYG + +++NSWG WG ++GY ++RGT
Sbjct: 148 IF----VGPCGNKVDHAVAAVGYGPNYI----LIKNSWGTGWG-ENGYIRIKRGT 193
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN 60
+E I+ G L S+ +L++C+ + GC GG A+Q + G+ YP+
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYE--- 89
Query: 61 GVTGRC------AYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGK 114
GV C Y A+ VR +N + +V G Q Y G
Sbjct: 90 GVQRYCRSREKGPYAAKTDGVR--QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGG 147
Query: 115 LIRKNDVCPSEN-LNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERGT 167
+ V P N ++HAV VGYG + +++NSWG ++GY ++RGT
Sbjct: 148 IF----VGPCGNKVDHAVAAVGYGPNYI----LIKNSWGTGWGENGYIRIKRGT 193
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 262 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 307
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 244
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 205 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 250
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 150 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 195
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 201 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 246
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 244
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 200 HAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIES 245
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 129 HAVVIVGYGMRHQVPVWIVRNSWGR-WGPDDGYFTVERGTNACGIES 174
HA+ I+G+G+ + P W+V NSW WG D+G+F + RG + CGIES
Sbjct: 199 HAIRILGWGVENGTPYWLVGNSWNTDWG-DNGFFKILRGQDHCGIES 244
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 64 GRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCP 123
G AY++ + + F+ ++ + G ++A + + Y + ++C
Sbjct: 140 GYTAYESERFHDNMDAFVKIIKTEVMNK-----GSVIAYIKAENVMGYEFSGKKVKNLCG 194
Query: 124 SENLNHAVVIVGYGMR-----HQVPVWIVRNSWGRWGPDDGYFTVE 164
+ +HAV IVGYG + WIVRNSWG + D+GYF V+
Sbjct: 195 DDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 64 GRCAYDARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCP 123
G AY++ + + F+ ++ + G ++A + + Y + ++C
Sbjct: 139 GYTAYESERFHDNMDAFVKIIKTEVMNK-----GSVIAYIKAENVMGYEFSGKKVQNLCG 193
Query: 124 SENLNHAVVIVGYGMR-----HQVPVWIVRNSWGRWGPDDGYFTVE 164
+ +HAV IVGYG + WIVRNSWG + D+GYF V+
Sbjct: 194 DDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 8 IKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCA 67
I+ G L+ LS+ +L++C + GC+GG A++Y+ G+ + YP++ + G
Sbjct: 146 IRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQ 205
Query: 68 YDARKVKVR-VSDFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSEN 126
VK V N + + +V G Q Y G + C ++
Sbjct: 206 VGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFE--GPCGTK- 262
Query: 127 LNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFTVERG 166
++ AV VGYG +++NSWG + GY ++R
Sbjct: 263 VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRA 302
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 19/155 (12%)
Query: 16 LSKSQLIECNIYNQG-CQGGGFNKAIQYLKHAGLEAEA--DYPFRNQN----GVTGRC-- 66
LS +I+C N G C+GG Y G+ E +Y ++Q G C
Sbjct: 57 LSVQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNE 114
Query: 67 ---AYDARKVKV-RVSDFLVFNGSDTFRRMLYHYGPLVAG-MNGALLQDYNGKLIRKNDV 121
+ R + RV D+ +G + +Y GP+ G M L +Y G + +
Sbjct: 115 FKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ- 173
Query: 122 CPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WG 155
+ +NH V + G+G+ WIVRNSWG WG
Sbjct: 174 -DTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWG 207
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 19/155 (12%)
Query: 16 LSKSQLIECNIYNQG-CQGGGFNKAIQYLKHAGLEAEA--DYPFRNQN----GVTGRC-- 66
LS +I+C N G C+GG Y G+ E +Y ++Q G C
Sbjct: 92 LSVQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNE 149
Query: 67 ---AYDARKVKV-RVSDFLVFNGSDTFRRMLYHYGPLVAG-MNGALLQDYNGKLIRKNDV 121
+ R + RV D+ +G + +Y GP+ G M L +Y G + +
Sbjct: 150 FKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ- 208
Query: 122 CPSENLNHAVVIVGYGMRHQVPVWIVRNSWGR-WG 155
+ +NH V + G+G+ WIVRNSWG WG
Sbjct: 209 -DTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWG 242
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 16 LSKSQLIECNIYNQGCQGG-GFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCAYDARKVK 74
LS +++ C+ Y QGC+GG + A +Y + GL EA +P+ G C +
Sbjct: 53 LSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFR 109
Query: 75 VRVSDFLVFNG------SDTFRRMLYHYGPLVAGMN 104
S++ G + L H+GP+
Sbjct: 110 YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFE 145
>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 184
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 29 QGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCA 67
Q +G KA +YLK L+ + PFR NG GRCA
Sbjct: 34 QAIKGMHIRKATKYLKDVTLQKQC-VPFRRYNGGVGRCA 71
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
Length = 336
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 14 LPLSKSQLIECNI-----YNQGCQGGGFNKAIQYLKHAG 47
L L++ QLI+ I YN+G +G G KA+ Y+K G
Sbjct: 218 LGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYG 256
>pdb|4FXG|A Chain A, Complement C4 In Complex With Masp-2
pdb|4FXG|D Chain D, Complement C4 In Complex With Masp-2
pdb|4FXK|A Chain A, Human Complement C4
Length = 656
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 6 YAIKHGTLLPLSKSQLIEC-NIYNQGCQGGGFNKAIQYLKHAGL 48
YA + PL+ ++ E N Y+ GC GG + A+Q + AGL
Sbjct: 590 YAAGSKSHKPLNMGKVFEAMNSYDLGCGPGGGDSALQVFQAAGL 633
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 129 HAVVIVGYG--MRHQVPVWIVRNSWGRWGPDDGYF 161
HAV+ VGY +RH + +RNSWG +DGYF
Sbjct: 237 HAVLCVGYDDEIRH----FRIRNSWGNNVGEDGYF 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,492,061
Number of Sequences: 62578
Number of extensions: 285093
Number of successful extensions: 703
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 135
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)