Query psy5099
Match_columns 50
No_of_seqs 119 out of 536
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 17:15:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0173|consensus 99.5 1.1E-14 2.5E-19 101.3 4.5 45 4-50 15-59 (271)
2 KOG0174|consensus 99.0 2.5E-10 5.4E-15 78.0 3.7 31 20-50 11-41 (224)
3 KOG0185|consensus 98.8 5.4E-09 1.2E-13 72.7 3.5 33 18-50 31-63 (256)
4 KOG0175|consensus 98.7 2E-08 4.3E-13 70.7 3.3 28 23-50 66-93 (285)
5 PRK05456 ATP-dependent proteas 98.6 2.4E-08 5.2E-13 64.6 3.0 23 28-50 1-23 (172)
6 PTZ00488 Proteasome subunit be 98.6 3.5E-08 7.6E-13 66.3 3.3 27 23-49 34-60 (247)
7 cd03760 proteasome_beta_type_4 98.5 1.3E-07 2.8E-12 60.4 3.2 23 27-49 1-23 (197)
8 cd03757 proteasome_beta_type_1 98.5 1.5E-07 3.3E-12 61.0 3.4 26 25-50 5-30 (212)
9 COG0638 PRE1 20S proteasome, a 98.4 2.3E-07 4.9E-12 61.8 3.5 26 25-50 27-52 (236)
10 cd03759 proteasome_beta_type_3 98.4 2.3E-07 5E-12 59.2 3.4 23 27-49 2-24 (195)
11 cd03753 proteasome_alpha_type_ 98.4 1.9E-07 4.1E-12 60.2 3.0 27 23-49 22-48 (213)
12 cd01911 proteasome_alpha prote 98.4 2.3E-07 4.9E-12 59.6 2.9 27 23-49 22-48 (209)
13 TIGR03692 ATP_dep_HslV ATP-dep 98.4 2.3E-07 5E-12 60.5 2.8 22 29-50 1-22 (171)
14 TIGR03633 arc_protsome_A prote 98.4 2.7E-07 5.9E-12 59.8 3.0 27 23-49 24-50 (224)
15 PF00227 Proteasome: Proteasom 98.4 1.5E-07 3.3E-12 58.2 1.7 25 25-49 1-25 (190)
16 cd01913 protease_HslV Protease 98.4 2.7E-07 5.8E-12 60.3 2.8 22 29-50 1-22 (171)
17 cd03750 proteasome_alpha_type_ 98.4 3.2E-07 6.8E-12 59.9 2.8 27 23-49 22-48 (227)
18 cd03756 proteasome_alpha_arche 98.3 4.2E-07 9E-12 58.5 2.9 27 23-49 23-49 (211)
19 TIGR03634 arc_protsome_B prote 98.3 6.4E-07 1.4E-11 56.1 3.4 22 28-49 1-22 (185)
20 PRK03996 proteasome subunit al 98.3 5.4E-07 1.2E-11 59.1 2.9 27 23-49 31-57 (241)
21 TIGR03690 20S_bact_beta protea 98.3 8E-07 1.7E-11 58.0 3.4 23 27-49 1-23 (219)
22 cd03752 proteasome_alpha_type_ 98.3 6.6E-07 1.4E-11 57.8 3.0 27 23-49 24-50 (213)
23 cd03755 proteasome_alpha_type_ 98.2 1E-06 2.2E-11 56.7 3.1 27 23-49 22-48 (207)
24 cd03751 proteasome_alpha_type_ 98.2 8.9E-07 1.9E-11 57.7 2.8 27 23-49 25-51 (212)
25 cd03749 proteasome_alpha_type_ 98.2 1.2E-06 2.6E-11 56.8 3.0 27 23-49 22-48 (211)
26 PTZ00246 proteasome subunit al 98.2 1.2E-06 2.7E-11 58.0 3.1 27 24-50 27-53 (253)
27 cd03762 proteasome_beta_type_6 98.2 1.6E-06 3.5E-11 54.6 3.3 22 29-50 1-22 (188)
28 cd03761 proteasome_beta_type_5 98.2 1.9E-06 4.1E-11 54.7 3.3 22 29-50 1-22 (188)
29 cd03763 proteasome_beta_type_7 98.2 2.1E-06 4.4E-11 54.4 3.3 22 29-50 1-22 (189)
30 cd03758 proteasome_beta_type_2 98.1 2.5E-06 5.4E-11 54.5 3.1 21 29-49 2-22 (193)
31 cd01906 proteasome_protease_Hs 98.1 3.2E-06 7E-11 51.9 3.4 21 29-49 1-21 (182)
32 cd01912 proteasome_beta protea 98.1 3.9E-06 8.6E-11 52.3 3.3 21 29-49 1-21 (189)
33 cd03764 proteasome_beta_archea 98.1 4E-06 8.7E-11 52.8 3.3 22 29-50 1-22 (188)
34 cd03754 proteasome_alpha_type_ 98.0 9.7E-06 2.1E-10 52.7 3.5 23 27-49 28-50 (215)
35 TIGR03691 20S_bact_alpha prote 97.7 2.3E-05 5E-10 52.2 2.7 25 23-47 22-46 (228)
36 cd03765 proteasome_beta_bacter 97.5 0.0001 2.3E-09 49.7 3.3 21 29-49 1-21 (236)
37 cd01901 Ntn_hydrolase The Ntn 97.4 0.00018 4E-09 41.7 3.4 21 29-49 1-21 (164)
38 KOG0176|consensus 96.4 0.0031 6.7E-08 43.8 2.7 27 24-50 30-56 (241)
39 KOG0184|consensus 96.1 0.0043 9.4E-08 43.5 2.4 27 23-49 29-55 (254)
40 KOG0178|consensus 92.6 0.11 2.3E-06 36.5 2.5 26 24-49 27-52 (249)
41 KOG0179|consensus 90.7 0.26 5.6E-06 34.4 2.7 25 26-50 27-51 (235)
42 COG5405 HslV ATP-dependent pro 89.9 0.26 5.7E-06 33.2 2.1 23 27-49 3-25 (178)
43 KOG0181|consensus 85.8 0.83 1.8E-05 31.9 2.6 24 24-47 28-51 (233)
44 KOG0177|consensus 81.1 1.4 3.1E-05 30.2 2.2 19 30-48 3-21 (200)
45 KOG0180|consensus 79.6 2.2 4.7E-05 29.3 2.7 23 26-48 6-28 (204)
46 KOG0183|consensus 68.4 4.2 9E-05 28.7 2.0 28 22-49 24-51 (249)
47 PF09894 DUF2121: Uncharacteri 66.1 5.1 0.00011 27.3 2.0 19 30-48 3-21 (194)
48 COG3484 Predicted proteasome-t 57.0 12 0.00027 26.4 2.7 20 30-49 3-22 (255)
49 cd01586 AcnA_IRP Aconitase A c 56.8 9.5 0.00021 28.3 2.2 17 33-50 117-133 (404)
50 PLN00070 aconitate hydratase 31.4 27 0.00059 28.6 1.3 17 33-50 236-252 (936)
51 COG4079 Uncharacterized protei 31.1 39 0.00086 24.4 1.9 20 29-48 2-21 (293)
52 TIGR01341 aconitase_1 aconitat 30.8 28 0.00061 28.3 1.3 17 33-50 184-200 (876)
53 COG1445 FrwB Phosphotransferas 30.2 33 0.00072 21.8 1.3 14 34-47 54-67 (122)
54 KOG3333|consensus 28.7 46 0.00099 22.6 1.8 21 27-47 68-90 (188)
55 PRK14364 Maf-like protein; Pro 26.3 37 0.0008 22.1 1.1 13 35-47 54-66 (181)
56 COG0490 Putative regulatory, l 24.7 70 0.0015 21.2 2.1 20 24-43 109-128 (162)
57 PTZ00092 aconitate hydratase-l 24.3 75 0.0016 26.1 2.6 17 33-50 204-220 (898)
58 PRK00148 Maf-like protein; Rev 21.7 54 0.0012 21.5 1.2 13 35-47 58-70 (194)
59 TIGR02764 spore_ybaN_pdaB poly 21.5 71 0.0015 19.7 1.6 14 27-40 3-16 (191)
60 PF11697 DUF3293: Protein of u 20.9 38 0.00083 18.9 0.3 12 4-15 15-26 (73)
61 COG0424 Maf Nucleotide-binding 20.4 57 0.0012 21.9 1.1 11 37-47 63-73 (193)
No 1
>KOG0173|consensus
Probab=99.52 E-value=1.1e-14 Score=101.34 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=42.4
Q ss_pred hhhhhhhhhcCCCCCCccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 4 ~n~~Rn~~l~~~~~~~~~~~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
+||+||+.|.+++++ .|...+|||||+|+.|+||||||||+|+|.
T Consensus 15 ~nc~rn~~l~~~g~k--~p~~tkTGTtIvgv~~k~gvIlgADtRaT~ 59 (271)
T KOG0173|consen 15 DNCQRNAALLKKGLK--APKATKTGTTIVGVIFKDGVILGADTRATE 59 (271)
T ss_pred hhhhhHHHHHhcCCC--CCcccccCcEEEEEEeCCeEEEeecccccC
Confidence 799999999999888 788899999999999999999999999984
No 2
>KOG0174|consensus
Probab=99.02 E-value=2.5e-10 Score=78.03 Aligned_cols=31 Identities=65% Similarity=0.912 Sum_probs=27.9
Q ss_pred ccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 20 WLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 20 ~~~~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
....+++|||||+|++|+||||||||+|+|+
T Consensus 11 ~~~~evstGTTImAv~y~gGVvlGaDSRTs~ 41 (224)
T KOG0174|consen 11 LPKEEVSTGTTIMAVEYDGGVVLGADSRTST 41 (224)
T ss_pred CcccccccCceEEEEEEcCcEEEeccCCccc
Confidence 3456899999999999999999999999984
No 3
>KOG0185|consensus
Probab=98.78 E-value=5.4e-09 Score=72.72 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 18 ~~~~~~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.....+++.|||||+|++|+||||||||++.|.
T Consensus 31 ~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSY 63 (256)
T KOG0185|consen 31 IQRTLNPIVTGTSVLALKYKDGVVIAADTLGSY 63 (256)
T ss_pred cccccCceeccceEEEEEecCceEEEecccccc
Confidence 445678999999999999999999999999874
No 4
>KOG0175|consensus
Probab=98.66 E-value=2e-08 Score=70.74 Aligned_cols=28 Identities=46% Similarity=0.786 Sum_probs=25.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+..+|||++|++|++|||+|+|+|||+
T Consensus 66 i~~~hGTTTLAF~f~~GvivAvDSRAs~ 93 (285)
T KOG0175|consen 66 IKFAHGTTTLAFKFKGGVIVAVDSRASA 93 (285)
T ss_pred eeecCCceEEEEEecCcEEEEEeccccc
Confidence 3468999999999999999999999985
No 5
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=98.63 E-value=2.4e-08 Score=64.58 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.6
Q ss_pred CccEEEEEeCCeEEEeeeCCCCC
Q psy5099 28 GTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 28 GTTivgi~~~~GVIlaaD~rat~ 50 (50)
|||++||+|+||||||||+|+|.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~ 23 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTL 23 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEe
Confidence 79999999999999999999873
No 6
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=98.61 E-value=3.5e-08 Score=66.26 Aligned_cols=27 Identities=33% Similarity=0.728 Sum_probs=25.0
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
-++++|+|+|||+++||||||+|+|.+
T Consensus 34 ~~~~~G~T~IgIk~kdgVvlAaD~r~~ 60 (247)
T PTZ00488 34 IEFAHGTTTLAFKYGGGIIIAVDSKAT 60 (247)
T ss_pred cccCCCceEEEEEeCCEEEEEEecCcc
Confidence 367899999999999999999999976
No 7
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.48 E-value=1.3e-07 Score=60.36 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=22.0
Q ss_pred cCccEEEEEeCCeEEEeeeCCCC
Q psy5099 27 CGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 27 tGTTivgi~~~~GVIlaaD~rat 49 (50)
||+|+|||+++||||||+|+|.+
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~ 23 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGS 23 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCccc
Confidence 69999999999999999999976
No 8
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.47 E-value=1.5e-07 Score=60.95 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.4
Q ss_pred cccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 25 HSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 25 ~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
+..|+|+|||+|+||||||+|+|.+.
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~ 30 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSE 30 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCcccc
Confidence 35799999999999999999999873
No 9
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.3e-07 Score=61.79 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=23.5
Q ss_pred cccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 25 HSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 25 ~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..+|||+|||+++||||||+|+|+|+
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~ 52 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATS 52 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCC
Confidence 45679999999999999999999874
No 10
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.43 E-value=2.3e-07 Score=59.24 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.8
Q ss_pred cCccEEEEEeCCeEEEeeeCCCC
Q psy5099 27 CGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 27 tGTTivgi~~~~GVIlaaD~rat 49 (50)
.|+|++||+++||||||+|+|.+
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~ 24 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLG 24 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccc
Confidence 69999999999999999999976
No 11
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.43 E-value=1.9e-07 Score=60.18 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.7
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+++|+|+||++|+||||||+|+|.+
T Consensus 22 ~a~~~G~t~igik~~dgVvlaad~r~~ 48 (213)
T cd03753 22 EAIKLGSTAIGIKTKEGVVLAVEKRIT 48 (213)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEecccC
Confidence 356899999999999999999999985
No 12
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=98.40 E-value=2.3e-07 Score=59.56 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+.+|+|+||++|+||||||+|+|.+
T Consensus 22 ~~~~~G~tvigi~~~dgVvlaaD~~~~ 48 (209)
T cd01911 22 EAVKNGSTAVGIKGKDGVVLAVEKKVT 48 (209)
T ss_pred HHHHcCCCEEEEEECCEEEEEEEecCC
Confidence 356899999999999999999999976
No 13
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=98.39 E-value=2.3e-07 Score=60.53 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=20.7
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
|||+||+|+||||||+|+|+|.
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~ 22 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTL 22 (171)
T ss_pred CeEEEEEECCEEEEEECCceEe
Confidence 7999999999999999999873
No 14
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=98.39 E-value=2.7e-07 Score=59.82 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+.+|+|+|||+++||||||+|+|.+
T Consensus 24 ~av~~G~tvigi~~~dgvvlaad~r~~ 50 (224)
T TIGR03633 24 EAVKRGTTAVGIKTKDGVVLAVDKRIT 50 (224)
T ss_pred HHHHcCCCEEEEEECCEEEEEEeccCC
Confidence 357899999999999999999999975
No 15
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=98.38 E-value=1.5e-07 Score=58.18 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.8
Q ss_pred cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 25 HSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 25 ~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
+.+|+|+|||+++||||||+|+|.+
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~ 25 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRIS 25 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEE
T ss_pred CCCCeEEEEEEECCEEEEEEccccc
Confidence 4689999999999999999999865
No 16
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=98.37 E-value=2.7e-07 Score=60.27 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.6
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
|||+||+|+||||||+|+|+|.
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~ 22 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTL 22 (171)
T ss_pred CeEEEEEECCEEEEEECCceEe
Confidence 7999999999999999999873
No 17
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.36 E-value=3.2e-07 Score=59.89 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=24.7
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+++|+|+|||+++||||||+|+|.+
T Consensus 22 ~av~~G~t~igik~~dgVvlaad~~~~ 48 (227)
T cd03750 22 AAVSSGAPSVGIKAANGVVLATEKKVP 48 (227)
T ss_pred HHHHcCCCEEEEEeCCEEEEEEeecCC
Confidence 456899999999999999999999976
No 18
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.33 E-value=4.2e-07 Score=58.52 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+++|+|+||++++||||||+|+|.+
T Consensus 23 ~av~~G~t~igik~~dgvvla~d~~~~ 49 (211)
T cd03756 23 EAVKRGTTALGIKCKEGVVLAVDKRIT 49 (211)
T ss_pred HHHHcCCCEEEEEECCEEEEEEeccCC
Confidence 457899999999999999999999975
No 19
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=98.31 E-value=6.4e-07 Score=56.14 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=21.0
Q ss_pred CccEEEEEeCCeEEEeeeCCCC
Q psy5099 28 GTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 28 GTTivgi~~~~GVIlaaD~rat 49 (50)
|||++||+++||||||+|+|.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~ 22 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRAS 22 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCccc
Confidence 8999999999999999999976
No 20
>PRK03996 proteasome subunit alpha; Provisional
Probab=98.29 E-value=5.4e-07 Score=59.12 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+.+|+|+|||+++||||||+|+|.+
T Consensus 31 ~av~~G~t~igik~~dgVvlaad~r~~ 57 (241)
T PRK03996 31 EAVKRGTTAVGVKTKDGVVLAVDKRIT 57 (241)
T ss_pred HHHHhCCCEEEEEeCCEEEEEEeccCC
Confidence 347899999999999999999999976
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=98.28 E-value=8e-07 Score=57.96 Aligned_cols=23 Identities=43% Similarity=0.863 Sum_probs=21.7
Q ss_pred cCccEEEEEeCCeEEEeeeCCCC
Q psy5099 27 CGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 27 tGTTivgi~~~~GVIlaaD~rat 49 (50)
+|+|+|||+++||||||+|+|.+
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~ 23 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRAT 23 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccc
Confidence 48999999999999999999987
No 22
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.28 E-value=6.6e-07 Score=57.78 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
+.+.+|+|+|||+++||||||+|+|.+
T Consensus 24 ~a~~~G~t~igi~~~dgVvla~d~r~~ 50 (213)
T cd03752 24 EAISHAGTCLGILAKDGIVLAAEKKVT 50 (213)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEEeccC
Confidence 356899999999999999999999976
No 23
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.23 E-value=1e-06 Score=56.69 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.3
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
+.+.+|+|+|||+++||||||+|+|.+
T Consensus 22 ~av~~G~t~Igik~~dgVvlaad~~~~ 48 (207)
T cd03755 22 EAVRKGTTAVGVRGKDCVVLGVEKKSV 48 (207)
T ss_pred HHHHcCCCEEEEEeCCEEEEEEecCCC
Confidence 457899999999999999999999864
No 24
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.23 E-value=8.9e-07 Score=57.74 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.3
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+..|+|+|||+++||||||+|+|.+
T Consensus 25 ~a~~~G~tvIgik~kdgVvla~d~r~~ 51 (212)
T cd03751 25 KAVENSGTAIGIRCKDGVVLAVEKLVT 51 (212)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEEcccc
Confidence 346889999999999999999999976
No 25
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.21 E-value=1.2e-06 Score=56.76 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=24.3
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+..|+|+|||+++||||||+|+|.+
T Consensus 22 ~av~~G~t~IgIk~~dgVvlaad~r~~ 48 (211)
T cd03749 22 EAVKQGSATVGLKSKTHAVLVALKRAT 48 (211)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEeccCc
Confidence 346789999999999999999999975
No 26
>PTZ00246 proteasome subunit alpha; Provisional
Probab=98.20 E-value=1.2e-06 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.4
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+..|+|+|||+++||||||+|+|.+.
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~ 53 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISS 53 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCC
Confidence 467899999999999999999999863
No 27
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.19 E-value=1.6e-06 Score=54.57 Aligned_cols=22 Identities=86% Similarity=1.238 Sum_probs=20.3
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
||++||+|+||||||+|+|.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~ 22 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTST 22 (188)
T ss_pred CeEEEEEECCeEEEEEcccccC
Confidence 6999999999999999999863
No 28
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.17 E-value=1.9e-06 Score=54.73 Aligned_cols=22 Identities=45% Similarity=0.804 Sum_probs=20.4
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
||++||+++||||||+|+|.+.
T Consensus 1 tT~igi~~kdgVvla~d~r~~~ 22 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATA 22 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccC
Confidence 6999999999999999999863
No 29
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.16 E-value=2.1e-06 Score=54.39 Aligned_cols=22 Identities=55% Similarity=0.913 Sum_probs=20.3
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
||++||+++||||||+|+|.+.
T Consensus 1 tt~igi~~~dgvvlaad~r~~~ 22 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATE 22 (189)
T ss_pred CeEEEEEECCeEEEEEcCCccc
Confidence 7999999999999999999763
No 30
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.12 E-value=2.5e-06 Score=54.51 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=20.1
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+||++++||||||+|+|.|
T Consensus 2 ~t~igi~~~dgVvlaad~r~~ 22 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAA 22 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccc
Confidence 799999999999999999986
No 31
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=98.11 E-value=3.2e-06 Score=51.95 Aligned_cols=21 Identities=43% Similarity=0.658 Sum_probs=19.8
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|.+
T Consensus 1 tt~igi~~~dgvvla~d~~~~ 21 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVT 21 (182)
T ss_pred CcEEEEEeCCEEEEEEecccC
Confidence 689999999999999999976
No 32
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.08 E-value=3.9e-06 Score=52.35 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+||++++||||||+|+|.+
T Consensus 1 tt~i~i~~~dgVvla~d~~~~ 21 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRAS 21 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcc
Confidence 699999999999999999976
No 33
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.07 E-value=4e-06 Score=52.78 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.3
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
||++||+|+||||||+|+|.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~ 22 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASM 22 (188)
T ss_pred CcEEEEEeCCEEEEEEcccccc
Confidence 6999999999999999999763
No 34
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.95 E-value=9.7e-06 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=21.7
Q ss_pred cCccEEEEEeCCeEEEeeeCCCC
Q psy5099 27 CGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 27 tGTTivgi~~~~GVIlaaD~rat 49 (50)
.|+|++||+++||||||+|+|.+
T Consensus 28 ~g~t~igi~~~d~Vvlaad~r~~ 50 (215)
T cd03754 28 AGLTSVAVRGKDCAVVVTQKKVP 50 (215)
T ss_pred CCccEEEEEeCCEEEEEEecccc
Confidence 69999999999999999999975
No 35
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=97.74 E-value=2.3e-05 Score=52.18 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=22.4
Q ss_pred cccccCccEEEEEeCCeEEEeeeCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSR 47 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~r 47 (50)
..++.|+|+|||+++||||||+|++
T Consensus 22 kav~~g~T~VGIk~kdgVVLaaek~ 46 (228)
T TIGR03691 22 KGIARGRSVVVLTYADGILFVAENP 46 (228)
T ss_pred HHHHcCCcEEEEEeCCeEEEEEecC
Confidence 3467899999999999999999986
No 36
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.51 E-value=0.0001 Score=49.66 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.0
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
|=+|||+++||||||||+|++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~ 21 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTN 21 (236)
T ss_pred CeEEEEEeCCeEEEEEccCcc
Confidence 457999999999999999976
No 37
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=97.44 E-value=0.00018 Score=41.71 Aligned_cols=21 Identities=48% Similarity=0.676 Sum_probs=19.5
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
+|++|++++||||||+|++.+
T Consensus 1 ~t~i~i~~~~gvila~d~~~~ 21 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLS 21 (164)
T ss_pred CcEEEEEeCCEEEEEEecccC
Confidence 689999999999999999875
No 38
>KOG0176|consensus
Probab=96.39 E-value=0.0031 Score=43.84 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.8
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.++.|+|.+||+.++|||||.+.|.|+
T Consensus 30 AikLGsTaIGv~TkEgVvL~vEKritS 56 (241)
T KOG0176|consen 30 AIKLGSTAIGVKTKEGVVLAVEKRITS 56 (241)
T ss_pred HHhcCCceeeeeccceEEEEEeccccC
Confidence 468999999999999999999999874
No 39
>KOG0184|consensus
Probab=96.13 E-value=0.0043 Score=43.49 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.0
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+-.+.|.|||+++|||||++|...+
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~ 55 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLIT 55 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeec
Confidence 345678999999999999999998654
No 40
>KOG0178|consensus
Probab=92.63 E-value=0.11 Score=36.52 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.3
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
.+++-.|.+|+..+|||||+++.+.+
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t 52 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVT 52 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccc
Confidence 46888899999999999999998865
No 41
>KOG0179|consensus
Probab=90.69 E-value=0.26 Score=34.43 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred ccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 26 SCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 26 ~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..|-|+|||.-.|=.|+|+|+|.|.
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~ 51 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSS 51 (235)
T ss_pred cCCceEEEEcCCceEEEeccccccc
Confidence 4688999999999999999999763
No 42
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=0.26 Score=33.20 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=21.2
Q ss_pred cCccEEEEEeCCeEEEeeeCCCC
Q psy5099 27 CGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 27 tGTTivgi~~~~GVIlaaD~rat 49 (50)
++|||++++-++=|+||+|...|
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVt 25 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVT 25 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEe
Confidence 68999999999999999998765
No 43
>KOG0181|consensus
Probab=85.76 E-value=0.83 Score=31.86 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.5
Q ss_pred ccccCccEEEEEeCCeEEEeeeCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSR 47 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~r 47 (50)
.++.|.+-+|++..||||||++..
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk 51 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKK 51 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccC
Confidence 467899999999999999999874
No 44
>KOG0177|consensus
Probab=81.11 E-value=1.4 Score=30.20 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=17.4
Q ss_pred cEEEEEeCCeEEEeeeCCC
Q psy5099 30 TIIAVEFDGGVVIGADSRS 48 (50)
Q Consensus 30 Tivgi~~~~GVIlaaD~ra 48 (50)
+++||+-+|=||+|+|+-+
T Consensus 3 ~llGIkg~dfvilAsDt~~ 21 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSA 21 (200)
T ss_pred eEEEeecCCEEEEeecchh
Confidence 7899999999999999864
No 45
>KOG0180|consensus
Probab=79.59 E-value=2.2 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred ccCccEEEEEeCCeEEEeeeCCC
Q psy5099 26 SCGTTIIAVEFDGGVVIGADSRS 48 (50)
Q Consensus 26 ~tGTTivgi~~~~GVIlaaD~ra 48 (50)
-.|-+++|++-+++|-||+|.|-
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~Rl 28 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRL 28 (204)
T ss_pred ecCceEEEEeCCceEEEEecccc
Confidence 35889999999999999999984
No 46
>KOG0183|consensus
Probab=68.39 E-value=4.2 Score=28.72 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.0
Q ss_pred ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 22 TAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 22 ~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
+..+..|+|.||+.-++.|+||.+.+..
T Consensus 24 qEAvrkGstaVgvrg~~~vvlgvEkkSv 51 (249)
T KOG0183|consen 24 QEAVRKGSTAVGVRGNNCVVLGVEKKSV 51 (249)
T ss_pred HHHHhcCceEEEeccCceEEEEEeecch
Confidence 3457889999999999999999998753
No 47
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=66.06 E-value=5.1 Score=27.29 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=16.8
Q ss_pred cEEEEEeCCeEEEeeeCCC
Q psy5099 30 TIIAVEFDGGVVIGADSRS 48 (50)
Q Consensus 30 Tivgi~~~~GVIlaaD~ra 48 (50)
=|+|..-++|.|||.|.|.
T Consensus 3 LII~y~GknGaViaGDkR~ 21 (194)
T PF09894_consen 3 LIIAYYGKNGAVIAGDKRN 21 (194)
T ss_pred EEEEEecCCCcEEecccee
Confidence 3789999999999999984
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.01 E-value=12 Score=26.38 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=17.6
Q ss_pred cEEEEEeCCeEEEeeeCCCC
Q psy5099 30 TIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 30 Tivgi~~~~GVIlaaD~rat 49 (50)
=-||++.+.|.|+++|+|+.
T Consensus 3 YCv~l~l~~GlVf~sDsRTN 22 (255)
T COG3484 3 YCVGLILDFGLVFGSDSRTN 22 (255)
T ss_pred eEEEEEeccceEEecccccc
Confidence 35899999999999999974
No 49
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=56.84 E-value=9.5 Score=28.33 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=13.0
Q ss_pred EEEeCCeEEEeeeCCCCC
Q psy5099 33 AVEFDGGVVIGADSRSST 50 (50)
Q Consensus 33 gi~~~~GVIlaaD~rat~ 50 (50)
|+.+. ++|+++||.+++
T Consensus 117 g~~~P-~~ivg~DSHT~t 133 (404)
T cd01586 117 GVAYP-DSVVGTDSHTTM 133 (404)
T ss_pred ceEee-eeEeecCCCCcc
Confidence 45666 699999998763
No 50
>PLN00070 aconitate hydratase
Probab=31.43 E-value=27 Score=28.63 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=12.9
Q ss_pred EEEeCCeEEEeeeCCCCC
Q psy5099 33 AVEFDGGVVIGADSRSST 50 (50)
Q Consensus 33 gi~~~~GVIlaaD~rat~ 50 (50)
|+.|.| .|+|+||.+++
T Consensus 236 G~~~Pd-tlVGtDSHT~~ 252 (936)
T PLN00070 236 GILYPD-SVVGTDSHTTM 252 (936)
T ss_pred CcccCC-eEEeCCcccCC
Confidence 456664 59999998874
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.11 E-value=39 Score=24.40 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.8
Q ss_pred ccEEEEEeCCeEEEeeeCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRS 48 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~ra 48 (50)
|-|++..-++|.+||.|.|.
T Consensus 2 tLviay~gknGaviaGDrR~ 21 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE 21 (293)
T ss_pred eEEEEEecCCCcEEeccceE
Confidence 34788888999999999984
No 52
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=30.78 E-value=28 Score=28.33 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=13.0
Q ss_pred EEEeCCeEEEeeeCCCCC
Q psy5099 33 AVEFDGGVVIGADSRSST 50 (50)
Q Consensus 33 gi~~~~GVIlaaD~rat~ 50 (50)
++.|.| +|+|+||.+++
T Consensus 184 g~a~Pd-tlVGtDSHT~t 200 (876)
T TIGR01341 184 LTAYPD-SLVGTDSHTTM 200 (876)
T ss_pred ceeccc-eeeecCCCCCC
Confidence 356664 89999998874
No 53
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.18 E-value=33 Score=21.85 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=10.9
Q ss_pred EEeCCeEEEeeeCC
Q psy5099 34 VEFDGGVVIGADSR 47 (50)
Q Consensus 34 i~~~~GVIlaaD~r 47 (50)
|.-.|+||||+|..
T Consensus 54 I~~Ad~VI~AaD~~ 67 (122)
T COG1445 54 IAAADVVILAADIE 67 (122)
T ss_pred HHhCCEEEEEeccc
Confidence 34569999999964
No 54
>KOG3333|consensus
Probab=28.69 E-value=46 Score=22.63 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=15.2
Q ss_pred cCccEEE--EEeCCeEEEeeeCC
Q psy5099 27 CGTTIIA--VEFDGGVVIGADSR 47 (50)
Q Consensus 27 tGTTivg--i~~~~GVIlaaD~r 47 (50)
++--+-| ..|+|||||.|-++
T Consensus 68 ~~~hveg~v~H~~~gvvvSAST~ 90 (188)
T KOG3333|consen 68 TQHHVEGLVEHQNGGVVVSASTR 90 (188)
T ss_pred cccceeeeeeEecCCEEEEeccc
Confidence 3434444 67999999998775
No 55
>PRK14364 Maf-like protein; Provisional
Probab=26.28 E-value=37 Score=22.07 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=10.4
Q ss_pred EeCCeEEEeeeCC
Q psy5099 35 EFDGGVVIGADSR 47 (50)
Q Consensus 35 ~~~~GVIlaaD~r 47 (50)
++.+.+||+||+-
T Consensus 54 ~~~~~~vI~aDTv 66 (181)
T PRK14364 54 IFPDSVIIAADTS 66 (181)
T ss_pred hCCCCEEEEeCeE
Confidence 3578899999983
No 56
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=24.72 E-value=70 Score=21.20 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.4
Q ss_pred ccccCccEEEEEeCCeEEEe
Q psy5099 24 KHSCGTTIIAVEFDGGVVIG 43 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIla 43 (50)
...||.|||||.=++=+|+.
T Consensus 109 rq~TGaTIIAI~r~~e~I~S 128 (162)
T COG0490 109 RQNTGATVIAIVRNEEKILS 128 (162)
T ss_pred ccccCcEEEEEEecCcEecC
Confidence 35799999999876666654
No 57
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=24.31 E-value=75 Score=26.11 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=12.7
Q ss_pred EEEeCCeEEEeeeCCCCC
Q psy5099 33 AVEFDGGVVIGADSRSST 50 (50)
Q Consensus 33 gi~~~~GVIlaaD~rat~ 50 (50)
|+.|. +.|+|+||.+++
T Consensus 204 G~~~P-d~lvGtDSHT~~ 220 (898)
T PTZ00092 204 GLLYP-DSVVGTDSHTTM 220 (898)
T ss_pred CcccC-CeEEecCCCCCC
Confidence 35566 569999998874
No 58
>PRK00148 Maf-like protein; Reviewed
Probab=21.72 E-value=54 Score=21.52 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=10.5
Q ss_pred EeCCeEEEeeeCC
Q psy5099 35 EFDGGVVIGADSR 47 (50)
Q Consensus 35 ~~~~GVIlaaD~r 47 (50)
++.+.+||+||+-
T Consensus 58 ~~~~~~vI~aDTv 70 (194)
T PRK00148 58 NAPDAVVLGCDSM 70 (194)
T ss_pred hCCCCEEEEeCcE
Confidence 3678899999983
No 59
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.49 E-value=71 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=11.2
Q ss_pred cCccEEEEEeCCeE
Q psy5099 27 CGTTIIAVEFDGGV 40 (50)
Q Consensus 27 tGTTivgi~~~~GV 40 (50)
+....|+++|+||-
T Consensus 3 ~~~k~V~LTFDDgp 16 (191)
T TIGR02764 3 TSDKKIALTFDISW 16 (191)
T ss_pred CCCCEEEEEEECCC
Confidence 45578999999985
No 60
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=20.94 E-value=38 Score=18.93 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=10.2
Q ss_pred hhhhhhhhhcCC
Q psy5099 4 KDYNVNAYHGGV 15 (50)
Q Consensus 4 ~n~~Rn~~l~~~ 15 (50)
+|+.||+.|...
T Consensus 15 eN~~~~~~L~~~ 26 (73)
T PF11697_consen 15 ENRRRNRQLRAE 26 (73)
T ss_pred HHHHHHHHHHHH
Confidence 799999998755
No 61
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=20.40 E-value=57 Score=21.90 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=9.5
Q ss_pred CCeEEEeeeCC
Q psy5099 37 DGGVVIGADSR 47 (50)
Q Consensus 37 ~~GVIlaaD~r 47 (50)
+|.+||+||+-
T Consensus 63 ~~~~VigaDtv 73 (193)
T COG0424 63 PDALVIGADTV 73 (193)
T ss_pred CCCEEEecCeE
Confidence 59999999973
Done!