Query psy5099
Match_columns 50
No_of_seqs 119 out of 536
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:15:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_H Proteasome component PU 99.5 6.9E-15 2.4E-19 97.7 2.4 44 4-49 7-50 (261)
2 2jay_A Proteasome; hydrolase; 98.8 2.1E-09 7.1E-14 72.4 3.3 47 4-50 26-79 (291)
3 1ryp_H 20S proteasome; multica 98.8 4.1E-09 1.4E-13 66.1 3.0 29 21-49 2-30 (205)
4 1iru_N 20S proteasome; cell cy 98.7 6E-09 2.1E-13 65.9 2.1 28 22-49 2-29 (219)
5 1ryp_N 20S proteasome; multica 98.7 9.8E-09 3.3E-13 65.7 2.8 28 22-49 2-29 (233)
6 1yar_A Proteasome alpha subuni 98.6 1.9E-08 6.6E-13 64.2 3.5 28 23-50 29-56 (233)
7 1ryp_C 20S proteasome; multica 98.6 2.3E-08 7.7E-13 64.2 3.5 28 23-50 26-53 (244)
8 1iru_E 20S proteasome; cell cy 98.6 2.7E-08 9.3E-13 63.9 3.6 27 24-50 30-56 (241)
9 1ryp_E 20S proteasome; multica 98.6 3E-08 1E-12 63.6 3.3 27 24-50 22-48 (242)
10 1j2p_A Alpha-ring, proteasome 98.6 3.1E-08 1E-12 64.0 3.3 27 24-50 30-56 (246)
11 1ryp_F 20S proteasome; multica 98.6 2.8E-08 9.7E-13 63.5 3.1 27 24-50 27-53 (233)
12 2z3b_A ATP-dependent protease 98.6 2.9E-08 9.9E-13 61.8 2.9 24 26-49 3-26 (180)
13 1g0u_M Proteasome component PR 98.6 2.6E-08 8.9E-13 65.4 2.8 29 21-49 34-62 (266)
14 1yar_H Proteasome beta subunit 98.6 2.1E-08 7.3E-13 63.7 2.3 27 23-49 3-29 (217)
15 3nzj_K Proteasome component PR 98.6 2.5E-08 8.4E-13 67.1 2.6 28 22-49 69-96 (287)
16 1ryp_D 20S proteasome; multica 98.6 3.5E-08 1.2E-12 63.4 3.3 27 24-50 24-50 (241)
17 1ryp_B 20S proteasome; multica 98.6 3.4E-08 1.2E-12 63.9 3.2 27 23-49 26-52 (250)
18 1iru_B 20S proteasome; cell cy 98.5 3.5E-08 1.2E-12 63.0 2.9 27 23-49 26-52 (233)
19 1iru_M 20S proteasome; cell cy 98.5 3.3E-08 1.1E-12 62.1 2.7 26 24-49 5-30 (213)
20 1ryp_G 20S proteasome; multica 98.5 3E-08 1E-12 64.2 2.5 28 23-50 25-52 (244)
21 1iru_C 20S proteasome; cell cy 98.5 4E-08 1.4E-12 64.1 3.1 28 23-50 26-53 (261)
22 3h4p_A Proteasome subunit alph 98.5 3E-08 1E-12 65.5 2.4 28 23-50 33-60 (264)
23 1ryp_A 20S proteasome; multica 98.5 5.9E-08 2E-12 62.4 3.4 26 24-49 25-51 (243)
24 1iru_G 20S proteasome; cell cy 98.5 3.5E-08 1.2E-12 64.2 2.3 28 23-50 28-55 (254)
25 1iru_D 20S proteasome; cell cy 98.5 4.7E-08 1.6E-12 63.3 2.7 27 24-50 25-51 (248)
26 1iru_F 20S proteasome; cell cy 98.5 4.9E-08 1.7E-12 64.0 2.8 27 24-50 28-54 (263)
27 1iru_A 20S proteasome; cell cy 98.5 5.6E-08 1.9E-12 62.6 2.9 26 24-49 31-57 (246)
28 1ryp_J 20S proteasome; multica 98.5 5.1E-08 1.8E-12 60.9 2.5 25 25-49 5-29 (204)
29 1iru_J 20S proteasome; cell cy 98.5 5.1E-08 1.8E-12 60.9 2.5 25 25-49 5-29 (205)
30 1ryp_M 20S proteasome; multica 98.5 5.9E-08 2E-12 61.8 2.4 26 24-49 5-30 (222)
31 3nzj_F Proteasome component C1 98.4 7E-08 2.4E-12 64.9 2.0 28 23-50 29-56 (288)
32 1q5r_H Proteasome beta-type su 98.4 9.3E-08 3.2E-12 64.5 2.5 27 23-49 60-86 (294)
33 3mi0_A Proteasome subunit alph 98.3 2.5E-07 8.4E-12 60.9 2.9 27 22-48 21-47 (248)
34 3h4p_a Proteasome subunit beta 98.3 1.7E-07 5.8E-12 59.7 2.0 22 28-49 1-22 (219)
35 1q5q_A Proteasome alpha-type s 98.3 2.6E-07 8.8E-12 60.6 2.5 26 23-48 22-47 (259)
36 1m4y_A ATP-dependent protease 98.3 3.2E-07 1.1E-11 56.2 2.3 21 29-49 1-21 (171)
37 3unf_N Proteasome subunit beta 98.3 2.7E-07 9.4E-12 57.2 2.0 21 29-49 1-21 (199)
38 1g3k_A ATP-dependent protease 98.2 5.3E-07 1.8E-11 55.4 2.6 21 29-49 1-21 (174)
39 1iru_H 20S proteasome; cell cy 98.2 7.8E-07 2.7E-11 55.5 2.3 21 29-49 1-21 (205)
40 1j2q_H Proteasome beta subunit 98.1 8.8E-07 3E-11 55.1 2.4 21 29-49 1-21 (202)
41 3unf_H Proteasome subunit beta 98.1 7.3E-07 2.5E-11 57.9 2.1 21 29-49 1-21 (234)
42 1iru_I 20S proteasome; cell cy 98.1 1E-06 3.5E-11 56.8 2.7 22 29-50 1-22 (234)
43 1iru_L 20S proteasome; cell cy 98.1 9E-07 3.1E-11 55.2 2.3 21 29-49 1-21 (204)
44 1ryp_L 20S proteasome; multica 98.1 9.8E-07 3.3E-11 55.4 2.3 21 29-49 1-21 (212)
45 1iru_K 20S proteasome; cell cy 98.1 1.4E-06 4.7E-11 54.2 2.5 21 29-49 2-22 (201)
46 1ryp_K 20S proteasome; multica 98.1 1.4E-06 4.9E-11 53.9 2.4 21 29-49 2-22 (198)
47 1ryp_I 20S proteasome; multica 98.1 1.3E-06 4.4E-11 55.7 2.3 21 29-49 1-21 (222)
48 1q5q_H Proteasome beta-type su 98.1 1.5E-06 5.2E-11 55.8 2.3 21 29-49 1-21 (235)
49 2oj5_A Viral attachment protei 31.8 19 0.00065 23.1 1.4 23 17-39 94-116 (165)
50 1wj4_A KIAA0794 protein; UBX d 20.8 58 0.002 18.9 2.0 17 26-42 40-56 (124)
No 1
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.49 E-value=6.9e-15 Score=97.73 Aligned_cols=44 Identities=39% Similarity=0.609 Sum_probs=20.3
Q ss_pred hhhhhhhhhcCCCCCCccccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 4 ~n~~Rn~~l~~~~~~~~~~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
+||+||++|.+.+.+ .+..+++|||+|||+|+||||||+|+|++
T Consensus 7 ~~~~rn~~~~~~~~~--~~kav~~GtTivgi~~kdGVVlAaD~r~t 50 (261)
T 3nzj_H 7 DNYQRNNFLAENSHT--QPKATSTGTTIVGVKFNNGVVIAADTRST 50 (261)
T ss_dssp -------------------------CCEEEEEETTEEEEEEECCEE
T ss_pred hhhhhHHHHHhcCCC--CCcccccCceEEEEEECCEEEEEEcCCcc
Confidence 799999999988776 67889999999999999999999999976
No 2
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=98.81 E-value=2.1e-09 Score=72.37 Aligned_cols=47 Identities=30% Similarity=0.366 Sum_probs=18.9
Q ss_pred hhhhhhh--hhcCC---CCCC--ccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 4 KDYNVNA--YHGGV---EAPD--WLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 4 ~n~~Rn~--~l~~~---~~~~--~~~~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.||+||. +|... +... ....++.+|||+|||+|+||||||+|+|+|+
T Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~ya~~v~~GtTiVgi~~kdGVVlAaD~r~t~ 79 (291)
T 2jay_A 26 TDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQ 79 (291)
T ss_dssp --------------------------------CCEEEEEETTEEEEEECCC---
T ss_pred HHHhhhcChhhccccccccCcCccccccccCCcEEEEEEECCEEEEEECCCccC
Confidence 5889998 44432 2210 1133489999999999999999999999873
No 3
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=98.75 E-value=4.1e-09 Score=66.07 Aligned_cols=29 Identities=45% Similarity=0.763 Sum_probs=26.2
Q ss_pred cccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 21 ~~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+++++|||+|||+++||||||+|+|+|
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~ 30 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTT 30 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEE
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcc
Confidence 35678999999999999999999999976
No 4
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=98.68 E-value=6e-09 Score=65.86 Aligned_cols=28 Identities=43% Similarity=0.693 Sum_probs=25.6
Q ss_pred ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 22 TAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 22 ~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
.+++.+|||+|||+++||||||+|+|+|
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~ 29 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGS 29 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEE
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccc
Confidence 4578899999999999999999999976
No 5
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=98.66 E-value=9.8e-09 Score=65.70 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=25.7
Q ss_pred ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 22 TAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 22 ~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
++++++|||+|||+++||||||+|+|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~ 29 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGS 29 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEE
T ss_pred cccccCCceEEEEEECCEEEEEEcCccc
Confidence 4578899999999999999999999976
No 6
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=98.63 E-value=1.9e-08 Score=64.19 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=25.3
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.++++|||+|||+++||||||+|+|+++
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~ 56 (233)
T 1yar_A 29 EAVKKGSTALGMKFANGVLLISDKKVRS 56 (233)
T ss_dssp HHHTTSCCEEEEEETTEEEEEECCCCCC
T ss_pred HHHhcCCcEEEEEECCEEEEEEeccCCc
Confidence 3478999999999999999999999874
No 7
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=98.62 E-value=2.3e-08 Score=64.23 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=25.2
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..+.+|||+|||+++||||||+|+|+++
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~ 53 (244)
T 1ryp_C 26 ESISHAGTAIGIMASDGIVLAAERKVTS 53 (244)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEeeccCC
Confidence 3478999999999999999999999874
No 8
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=98.60 E-value=2.7e-08 Score=63.89 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=24.7
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
++.+|||+|||+++||||||+|+|+++
T Consensus 30 av~~Gtt~vgi~~~dgVvlaaD~r~~~ 56 (241)
T 1iru_E 30 AIKLGSTAIGIQTSEGVCLAVEKRITS 56 (241)
T ss_dssp HHTTSCCEEEEEETTEEEEEEECCCCC
T ss_pred HHHcCCcEEEEEcCCEEEEEEecccCC
Confidence 478899999999999999999999874
No 9
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=98.58 E-value=3e-08 Score=63.62 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=24.8
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+.+|||+|||+++||||||+|+|+++
T Consensus 22 av~~Gtt~vgi~~~dgVvlaaD~r~~~ 48 (242)
T 1ryp_E 22 AIKLGSTAIGIATKEGVVLGVEKRATS 48 (242)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSS
T ss_pred HHHcCCCEEEEEECCEEEEEEeecCCC
Confidence 478999999999999999999999874
No 10
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=98.58 E-value=3.1e-08 Score=63.95 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.8
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
++.+|||+|||+++||||||+|+|++.
T Consensus 30 av~~Gtt~vgi~~~dgVvlaaD~r~~~ 56 (246)
T 1j2p_A 30 AVKRGATAIGIKCKEGVILIADKRVGS 56 (246)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECCCSC
T ss_pred HHHcCCcEEEEEECCEEEEEEeccCCc
Confidence 478999999999999999999999873
No 11
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=98.58 E-value=2.8e-08 Score=63.54 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=24.6
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+++|||+|||+++||||||+|+|+++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~ 53 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNAD 53 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSS
T ss_pred HHHcCCCEEEEEcCCEEEEEEEecccc
Confidence 367899999999999999999999874
No 12
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=98.57 E-value=2.9e-08 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.6
Q ss_pred ccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 26 SCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 26 ~tGTTivgi~~~~GVIlaaD~rat 49 (50)
.+|||++||+++||||||+|+|+|
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t 26 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVT 26 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEE
T ss_pred CCCeEEEEEEECCEEEEEECCCcc
Confidence 579999999999999999999976
No 13
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=98.57 E-value=2.6e-08 Score=65.45 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=26.2
Q ss_pred cccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 21 ~~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
...++++|||+|||+++||||||+|+|+|
T Consensus 34 ~~~av~~GtT~vgi~~~dgVVlAaD~r~t 62 (266)
T 1g0u_M 34 TQQPIVTGTSVISMKYDNGVIIAADNLGS 62 (266)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEE
T ss_pred hccCcccCceEEEEEECCEEEEEEcCCcc
Confidence 34678899999999999999999999976
No 14
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=98.57 E-value=2.1e-08 Score=63.69 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=20.3
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+.+|||+|||+++||||||+|+|++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~ 29 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVT 29 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEE
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCC
Confidence 367889999999999999999999976
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=98.56 E-value=2.5e-08 Score=67.11 Aligned_cols=28 Identities=39% Similarity=0.738 Sum_probs=20.4
Q ss_pred ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 22 TAKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 22 ~~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..++.+|||+|||+|+||||||+|+|+|
T Consensus 69 ~~~v~~GtT~vgik~~dGVVlAaD~r~t 96 (287)
T 3nzj_K 69 KIKIAHGTTTLAFRFQGGIIVAVDSRAT 96 (287)
T ss_dssp -------CCEEEEEETTEEEEEECCCEE
T ss_pred hhheccCceEEEEEECCEEEEEEccccc
Confidence 4578999999999999999999999986
No 16
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=98.56 E-value=3.5e-08 Score=63.36 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.7
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+++|||+|||+++||||||+|+|+++
T Consensus 24 av~~Gtt~vgi~~~dgVvlaaD~r~~~ 50 (241)
T 1ryp_D 24 AVKRGTCAVGVKGKNCVVLGCERRSTL 50 (241)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSS
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccCc
Confidence 468899999999999999999999863
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=98.56 E-value=3.4e-08 Score=63.86 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
+.+++|||+|||+++||||||+|+|++
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~ 52 (250)
T 1ryp_B 26 TAVKQGVTSLGIKATNGVVIATEKKSS 52 (250)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEECCCS
T ss_pred HHHHcCCcEEEEEECCEEEEEEeccCC
Confidence 346899999999999999999999986
No 18
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=98.55 E-value=3.5e-08 Score=63.00 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=24.6
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
.++++|||+|||+++||||||+|+|++
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~ 52 (233)
T 1iru_B 26 AAVAGGAPSVGIKAANGVVLATEKKQK 52 (233)
T ss_dssp HHHHTSCCEEEEECSSCEEEEEECCCC
T ss_pred HHHHcCCcEEEEEeCCEEEEEEEecCC
Confidence 346899999999999999999999986
No 19
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=98.55 E-value=3.3e-08 Score=62.09 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.7
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
.+.+|||+|||+++||||||+|+|++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~ 30 (213)
T 1iru_M 5 YVFNGGTILAIAGEDFAIVASDTRLS 30 (213)
T ss_dssp CCCCCCEEEEEEETTEEEEEEECCEE
T ss_pred ccCCCCcEEEEEeCCEEEEEECCCcc
Confidence 35689999999999999999999975
No 20
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=98.54 E-value=3e-08 Score=64.17 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.3
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.++.+|||+|||+++||||||+|+|+++
T Consensus 25 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~ 52 (244)
T 1ryp_G 25 KAVENGTTSIGIKCNDGVVFAVEKLITS 52 (244)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEECCC
T ss_pred HHHHCCCCEEEEEECCEEEEEEecccCC
Confidence 4578999999999999999999999874
No 21
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=98.54 E-value=4e-08 Score=64.13 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.2
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..+.+|||+|||+++||||||+|+|+++
T Consensus 26 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~ 53 (261)
T 1iru_C 26 EAIGHAGTCLGILANDGVLLAAERRNIH 53 (261)
T ss_dssp HHHTTSCCEEEEBCSSEEEEEECCCCCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecccCC
Confidence 3478999999999999999999999873
No 22
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=3e-08 Score=65.47 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=25.2
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..+++|||+|||+|+||||||+|+|+++
T Consensus 33 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~ 60 (264)
T 3h4p_A 33 EAVRRGTTAIGIACKDGVVLAVDRRITS 60 (264)
T ss_dssp HHHHHSCCEEEECCSSEEEEEEECCCCS
T ss_pred HHHhcCCcEEEEEECCEEEEEEecCccC
Confidence 3468999999999999999999999873
No 23
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=98.52 E-value=5.9e-08 Score=62.37 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=24.1
Q ss_pred cccc-CccEEEEEeCCeEEEeeeCCCC
Q psy5099 24 KHSC-GTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 24 ~~~t-GTTivgi~~~~GVIlaaD~rat 49 (50)
.+++ |||+|||+++||||||+|+|++
T Consensus 25 av~~~Gtt~vgi~~~dgVvlaad~r~~ 51 (243)
T 1ryp_A 25 ATNQTNINSLAVRGKDCTVVISQKKVP 51 (243)
T ss_dssp HTTTTCCCEEEEECSSEEEEEEECCCC
T ss_pred HHhcCCCcEEEEEeCCEEEEEEEecCC
Confidence 4678 9999999999999999999986
No 24
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=98.52 E-value=3.5e-08 Score=64.19 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.2
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..+++|||+|||+++||||||+|+|+++
T Consensus 28 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~ 55 (254)
T 1iru_G 28 KAVENSSTAIGIRCKDGVVFGVEKLVLS 55 (254)
T ss_dssp HHHHTSCCEEEEECSSBEEEEEEEECSC
T ss_pred HHHhcCCCEEEEEECCEEEEEEecccCC
Confidence 3478999999999999999999999873
No 25
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=98.51 E-value=4.7e-08 Score=63.30 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.8
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+++|||+|||+++||||||+|+|+++
T Consensus 25 av~~Gtt~vgi~~~dgVvlaaD~r~~~ 51 (248)
T 1iru_D 25 AVKKGSTAVGVRGRDIVVLGVEKKSVA 51 (248)
T ss_dssp HHHTSCCEEEECCSSEEEEEECCCCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecccc
Confidence 478999999999999999999999874
No 26
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=98.50 E-value=4.9e-08 Score=64.03 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=24.6
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
.+++|||+|||+++||||||+|+|+++
T Consensus 28 av~~Gtt~vgi~~~dgVVlaaD~r~~~ 54 (263)
T 1iru_F 28 AVKQGSATVGLKSKTHAVLVALKRAQS 54 (263)
T ss_dssp HHHHSCCEEEEECSSEEEEEEECCCSS
T ss_pred HHHcCCcEEEEEeCCEEEEEEeccccc
Confidence 367899999999999999999999873
No 27
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=98.50 E-value=5.6e-08 Score=62.57 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=24.0
Q ss_pred cccc-CccEEEEEeCCeEEEeeeCCCC
Q psy5099 24 KHSC-GTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 24 ~~~t-GTTivgi~~~~GVIlaaD~rat 49 (50)
++++ |||+|||+++||||||+|+|++
T Consensus 31 av~~~Gtt~vgi~~~dgVvlaaD~r~~ 57 (246)
T 1iru_A 31 AINQGGLTSVAVRGKDCAVIVTQKKVP 57 (246)
T ss_dssp HHHTTCCEEEEEECSSEEEEEEECCCC
T ss_pred HHhcCCCCEEEEEeCCEEEEEEeecCC
Confidence 4677 9999999999999999999986
No 28
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=98.49 E-value=5.1e-08 Score=60.86 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=23.1
Q ss_pred cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 25 HSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 25 ~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+|||+|||+++||||||+|+|++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~ 29 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLG 29 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEE
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcc
Confidence 4689999999999999999999975
No 29
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=98.49 E-value=5.1e-08 Score=60.90 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=23.1
Q ss_pred cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 25 HSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 25 ~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+|||+|||+++||||||+|+|++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~ 29 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFG 29 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEE
T ss_pred cCCCCeEEEEEeCCEEEEEECCccc
Confidence 4689999999999999999999975
No 30
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=98.47 E-value=5.9e-08 Score=61.80 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.8
Q ss_pred ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 24 KHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 24 ~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
.+.+|||+|||+++||||||+|+|.|
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~ 30 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNI 30 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEE
T ss_pred cccCCccEEEEEeCCEEEEEEecccc
Confidence 45689999999999999999999975
No 31
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=98.42 E-value=7e-08 Score=64.93 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.2
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat~ 50 (50)
..+++|||+|||+|+||||||+|+|+++
T Consensus 29 kAv~~GtT~Vgik~kdGVVlAaD~r~t~ 56 (288)
T 3nzj_F 29 KAVENGTTSIGIKCNDGVVFAVEKLITS 56 (288)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEEECC
T ss_pred HHHhcCCcEEEEEECCEEEEEEcCCccc
Confidence 3578999999999999999999999763
No 32
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=98.42 E-value=9.3e-08 Score=64.47 Aligned_cols=27 Identities=37% Similarity=0.720 Sum_probs=24.7
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~rat 49 (50)
..+.+|||+|||+|+||||||+|+|++
T Consensus 60 ~Av~~GtTiVgIk~kdGVVlAaD~r~t 86 (294)
T 1q5r_H 60 DLAPHGTTIVALTYKGGVLLAGDRRAT 86 (294)
T ss_dssp CCSCBCCCEEEEECSSCEEEEECCCEE
T ss_pred HHHhcCceEEEEEECCEEEEEEcCccc
Confidence 347899999999999999999999976
No 33
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=98.33 E-value=2.5e-07 Score=60.93 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=24.2
Q ss_pred ccccccCccEEEEEeCCeEEEeeeCCC
Q psy5099 22 TAKHSCGTTIIAVEFDGGVVIGADSRS 48 (50)
Q Consensus 22 ~~~~~tGTTivgi~~~~GVIlaaD~ra 48 (50)
...+++|||+|||+|+||||||+|+|.
T Consensus 21 ~~av~~GtT~vgi~~kdgVVlaadkr~ 47 (248)
T 3mi0_A 21 RKGIARAKSVVALAYAGGVLFVAENPS 47 (248)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCC
T ss_pred HHHHhCCCcEEEEEeCCEEEEEEeCCC
Confidence 345789999999999999999999984
No 34
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=98.33 E-value=1.7e-07 Score=59.70 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.2
Q ss_pred CccEEEEEeCCeEEEeeeCCCC
Q psy5099 28 GTTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 28 GTTivgi~~~~GVIlaaD~rat 49 (50)
|||+|||+++||||||+|+|++
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~ 22 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRAS 22 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEE
T ss_pred CccEEEEEECCEEEEEEcCCcc
Confidence 8999999999999999999976
No 35
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=98.31 E-value=2.6e-07 Score=60.60 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.7
Q ss_pred cccccCccEEEEEeCCeEEEeeeCCC
Q psy5099 23 AKHSCGTTIIAVEFDGGVVIGADSRS 48 (50)
Q Consensus 23 ~~~~tGTTivgi~~~~GVIlaaD~ra 48 (50)
..+++|||+|||+|+||||||+|+|.
T Consensus 22 ~av~~Gtt~vgi~~~dgVVlaaD~rs 47 (259)
T 1q5q_A 22 KGIARGRSVVVLTFRDGVLFVAENPS 47 (259)
T ss_dssp HHHHTSCCEEEEECSSEEEEEECCSC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecCC
Confidence 46789999999999999999999983
No 36
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=98.28 E-value=3.2e-07 Score=56.17 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=20.0
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~ 21 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVT 21 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEE
T ss_pred CeEEEEEECCEEEEEECCCcc
Confidence 799999999999999999976
No 37
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=98.27 E-value=2.7e-07 Score=57.21 Aligned_cols=21 Identities=81% Similarity=1.208 Sum_probs=20.0
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~ 21 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVS 21 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEE
T ss_pred CeEEEEEeCCeEEEEECCccc
Confidence 799999999999999999976
No 38
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=98.23 E-value=5.3e-07 Score=55.41 Aligned_cols=21 Identities=48% Similarity=0.737 Sum_probs=20.0
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|+|
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t 21 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVS 21 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEE
T ss_pred CeEEEEEECCEEEEEECCCCc
Confidence 799999999999999999976
No 39
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=98.16 E-value=7.8e-07 Score=55.50 Aligned_cols=21 Identities=76% Similarity=1.222 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~ 21 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTT 21 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEE
T ss_pred CcEEEEEeCCEEEEEEcCCcc
Confidence 799999999999999999976
No 40
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=98.15 E-value=8.8e-07 Score=55.14 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~ 21 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRAT 21 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEE
T ss_pred CcEEEEEeCCEEEEEECCCcC
Confidence 799999999999999999976
No 41
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=98.15 E-value=7.3e-07 Score=57.94 Aligned_cols=21 Identities=48% Similarity=0.854 Sum_probs=20.0
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+|+||||||+|+|++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t 21 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRAT 21 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEE
T ss_pred CeEEEEEeCCEEEEEECCCcc
Confidence 799999999999999999975
No 42
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=98.15 E-value=1e-06 Score=56.75 Aligned_cols=22 Identities=45% Similarity=0.821 Sum_probs=20.3
Q ss_pred ccEEEEEeCCeEEEeeeCCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSST 50 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat~ 50 (50)
||+|||+|+||||||+|+|+++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~ 22 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATE 22 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEES
T ss_pred CeEEEEEeCCEEEEEEcCCccc
Confidence 7999999999999999999763
No 43
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=98.14 E-value=9e-07 Score=55.17 Aligned_cols=21 Identities=48% Similarity=0.786 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~ 21 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRAT 21 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEE
T ss_pred CeEEEEEeCCEEEEEEcCCcc
Confidence 799999999999999999976
No 44
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=98.13 E-value=9.8e-07 Score=55.42 Aligned_cols=21 Identities=43% Similarity=0.877 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~ 21 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRAT 21 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEE
T ss_pred CcEEEEEeCCEEEEEEcCCcc
Confidence 799999999999999999976
No 45
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=98.10 E-value=1.4e-06 Score=54.23 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~ 22 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAA 22 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEE
T ss_pred ceEEEEEeCCEEEEEEcCccc
Confidence 799999999999999999976
No 46
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=98.09 E-value=1.4e-06 Score=53.92 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=19.8
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|.+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~ 22 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVT 22 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEE
T ss_pred ceEEEEEECCEEEEEECCCcc
Confidence 799999999999999999975
No 47
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=98.09 E-value=1.3e-06 Score=55.69 Aligned_cols=21 Identities=62% Similarity=0.979 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t 21 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRST 21 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEE
T ss_pred CeEEEEEECCEEEEEEcCCcc
Confidence 799999999999999999975
No 48
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=98.07 E-value=1.5e-06 Score=55.75 Aligned_cols=21 Identities=43% Similarity=0.885 Sum_probs=19.9
Q ss_pred ccEEEEEeCCeEEEeeeCCCC
Q psy5099 29 TTIIAVEFDGGVVIGADSRSS 49 (50)
Q Consensus 29 TTivgi~~~~GVIlaaD~rat 49 (50)
||+|||+++||||||+|+|++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~ 21 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRAT 21 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEE
T ss_pred CeEEEEEECCEEEEEECCCCC
Confidence 799999999999999999976
No 49
>2oj5_A Viral attachment protein sigma 1; beta-barrel, beta-spiral repeat, aspartic acid cluster, GREE motif, trimer, viral protein; 1.75A {Reovirus SP} PDB: 3eoy_A 2oj6_A
Probab=31.82 E-value=19 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=18.3
Q ss_pred CCCccccccccCccEEEEEeCCe
Q psy5099 17 APDWLTAKHSCGTTIIAVEFDGG 39 (50)
Q Consensus 17 ~~~~~~~~~~tGTTivgi~~~~G 39 (50)
+|.+...++++|.|.+||.|-+|
T Consensus 94 ePs~ttDp~st~~tf~Aiq~~~g 116 (165)
T 2oj5_A 94 EPAFHNDVVTYGAQTVAIGLSSG 116 (165)
T ss_dssp CBTTTTCCCCEEEEEEEEEEESS
T ss_pred CCccccCcccccceEEEEEeecC
Confidence 35556678899999999999766
No 50
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=20.76 E-value=58 Score=18.92 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=13.1
Q ss_pred ccCccEEEEEeCCeEEE
Q psy5099 26 SCGTTIIAVEFDGGVVI 42 (50)
Q Consensus 26 ~tGTTivgi~~~~GVIl 42 (50)
...++.|.|++.||-.|
T Consensus 40 ~~~~t~IqIRlPdG~rl 56 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKRE 56 (124)
T ss_dssp SSCEEEEEEECTTSCEE
T ss_pred CCCcEEEEEECCCCCEE
Confidence 45678999999999533
Done!