Query psy5097
Match_columns 246
No_of_seqs 250 out of 1151
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:13:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2809|consensus 100.0 3.8E-46 8.3E-51 344.4 6.5 204 2-211 1-212 (326)
2 PF01585 G-patch: G-patch doma 99.5 1.2E-14 2.7E-19 99.7 4.4 45 26-70 1-45 (45)
3 smart00443 G_patch glycine ric 99.4 2.8E-13 6.2E-18 93.0 4.3 46 25-70 2-47 (47)
4 KOG2184|consensus 98.6 1.5E-08 3.3E-13 103.4 3.2 52 21-72 110-161 (767)
5 PF12656 G-patch_2: DExH-box s 98.6 2.4E-08 5.2E-13 76.0 3.4 48 25-72 28-75 (77)
6 KOG2384|consensus 98.5 5.9E-08 1.3E-12 85.9 2.4 63 21-84 122-184 (223)
7 KOG0965|consensus 98.5 9E-08 2E-12 97.4 3.9 60 24-85 903-967 (988)
8 KOG2185|consensus 98.3 3.7E-07 8.1E-12 87.9 2.0 44 20-63 290-333 (486)
9 KOG1996|consensus 98.0 4E-06 8.7E-11 78.3 3.6 39 28-66 213-251 (378)
10 KOG3673|consensus 98.0 3.4E-06 7.3E-11 84.3 2.6 47 26-72 82-128 (845)
11 KOG0154|consensus 97.4 5.7E-05 1.2E-09 75.3 2.1 47 24-70 509-555 (573)
12 KOG1994|consensus 97.1 0.00018 3.9E-09 65.2 1.0 49 24-72 78-129 (268)
13 KOG4315|consensus 97.0 0.0005 1.1E-08 66.8 2.9 48 24-72 151-198 (455)
14 KOG4368|consensus 96.4 0.0018 3.9E-08 65.4 2.3 47 24-71 684-734 (757)
15 KOG2138|consensus 94.1 0.027 5.8E-07 58.2 2.0 21 26-46 147-167 (883)
16 KOG1994|consensus 93.0 0.04 8.8E-07 50.3 1.0 48 25-72 36-83 (268)
17 PF15337 Vasculin: Vascular pr 30.8 26 0.00057 28.1 1.2 13 30-42 12-24 (97)
18 PF00446 GnRH: Gonadotropin-re 23.5 38 0.00082 16.7 0.5 7 36-42 4-10 (10)
No 1
>KOG2809|consensus
Probab=100.00 E-value=3.8e-46 Score=344.42 Aligned_cols=204 Identities=38% Similarity=0.623 Sum_probs=180.1
Q ss_pred ccchhhhccccccCCCCCCCCcCCCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCC-CcchhhhH
Q psy5097 2 AMLAETKKKQKWSLNPRGSAWMNDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKEN-DQVWVEVE 80 (246)
Q Consensus 2 ~mLAe~r~Kqk~~~dpr~~~w~~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~-~~~W~~~~ 80 (246)
+|||+||+||+|++||||++|++|++.||++||.+|||.+|.|||++.||++.||+|.+++|+.|||++.. +++||.|+
T Consensus 1 ~~Lae~~~kqk~~~dp~n~~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~ned~W~~h~ 80 (326)
T KOG2809|consen 1 MMLAEPRRKQKIAVDPRNTAWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNNEDQWIAHQ 80 (326)
T ss_pred CCccccccccccccCCccchhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccccccchhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCccccccchhHHhhhhccCCcccceeEECCCCCccchhchhhhcCCCCCCcccccccC
Q psy5097 81 NEFSSLLSKLSSQSDKPISDSPTSVEGVNRSLEEQSKKSKARVHYQKFTRGKDLSRYSKKDLECIFGVSSKSTESKHEEN 160 (246)
Q Consensus 81 d~F~~lL~~Ln~~~~~~~~~~~~~~e~~~~sle~ksK~sk~r~~Y~kFvKGKdLs~~sekDLa~I~G~~~~~~~~~~~~~ 160 (246)
++|+.||+.||+++.+..+.+.........+|++++++++.|+||+.|+++++|+.|+..||++|||++.....
T Consensus 81 d~Fn~lla~Ln~~~~~~~s~~~~~~~~e~~sle~~~k~sr~r~~yk~~~~~K~~~~ys~~~l~gil~k~~~e~~------ 154 (326)
T KOG2809|consen 81 DDFNALLAKLNKQQSQETSDSDDNKKAEKVSLEERSKSSRKRKHYKEFTKSKDLALYSKFDLAGILGKRFEEKT------ 154 (326)
T ss_pred ccHHHHHHHhhhhhccCcchhhhhcccccccceechhhhHHHHHHhhhhccccccchhhhhhhccccccccccc------
Confidence 99999999999999887655544445667899999999999999999999999999999999999999987422
Q ss_pred CCceecccHHHHHHHHHHhccccccCCCCCCCCcch-------hccccccCCCCCccc
Q psy5097 161 ENFVQSGNMSDYFKQKKLNIGSEVEGTNTKPNSEEE-------KSVDNEEQDPNDEEF 211 (246)
Q Consensus 161 ~~ti~sls~~eYF~~km~~lk~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 211 (246)
..|.+.++++|||.++|+.|+++.....+++++..+ ...+.++......++
T Consensus 155 ~~t~~~~~~~D~~~~k~~s~k~k~~~~~~~~~~~~~~~~~kk~~k~~kka~~k~~~sk 212 (326)
T KOG2809|consen 155 TTTEEASEDQDSSVKKMASLKNKERKKSPGSDSSKTQTEAKKGKKSKKKASKKEKKSK 212 (326)
T ss_pred cceeeeccccchhhhHhhhhchhhhcCCCCCccccchhhhhhhhhhhcchhhhhhhhh
Confidence 234556999999999999999999999999888866 334444444444444
No 2
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.52 E-value=1.2e-14 Score=99.73 Aligned_cols=45 Identities=60% Similarity=0.953 Sum_probs=43.1
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeec
Q psy5097 26 SSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFK 70 (246)
Q Consensus 26 ~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~ 70 (246)
+++||++||.+|||++|+|||++.+||++||.+..+.++.|||+.
T Consensus 1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~ 45 (45)
T PF01585_consen 1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE 45 (45)
T ss_pred CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence 478999999999999999999999999999999999999999973
No 3
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.40 E-value=2.8e-13 Score=92.98 Aligned_cols=46 Identities=59% Similarity=0.996 Sum_probs=43.8
Q ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeec
Q psy5097 25 DSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFK 70 (246)
Q Consensus 25 d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~ 70 (246)
++++||++||.+|||++|.|||++.+||++||.+..+.++.|||+.
T Consensus 2 ~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~~ 47 (47)
T smart00443 2 STSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGAE 47 (47)
T ss_pred CcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCCC
Confidence 5689999999999999999999999999999999999999999973
No 4
>KOG2184|consensus
Probab=98.63 E-value=1.5e-08 Score=103.37 Aligned_cols=52 Identities=37% Similarity=0.611 Sum_probs=50.2
Q ss_pred CCcCCCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCC
Q psy5097 21 AWMNDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKEN 72 (246)
Q Consensus 21 ~w~~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~ 72 (246)
.|...+.+||.+||++||+.+|+|||++.|||++||.++++..+.|+|+...
T Consensus 110 ~~e~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~ 161 (767)
T KOG2184|consen 110 DFEKGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGF 161 (767)
T ss_pred hhhhcccchhHHHHHHcCCccccccCccccccccHHhcccCccCcccccccc
Confidence 4999999999999999999999999999999999999999999999999876
No 5
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.63 E-value=2.4e-08 Score=75.98 Aligned_cols=48 Identities=38% Similarity=0.711 Sum_probs=45.0
Q ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCC
Q psy5097 25 DSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKEN 72 (246)
Q Consensus 25 d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~ 72 (246)
+-..||..||.-|||.+|+|+|++..+...|+.+..+..++|||+...
T Consensus 28 PVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~~ 75 (77)
T PF12656_consen 28 PVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKPA 75 (77)
T ss_pred CHHHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCCC
Confidence 457899999999999999999999999999999999999999999763
No 6
>KOG2384|consensus
Probab=98.48 E-value=5.9e-08 Score=85.85 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=55.5
Q ss_pred CCcCCCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCCCcchhhhHHHHH
Q psy5097 21 AWMNDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKENDQVWVEVENEFS 84 (246)
Q Consensus 21 ~w~~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~~~~W~~~~d~F~ 84 (246)
.+.+..++.|+++|.+.||.++.|||.+.+|...||+..++.|+.|||+... ..-+.|..+|+
T Consensus 122 p~~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~-~~rVthfgafd 184 (223)
T KOG2384|consen 122 PHLIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEID-QPRVTHFGAFD 184 (223)
T ss_pred CCcCCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhc-cccccccchhh
Confidence 5567789999999999999999999999999999999999999999999875 44556766675
No 7
>KOG0965|consensus
Probab=98.48 E-value=9e-08 Score=97.40 Aligned_cols=60 Identities=25% Similarity=0.446 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHhcCCCCCCCCCCCCCccccceee-eeeeCCeeeeecCC----CcchhhhHHHHHH
Q psy5097 24 NDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKV-KVKQDGKGLGFKEN----DQVWVEVENEFSS 85 (246)
Q Consensus 24 ~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v-~~K~d~~GLG~~~~----~~~W~~~~d~F~~ 85 (246)
.-..|+|++||+||||++|+|||-.++||.+||.+ ..+.++.|+|.... ...|.-+ +|..
T Consensus 903 Lt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s~pael~peDdeYe--ayrK 967 (988)
T KOG0965|consen 903 LTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGSQPAELQPEDDEYE--AYRK 967 (988)
T ss_pred ccccchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccCCccccCchhhHHH--HHHH
Confidence 35679999999999999999999999999999974 45678899998876 3345433 5653
No 8
>KOG2185|consensus
Probab=98.25 E-value=3.7e-07 Score=87.88 Aligned_cols=44 Identities=43% Similarity=0.748 Sum_probs=40.9
Q ss_pred CCCcCCCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeC
Q psy5097 20 SAWMNDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQD 63 (246)
Q Consensus 20 ~~w~~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d 63 (246)
..|.+++-+||.+||.||||..|.|||..++||+.||.+++-+-
T Consensus 290 akWe~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~ 333 (486)
T KOG2185|consen 290 AKWENHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPA 333 (486)
T ss_pred hhhccccchHHHHHHHHhchhhccccCcCCCccccchhhhhccC
Confidence 47999999999999999999999999999999999999887544
No 9
>KOG1996|consensus
Probab=98.01 E-value=4e-06 Score=78.34 Aligned_cols=39 Identities=31% Similarity=0.660 Sum_probs=36.0
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCee
Q psy5097 28 KFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKG 66 (246)
Q Consensus 28 ~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~G 66 (246)
.++++||++|||++|+|||+++|||+.++.|..-..+.|
T Consensus 213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG 251 (378)
T KOG1996|consen 213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGG 251 (378)
T ss_pred hHHHHHHHHhCcccccCcCccccccccceeeeeccccCc
Confidence 578999999999999999999999999999988777777
No 10
>KOG3673|consensus
Probab=97.98 E-value=3.4e-06 Score=84.25 Aligned_cols=47 Identities=34% Similarity=0.585 Sum_probs=44.8
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCC
Q psy5097 26 SSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKEN 72 (246)
Q Consensus 26 ~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~ 72 (246)
.++.+.+||.+||+..|+|||+.+||+.+||......++.|||....
T Consensus 82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l~ 128 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNLK 128 (845)
T ss_pred cchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccch
Confidence 67899999999999999999999999999999999999999998765
No 11
>KOG0154|consensus
Probab=97.45 E-value=5.7e-05 Score=75.28 Aligned_cols=47 Identities=47% Similarity=0.897 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeec
Q psy5097 24 NDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFK 70 (246)
Q Consensus 24 ~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~ 70 (246)
.+++++|.+||++|||..|.|||...+|++.||+......+.|||..
T Consensus 509 ~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~ 555 (573)
T KOG0154|consen 509 IDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK 555 (573)
T ss_pred CCCCccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence 46889999999999999999999999999999999999999999998
No 12
>KOG1994|consensus
Probab=97.08 E-value=0.00018 Score=65.19 Aligned_cols=49 Identities=24% Similarity=0.284 Sum_probs=45.4
Q ss_pred CCCChHHHHHHHhcCCCCCCCCCCCCCc---cccceeeeeeeCCeeeeecCC
Q psy5097 24 NDSSKFGEKLLRKMGWSDGQGLGVNQQG---IKEHIKVKVKQDGKGLGFKEN 72 (246)
Q Consensus 24 ~d~s~~G~kmL~KmGW~~GkGLGk~~qG---i~epI~v~~K~d~~GLG~~~~ 72 (246)
+..+++|+.+|.+||+++|.-||++..+ +++||.+.++..+.|+|....
T Consensus 78 i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed~ 129 (268)
T KOG1994|consen 78 IRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDEDL 129 (268)
T ss_pred ccccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcccc
Confidence 4468999999999999999999999999 999999999999999998754
No 13
>KOG4315|consensus
Probab=96.97 E-value=0.0005 Score=66.82 Aligned_cols=48 Identities=33% Similarity=0.583 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCC
Q psy5097 24 NDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKEN 72 (246)
Q Consensus 24 ~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~ 72 (246)
++-..||..||.-|||.+|.|+|++.|+ +.+....++..+.|||++..
T Consensus 151 iPVe~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~~ 198 (455)
T KOG4315|consen 151 IPVEGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADPA 198 (455)
T ss_pred CchhHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCcc
Confidence 3557999999999999999999999666 44555778899999999854
No 14
>KOG4368|consensus
Probab=96.40 E-value=0.0018 Score=65.38 Aligned_cols=47 Identities=38% Similarity=0.683 Sum_probs=37.6
Q ss_pred CCCChHHHHHHHhcCCCCCCCCCCCCCccccceee---eeeeC-CeeeeecC
Q psy5097 24 NDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKV---KVKQD-GKGLGFKE 71 (246)
Q Consensus 24 ~d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v---~~K~d-~~GLG~~~ 71 (246)
..+++.|++||.+|||. |.|||..++||.+||.- ..+.. -.|+|+..
T Consensus 684 lse~NKGhQml~KMGWs-G~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l 734 (757)
T KOG4368|consen 684 LGEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL 734 (757)
T ss_pred cccccchhhhHhhcCcc-cCCcccccccccCcccCccccchhhhhcccCccc
Confidence 56899999999999999 88999999999999963 22222 26777765
No 15
>KOG2138|consensus
Probab=94.13 E-value=0.027 Score=58.17 Aligned_cols=21 Identities=57% Similarity=1.219 Sum_probs=20.0
Q ss_pred CChHHHHHHHhcCCCCCCCCC
Q psy5097 26 SSKFGEKLLRKMGWSDGQGLG 46 (246)
Q Consensus 26 ~s~~G~kmL~KmGW~~GkGLG 46 (246)
...+|.+||.+|||++|+|+|
T Consensus 147 s~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 147 SDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhHHHHHHHHhcCccCCCcC
Confidence 578999999999999999999
No 16
>KOG1994|consensus
Probab=93.01 E-value=0.04 Score=50.28 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=44.8
Q ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCccccceeeeeeeCCeeeeecCC
Q psy5097 25 DSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKGLGFKEN 72 (246)
Q Consensus 25 d~s~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K~d~~GLG~~~~ 72 (246)
....|+++||.-|||.+|.-||.++..+.+||++-.+.-+.|||+...
T Consensus 36 ~~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~ 83 (268)
T KOG1994|consen 36 SIMRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKP 83 (268)
T ss_pred hhhhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCc
Confidence 457899999999999999999999999999999999999999999875
No 17
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=30.83 E-value=26 Score=28.06 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=11.2
Q ss_pred HHHHHHhcCCCCC
Q psy5097 30 GEKLLRKMGWSDG 42 (246)
Q Consensus 30 G~kmL~KmGW~~G 42 (246)
-+++|+.|||.+-
T Consensus 12 EhRLLk~MGWqEy 24 (97)
T PF15337_consen 12 EHRLLKAMGWQEY 24 (97)
T ss_pred HHHHHHHhccccc
Confidence 4799999999974
No 18
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=23.46 E-value=38 Score=16.72 Aligned_cols=7 Identities=43% Similarity=1.218 Sum_probs=4.4
Q ss_pred hcCCCCC
Q psy5097 36 KMGWSDG 42 (246)
Q Consensus 36 KmGW~~G 42 (246)
++||.+|
T Consensus 4 S~~w~PG 10 (10)
T PF00446_consen 4 SHGWKPG 10 (10)
T ss_pred ccccCCC
Confidence 3577765
Done!