BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5099
(50 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
APDW + S GTTI+AV+FDGGVV+GADSR++T
Sbjct: 23 APDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 56
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
PDW + + S GTTI+AV+FDGGVV+GADSR++T
Sbjct: 24 PDWESREVSTGTTIMAVQFDGGVVLGADSRTTT 56
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 8 VNAYHGGVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
V+A G EA PDW + S GTTI+AV+FDGGVV+GADSR++T
Sbjct: 11 VSAPAFGPEALTPDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 55
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum
GN=psmB6 PE=1 SV=1
Length = 214
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 15 VEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
+EAP+WL GT+I+AVE+DGGV++GADSR++T
Sbjct: 1 MEAPEWLDNAVDLGTSIMAVEYDGGVIMGADSRTTT 36
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2
SV=1
Length = 217
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
P WL+ + GTTIIA+EFDGGVV+G+DSR S
Sbjct: 8 PGWLSEEVKTGTTIIAIEFDGGVVLGSDSRVS 39
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9
PE=2 SV=1
Length = 217
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
P WL+ + GTTIIA+EFDGGVV+G+DSR S
Sbjct: 8 PGWLSEEVKTGTTIIAIEFDGGVVLGSDSRVS 39
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
PDW + S GTTI+AV+F+GGVV+GADSR++T
Sbjct: 23 PDWENREVSTGTTIMAVQFNGGVVLGADSRTTT 55
>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3
SV=1
Length = 217
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
P W++ + GTTIIA+EF+GGVV+G+DSR S
Sbjct: 8 PQWISEEVKTGTTIIAIEFNGGVVLGSDSRVS 39
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1
PE=1 SV=2
Length = 233
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
L A HS GTTII V ++GGVV+GADSR+ST
Sbjct: 5 LDAPHSMGTTIIGVTYNGGVVLGADSRTST 34
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 25 HSCGTTIIAVEFDGGVVIGADSRSST 50
HS GTTII V ++GGVV+GADSR+ST
Sbjct: 10 HSMGTTIIGVTYNGGVVLGADSRTST 35
>sp|O35523|PSB9_MUSPL Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1
SV=1
Length = 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G A + T + GTTI+AVEFDGGVV+G+DSR S
Sbjct: 5 GAPTAGSFRTKEVHTGTTIMAVEFDGGVVVGSDSRVS 41
>sp|P28077|PSB9_RAT Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1
SV=2
Length = 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G A + T + GTTI+AVEFDGGVV+G+DSR S
Sbjct: 5 GAPTAGSFRTGEVHTGTTIMAVEFDGGVVVGSDSRVS 41
>sp|O35522|PSB9_MUSMB Proteasome subunit beta type-9 OS=Mus musculus bactrianus
GN=Psmb9 PE=1 SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G A + T + GTTI+AVEFDGGVV+G+DSR S
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVS 41
>sp|P28076|PSB9_MOUSE Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G A + T + GTTI+AVEFDGGVV+G+DSR S
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVS 41
>sp|O35524|PSB9_MUSSI Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1
SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G A + T + GTTI+AVEFDGGVV+G+DSR S
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVS 41
>sp|O35521|PSB9_MUSDU Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G A + T + GTTI+AVEFDGGVV+G+DSR S
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVS 41
>sp|Q3SZC2|PSB9_BOVIN Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1
Length = 219
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+AVEFDGGVV+G+DSR S
Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVS 41
>sp|P28065|PSB9_HUMAN Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2
Length = 219
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+AVEFDGGVV+G+DSR S
Sbjct: 20 GTTIMAVEFDGGVVMGSDSRVS 41
>sp|A7KE01|PB6LA_SALSA Proteasome subunit beta type-6-A like protein OS=Salmo salar
GN=psmb6l-a PE=3 SV=1
Length = 217
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSS 49
S GTTI+AV F+GGV+IG+DSR+S
Sbjct: 14 STGTTILAVTFNGGVIIGSDSRAS 37
>sp|A7KII6|PB6LB_SALSA Proteasome subunit beta type-6-B like protein OS=Salmo salar
GN=psmb6l-b PE=3 SV=1
Length = 217
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSS 49
S GTTI+AV F+GGV+IG+DSR+S
Sbjct: 14 STGTTILAVTFNGGVIIGSDSRAS 37
>sp|Q8SR11|PSB1_ENCCU Probable proteasome subunit beta type-1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=PRE3 PE=1 SV=1
Length = 203
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSS 49
K GTTIIA+++D GV+IGADSR+S
Sbjct: 6 KEMTGTTIIAIKYDDGVLIGADSRTS 31
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 16 EAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
+A D L KH+ GTT +A F GGV++ ADSR+S
Sbjct: 47 KAKDML--KHAKGTTTLAFIFKGGVMVAADSRAS 78
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSST 50
S GT+I+AV F GV++GADSR++T
Sbjct: 17 SLGTSIMAVTFKDGVILGADSRTTT 41
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSS 49
S GTTI+ V+F+ GVVI AD+RS+
Sbjct: 27 STGTTIVGVKFNNGVVIAADTRST 50
>sp|D1BHT9|PSB_SANKS Proteasome subunit beta OS=Sanguibacter keddieii (strain ATCC
51767 / DSM 10542 / NCFB 3025 / ST-74) GN=prcB PE=3
SV=1
Length = 285
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
GTTI+A FDGGVV+ D R+++
Sbjct: 50 GTTIVAATFDGGVVVAGDRRATS 72
>sp|C9Z4D0|PSB_STRSW Proteasome subunit beta OS=Streptomyces scabies (strain 87.22)
GN=prcB PE=3 SV=1
Length = 281
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G +EAP GTTI+AV F GGVV+ D R++
Sbjct: 45 QGVIEAPH--------GTTIVAVTFPGGVVLAGDRRAT 74
>sp|Q7AKQ5|PSB_STRCO Proteasome subunit beta OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=prcB PE=1 SV=1
Length = 281
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G +EAP GTTI+AV F GGVV+ D R++
Sbjct: 45 QGVIEAPH--------GTTIVAVTFPGGVVLAGDRRAT 74
>sp|D2Q4H4|PSB_KRIFD Proteasome subunit beta OS=Kribbella flavida (strain DSM 17836 /
JCM 10339 / NBRC 14399) GN=prcB PE=3 SV=1
Length = 279
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 17 APDWLTAKHSCGT-----------TIIAVEFDGGVVIGADSRSS 49
APD L + S GT TI+A FDGGVV+ D R++
Sbjct: 29 APDLLPGRRSLGTGDLSKDVPHGTTIVAATFDGGVVMAGDRRAT 72
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Query: 14 GVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G++AP +L GTTI+ + F GV++GAD+R++
Sbjct: 29 GLKAPSFLKT----GTTIVGLIFKDGVILGADTRAT 60
>sp|B1W306|PSB_STRGG Proteasome subunit beta OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=prcB PE=3 SV=1
Length = 281
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G VEAP GTTI++ F GGVV+ D R++
Sbjct: 45 QGAVEAPH--------GTTIVSASFPGGVVLAGDRRAT 74
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Query: 14 GVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G++AP +L GTTI+ + F GV++GAD+R++
Sbjct: 29 GLKAPSFLKT----GTTIVGLIFKDGVILGADTRAT 60
>sp|A1SK13|PSB_NOCSJ Proteasome subunit beta OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=prcB PE=3 SV=1
Length = 283
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 14 GVEAPDWLTAKHSC-----------GTTIIAVEFDGGVVIGADSRSS 49
V+APD L + + GTTI+A F GGVV+ D R++
Sbjct: 23 AVQAPDLLPGRRAVPQGHAGDLAPHGTTIVAATFPGGVVMAGDRRAT 69
>sp|D2S6E2|PSB_GEOOG Proteasome subunit beta OS=Geodermatophilus obscurus (strain ATCC
25078 / DSM 43160 / JCM 3152 / G-20) GN=prcB PE=3 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI++V +DGGV++G D R++
Sbjct: 53 GTTIVSVTYDGGVLMGGDRRAT 74
>sp|Q828I8|PSB2_STRAW Proteasome subunit beta 2 OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=prcB2 PE=3 SV=1
Length = 281
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G +EAP GTTI+A F GGVV+ D R++
Sbjct: 45 QGVIEAPH--------GTTIVATTFPGGVVLAGDRRAT 74
>sp|C6WID8|PSB_ACTMD Proteasome subunit beta OS=Actinosynnema mirum (strain ATCC 29888
/ DSM 43827 / NBRC 14064 / IMRU 3971) GN=prcB PE=3 SV=1
Length = 282
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
P+ + + GTTI+A+ F GGVVI D R++
Sbjct: 45 PEGSVVQAAHGTTIVALTFKGGVVIAGDRRAT 76
>sp|D1A2S9|PSB1_THECD Proteasome subunit beta 1 OS=Thermomonospora curvata (strain ATCC
19995 / DSM 43183 / JCM 3096 / NCIMB 10081) GN=prcB1
PE=3 SV=1
Length = 284
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G VEAP TTI+AV F GGVV+ D R++
Sbjct: 49 GNVEAPH--------ATTIVAVTFPGGVVMAGDRRAT 77
>sp|A4FBY1|PSB_SACEN Proteasome subunit beta OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=prcB PE=3 SV=1
Length = 284
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
G VEAP GTTI+A+ F GGV++ D R++
Sbjct: 49 GAVEAPH--------GTTIVALTFRGGVLLAGDRRAT 77
>sp|A0LU50|PSB_ACIC1 Proteasome subunit beta OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=prcB PE=3 SV=1
Length = 290
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+AV + GGVV+ D R++
Sbjct: 58 GTTIVAVAYQGGVVMAGDRRAT 79
>sp|C7MWV7|PSB_SACVD Proteasome subunit beta OS=Saccharomonospora viridis (strain ATCC
15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
GN=prcB PE=3 SV=1
Length = 289
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
GTTI+A F+GGV+I D R++T
Sbjct: 59 GTTIVASTFNGGVLIAGDRRATT 81
>sp|P99026|PSB4_MOUSE Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1
Length = 264
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 28 GTTIIAVEFDGGVVIGAD 45
GT+++ V+FDGGVVI AD
Sbjct: 53 GTSVLGVKFDGGVVIAAD 70
>sp|Q1B797|PSB_MYCSS Proteasome subunit beta OS=Mycobacterium sp. (strain MCS) GN=prcB
PE=3 SV=1
Length = 304
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+A++F GGVV+ D R++
Sbjct: 65 GTTIVALKFPGGVVMAGDRRAT 86
>sp|A1UHS7|PSB_MYCSK Proteasome subunit beta OS=Mycobacterium sp. (strain KMS) GN=prcB
PE=3 SV=1
Length = 304
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+A++F GGVV+ D R++
Sbjct: 65 GTTIVALKFPGGVVMAGDRRAT 86
>sp|A3Q193|PSB_MYCSJ Proteasome subunit beta OS=Mycobacterium sp. (strain JLS) GN=prcB
PE=3 SV=1
Length = 304
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+A++F GGVV+ D R++
Sbjct: 65 GTTIVALKFPGGVVMAGDRRAT 86
>sp|C7LYP7|PSB_ACIFD Proteasome subunit beta OS=Acidimicrobium ferrooxidans (strain
DSM 10331 / JCM 15462 / NBRC 103882 / ICP) GN=prcB PE=3
SV=1
Length = 273
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
L A+ GTTI A+ F GGVVI D R++
Sbjct: 43 LGAQVPHGTTIAALRFAGGVVIAGDRRAT 71
>sp|Q0RLT7|PSB_FRAAA Proteasome subunit beta OS=Frankia alni (strain ACN14a) GN=prcB
PE=3 SV=2
Length = 274
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
GG+ P + + GTTI+AV F GGV++ D R++
Sbjct: 40 GGLPGP---VTEVAHGTTIVAVTFPGGVIMAGDRRAT 73
>sp|A8LH54|PSB_FRASN Proteasome subunit beta OS=Frankia sp. (strain EAN1pec) GN=prcB
PE=3 SV=1
Length = 274
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+AV F GGV++ D R++
Sbjct: 52 GTTIVAVAFPGGVIMAGDRRAT 73
>sp|Q2J9Q3|PSB_FRASC Proteasome subunit beta OS=Frankia sp. (strain CcI3) GN=prcB PE=3
SV=2
Length = 274
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+AV F GGV++ D R++
Sbjct: 52 GTTIVAVAFPGGVIMAGDRRAT 73
>sp|Q5YUX2|PSB_NOCFA Proteasome subunit beta OS=Nocardia farcinica (strain IFM 10152)
GN=prcB PE=3 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+AV + GGV+I D R++
Sbjct: 57 GTTIVAVSYRGGVLIAGDRRAT 78
>sp|A4TB64|PSB_MYCGI Proteasome subunit beta OS=Mycobacterium gilvum (strain PYR-GCK)
GN=prcB PE=3 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+A++F GGVV+ D R++
Sbjct: 64 GTTIVALKFPGGVVMAGDRRAT 85
>sp|A0QZ47|PSB_MYCS2 Proteasome subunit beta OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=prcB PE=1 SV=2
Length = 303
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GTTI+A+++ GGV+I D RS+
Sbjct: 62 GTTIVALKYPGGVLIAGDRRST 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,570,128
Number of Sequences: 539616
Number of extensions: 571575
Number of successful extensions: 2112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2044
Number of HSP's gapped (non-prelim): 74
length of query: 50
length of database: 191,569,459
effective HSP length: 23
effective length of query: 27
effective length of database: 179,158,291
effective search space: 4837273857
effective search space used: 4837273857
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)