Query psy5095
Match_columns 192
No_of_seqs 210 out of 1162
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:11:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 5E-55 1.1E-59 355.9 13.7 177 1-180 189-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.2E-51 7E-56 344.4 20.1 178 1-181 158-340 (348)
3 cd02621 Peptidase_C1A_Cathepsi 100.0 3.1E-51 6.8E-56 330.7 19.0 178 1-181 37-242 (243)
4 cd02698 Peptidase_C1A_Cathepsi 100.0 5.3E-51 1.2E-55 328.6 19.7 175 1-181 39-238 (239)
5 cd02620 Peptidase_C1A_Cathepsi 100.0 7E-51 1.5E-55 327.4 18.1 176 1-178 36-235 (236)
6 cd02248 Peptidase_C1A Peptidas 100.0 1.4E-50 3.1E-55 319.3 18.9 175 1-179 32-210 (210)
7 KOG1543|consensus 100.0 3.2E-50 7E-55 335.9 16.8 175 1-179 142-321 (325)
8 PTZ00021 falcipain-2; Provisio 100.0 6.4E-49 1.4E-53 340.3 17.6 174 1-181 298-488 (489)
9 PTZ00364 dipeptidyl-peptidase 100.0 1.2E-48 2.6E-53 342.2 18.8 191 1-191 243-469 (548)
10 PTZ00200 cysteine proteinase; 100.0 2.3E-48 5.1E-53 335.3 17.8 173 1-181 267-445 (448)
11 PF00112 Peptidase_C1: Papain 100.0 1.8E-47 3.9E-52 302.3 16.0 176 1-180 34-219 (219)
12 PTZ00049 cathepsin C-like prot 100.0 2.9E-47 6.3E-52 337.3 18.7 181 1-184 417-679 (693)
13 PTZ00462 Serine-repeat antigen 100.0 3E-41 6.6E-46 306.7 18.4 185 1-187 564-787 (1004)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 1.1E-40 2.5E-45 263.8 17.0 164 1-167 29-213 (223)
15 smart00645 Pept_C1 Papain fami 100.0 8.7E-41 1.9E-45 257.3 15.0 134 1-176 33-170 (174)
16 KOG1544|consensus 100.0 9.6E-38 2.1E-42 252.7 8.7 177 5-181 247-460 (470)
17 COG4870 Cysteine protease [Pos 99.8 5.3E-19 1.1E-23 146.4 8.4 128 33-167 168-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.8 1.9E-18 4.1E-23 149.0 8.9 82 85-166 293-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.2 1E-10 2.2E-15 101.4 9.5 80 87-166 300-400 (438)
20 COG3579 PepC Aminopeptidase C 98.1 2.7E-06 5.8E-11 70.7 2.8 72 93-164 308-400 (444)
21 PF13529 Peptidase_C39_2: Pept 96.6 0.0074 1.6E-07 43.5 6.4 55 85-151 88-144 (144)
22 PF05543 Peptidase_C47: Stapho 92.5 0.74 1.6E-05 35.3 7.0 66 85-168 90-156 (175)
23 PF09778 Guanylate_cyc_2: Guan 92.2 0.76 1.6E-05 36.4 7.1 63 85-149 112-180 (212)
24 PF14399 Transpep_BrtH: NlpC/p 91.5 0.54 1.2E-05 39.0 6.0 57 85-149 77-133 (317)
25 KOG4128|consensus 85.5 0.075 1.6E-06 44.7 -3.0 80 85-164 305-412 (457)
26 COG4990 Uncharacterized protei 85.1 2.3 5E-05 32.8 5.0 47 85-152 122-168 (195)
27 cd00044 CysPc Calpains, domain 82.4 6.1 0.00013 33.0 7.0 28 126-153 234-263 (315)
28 PF12385 Peptidase_C70: Papain 80.9 4.7 0.0001 30.5 5.1 38 85-138 97-134 (166)
29 cd02549 Peptidase_C39A A sub-f 79.3 6.8 0.00015 27.9 5.7 45 89-151 70-114 (141)
30 PF01640 Peptidase_C10: Peptid 54.0 51 0.0011 25.5 6.1 53 86-162 140-192 (192)
31 smart00230 CysPc Calpain-like 52.5 34 0.00074 28.7 5.2 28 126-153 226-255 (318)
32 cd00585 Peptidase_C1B Peptidas 50.7 18 0.0004 31.9 3.4 31 28-58 130-160 (437)
33 PF03051 Peptidase_C1_2: Pepti 36.6 56 0.0012 28.9 4.2 30 29-58 132-161 (438)
34 PF09028 Mac-1: Mac 1; InterP 29.5 1.4E+02 0.0031 25.4 5.2 35 86-137 233-267 (333)
35 PF00648 Peptidase_C2: Calpain 29.2 51 0.0011 27.1 2.7 28 126-153 212-243 (298)
36 PLN00115 pollen allergen group 28.1 24 0.00051 25.4 0.4 16 141-156 56-73 (118)
37 PHA02678 hypothetical protein; 26.8 39 0.00085 22.7 1.3 44 144-192 7-55 (89)
38 smart00276 GLECT Galectin. Gal 24.6 44 0.00095 23.8 1.3 13 145-157 51-64 (128)
39 KOG4621|consensus 24.2 2.3E+02 0.005 20.8 4.9 76 85-165 58-144 (167)
40 PF07157 DNA_circ_N: DNA circu 23.7 1.3E+02 0.0027 20.6 3.4 43 52-99 31-79 (93)
41 PF09038 53-BP1_Tudor: Tumour 20.3 1.4E+02 0.0031 21.5 3.2 39 154-192 12-55 (122)
42 PF15528 Toxin_48: Putative to 20.3 40 0.00088 26.2 0.4 27 133-163 30-60 (189)
No 1
>KOG1542|consensus
Probab=100.00 E-value=5e-55 Score=355.89 Aligned_cols=177 Identities=38% Similarity=0.795 Sum_probs=167.1
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHH-HcCcccCcccccccCCCCCC-CccccCCCceeEec
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRNQNGVTG-RCAYDARKVKVRVS 78 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~-~C~~~~~~~~~~i~ 78 (192)
++|++++|++|++++||||||+||+..+.||+||.+..||+|++ ..|+..|++|||++ ..+ .|........+.|+
T Consensus 189 ~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g---~~~~~C~~~~~~~~v~I~ 265 (372)
T KOG1542|consen 189 AVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTG---KKGNQCHFDKSKIVVSIK 265 (372)
T ss_pred hhhhHHHhhcCcccccchhhhhcccCcCCcCCCCChhHHHHHHHHhCCccccccCCccc---cCCCccccchhhceEEEe
Confidence 68999999999999999999999999999999999999999955 89999999999999 666 89999999999999
Q ss_pred ceEEeC-ChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCC-CCCCCCCCCeEEEEEEEeecC-CccEEEEEcCCCCCC
Q psy5095 79 DFLVFN-GSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKN-DVCPSENLNHAVVIVGYGMRH-QVPVWIVRNSWGRWG 155 (192)
Q Consensus 79 ~~~~i~-~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~-~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~W 155 (192)
+|..++ ||++|.+.|.++|||+|+|++..+|+|.+||..+. ..|++..++|+|+|||||... .++|||||||||++|
T Consensus 266 ~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~W 345 (372)
T KOG1542|consen 266 DFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSW 345 (372)
T ss_pred ccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccc
Confidence 999999 99999999999999999999999999999999874 579988899999999999887 899999999999999
Q ss_pred CCCcEEEEEeCCCcccccceeeEEE
Q psy5095 156 PDDGYFTVERGTNACGIESYGGICT 180 (192)
Q Consensus 156 G~~Gy~~i~~~~n~cgi~~~~~~~~ 180 (192)
|++||+|+.||.|.|||++.++.+.
T Consensus 346 GE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 346 GEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred cccceEEEeccccccccccchhhhh
Confidence 9999999999999999999887654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.2e-51 Score=344.36 Aligned_cols=178 Identities=29% Similarity=0.605 Sum_probs=156.0
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHHH---cCcccCcccccccCCCCCCCccccCC-CceeE
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKH---AGLEAEADYPFRNQNGVTGRCAYDAR-KVKVR 76 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~---~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~ 76 (192)
+||++++|++++.++||+|||+||+..+.||+||++..||+|+++ .|+++|++|||...+...+.|..... ....+
T Consensus 158 aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~ 237 (348)
T PTZ00203 158 NIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGAR 237 (348)
T ss_pred HHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceE
Confidence 589999999999999999999999987889999999999999984 36899999999884333336864332 23567
Q ss_pred ecceEEeC-ChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCC
Q psy5095 77 VSDFLVFN-GSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWG 155 (192)
Q Consensus 77 i~~~~~i~-~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~W 155 (192)
+++|..+. ++++|+++|+++|||+++|++.+|++|++|||.. |.....+|||+|||||++++++|||||||||++|
T Consensus 238 i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~Y~~GIy~~---c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~W 314 (348)
T PTZ00203 238 IDGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTS---CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDW 314 (348)
T ss_pred ecceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcCccCceeec---cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCc
Confidence 88888887 8899999999999999999998899999999975 8765689999999999888999999999999999
Q ss_pred CCCcEEEEEeCCCcccccceeeEEEE
Q psy5095 156 PDDGYFTVERGTNACGIESYGGICTR 181 (192)
Q Consensus 156 G~~Gy~~i~~~~n~cgi~~~~~~~~~ 181 (192)
|++|||||+|+.|.|||+.+++.+..
T Consensus 315 Ge~GY~ri~rg~n~Cgi~~~~~~~~~ 340 (348)
T PTZ00203 315 GEKGYVRVTMGVNACLLTGYPVSVHV 340 (348)
T ss_pred CcCceEEEEcCCCcccccceEEEEec
Confidence 99999999999999999998888643
No 3
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=3.1e-51 Score=330.72 Aligned_cols=178 Identities=29% Similarity=0.514 Sum_probs=153.7
Q ss_pred CchhhHHHHhCC------CCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHHHcCcccCcccccccCCCCCCCccccC-CCc
Q psy5095 1 MLESQYAIKHGT------LLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCAYDA-RKV 73 (192)
Q Consensus 1 a~E~~~~i~~~~------~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~ 73 (192)
|||++++|++++ .+.||+|||+||+..+.||+||++..|++|++++|+++|++|||... ....|.... ...
T Consensus 37 ~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~--~~~~C~~~~~~~~ 114 (243)
T cd02621 37 ALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTAD--DDRPCKASPSECR 114 (243)
T ss_pred HHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHHHHHHHHhcCcCCCceeCCCCC--CCCCCCCCccccc
Confidence 589999998876 78999999999998788999999999999999999999999999862 356787644 334
Q ss_pred eeEecceEEe------CChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCC----CCC--------CCCCeEEEEE
Q psy5095 74 KVRVSDFLVF------NGSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDV----CPS--------ENLNHAVVIV 134 (192)
Q Consensus 74 ~~~i~~~~~i------~~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~----~~~--------~~~~Hav~iV 134 (192)
.+++..|..+ .++++||++|+++|||+++|++ ++|++|++|||+. .. |+. ..++|||+||
T Consensus 115 ~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~-~~~~~~C~~~~~~~~~~~~~~HaV~iV 193 (243)
T cd02621 115 RYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHH-TDNDEVSDGDNDNFNPFELTNHAVLLV 193 (243)
T ss_pred cccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECc-CCcccccccccccccCcccCCeEEEEE
Confidence 4455555544 3889999999999999999999 8999999999987 32 643 2479999999
Q ss_pred EEeecC--CccEEEEEcCCCCCCCCCcEEEEEeCCCcccccceeeEEEE
Q psy5095 135 GYGMRH--QVPVWIVRNSWGRWGPDDGYFTVERGTNACGIESYGGICTR 181 (192)
Q Consensus 135 Gyg~~~--g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~ 181 (192)
|||++. +.+|||||||||++||++|||||+|+.|.|||++.++++.|
T Consensus 194 Gyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~~ 242 (243)
T cd02621 194 GWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAYP 242 (243)
T ss_pred EeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeecc
Confidence 999876 89999999999999999999999999999999999988765
No 4
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=5.3e-51 Score=328.63 Aligned_cols=175 Identities=26% Similarity=0.473 Sum_probs=152.4
Q ss_pred CchhhHHHHhC---CCCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHHHcCcccCcccccccCCCCCCCcccc--------
Q psy5095 1 MLESQYAIKHG---TLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCAYD-------- 69 (192)
Q Consensus 1 a~E~~~~i~~~---~~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~-------- 69 (192)
+||++++|+++ ..+.||+|||+||+. +.||+||++..|++|++++|+++|++|||.. ....|...
T Consensus 39 aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a~~~~~~~Gl~~e~~yPY~~---~~~~C~~~~~~~~c~~ 114 (239)
T cd02698 39 ALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGVYEYAHKHGIPDETCNPYQA---KDGECNPFNRCGTCNP 114 (239)
T ss_pred HHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHHHHHHHHcCcCCCCeeCCcC---CCCCCcCCCCCCCccc
Confidence 58999999876 367999999999988 7899999999999999999999999999987 44445421
Q ss_pred -------CCCceeEecceEEeCChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecC-
Q psy5095 70 -------ARKVKVRVSDFLVFNGSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRH- 140 (192)
Q Consensus 70 -------~~~~~~~i~~~~~i~~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~- 140 (192)
.....+++++|..+.++++||++|+++|||+++|.+ ++|+.|++|||+. ..| ...++|||+|||||+++
T Consensus 115 ~~~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~-~~~-~~~~~HaV~IVGyG~~~~ 192 (239)
T cd02698 115 FGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKE-YVQ-DPLINHIISVAGWGVDEN 192 (239)
T ss_pred CcccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEcc-CCC-CCcCCeEEEEEEEEecCC
Confidence 112346777777777889999999999999999999 8999999999987 445 44589999999999776
Q ss_pred CccEEEEEcCCCCCCCCCcEEEEEeCC-----CcccccceeeEEEE
Q psy5095 141 QVPVWIVRNSWGRWGPDDGYFTVERGT-----NACGIESYGGICTR 181 (192)
Q Consensus 141 g~~ywivkNSWG~~WG~~Gy~~i~~~~-----n~cgi~~~~~~~~~ 181 (192)
+++|||||||||++||++|||||+|+. |+|+||+.+.++.|
T Consensus 193 g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~~ 238 (239)
T cd02698 193 GVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWADP 238 (239)
T ss_pred CCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEee
Confidence 899999999999999999999999999 99999999999876
No 5
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=7e-51 Score=327.38 Aligned_cols=176 Identities=26% Similarity=0.445 Sum_probs=150.3
Q ss_pred CchhhHHHHhC--CCCCCCHHHHhhhcCC-CCCCCCCCHHHHHHHHHHcCcccCcccccccCCCC---------------
Q psy5095 1 MLESQYAIKHG--TLLPLSKSQLIECNIY-NQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGV--------------- 62 (192)
Q Consensus 1 a~E~~~~i~~~--~~~~lS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~--------------- 62 (192)
|||++++|+++ +.+.||+|||+||+.. +.||+||++..||+|+++.|+++|++|||......
T Consensus 36 ~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~ 115 (236)
T cd02620 36 AFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYC 115 (236)
T ss_pred HHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCC
Confidence 58999999988 7899999999999987 78999999999999999999999999999873211
Q ss_pred CCCccccC----CCceeEecceEEeC-ChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCCCCCCCCeEEEEEEE
Q psy5095 63 TGRCAYDA----RKVKVRVSDFLVFN-GSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVCPSENLNHAVVIVGY 136 (192)
Q Consensus 63 ~~~C~~~~----~~~~~~i~~~~~i~-~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGy 136 (192)
...|.... ....+++..+..+. ++++||++|+++|||+++|.+ ++|+.|++|||+. .|+...++|||+||||
T Consensus 116 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~--~~~~~~~~HaV~iVGy 193 (236)
T cd02620 116 TPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQH--TSGKQLGGHAVKIIGW 193 (236)
T ss_pred CCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEee--cCCCCcCCeEEEEEEE
Confidence 01243221 12234555666665 789999999999999999999 8999999999987 4666668999999999
Q ss_pred eecCCccEEEEEcCCCCCCCCCcEEEEEeCCCcccccceeeE
Q psy5095 137 GMRHQVPVWIVRNSWGRWGPDDGYFTVERGTNACGIESYGGI 178 (192)
Q Consensus 137 g~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~ 178 (192)
|++++++|||||||||++||++|||||+|+.|.|||++.++.
T Consensus 194 g~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 194 GVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred eccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 988899999999999999999999999999999999998764
No 6
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.4e-50 Score=319.32 Aligned_cols=175 Identities=39% Similarity=0.821 Sum_probs=161.1
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCC-CCCCCCCCHHHHHHHHHHcCcccCcccccccCCCCCCCccccCCCceeEecc
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIY-NQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCAYDARKVKVRVSD 79 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~ 79 (192)
+||++++++++....||+|+|++|+.. +.+|+||++..||+++++.|+++|++|||.. ....|+.......+++++
T Consensus 32 ~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~---~~~~C~~~~~~~~~~i~~ 108 (210)
T cd02248 32 ALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNGGLASESDYPYTG---KDGTCKYNSSKVGAKITG 108 (210)
T ss_pred HHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHCCcCccccCCccC---CCCCccCCCCcccEEEee
Confidence 589999999999999999999999986 7899999999999999999999999999998 678898776677899999
Q ss_pred eEEeC--ChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCC
Q psy5095 80 FLVFN--GSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGP 156 (192)
Q Consensus 80 ~~~i~--~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG 156 (192)
|..+. ++++||++|+++|||+++|.+ ++|+.|++|||.. +.|....++|||+|||||++.+++|||||||||++||
T Consensus 109 ~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~-~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG 187 (210)
T cd02248 109 YSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSG-PCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWG 187 (210)
T ss_pred EEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeC-CCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccc
Confidence 99997 589999999999999999999 8999999999998 5554566899999999999889999999999999999
Q ss_pred CCcEEEEEeCCCcccccceeeEE
Q psy5095 157 DDGYFTVERGTNACGIESYGGIC 179 (192)
Q Consensus 157 ~~Gy~~i~~~~n~cgi~~~~~~~ 179 (192)
++|||||+++.|.|||+.++.+|
T Consensus 188 ~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 188 EKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred cCcEEEEEcCCCccCceeeeecC
Confidence 99999999999999999887664
No 7
>KOG1543|consensus
Probab=100.00 E-value=3.2e-50 Score=335.94 Aligned_cols=175 Identities=32% Similarity=0.630 Sum_probs=160.9
Q ss_pred CchhhHHHHhC-CCCCCCHHHHhhhcCC-CCCCCCCCHHHHHHHHHHcCccc-CcccccccCCCCCCCccccCCCceeEe
Q psy5095 1 MLESQYAIKHG-TLLPLSKSQLIECNIY-NQGCQGGGFNKAIQYLKHAGLEA-EADYPFRNQNGVTGRCAYDARKVKVRV 77 (192)
Q Consensus 1 a~E~~~~i~~~-~~~~lS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~i 77 (192)
|||++++|++| .+++||+|||+||+.. +.||+||.+..|++|++++|+++ +.+|||.. ....|........+.+
T Consensus 142 aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~yi~~~G~~t~~~~Ypy~~---~~~~C~~~~~~~~~~~ 218 (325)
T KOG1543|consen 142 ALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAFKYIKKNGGVTECENYPYIG---KDGTCKSNKKDKTVTI 218 (325)
T ss_pred HHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHHHHHHHhCCCCCCcCCCCcC---CCCCccCCCccceeEe
Confidence 68999999999 8999999999999986 88999999999999999888888 99999999 7779998877677778
Q ss_pred cceEEeC-ChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCC
Q psy5095 78 SDFLVFN-GSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWG 155 (192)
Q Consensus 78 ~~~~~i~-~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~W 155 (192)
.++..++ ++++|+++|+.+|||+++|.+ .+|+.|++|||.+ +.|....++|||+|||||+.++.+|||||||||+.|
T Consensus 219 ~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~-~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~W 297 (325)
T KOG1543|consen 219 KGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAE-EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDW 297 (325)
T ss_pred eeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeC-CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCc
Confidence 8888887 999999999999999999999 9999999999999 555543699999999999966789999999999999
Q ss_pred CCCcEEEEEeCCCcccccceeeEE
Q psy5095 156 PDDGYFTVERGTNACGIESYGGIC 179 (192)
Q Consensus 156 G~~Gy~~i~~~~n~cgi~~~~~~~ 179 (192)
|++|||||.|+.|.|+|+..+.+.
T Consensus 298 Ge~Gy~ri~r~~~~~~I~~~~~~~ 321 (325)
T KOG1543|consen 298 GEKGYFRIARGVNKCGIASEASYG 321 (325)
T ss_pred ccCceEEEecCCCchhhhcccccC
Confidence 999999999999999999988873
No 8
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=6.4e-49 Score=340.27 Aligned_cols=174 Identities=29% Similarity=0.597 Sum_probs=155.2
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHH-HcCcccCcccccccCCCC-CCCccccCCCceeEec
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLK-HAGLEAEADYPFRNQNGV-TGRCAYDARKVKVRVS 78 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~-~~~C~~~~~~~~~~i~ 78 (192)
|||++++|+++..+.||+|||+||+..+.||+||++..||+|++ ..|+++|++|||.+ . .+.|........+++.
T Consensus 298 alEs~~~I~~g~~v~LSeQqLVDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~---~~~~~C~~~~~~~~~~i~ 374 (489)
T PTZ00021 298 VVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVS---DTPELCNIDRCKEKYKIK 374 (489)
T ss_pred HHHHHHHHHcCCCcccCHHHHhhhccCCCCCCCcchHhhhhhhhhccccCcccccCccC---CCCCccccccccccceee
Confidence 58999999999999999999999998889999999999999997 55999999999987 4 4679866556678899
Q ss_pred ceEEeCChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecC----------CccEEEE
Q psy5095 79 DFLVFNGSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRH----------QVPVWIV 147 (192)
Q Consensus 79 ~~~~i~~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~----------g~~ywiv 147 (192)
+|..++ +++|+++|+.+|||+++|.+ ++|++|++|||+. .|+. ..+|||+|||||+++ +.+||||
T Consensus 375 ~y~~i~-~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~--~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIV 450 (489)
T PTZ00021 375 SYVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDG--ECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYII 450 (489)
T ss_pred eEEEec-HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCC--CCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEE
Confidence 998885 67899999999999999999 8999999999986 6876 479999999999653 2479999
Q ss_pred EcCCCCCCCCCcEEEEEeCC----CcccccceeeEEEE
Q psy5095 148 RNSWGRWGPDDGYFTVERGT----NACGIESYGGICTR 181 (192)
Q Consensus 148 kNSWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~ 181 (192)
|||||++||++|||||+|+. |.|||...+.+|+.
T Consensus 451 KNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 451 KNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLI 488 (489)
T ss_pred ECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence 99999999999999999986 58999999999864
No 9
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.2e-48 Score=342.16 Aligned_cols=191 Identities=21% Similarity=0.360 Sum_probs=158.5
Q ss_pred CchhhHHHHhC------CCCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHHHcCcccCccc--ccccCCCCCCCccccCCC
Q psy5095 1 MLESQYAIKHG------TLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADY--PFRNQNGVTGRCAYDARK 72 (192)
Q Consensus 1 a~E~~~~i~~~------~~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~C~~~~~~ 72 (192)
|||++++|+++ +.+.||+|||+||+..++||+||++..|++|++++|+++|++| ||...+.....|......
T Consensus 243 alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~ 322 (548)
T PTZ00364 243 AMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPS 322 (548)
T ss_pred HHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCCcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCccc
Confidence 58999999984 4689999999999987899999999999999999999999999 998743333468765544
Q ss_pred ceeEecceE------EeC-ChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCC-------CCCC----------CCCC
Q psy5095 73 VKVRVSDFL------VFN-GSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKN-------DVCP----------SENL 127 (192)
Q Consensus 73 ~~~~i~~~~------~i~-~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~-------~~~~----------~~~~ 127 (192)
..++++.+. .+. ++++||++|+++|||+++|++ ++|+.|++|||... ..|. ....
T Consensus 323 ~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (548)
T PTZ00364 323 RRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNV 402 (548)
T ss_pred ceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccC
Confidence 444444443 333 788999999999999999999 89999999998620 1121 1357
Q ss_pred CeEEEEEEEee-cCCccEEEEEcCCCC--CCCCCcEEEEEeCCCcccccceeeEEEEeeccceEeeC
Q psy5095 128 NHAVVIVGYGM-RHQVPVWIVRNSWGR--WGPDDGYFTVERGTNACGIESYGGICTRTLNGVFLLLN 191 (192)
Q Consensus 128 ~Hav~iVGyg~-~~g~~ywivkNSWG~--~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~~~~~~~~~~ 191 (192)
+|||+|||||. ++|.+|||||||||+ +|||+|||||+|+.|+||||+.++.+.+.+.+.++--|
T Consensus 403 nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~~~~~~~~~~~ 469 (548)
T PTZ00364 403 NHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYWAPYPDVLHPE 469 (548)
T ss_pred CeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeeeecCCCccCCC
Confidence 99999999995 578899999999999 99999999999999999999999998888877776544
No 10
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.3e-48 Score=335.27 Aligned_cols=173 Identities=33% Similarity=0.620 Sum_probs=151.9
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCCCCCCCCCCHHHHHHHHHHcCcccCcccccccCCCCCCCccccCCCceeEecce
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCAYDARKVKVRVSDF 80 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~ 80 (192)
|||++++|+++..+.||+|||+||+..+.||+||++..||+|++++|+++|++|||.+ ..+.|.... ...+++.+|
T Consensus 267 aiEs~~~i~~~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~---~~~~C~~~~-~~~~~i~~y 342 (448)
T PTZ00200 267 SVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNKGLSSSSDVPYLA---KDGKCVVSS-TKKVYIDSY 342 (448)
T ss_pred HHHHHHHHhcCCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhcCccccccCCCCC---CCCCCcCCC-CCeeEecce
Confidence 5899999999999999999999999878899999999999999999999999999998 778898643 334668888
Q ss_pred EEeCChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCCCCCCCCeEEEEEEEee--cCCccEEEEEcCCCCCCCC
Q psy5095 81 LVFNGSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGM--RHQVPVWIVRNSWGRWGPD 157 (192)
Q Consensus 81 ~~i~~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNSWG~~WG~ 157 (192)
..+.+.+.+++++ ..|||+++|.+ ++|+.|++|||+. .|+.. ++|||+|||||. ++|.+|||||||||++||+
T Consensus 343 ~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~--~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe 418 (448)
T PTZ00200 343 LVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNG--ECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGE 418 (448)
T ss_pred EecCHHHHHHHHH-hcCCEEEEeecccccccCCCCcccc--ccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCCccc
Confidence 7665555566665 48999999999 8999999999987 68764 899999999983 4688999999999999999
Q ss_pred CcEEEEEeC---CCcccccceeeEEEE
Q psy5095 158 DGYFTVERG---TNACGIESYGGICTR 181 (192)
Q Consensus 158 ~Gy~~i~~~---~n~cgi~~~~~~~~~ 181 (192)
+|||||+|+ .|.|||++.+.+|+.
T Consensus 419 ~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 419 NGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred CeeEEEEeCCCCCCcCCccccceeeEE
Confidence 999999996 489999999999875
No 11
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.8e-47 Score=302.29 Aligned_cols=176 Identities=35% Similarity=0.655 Sum_probs=156.7
Q ss_pred CchhhHHHHh-CCCCCCCHHHHhhhcC-CCCCCCCCCHHHHHHHHHH-cCcccCcccccccCCCCC-CCccccCCCc-ee
Q psy5095 1 MLESQYAIKH-GTLLPLSKSQLIECNI-YNQGCQGGGFNKAIQYLKH-AGLEAEADYPFRNQNGVT-GRCAYDARKV-KV 75 (192)
Q Consensus 1 a~E~~~~i~~-~~~~~lS~Q~l~dC~~-~~~gC~GG~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~-~~C~~~~~~~-~~ 75 (192)
++|++++++. +..++||+|+|++|.. .+.+|+||++..|++++++ .|+++|++|||.. .. ..|....... .+
T Consensus 34 ~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~pY~~---~~~~~c~~~~~~~~~~ 110 (219)
T PF00112_consen 34 ALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKNNNGIVTEEDYPYNG---NENPTCKSKKSNSYYV 110 (219)
T ss_dssp HHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHHHTSBEBTTTS--SS---SSSCSSCHSGGGEEEB
T ss_pred ceeccccccccccccccccccccccccccccccccCcccccceeecccCcccccccccccc---cccccccccccccccc
Confidence 4899999998 7889999999999998 5789999999999999998 9999999999998 55 6788764443 47
Q ss_pred EecceEEeC--ChHHHHHHHHhcCCEEEEEeC-C-cccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCC
Q psy5095 76 RVSDFLVFN--GSDTFRRMLYHYGPLVAGMNG-A-LLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW 151 (192)
Q Consensus 76 ~i~~~~~i~--~~~~ik~~l~~~gPv~~~~~~-~-~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 151 (192)
++..|..+. ++++||++|+++|||+++|.+ + +|+.|++|||.. +.|....++|||+|||||++.+++||||||||
T Consensus 111 ~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~-~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSW 189 (219)
T PF00112_consen 111 KIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDP-PDCSNESGGHAVLIVGYDDENGKGYWIVKNSW 189 (219)
T ss_dssp EESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECS-TSSSSSSEEEEEEEEEEEEETTEEEEEEE-SB
T ss_pred cccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeec-cccccccccccccccccccccceeeEeeehhh
Confidence 888998887 599999999999999999999 7 699999999998 66777789999999999999999999999999
Q ss_pred CCCCCCCcEEEEEeCCC-cccccceeeEEE
Q psy5095 152 GRWGPDDGYFTVERGTN-ACGIESYGGICT 180 (192)
Q Consensus 152 G~~WG~~Gy~~i~~~~n-~cgi~~~~~~~~ 180 (192)
|++||++|||||+|+.+ +|+|++.+++|+
T Consensus 190 G~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 190 GTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp TTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred CCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 99999999999999997 999999999985
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=2.9e-47 Score=337.26 Aligned_cols=181 Identities=28% Similarity=0.536 Sum_probs=150.4
Q ss_pred CchhhHHHHhCCC----------CCCCHHHHhhhcCCCCCCCCCCHHHHHHHHHHcCcccCcccccccCCCCCCCccccC
Q psy5095 1 MLESQYAIKHGTL----------LPLSKSQLIECNIYNQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQNGVTGRCAYDA 70 (192)
Q Consensus 1 a~E~~~~i~~~~~----------~~lS~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~ 70 (192)
+||+|++|++++. ..||+|+|+||+..++||+||++..|++|+++.||++|++|||.+ ..+.|+...
T Consensus 417 alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC~GG~~~~A~kya~~~GI~tEscYPY~a---~~g~C~~~~ 493 (693)
T PTZ00049 417 AFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGCNGGFPYLVSKMAKLQGIPLDKVFPYTA---TEQTCPYQV 493 (693)
T ss_pred HHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCcCCCcHHHHHHHHHHCCCCcCCccCCcC---CCCCCCCCC
Confidence 5899999986432 279999999999888999999999999999999999999999987 556665321
Q ss_pred C---------------------------------------CceeEecceEEeC---------ChHHHHHHHHhcCCEEEE
Q psy5095 71 R---------------------------------------KVKVRVSDFLVFN---------GSDTFRRMLYHYGPLVAG 102 (192)
Q Consensus 71 ~---------------------------------------~~~~~i~~~~~i~---------~~~~ik~~l~~~gPv~~~ 102 (192)
. ..++++++|..+. ++++||++|+.+|||+++
T Consensus 494 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVs 573 (693)
T PTZ00049 494 DQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVAS 573 (693)
T ss_pred CCccccccccccccccccccccccccccccccccccccccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEE
Confidence 1 1123455665552 688999999999999999
Q ss_pred EeC-CcccCCCCceEeCCC-----CCCCC--------------CCCeEEEEEEEeec--CCc--cEEEEEcCCCCCCCCC
Q psy5095 103 MNG-ALLQDYNGKLIRKND-----VCPSE--------------NLNHAVVIVGYGMR--HQV--PVWIVRNSWGRWGPDD 158 (192)
Q Consensus 103 ~~~-~~f~~y~~Giy~~~~-----~~~~~--------------~~~Hav~iVGyg~~--~g~--~ywivkNSWG~~WG~~ 158 (192)
|++ ++|++|++|||+.++ .|+.. ..+|||+|||||.+ +|. +|||||||||+.||++
T Consensus 574 Ida~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGen 653 (693)
T PTZ00049 574 FEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKE 653 (693)
T ss_pred EEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccC
Confidence 999 799999999998621 36432 36999999999964 453 7999999999999999
Q ss_pred cEEEEEeCCCcccccceeeEEEEeec
Q psy5095 159 GYFTVERGTNACGIESYGGICTRTLN 184 (192)
Q Consensus 159 Gy~~i~~~~n~cgi~~~~~~~~~~~~ 184 (192)
|||||+|+.|.|||+++++++.|.+.
T Consensus 654 GYfKI~RG~N~CGIEs~a~~~~pd~~ 679 (693)
T PTZ00049 654 GYFKIIRGKNFSGIESQSLFIEPDFS 679 (693)
T ss_pred ceEEEEcCCCccCCccceeEEeeecc
Confidence 99999999999999999999988753
No 13
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3e-41 Score=306.67 Aligned_cols=185 Identities=22% Similarity=0.402 Sum_probs=148.1
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCC--CCCCCCCC-HHHHHHHHHHc-CcccCcccccccCCCCCCCccccCC-----
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIY--NQGCQGGG-FNKAIQYLKHA-GLEAEADYPFRNQNGVTGRCAYDAR----- 71 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~--~~gC~GG~-~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~----- 71 (192)
|+|++++|+++..+.||+|+|+||+.. +.||.||+ +..++.|+++. |+++|++|||.... ..+.|+....
T Consensus 564 aLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPYt~k~-~~g~Cp~~~~~w~n~ 642 (1004)
T PTZ00462 564 HLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLYNYTK-VGEDCPDEEDHWMNL 642 (1004)
T ss_pred HHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCCccCC-CCCCCCCCccccccc
Confidence 589999999999999999999999864 67999997 55566999865 58999999997411 3456864321
Q ss_pred -------------CceeEecceEEeCC----------hHHHHHHHHhcCCEEEEEeCCcccCC-CCceEeCCCCCCCCCC
Q psy5095 72 -------------KVKVRVSDFLVFNG----------SDTFRRMLYHYGPLVAGMNGALLQDY-NGKLIRKNDVCPSENL 127 (192)
Q Consensus 72 -------------~~~~~i~~~~~i~~----------~~~ik~~l~~~gPv~~~~~~~~f~~y-~~Giy~~~~~~~~~~~ 127 (192)
...+.+.+|..+.. ++.||++|+++|||+++|++.+|+.| .+|||.. ..|+....
T Consensus 643 ~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAsdf~~Y~~sGIyv~-~~Cgs~~~ 721 (1004)
T PTZ00462 643 LDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQ-NLCGDDTA 721 (1004)
T ss_pred ccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEeehHHhhhcCCcccc-CCCCCCcC
Confidence 11233455655531 46899999999999999999778888 4898776 57987678
Q ss_pred CeEEEEEEEeec-----CCccEEEEEcCCCCCCCCCcEEEEEe-CCCcccccceeeEEEEeeccce
Q psy5095 128 NHAVVIVGYGMR-----HQVPVWIVRNSWGRWGPDDGYFTVER-GTNACGIESYGGICTRTLNGVF 187 (192)
Q Consensus 128 ~Hav~iVGyg~~-----~g~~ywivkNSWG~~WG~~Gy~~i~~-~~n~cgi~~~~~~~~~~~~~~~ 187 (192)
+|||+|||||.+ ++++|||||||||+.||++|||||.| +.|.|||.....+++++++-.+
T Consensus 722 nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~fn~d~~~ 787 (1004)
T PTZ00462 722 DHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIFNIDLPK 787 (1004)
T ss_pred CceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeEeecccc
Confidence 999999999953 25789999999999999999999998 6799999999999998876443
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=1.1e-40 Score=263.83 Aligned_cols=164 Identities=29% Similarity=0.411 Sum_probs=141.5
Q ss_pred CchhhHHHHhC--CCCCCCHHHHhhhcCCC-----CCCCCCCHHHHHH-HHHHcCcccCcccccccCCCCCCCccc----
Q psy5095 1 MLESQYAIKHG--TLLPLSKSQLIECNIYN-----QGCQGGGFNKAIQ-YLKHAGLEAEADYPFRNQNGVTGRCAY---- 68 (192)
Q Consensus 1 a~E~~~~i~~~--~~~~lS~Q~l~dC~~~~-----~gC~GG~~~~a~~-~~~~~Gi~~e~~yPY~~~~~~~~~C~~---- 68 (192)
++|++++++++ +.++||+|+|++|.... .+|+||++..++. ++++.|+++|++|||.. ....|..
T Consensus 29 ~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~Gi~~e~~~Py~~---~~~~~~~~~~~ 105 (223)
T cd02619 29 ALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPPEEDYPYGA---ESDGEEPKSEA 105 (223)
T ss_pred HHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHcCCCccccCCCCC---CCCCCCCCCcc
Confidence 58999999987 88999999999998753 6999999999998 88899999999999998 4444432
Q ss_pred cCCCceeEecceEEeC--ChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEe----CCCCCCCCCCCeEEEEEEEeecC-
Q psy5095 69 DARKVKVRVSDFLVFN--GSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIR----KNDVCPSENLNHAVVIVGYGMRH- 140 (192)
Q Consensus 69 ~~~~~~~~i~~~~~i~--~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~----~~~~~~~~~~~Hav~iVGyg~~~- 140 (192)
......+++..|..+. ++++||++|+++|||+++|.+ +.|..|++|++. ....+....++|||+|||||++.
T Consensus 106 ~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~ 185 (223)
T cd02619 106 ALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV 185 (223)
T ss_pred chhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCC
Confidence 2344568889998887 689999999999999999999 899999999873 21345566799999999999876
Q ss_pred -CccEEEEEcCCCCCCCCCcEEEEEeCC
Q psy5095 141 -QVPVWIVRNSWGRWGPDDGYFTVERGT 167 (192)
Q Consensus 141 -g~~ywivkNSWG~~WG~~Gy~~i~~~~ 167 (192)
+++|||||||||+.||++||+||+++.
T Consensus 186 ~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 186 EGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred CCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 899999999999999999999999975
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=8.7e-41 Score=257.28 Aligned_cols=134 Identities=42% Similarity=0.804 Sum_probs=120.1
Q ss_pred CchhhHHHHhCCCCCCCHHHHhhhcCC-CCCCCCCCHHHHHHHHHHc-CcccCcccccccCCCCCCCccccCCCceeEec
Q psy5095 1 MLESQYAIKHGTLLPLSKSQLIECNIY-NQGCQGGGFNKAIQYLKHA-GLEAEADYPFRNQNGVTGRCAYDARKVKVRVS 78 (192)
Q Consensus 1 a~E~~~~i~~~~~~~lS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~ 78 (192)
|+|+++++++++.++||+|+|+||+.. +.||+||++..|++|+++. |+++|++|||+.
T Consensus 33 ~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~~-------------------- 92 (174)
T smart00645 33 ALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNGGLETESCYPYTG-------------------- 92 (174)
T ss_pred HHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcCCcccccccCccc--------------------
Confidence 589999999999999999999999975 6799999999999999987 999999999964
Q ss_pred ceEEeCChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEeec-CCccEEEEEcCCCCCCCC
Q psy5095 79 DFLVFNGSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMR-HQVPVWIVRNSWGRWGPD 157 (192)
Q Consensus 79 ~~~~i~~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~ 157 (192)
++.+.+.+|++|++|||+. +.|+....+|+|+|||||.+ ++++|||||||||+.||+
T Consensus 93 ---------------------~~~~~~~~f~~Y~~Gi~~~-~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~ 150 (174)
T smart00645 93 ---------------------SVAIDASDFQFYKSGIYDH-PGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGE 150 (174)
T ss_pred ---------------------EEEEEcccccCCcCeEECC-CCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCccc
Confidence 5555666799999999987 56776558999999999976 889999999999999999
Q ss_pred CcEEEEEeCC-Cccccccee
Q psy5095 158 DGYFTVERGT-NACGIESYG 176 (192)
Q Consensus 158 ~Gy~~i~~~~-n~cgi~~~~ 176 (192)
+|||||.|+. |.|+|+...
T Consensus 151 ~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 151 NGYFRIARGKNNECGIEASV 170 (174)
T ss_pred CeEEEEEcCCCCccCceeee
Confidence 9999999998 999997654
No 16
>KOG1544|consensus
Probab=100.00 E-value=9.6e-38 Score=252.74 Aligned_cols=177 Identities=28% Similarity=0.484 Sum_probs=142.2
Q ss_pred hHHHHh-CC-CCCCCHHHHhhhcCC-CCCCCCCCHHHHHHHHHHcCcccCcccccccCC-CCCCCcc-------------
Q psy5095 5 QYAIKH-GT-LLPLSKSQLIECNIY-NQGCQGGGFNKAIQYLKHAGLEAEADYPFRNQN-GVTGRCA------------- 67 (192)
Q Consensus 5 ~~~i~~-~~-~~~lS~Q~l~dC~~~-~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~-~~~~~C~------------- 67 (192)
|++|.. |+ ...||+|+|++|... .+||+||++.+|+-|+.+.|++...||||.... ...+.|.
T Consensus 247 RiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqa 326 (470)
T KOG1544|consen 247 RVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQA 326 (470)
T ss_pred eeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecccccccccccccCCCCCCCCCceeeccccCcccccc
Confidence 445543 33 468999999999876 689999999999999999999999999998732 2233343
Q ss_pred -----cc--CCCceeEecceEEeC-ChHHHHHHHHhcCCEEEEEeC-CcccCCCCceEeCCCCC------CCCCCCeEEE
Q psy5095 68 -----YD--ARKVKVRVSDFLVFN-GSDTFRRMLYHYGPLVAGMNG-ALLQDYNGKLIRKNDVC------PSENLNHAVV 132 (192)
Q Consensus 68 -----~~--~~~~~~~i~~~~~i~-~~~~ik~~l~~~gPv~~~~~~-~~f~~y~~Giy~~~~~~------~~~~~~Hav~ 132 (192)
.. .+...++.+.-+.+. ++++|+++|+++|||.+.|.+ ++|+.|++|||++.+.. ....+.|+|.
T Consensus 327 t~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk 406 (470)
T KOG1544|consen 327 TAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVK 406 (470)
T ss_pred cCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEE
Confidence 21 122356666656665 999999999999999999999 99999999999983111 1134889999
Q ss_pred EEEEeecC-----CccEEEEEcCCCCCCCCCcEEEEEeCCCcccccceeeEEEE
Q psy5095 133 IVGYGMRH-----QVPVWIVRNSWGRWGPDDGYFTVERGTNACGIESYGGICTR 181 (192)
Q Consensus 133 iVGyg~~~-----g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~ 181 (192)
|.|||++. ..+||+..||||+.||++|||||.||.|+|.||+.++.+..
T Consensus 407 ~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgAWG 460 (470)
T KOG1544|consen 407 ITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGAWG 460 (470)
T ss_pred EeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhhhh
Confidence 99999653 25799999999999999999999999999999998876543
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.3e-19 Score=146.38 Aligned_cols=128 Identities=24% Similarity=0.325 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHH-HcCcccCcccccccCCCCCCCccccCCCceeEecceEEeC------ChHHHHHHHHhcCCEEEEEeC
Q psy5095 33 GGGFNKAIQYLK-HAGLEAEADYPFRNQNGVTGRCAYDARKVKVRVSDFLVFN------GSDTFRRMLYHYGPLVAGMNG 105 (192)
Q Consensus 33 GG~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~i~------~~~~ik~~l~~~gPv~~~~~~ 105 (192)
||....+..|+. ..|-+.|.+-||.. ..-.|... .+...++.....++ +.-.||+++..+|-+...|.+
T Consensus 168 ~g~~~m~~a~l~e~sgpv~et~d~y~~---~s~~~~~~-~p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~i 243 (372)
T COG4870 168 GGNADMSAAYLTEWSGPVYETDDPYSE---NSYFSPTN-LPVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYI 243 (372)
T ss_pred CCccccccccccccCCcchhhcCcccc---ccccCCcC-CchhhccccceecccchhhhcccchHHHHhhhccccceeEE
Confidence 667776666666 78899999999987 33333321 11111222222222 555688888889988866666
Q ss_pred --CcccCCCCceEeCCCCCCCCCCCeEEEEEEEeec----------CCccEEEEEcCCCCCCCCCcEEEEEeCC
Q psy5095 106 --ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMR----------HQVPVWIVRNSWGRWGPDDGYFTVERGT 167 (192)
Q Consensus 106 --~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~----------~g~~ywivkNSWG~~WG~~Gy~~i~~~~ 167 (192)
..+....-+.|.. -+....+|||+||||+|. .|.++||||||||+.||++|||||++..
T Consensus 244 d~~~~~~~~~~~~~~---~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 244 DATNSLGICIPYPYV---DSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred ecccccccccCCCCC---CccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 3333323344433 222568999999999973 3577999999999999999999999976
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.76 E-value=1.9e-18 Score=149.02 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=66.6
Q ss_pred ChHHHH----HHHHhcCCEEEEEeCCcccCCCCceEeCCC-------------------CCCCCCCCeEEEEEEEee-cC
Q psy5095 85 GSDTFR----RMLYHYGPLVAGMNGALLQDYNGKLIRKND-------------------VCPSENLNHAVVIVGYGM-RH 140 (192)
Q Consensus 85 ~~~~ik----~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~-------------------~~~~~~~~Hav~iVGyg~-~~ 140 (192)
..++|+ ++|..++||.+++++..|+.|++||++... .|.....+|||+|||||. ++
T Consensus 293 p~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~ 372 (437)
T cd00585 293 PMDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDED 372 (437)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCC
Confidence 455555 677889999999999767899999996510 133445789999999995 44
Q ss_pred Cc-cEEEEEcCCCCCCCCCcEEEEEeC
Q psy5095 141 QV-PVWIVRNSWGRWGPDDGYFTVERG 166 (192)
Q Consensus 141 g~-~ywivkNSWG~~WG~~Gy~~i~~~ 166 (192)
|+ .||+|+||||+.||++||++|+++
T Consensus 373 g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 373 GKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCcceEEEEcccCCCCCCCcceehhHH
Confidence 76 699999999999999999999875
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.19 E-value=1e-10 Score=101.36 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCC-------------------CCCCCCCCeEEEEEEEe-ecCCc-cEE
Q psy5095 87 DTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKND-------------------VCPSENLNHAVVIVGYG-MRHQV-PVW 145 (192)
Q Consensus 87 ~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~-------------------~~~~~~~~Hav~iVGyg-~~~g~-~yw 145 (192)
+.+.++|..+-||..+-++..+...+.||.+... .......+|||+|+|.+ +++|+ .+|
T Consensus 300 ~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~w 379 (438)
T PF03051_consen 300 DAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVRW 379 (438)
T ss_dssp HHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEEE
T ss_pred HHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeEE
Confidence 4456678888899999999445566788876520 11123468999999999 47776 499
Q ss_pred EEEcCCCCCCCCCcEEEEEeC
Q psy5095 146 IVRNSWGRWGPDDGYFTVERG 166 (192)
Q Consensus 146 ivkNSWG~~WG~~Gy~~i~~~ 166 (192)
+|+||||+..|.+||+.|+..
T Consensus 380 kVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 380 KVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp EEE-SBTTTSTBTTEEEEEHH
T ss_pred EEEcCCCCCCCCCcEEEECHH
Confidence 999999999999999999753
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.05 E-value=2.7e-06 Score=70.70 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=54.8
Q ss_pred HHhcCCEEEEEeCCcccCCCCceEeCC----C---------------CCCCCCCCeEEEEEEEe-ecCCcc-EEEEEcCC
Q psy5095 93 LYHYGPLVAGMNGALLQDYNGKLIRKN----D---------------VCPSENLNHAVVIVGYG-MRHQVP-VWIVRNSW 151 (192)
Q Consensus 93 l~~~gPv~~~~~~~~f~~y~~Giy~~~----~---------------~~~~~~~~Hav~iVGyg-~~~g~~-ywivkNSW 151 (192)
|..+-||-++-++..+..-+.||...+ + ..+.....|||+|.|.+ +++|.+ -|.|.|||
T Consensus 308 ~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkVENSW 387 (444)
T COG3579 308 MQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKVENSW 387 (444)
T ss_pred HhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEeeccc
Confidence 455778999998877888888876542 0 11112357999999999 666554 79999999
Q ss_pred CCCCCCCcEEEEE
Q psy5095 152 GRWGPDDGYFTVE 164 (192)
Q Consensus 152 G~~WG~~Gy~~i~ 164 (192)
|..=|.+|||-++
T Consensus 388 G~d~G~~GyfvaS 400 (444)
T COG3579 388 GKDVGKKGYFVAS 400 (444)
T ss_pred ccccCCCceEeeh
Confidence 9999999999875
No 21
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.65 E-value=0.0074 Score=43.49 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhcCCEEEEEeC--CcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCC
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNG--ALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW 151 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~--~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 151 (192)
+.+.|+++|.++.||.+.+.. ... ....+.. ...+|.|+|+||++.. +++|..+|
T Consensus 88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~~------~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 88 SFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYDG------TYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp -HHHHHHHHHTT--EEEEEETTSS-----TTEEEEE-------TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred cHHHHHHHHHCCCcEEEEEEcccccC---CCCCcCC------CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 889999999999999999974 111 1222222 2479999999998532 78888776
No 22
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=92.46 E-value=0.74 Score=35.29 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEee-cCCccEEEEEcCCCCCCCCCcEEEE
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGM-RHQVPVWIVRNSWGRWGPDDGYFTV 163 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~~WG~~Gy~~i 163 (192)
+.+++++.+.++-|+.+.... . ........+||++||||-. .+|.++.++=|-| +++++-+
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~------------v-~~~~~~~~gHAlavvGya~~~~g~~~y~~WNPW-----~~~~~~~ 151 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADR------------V-EQTNGPHAGHALAVVGYAKPNNGQKTYYFWNPW-----WNDVMIQ 151 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEE------------T-TSCTTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EEE
T ss_pred CHHHHHHHHHcCCCeEEEecc------------c-ccCCCCccceeEEEEeeeecCCCCeEEEEeCCc-----cCCcEEE
Confidence 789999999988888876642 0 1112335799999999986 5568999999988 4556666
Q ss_pred EeCCC
Q psy5095 164 ERGTN 168 (192)
Q Consensus 164 ~~~~n 168 (192)
+...+
T Consensus 152 sa~s~ 156 (175)
T PF05543_consen 152 SAKSN 156 (175)
T ss_dssp ETT--
T ss_pred ecCCC
Confidence 65543
No 23
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=92.24 E-value=0.76 Score=36.42 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhcCCEEEEEeCCccc--CCCCceEeCC-CCC---CCCCCCeEEEEEEEeecCCccEEEEEc
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNGALLQ--DYNGKLIRKN-DVC---PSENLNHAVVIVGYGMRHQVPVWIVRN 149 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~~~f~--~y~~Giy~~~-~~~---~~~~~~Hav~iVGyg~~~g~~ywivkN 149 (192)
+.++|..+|..+||+.+-++..-.. .-+.-..... ..| +....+|-|+|+||+.. .+-+++||
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~--~~~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA--TKEFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCC--CCeEEEeC
Confidence 8999999999999888888762221 0011111100 111 23457999999999943 33466666
No 24
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=91.49 E-value=0.54 Score=39.00 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=36.4
Q ss_pred ChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEc
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRN 149 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN 149 (192)
-.+.|++.|.++.||.+.++.-.+ .|...-| ......|.++|+||+++ ++.+.++-+
T Consensus 77 ~~~~l~~~l~~g~pv~~~~D~~~l-py~~~~~------~~~~~~H~i~v~G~d~~-~~~~~v~D~ 133 (317)
T PF14399_consen 77 AWEELKEALDAGRPVIVWVDMYYL-PYRPNYY------KKHHADHYIVVYGYDEE-EDVFYVSDP 133 (317)
T ss_pred HHHHHHHHHhCCCceEEEeccccC-CCCcccc------ccccCCcEEEEEEEeCC-CCEEEEEcC
Confidence 456889999987799999765111 1221111 23347899999999964 344555543
No 25
>KOG4128|consensus
Probab=85.50 E-value=0.075 Score=44.68 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=51.2
Q ss_pred ChHHHHHHH----HhcCCEEEEEeCCcccCCCCceEe-----CC-------CCCC--------CCCCCeEEEEEEEe-ec
Q psy5095 85 GSDTFRRML----YHYGPLVAGMNGALLQDYNGKLIR-----KN-------DVCP--------SENLNHAVVIVGYG-MR 139 (192)
Q Consensus 85 ~~~~ik~~l----~~~gPv~~~~~~~~f~~y~~Giy~-----~~-------~~~~--------~~~~~Hav~iVGyg-~~ 139 (192)
+.+-|++.+ ...-||-++-++..+..-++|..+ .+ +... ...-.||+++.|-+ .+
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~kd 384 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIRKAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGLKD 384 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccHhhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccccC
Confidence 556666554 345677777777555555666432 11 1111 11256999999999 22
Q ss_pred ---CCccEEEEEcCCCCCCCCCcEEEEE
Q psy5095 140 ---HQVPVWIVRNSWGRWGPDDGYFTVE 164 (192)
Q Consensus 140 ---~g~~ywivkNSWG~~WG~~Gy~~i~ 164 (192)
.+-.-|.|.||||++-|.+|+..|.
T Consensus 385 ~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 385 PATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cccCCchhhhhhchhhhhccccchhhhh
Confidence 2334699999999999999997664
No 26
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.07 E-value=2.3 Score=32.83 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCC
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWG 152 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 152 (192)
++.+||..|.++.||.+-... |.. ..-|+|+|+||+ +.++..-++||
T Consensus 122 sl~~ik~ql~kg~PV~iw~T~--~~~---------------~s~H~v~itgyD----k~n~yynDpyG 168 (195)
T COG4990 122 SLSDIKGQLLKGRPVVIWVTN--FHS---------------YSIHSVLITGYD----KYNIYYNDPYG 168 (195)
T ss_pred cHHHHHHHHhcCCcEEEEEec--ccc---------------cceeeeEeeccc----ccceEeccccc
Confidence 899999999999999876642 211 357999999998 44566667774
No 27
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=82.35 E-value=6.1 Score=33.02 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCCeEEEEEEEeecC--CccEEEEEcCCCC
Q psy5095 126 NLNHAVVIVGYGMRH--QVPVWIVRNSWGR 153 (192)
Q Consensus 126 ~~~Hav~iVGyg~~~--g~~ywivkNSWG~ 153 (192)
..+||-.|++....+ +.+.-.+||.||.
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccC
Confidence 368999999999666 7889999999994
No 28
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=80.86 E-value=4.7 Score=30.50 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=28.7
Q ss_pred ChHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEee
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGM 138 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~ 138 (192)
+.+.++..|.++||+-++... + ......|+++|.|-+.
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~---------------P-~~~~~~H~~ViTGI~~ 134 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEA---------------P-GDSWVAHASVITGIDG 134 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecC---------------C-CCcceeeEEEEEeecC
Confidence 789999999999999998643 1 1222468888888874
No 29
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=79.32 E-value=6.8 Score=27.94 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=31.5
Q ss_pred HHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCC
Q psy5095 89 FRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSW 151 (192)
Q Consensus 89 ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 151 (192)
+++.|.+..||.+.+..+ . .....+|.|+|+||+ ..+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~-----------~----~~~~~gH~vVv~g~~---~~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG-----------V----SITPSGHAMVVIGYD---RKGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC-----------c----ccCCCCeEEEEEEEc---CCCCEEEECCC
Confidence 788899999999887540 0 112378999999997 12336677765
No 30
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=53.96 E-value=51 Score=25.46 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=31.9
Q ss_pred hHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCCCCcEEE
Q psy5095 86 SDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYGMRHQVPVWIVRNSWGRWGPDDGYFT 162 (192)
Q Consensus 86 ~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~ 162 (192)
.+.|+.+|.++.||...-. -. ..+||-+|=||. ...|+-+-=.||-. .+||++
T Consensus 140 ~~~i~~el~~~rPV~~~g~-----------~~--------~~GHawViDGy~---~~~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGN-----------SK--------SGGHAWVIDGYD---SDGYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHHTT--EEEEEE-----------ET--------TEEEEEEEEEEE---SSSEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEe-----------cC--------CCCeEEEEcCcc---CCCeEEEeeCccCC--CCCccC
Confidence 3568888888899875531 11 129999999995 45566554444322 578875
No 31
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=52.46 E-value=34 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCCeEEEEEEEeecCCcc--EEEEEcCCCC
Q psy5095 126 NLNHAVVIVGYGMRHQVP--VWIVRNSWGR 153 (192)
Q Consensus 126 ~~~Hav~iVGyg~~~g~~--ywivkNSWG~ 153 (192)
..+||-.|++...-++.+ -..+||-||.
T Consensus 226 v~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 368999999998655555 8999999993
No 32
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=50.69 E-value=18 Score=31.90 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.0
Q ss_pred CCCCCCCCHHHHHHHHHHcCcccCccccccc
Q psy5095 28 NQGCQGGGFNKAIQYLKHAGLEAEADYPFRN 58 (192)
Q Consensus 28 ~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~ 58 (192)
..-.+||.-..+...++++|++..+.||-+.
T Consensus 130 ~~~~DGGqw~m~~~li~KYGvVPk~~~pet~ 160 (437)
T cd00585 130 NPQNDGGQWDMLVNLIEKYGLVPKSVMPESF 160 (437)
T ss_pred CCcCCCCchHHHHHHHHHcCCCcccccCCCc
Confidence 4456899999999999999999999999654
No 33
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=36.65 E-value=56 Score=28.92 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHcCcccCccccccc
Q psy5095 29 QGCQGGGFNKAIQYLKHAGLEAEADYPFRN 58 (192)
Q Consensus 29 ~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~ 58 (192)
.-.+||.-..+...++++|++..+.||-+.
T Consensus 132 ~~~DGGqw~~~~nli~KYGvVPk~~mpet~ 161 (438)
T PF03051_consen 132 PVSDGGQWDMVVNLIKKYGVVPKSVMPETF 161 (438)
T ss_dssp TT-S-B-HHHHHHHHHHH---BGGGSTTGC
T ss_pred CCCCCCchHHHHHHHHHcCcCcHhhCCCCC
Confidence 456799999999999999999999999664
No 34
>PF09028 Mac-1: Mac 1; InterPro: IPR015117 The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymorphonuclear opsonophagocytosis, inhibits the production of reactive oxygen species and contains IgG endopeptidase activity. ; PDB: 1Y08_A 2AVW_C 2AU1_A.
Probab=29.50 E-value=1.4e+02 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=23.3
Q ss_pred hHHHHHHHHhcCCEEEEEeCCcccCCCCceEeCCCCCCCCCCCeEEEEEEEe
Q psy5095 86 SDTFRRMLYHYGPLVAGMNGALLQDYNGKLIRKNDVCPSENLNHAVVIVGYG 137 (192)
Q Consensus 86 ~~~ik~~l~~~gPv~~~~~~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg 137 (192)
.+.|+.+|..++.|..+.. -.+..++|+|++=|..
T Consensus 233 s~~ik~~L~~g~aigLs~~-----------------~~n~~~~HiItlWGae 267 (333)
T PF09028_consen 233 SEKIKEALDNGKAIGLSYS-----------------PGNSSGNHIITLWGAE 267 (333)
T ss_dssp HHHHHHHHHTT-EEEEEE-------------------SSTTS-EEEEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEee-----------------cCCCCCCcEEEEeeeE
Confidence 4678999998777766542 1223479999999988
No 35
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=29.16 E-value=51 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=19.8
Q ss_pred CCCeEEEEEEEeecCC----ccEEEEEcCCCC
Q psy5095 126 NLNHAVVIVGYGMRHQ----VPVWIVRNSWGR 153 (192)
Q Consensus 126 ~~~Hav~iVGyg~~~g----~~ywivkNSWG~ 153 (192)
..+||-.|++....++ .+.-.+||.||.
T Consensus 212 ~~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 212 VPGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp BTTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred ccceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 3789999999985432 556779999994
No 36
>PLN00115 pollen allergen group 3; Provisional
Probab=28.13 E-value=24 Score=25.37 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.2
Q ss_pred CccEEE--EEcCCCCCCC
Q psy5095 141 QVPVWI--VRNSWGRWGP 156 (192)
Q Consensus 141 g~~ywi--vkNSWG~~WG 156 (192)
+..-|+ ++-|||..|-
T Consensus 56 g~~~W~~~M~rswGavW~ 73 (118)
T PLN00115 56 GAKDWVDDLKESSTNTWT 73 (118)
T ss_pred CCCcccCccccCccceeE
Confidence 344698 9999999995
No 37
>PHA02678 hypothetical protein; Provisional
Probab=26.84 E-value=39 Score=22.73 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCCCC-----CcEEEEEeCCCcccccceeeEEEEeeccceEeeCC
Q psy5095 144 VWIVRNSWGRWGPD-----DGYFTVERGTNACGIESYGGICTRTLNGVFLLLNP 192 (192)
Q Consensus 144 ywivkNSWG~~WG~-----~Gy~~i~~~~n~cgi~~~~~~~~~~~~~~~~~~~~ 192 (192)
-.||-++ |+.|-+ +|=+-.-...|.|.-++ .+.....++|++||
T Consensus 7 TlIVy~~-g~~WP~~L~~~~gk~l~fps~nS~tf~~----~I~~d~~svLLVNP 55 (89)
T PHA02678 7 TVIVAVP-GTRFPEGLFDRQGRPLGPGSTPTMEYED----SVPRDARALLLVNP 55 (89)
T ss_pred eEEEeec-CCCCCcceEcCCCCCcCCCCCCceeecc----ccCcccceEEEECC
Confidence 3566655 677753 22222223336676666 44777788999998
No 38
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=24.57 E-value=44 Score=23.84 Aligned_cols=13 Identities=31% Similarity=-0.120 Sum_probs=10.6
Q ss_pred EEEEcCC-CCCCCC
Q psy5095 145 WIVRNSW-GRWGPD 157 (192)
Q Consensus 145 wivkNSW-G~~WG~ 157 (192)
=||+||+ +-.||.
T Consensus 51 ~iV~Ns~~~g~Wg~ 64 (128)
T smart00276 51 KIVCNSKLNGSWGS 64 (128)
T ss_pred EEEEeCccCCccch
Confidence 5899998 668994
No 39
>KOG4621|consensus
Probab=24.19 E-value=2.3e+02 Score=20.79 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=46.2
Q ss_pred ChHHHHHHHHhcCCEEEEEeC-C----ccc--CCCCceEeCCC-C--CCC-CCCCeEEEEEEEeecCCccEEEEEcCCCC
Q psy5095 85 GSDTFRRMLYHYGPLVAGMNG-A----LLQ--DYNGKLIRKND-V--CPS-ENLNHAVVIVGYGMRHQVPVWIVRNSWGR 153 (192)
Q Consensus 85 ~~~~ik~~l~~~gPv~~~~~~-~----~f~--~y~~Giy~~~~-~--~~~-~~~~Hav~iVGyg~~~g~~ywivkNSWG~ 153 (192)
++.+|+..|+++.-|++.+.- + ++- -.+++.+.++. . |.. -..+|-++|-||+. .++-+.++| +
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd~--a~~c~~~nd---P 132 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYDA--ARDCFEIND---P 132 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEecccc--ccCeEEEcC---c
Confidence 789999999966577766643 2 221 12445555421 1 222 24789999999993 345577776 3
Q ss_pred CCCCCcEEEEEe
Q psy5095 154 WGPDDGYFTVER 165 (192)
Q Consensus 154 ~WG~~Gy~~i~~ 165 (192)
...+-|.-+++.
T Consensus 133 A~adpg~c~~Si 144 (167)
T KOG4621|consen 133 ASADPGHCRISI 144 (167)
T ss_pred ccCCCcceeehh
Confidence 444556666654
No 40
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=23.69 E-value=1.3e+02 Score=20.64 Aligned_cols=43 Identities=28% Similarity=0.507 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCccc--cCCCceeEecceEEeC----ChHHHHHHHHhcCCE
Q psy5095 52 ADYPFRNQNGVTGRCAY--DARKVKVRVSDFLVFN----GSDTFRRMLYHYGPL 99 (192)
Q Consensus 52 ~~yPY~~~~~~~~~C~~--~~~~~~~~i~~~~~i~----~~~~ik~~l~~~gPv 99 (192)
-.|||.. ..... -...+.+++..+..=. ..++|.++|.+.||-
T Consensus 31 heyP~rd-----~~~vEDlG~~~r~~~~~a~~~G~dy~~~~~~L~~al~~~G~G 79 (93)
T PF07157_consen 31 HEYPYRD-----GPWVEDLGRKARRIRVTAFFVGDDYEAQRDALIAALEAPGPG 79 (93)
T ss_pred EecCCCC-----CcCeeecCCCCcEEEEEEEEECCcHHHHHHHHHHHHcCCCCe
Confidence 3688876 22222 2345566766654433 567888888887773
No 41
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=20.34 E-value=1.4e+02 Score=21.48 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCCCCcEEE---EEeC--CCcccccceeeEEEEeeccceEeeCC
Q psy5095 154 WGPDDGYFT---VERG--TNACGIESYGGICTRTLNGVFLLLNP 192 (192)
Q Consensus 154 ~WG~~Gy~~---i~~~--~n~cgi~~~~~~~~~~~~~~~~~~~~ 192 (192)
.|-+++|++ |.++ .+.+-+..+-..-.....+.+|+.+|
T Consensus 12 kWS~n~yyY~G~I~~~~~~~kykv~FdDG~~~~v~~~div~~dp 55 (122)
T PF09038_consen 12 KWSDNGYYYPGKITSDKGKNKYKVLFDDGYECRVLGKDIVVCDP 55 (122)
T ss_dssp ESSTTSEEEEEEEEEEETTTEEEEEETTS-EEEEECCCEEEESS
T ss_pred EEccCCcccCceEeecCCCCeEEEEecCCccceeccCcEEEEcc
Confidence 578888865 5443 35566655555443344444444443
No 42
>PF15528 Toxin_48: Putative toxin 48
Probab=20.31 E-value=40 Score=26.20 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=21.6
Q ss_pred EEEEeecCCccEEEEEcCCCCCC----CCCcEEEE
Q psy5095 133 IVGYGMRHQVPVWIVRNSWGRWG----PDDGYFTV 163 (192)
Q Consensus 133 iVGyg~~~g~~ywivkNSWG~~W----G~~Gy~~i 163 (192)
-+||| +..|+.+++||..| +.-||+.-
T Consensus 30 ~~G~g----k~~~~~~~~~~~g~~~~~~~~gy~~~ 60 (189)
T PF15528_consen 30 YFGWG----KSAWEQRKGWGAGFSKRFGQTGYSYS 60 (189)
T ss_pred ccccC----ccchhhhhhhcccccccCCceeEEEE
Confidence 35675 66799999999999 88888744
Done!