RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5099
         (50 letters)



>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
          3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
          1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
          3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
          Length = 205

 Score = 47.6 bits (114), Expect = 6e-09
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50
           + S G +I+AV F  GV++GADSR++T
Sbjct: 4  GEVSLGASIMAVTFKDGVILGADSRTTT 31


>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
          N-terminal nucleophilic HYDR 19S regulatory particle;
          HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
          3nzw_K* 3nzx_K*
          Length = 287

 Score = 47.8 bits (114), Expect = 7e-09
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          H           K + GTT +A  F GG+++  DSR++ 
Sbjct: 59 HTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATA 97


>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
          N-terminal nucleophilic HYDR 19S regulatory particle;
          HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
          3nzw_H* 3nzx_H*
          Length = 261

 Score = 46.2 bits (110), Expect = 2e-08
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 26 SCGTTIIAVEFDGGVVIGADSRSST 50
          S GTTI+ V+F+ GVVI AD+RS+ 
Sbjct: 27 STGTTIVGVKFNNGVVIAADTRSTQ 51


>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome
          activator 11S, hydrolase-HYD activator complex; 1.90A
          {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
          1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
          Length = 217

 Score = 44.9 bits (107), Expect = 6e-08
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GTT + +     V++  + R + 
Sbjct: 8  GTTTVGITLKDAVIMATERRVTM 30


>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
          Length = 205

 Score = 44.8 bits (107), Expect = 7e-08
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50
              G  ++A++    V I AD R   
Sbjct: 4  MSYNGGAVMAMKGKNCVAIAADRRFGI 30


>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
          Length = 219

 Score = 44.5 bits (106), Expect = 8e-08
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GT+++ V+F+GGVVI AD   S 
Sbjct: 8  GTSVLGVKFEGGVVIAADMLGSY 30


>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
          1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
          2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
          3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
          Length = 222

 Score = 44.3 bits (105), Expect = 1e-07
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G TI+ +  +   V+  D+R+ T
Sbjct: 9  GGTILGIAGEDFAVLAGDTRNIT 31


>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_N* 3une_N
          Length = 205

 Score = 44.1 bits (105), Expect = 1e-07
 Identities = 17/22 (77%), Positives = 22/22 (100%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+AV+FDGGVV+GADSR++T
Sbjct: 1  TTIMAVQFDGGVVLGADSRTTT 22


>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
          3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
          3h6i_C 3h6f_C 3hf9_H 3mfe_H
          Length = 291

 Score = 44.1 bits (104), Expect = 1e-07
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 10 AYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          A   G        A+   GTTI+A+++ GGVV+  D RS+ 
Sbjct: 39 ASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQ 79


>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
          1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
          2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
          3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
          Length = 233

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GT++I++++D GV+I AD+  S 
Sbjct: 8  GTSVISMKYDNGVIIAADNLGSY 30


>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
          Length = 213

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G TI+A+  +   ++ +D+R S 
Sbjct: 9  GGTILAIAGEDFAIVASDTRLSE 31


>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
          development, protein degradation, hydrolase-hydrolase
          inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
          3unh_N
          Length = 199

 Score = 43.3 bits (103), Expect = 2e-07
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+AVEFDGGVV+G+DSR S 
Sbjct: 1  TTIMAVEFDGGVVVGSDSRVSA 22


>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
          protease, threonine protease; 4.10A {Methanocaldococcus
          jannaschii}
          Length = 264

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 1/22 (4%), Positives = 3/22 (13%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          + +  V                
Sbjct: 2  SHMQMVPPSAYDRAITVFSPEG 23


>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
          1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
          2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
          3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
          Length = 222

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+ V+F+ GVVI AD+RS+ 
Sbjct: 1  TTIVGVKFNNGVVIAADTRSTQ 22


>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
          Length = 204

 Score = 43.0 bits (102), Expect = 3e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT +A +F  GV++ ADSR++ 
Sbjct: 1  TTTLAFKFRHGVIVAADSRATA 22


>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB;
          2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
          Length = 202

 Score = 42.9 bits (102), Expect = 3e-07
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT + +    GVV+  + R++ 
Sbjct: 1  TTTVGLVCKDGVVMATEKRATM 22


>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
          1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
          2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
          3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
          Length = 212

 Score = 43.0 bits (102), Expect = 3e-07
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT +A  F GG+++  DSR++ 
Sbjct: 1  TTTLAFRFQGGIIVAVDSRATA 22


>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
          1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
          3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
          3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
          Length = 204

 Score = 43.0 bits (102), Expect = 4e-07
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G  ++A+     V I  D R  +
Sbjct: 8  GGIVVAMTGKDCVAIACDLRLGS 30


>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_H* 3une_H
          Length = 234

 Score = 42.7 bits (101), Expect = 4e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI  V +  G+V+GAD+R++ 
Sbjct: 1  TTIAGVVYKDGIVLGADTRATE 22


>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
          NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
          d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
          3nzj_M* 3nzw_M* 3nzx_M*
          Length = 266

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 6  YNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          YN    + G             GT++I++++D GV+I AD+  S 
Sbjct: 19 YNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSY 63


>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
          development, protein degradation, hydrolase-hydrolase
          inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
          3unh_H
          Length = 234

 Score = 42.6 bits (101), Expect = 4e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI  + F  GV++GAD+R++ 
Sbjct: 1  TTIAGLVFRDGVILGADTRATN 22


>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
          inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
          erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
          Length = 294

 Score = 42.7 bits (100), Expect = 5e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 1  MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
                +      G+E+ D   A H  GTTI+A+ + GGV++  D R++ 
Sbjct: 42 RIGHRSHSTRGGDGMESGD--LAPH--GTTIVALTYKGGVLLAGDRRATQ 87


>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
          antigen processing, hydrolase, protease; 1.90A
          {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
          1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
          2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
          3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
          Length = 198

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 2/22 (9%), Positives = 8/22 (36%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
            I+ +     V++ +    + 
Sbjct: 2  DIILGIRVQDSVILASSKAVTR 23


>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
          ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
          d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
          Length = 201

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 3/22 (13%), Positives = 12/22 (54%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
            +I ++    V++ +D  +++
Sbjct: 2  EYLIGIQGPDYVLVASDRVAAS 23


>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
          inter-subunit contacts, RH erythropolis, hydrolase;
          2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
          Length = 235

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+A+ + GGV++  D R++ 
Sbjct: 1  TTIVALTYKGGVLLAGDRRATQ 22


>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
          2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
          1yyf_D* 3ty6_A
          Length = 180

 Score = 37.7 bits (87), Expect = 3e-05
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
           TTI AV+  G   +  D + +
Sbjct: 5  ATTIFAVQHKGRSAMSGDGQVT 26


>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
          influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
          1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
          1ht2_A* 1ned_A
          Length = 174

 Score = 36.1 bits (83), Expect = 1e-04
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI++V  +G VV+G D + S
Sbjct: 1  TTIVSVRRNGQVVVGGDGQVS 21


>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
          residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
          d.153.1.4
          Length = 171

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI+ V  +G  V+G D + +
Sbjct: 1  TTILVVRRNGQTVMGGDGQVT 21


>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly,
          Pro-peptide, inter-subunit contacts, RH erythropolis,
          hydrolase; 2.60A {Rhodococcus erythropolis} SCOP:
          d.153.1.4 PDB: 2h6j_A 1q5r_A
          Length = 259

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G +++ + F  GV+  A++ S+ 
Sbjct: 27 GRSVVVLTFRDGVLFVAENPSTA 49


>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
          endopeptidase comple mycobacterium tuberculosis,
          hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
          PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A
          3hfa_D 3hf9_A 3mfe_D
          Length = 248

 Score = 29.9 bits (67), Expect = 0.016
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
            +++A+ + GGV+  A++ S +
Sbjct: 27 AKSVVALAYAGGVLFVAENPSRS 49


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 0.67
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 3/30 (10%)

Query: 15  VEAP-DWLTAKHSCGTTIIAVEFDGGVVIG 43
           +  P  W T      T I+  +F  G   G
Sbjct: 484 IRLPVKWETTTQFKATHIL--DFGPGGASG 511


>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown
          function, hydrolase activator; 2.55A {Caulobacter
          vibrioides} PDB: 2qaz_A
          Length = 157

 Score = 24.5 bits (53), Expect = 1.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 12 HGGVEAPDWLTAKHSCGTTII 32
            GV  P  L +K+    TI+
Sbjct: 55 AAGVSGPQDLLSKYPDEMTIV 75


>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88,
          structural genomics, PSI-2, protein structure
          initiative; 2.70A {Agrobacterium tumefaciens str} SCOP:
          b.136.1.2
          Length = 176

 Score = 24.6 bits (53), Expect = 1.7
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 12 HGGVEAPDWLTAKHSCGTTIIA 33
            GV     L +K++   TI+ 
Sbjct: 47 APGVRISQHLKSKYAEQMTIVI 68


>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
           EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
           {Carboxydothermus hydrogenoformans z-29organism_taxid}
          Length = 272

 Score = 24.1 bits (53), Expect = 1.7
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 28  GTTIIAVEFDGGVVIGADSR 47
           GTT IAV   G +    D  
Sbjct: 149 GTTGIAVIEKGKITATFDEP 168


>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
          genomics, NPPSFA, national PR protein structural and
          functional analyses; HET: SAH; 2.60A {Thermus
          thermophilus}
          Length = 211

 Score = 24.4 bits (53), Expect = 1.8
 Identities = 3/19 (15%), Positives = 5/19 (26%)

Query: 27 CGTTIIAVEFDGGVVIGAD 45
           GT            +G +
Sbjct: 45 AGTGYWLRRLPYPQKVGVE 63


>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
           structure initiative; HET: MSE; 1.47A {Corynebacterium
           glutamicum atcc 13032}
          Length = 317

 Score = 24.2 bits (52), Expect = 2.3
 Identities = 4/19 (21%), Positives = 6/19 (31%)

Query: 23  AKHSCGTTIIAVEFDGGVV 41
           A     +    VE D  + 
Sbjct: 108 ADVYPQSRNTVVELDAELA 126


>2kw5_A SLR1183 protein; structural genomics, northeast structural
          genomics consortium (NESG), PSI-2, protein structure
          initiative, unknown function; NMR {Synechocystis} PDB:
          3mer_A
          Length = 202

 Score = 23.7 bits (51), Expect = 2.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 1  MWNKDYNVNAYHGGVEAPDWLTA 23
          MW++ ++ + Y  G E  D+L +
Sbjct: 1  MWDERFSQSEYVYGTEPNDFLVS 23


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.132    0.426 

Gapped
Lambda     K      H
   0.267   0.0790    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 819,099
Number of extensions: 32668
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 37
Length of query: 50
Length of database: 6,701,793
Length adjustment: 23
Effective length of query: 27
Effective length of database: 6,059,610
Effective search space: 163609470
Effective search space used: 163609470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)