RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5099
(50 letters)
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 39.6 bits (92), Expect = 2e-06
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G +++ + F GV+ A++ S+
Sbjct: 19 GRSVVVLTFRDGVLFVAENPSTA 41
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus
subtilis [TaxId: 1423]}
Length = 180
Score = 39.0 bits (90), Expect = 3e-06
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
TTI AV+ G + D + +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVT 26
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 233
Score = 38.2 bits (88), Expect = 8e-06
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GT++I++++D GV+I AD+ S
Sbjct: 8 GTSVISMKYDNGVIIAADNLGS 29
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus
influenzae [TaxId: 727]}
Length = 173
Score = 37.8 bits (87), Expect = 9e-06
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TTI++V +G VV+G D + S
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSL 22
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 37.0 bits (85), Expect = 1e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 29 TTIIAVEFDGGVVIGADSRSS 49
TTI+ V +G V+G D + +
Sbjct: 1 TTILVVRRNGQTVMGGDGQVT 21
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 205
Score = 37.0 bits (85), Expect = 2e-05
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G +I+AV F GV++GADSR++T
Sbjct: 9 GASIMAVTFKDGVILGADSRTTT 31
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 37.1 bits (85), Expect = 2e-05
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TTI+A+ + GGV++ D R++
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQ 22
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 212
Score = 37.1 bits (85), Expect = 2e-05
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TT +A F GG+++ DSR++
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATA 22
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 222
Score = 36.7 bits (84), Expect = 2e-05
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TTI+ V+F+ GVVI AD+RS+
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQ 22
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 36.6 bits (84), Expect = 2e-05
Identities = 17/22 (77%), Positives = 22/22 (100%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TTI+AV+FDGGVV+GADSR++T
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTT 22
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 222
Score = 36.7 bits (84), Expect = 2e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G TI+ + + V+ D+R+ T
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNIT 31
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 36.7 bits (84), Expect = 3e-05
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSS 49
GT+++ V+F+GGVVI AD S
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGS 29
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 36.3 bits (83), Expect = 3e-05
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TTI V + G+V+GAD+R++
Sbjct: 1 TTIAGVVYKDGIVLGADTRATE 22
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 36.3 bits (83), Expect = 4e-05
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TT +A +F GV++ ADSR++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATA 22
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 36.0 bits (82), Expect = 5e-05
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G ++A++ V I AD R
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGI 29
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 35.6 bits (81), Expect = 6e-05
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G TI+A+ + ++ +D+R S
Sbjct: 9 GGTILAIAGEDFAIVASDTRLS 30
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 204
Score = 35.2 bits (80), Expect = 7e-05
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G ++A+ V I D R +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGS 30
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 250
Score = 35.1 bits (80), Expect = 9e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G T + ++ GVVI + +SS
Sbjct: 31 GVTSLGIKATNGVVIATEKKSS 52
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 35.1 bits (80), Expect = 1e-04
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G+T + ++F GV++ +D +
Sbjct: 22 GSTALGMKFANGVLLISDKKVR 43
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 242
Score = 35.1 bits (80), Expect = 1e-04
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G+T I + GVV+G + R++
Sbjct: 26 GSTAIGIATKEGVVLGVEKRAT 47
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 34.8 bits (79), Expect = 1e-04
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TT + + V++ + R +
Sbjct: 1 TTTVGITLKDAVIMATERRVTM 22
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 34.6 bits (79), Expect = 1e-04
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G T I ++ GV++ AD R +
Sbjct: 31 GATAIGIKCKEGVILIADKRVGS 53
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 34.6 bits (79), Expect = 1e-04
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
GTT I ++ + GVV + ++
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLITS 52
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 34.3 bits (78), Expect = 2e-04
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
T + + + GV++ A+ R+
Sbjct: 30 AGTCLGILANDGVLLAAERRNIH 52
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 34.4 bits (78), Expect = 2e-04
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
TT + + GVV+ + R++
Sbjct: 1 TTTVGLVCKDGVVMATEKRATM 22
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 34.3 bits (78), Expect = 2e-04
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
T I + G+V+ A+ + +
Sbjct: 31 AGTAIGIMASDGIVLAAERKVT 52
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 33.9 bits (77), Expect = 2e-04
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G + ++ GVV+ + +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQK 52
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 198
Score = 34.0 bits (77), Expect = 3e-04
Identities = 2/21 (9%), Positives = 8/21 (38%)
Query: 29 TTIIAVEFDGGVVIGADSRSS 49
I+ + V++ + +
Sbjct: 2 DIILGIRVQDSVILASSKAVT 22
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 33.9 bits (77), Expect = 3e-04
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G+T + V VV+G + +S
Sbjct: 28 GSTAVGVRGRDIVVLGVEKKSV 49
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 33.8 bits (77), Expect = 3e-04
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
G+ + ++ V+ A R+ +
Sbjct: 29 GSATVGLKSKTHAVLVALKRAQS 51
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 33.5 bits (76), Expect = 3e-04
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G+T I ++ GV + + R +
Sbjct: 27 GSTAIGIQTSEGVCLAVEKRIT 48
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 33.4 bits (76), Expect = 3e-04
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G T +AV VI +
Sbjct: 35 GLTSVAVRGKDCAVIVTQKKVP 56
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 241
Score = 33.5 bits (76), Expect = 4e-04
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
GT + V+ VV+G + RS+
Sbjct: 28 GTCAVGVKGKNCVVLGCERRST 49
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 32.9 bits (74), Expect = 5e-04
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 29 TTIIAVEFDGGVVIGADSRSS 49
+I ++ V++ +D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAA 22
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 233
Score = 32.3 bits (73), Expect = 8e-04
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
G+ + + + V+ A R++
Sbjct: 31 GSVTVGLRSNTHAVLVALKRNA 52
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 31.5 bits (71), Expect = 0.002
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
+T I + GVV G +
Sbjct: 33 SSTAIGIRCKDGVVFGVEKLVL 54
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 243
Score = 31.6 bits (71), Expect = 0.002
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49
A + +AV V+ + +
Sbjct: 25 ATNQTNINSLAVRGKDCTVVISQKKVP 51
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 25.4 bits (56), Expect = 0.22
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 12 HGGVEAPDWLTAKHSCGTTII 32
GV L +K++ TI+
Sbjct: 45 APGVRISQHLKSKYAEQMTIV 65
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella
bronchiseptica [TaxId: 518]}
Length = 128
Score = 22.6 bits (48), Expect = 2.3
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 5 DYNVNAYHGGVEAPDWLTA 23
+ V+ G A W++
Sbjct: 88 EQTVDVVDEGELAAAWISN 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.426
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 200,638
Number of extensions: 5908
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 41
Length of query: 50
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 28
Effective length of database: 2,105,536
Effective search space: 58955008
Effective search space used: 58955008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)