RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5097
(246 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 8e-04
Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 55/189 (29%)
Query: 17 PRGSAW---MNDSSKFGEKLLRKMGWSDGQGLGVNQQGI-KEHIKVKVKQDGKGLGFKEN 72
P S + DS + E + M L + + +E ++ V + L
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPM-------LSI--SNLTQEQVQDYVNKTNSHL--PAG 363
Query: 73 DQVWVEVENEFSSLLSKLSSQSDKPISDSPTSVEGVNRSLEEQSKKSKARVHYQKFTRGK 132
QV + + N +L+ +S P S+ G+N +L K+KA G
Sbjct: 364 KQVEISLVNGAKNLV----------VSGPPQSLYGLNLTLR----KAKAP-------SGL 402
Query: 133 DLSR--YSKKDLECI--FG-VSS-------KSTESKHEENENFVQSGNMSDYFKQKKLNI 180
D SR +S++ L+ F V+S ++ + N+S F K + I
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD---LVKNNVS--FNAKDIQI 457
Query: 181 GSEVEGTNT 189
V T
Sbjct: 458 --PVYDTFD 464
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 41/283 (14%), Positives = 76/283 (26%), Gaps = 83/283 (29%)
Query: 12 KWSL-------------NPRGSAWMNDSSKFGEKLLRKMGWS-------DGQGLGVNQQG 51
K + W+N + + + +M + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 52 IKEHIKVKVKQDGKGLGFKEN---------DQVW-VEVENEFSSLLSK-LSSQSDKPISD 100
IK I ++ + + L K V + N F+ L K L + K ++D
Sbjct: 223 IKLRIH-SIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTD 279
Query: 101 SPTSVEGVNRSLEEQSK---KSKARVHYQKF--TRGKDLSRYSKKD---LECIFGVSSKS 152
++ + SL+ S + + K+ R +DL R I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----- 334
Query: 153 TESKHEENENFVQSGNMSDYFKQ---KKLN--IGSEVEGTNTKPNSEEE---------KS 198
ES + D +K KL I S + +P + S
Sbjct: 335 -ESIRDGL-------ATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPS 384
Query: 199 VDNEEQ---------DPNDEEFIEGGAKKKKKRKKAKKRKCEN 232
+D + K K +K+ E+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKES 424
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare
proteins, binding protein, endocytosis-exocytosis
complex; 3.05A {Mus musculus} PDB: 2pjx_A
Length = 592
Score = 29.9 bits (66), Expect = 0.85
Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 21/200 (10%)
Query: 56 IKVKVKQDGKGLGFKENDQVWVEVENE-FSSLLSKLSS-----QSDKPISDSPTSVEGVN 109
K K K +E+D +WV V + + +L ++ S K ++ TS+ +
Sbjct: 269 YKYKTDGKEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISSTKKATEGKTSLSALT 328
Query: 110 RSLEE----QSKKSKARVHYQ-----KFTRGKDLSRYSKKDLECIFGVSSKSTESKHEEN 160
+ +++ + + SK VH ++ + K + + G ++ K
Sbjct: 329 QLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLNIEKLCKTEQDLALGTDAEGQRVKDSML 388
Query: 161 E--NFVQSGNMSDYFKQKKLNIGSEVEGTNTKPNSEEEKSVDNEEQDP----NDEEFIEG 214
+ + N + K + + + T+ N + E D N
Sbjct: 389 VLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENLDRLIHNVKIEDDSDMIRNWSHLGVP 448
Query: 215 GAKKKKKRKKAKKRKCENND 234
++ K +K +
Sbjct: 449 IVPPSQQAKPLRKDRSAEET 468
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.1 bits (65), Expect = 1.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 181 GSEVEGTNTKPNSEEEKSVDNEEQDPNDEEFIEGGAKKKKKRKKAKKRK 229
+ E +++++E+D +DE+ G K+KK KK+K
Sbjct: 58 KESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKK 106
Score = 28.0 bits (62), Expect = 3.6
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 174 KQKKLNIGSEVEGTNTKPNSEEEKSVDNEEQDPNDEEFIEGGAKKKKKRKKAKKRK 229
+++ + S E D E + +++ +G KK+KK KK++
Sbjct: 52 GEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 27.8 bits (61), Expect = 4.5
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 62 QDGKGLGFKENDQVWVEVENE 82
+D LG K+ D ++ N+
Sbjct: 879 KDAAELGIKDGD--MAKLFND 897
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 27.2 bits (59), Expect = 6.3
Identities = 11/76 (14%), Positives = 24/76 (31%)
Query: 159 ENENFVQSGNMSDYFKQKKLNIGSEVEGTNTKPNSEEEKSVDNEEQDPNDEEFIEGGAKK 218
E NF + ++F Q+ NI E E T+ + + ++ +K
Sbjct: 346 EYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRK 405
Query: 219 KKKRKKAKKRKCENND 234
+ + +
Sbjct: 406 VTSELQDADFEIFPLE 421
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical
BUN endocytosis-exocytosis complex; 2.40A {Loligo
pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Length = 591
Score = 26.8 bits (58), Expect = 8.5
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 45 LGVNQQGIKEHIKVKVKQDGKGLGFKENDQVWVEVENE-FSSLLSKLSSQSDKPISDSPT 103
L + K + K + E D +WVE+ ++ + + ++ + + +
Sbjct: 254 LPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRM 313
Query: 104 SVEGVNRSLEEQSKKSKARVHYQKFTRGKDL 134
+++ S+ K YQK
Sbjct: 314 GTAADKAGIKDLSQMLKKMPQYQKELSKYST 344
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing
complex protein TAS3; PIN, rossmann fold, SPOC,
alpha-helical hairpin, heterochrom silencing, RITS,
RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Length = 207
Score = 26.3 bits (57), Expect = 9.8
Identities = 12/64 (18%), Positives = 21/64 (32%)
Query: 7 TKKKQKWSLNPRGSAWMNDSSKFGEKLLRKMGWSDGQGLGVNQQGIKEHIKVKVKQDGKG 66
+K GSAW + + L + + + + HI +KV
Sbjct: 9 FEKGGGSGGGSGGSAWSHPQFEKTGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSE 68
Query: 67 LGFK 70
+ FK
Sbjct: 69 IFFK 72
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
norvegicus} SCOP: a.4.5.14
Length = 109
Score = 25.4 bits (56), Expect = 10.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 205 DPNDEE-FIEGGAKKKKKRKKAKKR 228
DP E+ F G +++KR K +
Sbjct: 80 DPQSEDMFDNGSFLRRRKRFKRLQH 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.123 0.337
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,376,352
Number of extensions: 183013
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 42
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (25.9 bits)