Query psy5097
Match_columns 246
No_of_seqs 250 out of 1151
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:14:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_h Suppressor protein STM1 19.2 18 0.00062 32.6 -0.7 65 165-241 147-212 (273)
2 2vgp_C Inner centromere protei 15.9 37 0.0013 22.3 0.4 22 139-175 21-42 (43)
3 3zqo_A Terminase small subunit 11.5 57 0.0019 23.4 0.3 21 167-187 1-21 (72)
4 2f3y_B Voltage-dependent L-typ 9.1 1.6E+02 0.0055 17.4 1.6 12 167-178 6-17 (26)
5 1wfw_A Kalirin-9A; SH3 domain, 7.6 41 0.0014 24.7 -1.8 14 34-47 54-67 (74)
6 2be6_D Voltage-dependent L-typ 7.5 2.1E+02 0.007 18.3 1.7 12 167-178 15-26 (37)
7 3dvk_B Voltage-dependent R-typ 7.1 2.4E+02 0.0081 16.3 1.7 12 167-178 10-21 (23)
8 3mj0_A Protein argonaute-2; ar 6.6 1.1E+02 0.0039 23.6 0.2 10 167-176 77-86 (124)
9 4gqb_C Histone H4 peptide; TIM 6.4 1.7E+02 0.0057 17.1 0.8 9 40-48 6-14 (26)
10 1vyn_A Argonaute2; nucleic aci 6.4 1.5E+02 0.005 23.3 0.7 10 167-176 79-88 (143)
No 1
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=19.21 E-value=18 Score=32.56 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=10.9
Q ss_pred ecccHHHHHHHHHHh-ccccccCCCCCCCCcchhccccccCCCCCcccccccchhhHHHHHHhhhcccCCCeeEeeec
Q psy5097 165 QSGNMSDYFKQKKLN-IGSEVEGTNTKPNSEEEKSVDNEEQDPNDEEFIEGGAKKKKKRKKAKKRKCENNDVVELNVT 241 (246)
Q Consensus 165 ~sls~~eYF~~km~~-lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (246)
..+|++||+++.-+. |-... -+.+ .+=..-+...+.+|.|+.+...|.++-| .++. --+|+|+++
T Consensus 147 K~mTL~EYlAeqaek~L~~~~----Eg~d---kkw~~a~~l~KeeE~fi~~t~~K~~rek-~rK~----K~~Leid~~ 212 (273)
T 3u5c_h 147 AQLSXXXXXXXXXXXXXXXXX----XXXX---XXXXXERIETAEKEAYVPATKVKNVKSK-QLKT----KEYLEFDAT 212 (273)
T ss_dssp ----CCCSCHHHHHHHTTSSC----CCCC---CCCCC-----------------------------------------
T ss_pred ceecccccccccccccccccc----cccc---hhhhhhhhhccchhhhccccCccchhhh-hccc----ceEEEecCE
Confidence 359999999876543 21111 1111 1111112223456889977765554322 2222 235666654
No 2
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=15.87 E-value=37 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=13.0
Q ss_pred hhchhhhcCCCCCCcccccccCCCceecccHHHHHHH
Q psy5097 139 KKDLECIFGVSSKSTESKHEENENFVQSGNMSDYFKQ 175 (246)
Q Consensus 139 ekDLa~I~G~~~~~~~~~~~~~~~ti~sls~~eYF~~ 175 (246)
.-|++.|||.- ..+.|+|+|+.
T Consensus 21 p~D~d~iFG~I---------------~pp~LeeiF~~ 42 (43)
T 2vgp_C 21 PIDVDRMYGTI---------------DSPKLEELFNK 42 (43)
T ss_dssp CCCHHHHTTTS---------------CCCCHHHHC--
T ss_pred CCCHHHHcCCC---------------CCcCHHHHhcc
Confidence 34788888743 33667777753
No 3
>3zqo_A Terminase small subunit; DNA-binding protein, molecular motor, DNA packaging; 1.68A {Bacillus phage SF6} PDB: 3zqn_A 3zqm_A
Probab=11.51 E-value=57 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=4.5
Q ss_pred ccHHHHHHHHHHhccccccCC
Q psy5097 167 GNMSDYFKQKKLNIGSEVEGT 187 (246)
Q Consensus 167 ls~~eYF~~km~~lk~~~~~~ 187 (246)
+|+.+|...+|++|....-..
T Consensus 1 ~~ik~YI~erm~ei~~~~Ia~ 21 (72)
T 3zqo_A 1 GSHMARIDARLKEINEKKILQ 21 (72)
T ss_dssp --------------CCCCCCC
T ss_pred CchHHHHHHHHHHHHHhccCC
Confidence 478999999999999876443
No 4
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=9.09 E-value=1.6e+02 Score=17.45 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHH
Q psy5097 167 GNMSDYFKQKKL 178 (246)
Q Consensus 167 ls~~eYF~~km~ 178 (246)
+=|+|||.+...
T Consensus 6 ~LIqdyfRkfkk 17 (26)
T 2f3y_B 6 FLIQEYFRKFKK 17 (26)
T ss_pred hhHHHHHHHHHH
Confidence 558999987654
No 5
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=7.58 E-value=41 Score=24.68 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=11.7
Q ss_pred HHhcCCCCCCCCCC
Q psy5097 34 LRKMGWSDGQGLGV 47 (246)
Q Consensus 34 L~KmGW~~GkGLGk 47 (246)
+..|||.+|.=||-
T Consensus 54 paaegWvPG~vLg~ 67 (74)
T 1wfw_A 54 PAAEGWVPGSILAP 67 (74)
T ss_dssp SSEEEEEEGGGCCB
T ss_pred ccccCcccccEecc
Confidence 45699999999886
No 6
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=7.52 E-value=2.1e+02 Score=18.34 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHH
Q psy5097 167 GNMSDYFKQKKL 178 (246)
Q Consensus 167 ls~~eYF~~km~ 178 (246)
+=|||||.+...
T Consensus 15 fLIQdyFRkfkk 26 (37)
T 2be6_D 15 FLIQEYFRKFKK 26 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 679999976543
No 7
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=7.15 E-value=2.4e+02 Score=16.26 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.0
Q ss_pred ccHHHHHHHHHH
Q psy5097 167 GNMSDYFKQKKL 178 (246)
Q Consensus 167 ls~~eYF~~km~ 178 (246)
|=|+|||.+..+
T Consensus 10 llI~d~~r~~k~ 21 (23)
T 3dvk_B 10 MMIMDYYKQSKV 21 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 568999987654
No 8
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=6.58 E-value=1.1e+02 Score=23.55 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=9.0
Q ss_pred ccHHHHHHHH
Q psy5097 167 GNMSDYFKQK 176 (246)
Q Consensus 167 ls~~eYF~~k 176 (246)
.||.|||+++
T Consensus 77 isV~~Yf~~~ 86 (124)
T 3mj0_A 77 VTIASYFHSR 86 (124)
T ss_dssp EEHHHHHHTT
T ss_pred EEHHHHHHHc
Confidence 7999999875
No 9
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=6.42 E-value=1.7e+02 Score=17.08 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=6.1
Q ss_pred CCCCCCCCC
Q psy5097 40 SDGQGLGVN 48 (246)
Q Consensus 40 ~~GkGLGk~ 48 (246)
+.|+|||+-
T Consensus 6 kggkglgkg 14 (26)
T 4gqb_C 6 KGGKGLGKG 14 (26)
T ss_pred cCCcccCcc
Confidence 347888864
No 10
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=6.39 E-value=1.5e+02 Score=23.26 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=8.9
Q ss_pred ccHHHHHHHH
Q psy5097 167 GNMSDYFKQK 176 (246)
Q Consensus 167 ls~~eYF~~k 176 (246)
.|+.|||+++
T Consensus 79 isv~~Yf~~~ 88 (143)
T 1vyn_A 79 VTIASYFHSR 88 (143)
T ss_dssp EEHHHHHHHT
T ss_pred EEHHHHHHHc
Confidence 6899999985
Done!