Query psy5097
Match_columns 246
No_of_seqs 250 out of 1151
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 17:14:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5097.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5097hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1si2a_ b.34.14.1 (A:) Eukaryo 8.8 45 0.0033 24.0 0.7 11 167-177 81-91 (126)
2 d1l6ja1 a.20.1.2 (A:29-105) Ge 7.2 61 0.0044 21.5 0.7 17 26-42 13-29 (77)
3 d5csma_ a.130.1.2 (A:) Alloste 6.6 22 0.0016 29.7 -2.3 13 82-94 121-133 (256)
4 d1vr5a1 c.94.1.1 (A:23-557) Ol 5.3 2.1E+02 0.015 23.8 3.5 34 28-61 327-360 (535)
5 d1t2sa_ b.34.14.1 (A:) Argonau 5.0 93 0.0068 22.6 0.7 10 167-176 79-88 (123)
6 d1r7aa1 b.71.1.1 (A:435-504) S 4.6 1.2E+02 0.009 19.9 1.1 25 39-66 31-55 (70)
7 d2o8ra1 a.7.15.1 (A:4-112) Pol 4.5 95 0.0069 21.4 0.4 23 163-185 38-60 (109)
8 d2c4ba1 d.1.1.2 (A:3-110) Barn 4.3 1.3E+02 0.0093 21.7 1.0 15 30-44 24-38 (108)
9 d1hska2 d.146.1.1 (A:209-317) 4.0 1.8E+02 0.013 20.3 1.7 36 5-40 15-50 (109)
10 d1smyd_ e.29.1.2 (D:) RNA-poly 3.7 3.5E+02 0.026 27.0 4.1 45 135-179 1027-1076(1504)
No 1
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=45 Score=23.96 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=9.7
Q ss_pred ccHHHHHHHHH
Q psy5097 167 GNMSDYFKQKK 177 (246)
Q Consensus 167 ls~~eYF~~km 177 (246)
.||.|||+++-
T Consensus 81 iTV~~YFk~~Y 91 (126)
T d1si2a_ 81 CTVAQYFKQKY 91 (126)
T ss_dssp EEHHHHHHHTS
T ss_pred EEHHHHHHHHc
Confidence 79999999874
No 2
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.15 E-value=61 Score=21.48 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=12.5
Q ss_pred CChHHHHHHHhcCCCCC
Q psy5097 26 SSKFGEKLLRKMGWSDG 42 (246)
Q Consensus 26 ~s~~G~kmL~KmGW~~G 42 (246)
+-.++..+|.++||-++
T Consensus 13 d~~~a~~yL~~fGYl~~ 29 (77)
T d1l6ja1 13 DRQLAEEYLYRYGYTRV 29 (77)
T ss_dssp HHHHHHHHHHHTTCC--
T ss_pred hHHHHHHHHHHcCCCCC
Confidence 34568999999999865
No 3
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.59 E-value=22 Score=29.69 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHhhhcCC
Q psy5097 82 EFSSLLSKLSSQS 94 (246)
Q Consensus 82 ~F~~lL~~Ln~~~ 94 (246)
-|+.||-.|....
T Consensus 121 Y~~~ilP~i~~~~ 133 (256)
T d5csma_ 121 YIEKIIPLISKRD 133 (256)
T ss_dssp HHHHTHHHHSSSS
T ss_pred HHHHhchHhhcCC
Confidence 5789999997543
No 4
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
Probab=5.29 E-value=2.1e+02 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCCccccceeeeee
Q psy5097 28 KFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVK 61 (246)
Q Consensus 28 ~~G~kmL~KmGW~~GkGLGk~~qGi~epI~v~~K 61 (246)
..+.++|++.||....+-|.....-..|+.+.+-
T Consensus 327 ~kA~~lL~~aG~~~~~~~g~~~~~~g~~l~~~i~ 360 (535)
T d1vr5a1 327 EMAKKILDELGFKDVNKDGFREDPNGKPFKLTIE 360 (535)
T ss_dssp HHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEE
T ss_pred HHHHHHHHHcCccccCCccccccccccccccccc
Confidence 4589999999999766666555555556655553
No 5
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.01 E-value=93 Score=22.62 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=8.2
Q ss_pred ccHHHHHHHH
Q psy5097 167 GNMSDYFKQK 176 (246)
Q Consensus 167 ls~~eYF~~k 176 (246)
.||.+||+++
T Consensus 79 itV~~YF~~~ 88 (123)
T d1t2sa_ 79 VTIASYFHSR 88 (123)
T ss_dssp EEHHHHHHHT
T ss_pred EEHHHHHHHh
Confidence 6899999754
No 6
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=4.63 E-value=1.2e+02 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCccccceeeeeeeCCee
Q psy5097 39 WSDGQGLGVNQQGIKEHIKVKVKQDGKG 66 (246)
Q Consensus 39 W~~GkGLGk~~qGi~epI~v~~K~d~~G 66 (246)
+.+|+|||.++ +.||..-...|..|
T Consensus 31 FeP~~GlGv~N---t~~VA~L~W~D~aG 55 (70)
T d1r7aa1 31 FEPKRGLGVDN---TTPVAMLEWEDSAG 55 (70)
T ss_dssp ECGGGSCSTTC---CSCCEEEEEEETTE
T ss_pred EcCCccccccC---CceeeEEEEeccCC
Confidence 56788888764 44555555555444
No 7
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.54 E-value=95 Score=21.37 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=19.1
Q ss_pred ceecccHHHHHHHHHHhcccccc
Q psy5097 163 FVQSGNMSDYFKQKKLNIGSEVE 185 (246)
Q Consensus 163 ti~sls~~eYF~~km~~lk~~~~ 185 (246)
.|.+-++-|||.-|.|-|++..+
T Consensus 38 ~I~ssNLDEFFmVRVAgLk~~~~ 60 (109)
T d2o8ra1 38 SIFSSNLEEFYTVRVAYHQAVLQ 60 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 47788999999999999886444
No 8
>d2c4ba1 d.1.1.2 (A:3-110) Barnase {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=4.29 E-value=1.3e+02 Score=21.66 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=12.1
Q ss_pred HHHHHHhcCCCCCCC
Q psy5097 30 GEKLLRKMGWSDGQG 44 (246)
Q Consensus 30 G~kmL~KmGW~~GkG 44 (246)
-.+-.+++||.+++|
T Consensus 24 Tk~qA~~~GW~~~kg 38 (108)
T d2c4ba1 24 TKSEAQALGWVASKG 38 (108)
T ss_dssp CHHHHHHTTCCGGGT
T ss_pred cHHHHHHcCCCCCcC
Confidence 356678899999987
No 9
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=4.00 E-value=1.8e+02 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=23.6
Q ss_pred hhhhccccccCCCCCCCCcCCCChHHHHHHHhcCCC
Q psy5097 5 AETKKKQKWSLNPRGSAWMNDSSKFGEKLLRKMGWS 40 (246)
Q Consensus 5 Ae~r~Kqk~~~dpr~~~w~~d~s~~G~kmL~KmGW~ 40 (246)
..++.+|....-.-++.|-++...++-.|++..||+
T Consensus 15 ~~R~~~qP~~~ps~GS~FKNP~~~~A~~LIe~~glk 50 (109)
T d1hska2 15 ERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQ 50 (109)
T ss_dssp HHHHHHSCTTSCEECCCBCCCTTSCHHHHHHHTTCT
T ss_pred HHHhccCCCCCCCceeEEecCCCCchhhhhhhcccc
Confidence 334444443222224567778888899999999997
No 10
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=3.69 E-value=3.5e+02 Score=27.04 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred CccchhchhhhcCCCCCCcccccccC-----CCceecccHHHHHHHHHHh
Q psy5097 135 SRYSKKDLECIFGVSSKSTESKHEEN-----ENFVQSGNMSDYFKQKKLN 179 (246)
Q Consensus 135 s~~sekDLa~I~G~~~~~~~~~~~~~-----~~ti~sls~~eYF~~km~~ 179 (246)
+..|...+.+|.|.......+.-... ....++||.+|||-..|+.
T Consensus 1027 AKGS~~NIsQl~G~rGL~~~PsG~~ie~pI~sSF~eGLtP~EFFFHtMGG 1076 (1504)
T d1smyd_ 1027 ARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGA 1076 (1504)
T ss_dssp SSCCHHHHHHHTTCCCCCBCSSSCBCSSCCCCCSSSCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHhcccccccCCCCcccCCcccccccccCCHHHHHhhcCCC
Done!