Query psy510
Match_columns 380
No_of_seqs 261 out of 1111
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:18:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 100.0 4E-31 1.4E-35 261.2 16.6 191 2-211 162-357 (357)
2 3rrk_A V-type ATPase 116 kDa s 98.6 5.1E-09 1.7E-13 102.8 0.5 61 313-377 294-357 (357)
3 2xv5_A Lamin-A/C; structural p 63.5 42 0.0014 24.8 9.0 51 77-128 5-55 (74)
4 1gk6_A Vimentin; intermediate 59.4 37 0.0013 23.8 6.8 47 81-128 4-50 (59)
5 2yko_A LINE-1 ORF1P; RNA-bindi 53.1 70 0.0024 28.9 9.2 11 140-151 55-65 (233)
6 2pnv_A Small conductance calci 50.8 44 0.0015 22.1 5.5 33 74-106 6-38 (43)
7 3onj_A T-snare VTI1; helix, HA 50.7 61 0.0021 25.0 7.4 52 73-124 30-88 (97)
8 2l5g_B Putative uncharacterize 49.0 54 0.0018 21.5 5.6 30 74-103 6-35 (42)
9 1x8y_A Lamin A/C; structural p 47.3 88 0.003 23.5 8.9 50 78-128 29-78 (86)
10 2qyw_A Vesicle transport throu 46.3 51 0.0017 25.7 6.4 31 73-103 45-75 (102)
11 3cve_A Homer protein homolog 1 45.7 87 0.003 23.0 8.8 50 80-129 17-66 (72)
12 3swy_A Cyclic nucleotide-gated 45.0 67 0.0023 21.5 7.4 39 81-119 2-40 (46)
13 1gk4_A Vimentin; intermediate 44.8 95 0.0033 23.2 8.9 50 78-128 27-76 (84)
14 3cvf_A Homer-3, homer protein 43.9 99 0.0034 23.1 8.8 51 79-129 22-72 (79)
15 3swf_A CGMP-gated cation chann 42.1 90 0.0031 23.0 6.6 38 81-118 4-41 (74)
16 3tnu_A Keratin, type I cytoske 37.9 1.6E+02 0.0054 23.7 8.9 43 83-126 83-125 (131)
17 3tnu_B Keratin, type II cytosk 37.0 1.6E+02 0.0055 23.6 8.8 44 82-126 80-123 (129)
18 3nmd_A CGMP dependent protein 36.6 93 0.0032 22.8 6.0 25 76-100 25-49 (72)
19 3nmd_A CGMP dependent protein 36.2 70 0.0024 23.5 5.2 15 81-95 23-37 (72)
20 1zxa_A CGMP-dependent protein 34.5 62 0.0021 23.5 4.7 18 78-95 19-36 (67)
21 2l5g_A GPS2 protein, G protein 34.4 90 0.0031 19.9 5.2 28 76-103 7-34 (38)
22 1vcs_A Vesicle transport throu 30.2 1E+02 0.0034 23.9 5.7 52 73-124 34-89 (102)
23 1fxk_C Protein (prefoldin); ar 29.6 2.1E+02 0.0073 22.7 8.0 34 74-107 85-118 (133)
24 3twe_A Alpha4H; unknown functi 28.1 89 0.003 17.9 3.8 9 85-93 9-17 (27)
25 3zym_A Phosphatidylinositol-bi 26.4 44 0.0015 31.5 3.5 44 53-96 256-299 (310)
26 3oja_B Anopheles plasmodium-re 26.4 3.2E+02 0.011 27.2 10.4 13 112-124 547-559 (597)
27 3mov_A Lamin-B1; LMNB1, B-type 26.3 2.2E+02 0.0075 21.8 8.9 48 80-128 40-87 (95)
28 2yy0_A C-MYC-binding protein; 26.2 50 0.0017 22.7 2.8 23 80-102 22-44 (53)
29 1zxa_A CGMP-dependent protein 25.4 1.3E+02 0.0045 21.7 5.1 49 72-124 6-54 (67)
30 2zvf_A Alanyl-tRNA synthetase; 24.9 2.1E+02 0.0073 23.6 7.4 44 50-100 12-55 (171)
31 2zqm_A Prefoldin beta subunit 24.8 2.4E+02 0.0081 21.7 7.6 35 72-106 65-99 (117)
32 2yy0_A C-MYC-binding protein; 23.1 1.6E+02 0.0055 20.1 5.0 29 73-101 22-50 (53)
33 3a7p_A Autophagy protein 16; c 23.0 3.3E+02 0.011 22.8 8.6 22 78-99 69-90 (152)
34 3lvh_D LCB, clathrin light cha 22.4 1.8E+02 0.0062 25.5 6.3 50 71-123 98-147 (205)
35 4dzn_A Coiled-coil peptide CC- 21.6 1.4E+02 0.0047 17.8 5.2 23 79-101 4-26 (33)
36 2k21_A Potassium voltage-gated 21.3 57 0.002 26.7 2.7 17 269-285 55-71 (138)
37 1a92_A Delta antigen; leucine 20.9 2E+02 0.0068 19.4 5.5 27 77-103 4-33 (50)
38 4dzo_A Mitotic spindle assembl 20.7 3.3E+02 0.011 21.8 7.8 13 190-202 86-98 (123)
39 4egx_A Kinesin-like protein KI 20.7 2.9E+02 0.0098 23.6 7.4 28 79-106 7-34 (184)
40 2ve7_C Kinetochore protein NUF 20.5 32 0.0011 31.5 1.2 6 141-146 212-217 (250)
41 4ani_A Protein GRPE; chaperone 20.1 2.6E+02 0.0089 24.7 7.1 27 79-105 61-87 (213)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.97 E-value=4e-31 Score=261.15 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=129.0
Q ss_pred hhhHHHHHHhcCCceEEEeeecCCcccCCCCCCccccEEEEEEEeChhhHHHHHHHHcccCceeecCCCCcc--hHHHHH
Q psy510 2 PAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPEAPT--DRREMS 79 (380)
Q Consensus 2 ~~f~r~l~R~trGn~~~~~~~i~~~~~d~~~ge~~~k~v~ii~~~~~~~~~~v~ki~~~~~~~~~~~p~~~~--~~~~~l 79 (380)
..|+|.|||+++|..+... ++...+.+++++++ ++..+++++||+++|++.+++|+..+ .+.+.+
T Consensus 162 ~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~vv~~~-~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l 228 (357)
T 3rrk_A 162 EAVRKALQEALADRFVLEA------------EPLENQLAALVVVK-RSELEAARSSLSRLGLAELRFPGAYGAMPLGKAA 228 (357)
T ss_dssp HHHHHHHHHHHTTSCEEEE------------EECSSSEEEEEEEE-GGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEe------------ecCCCcEEEEEEEE-HHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHH
Confidence 4789999999999443221 22335666766665 56778999999999999999998777 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcEEEEEEeccccCHHHHHHHHH
Q psy510 80 MGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTLNFFNLDVTQKCLIAECWVPVLDIDAIQLALR 159 (380)
Q Consensus 80 ~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~~~GWvP~~~~~~l~~~l~ 159 (380)
+++++++++++++++++++++.++...+...|..|...+.+++++|++++++ +.|+++++++||||++++++++++|+
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~gWvp~~~~~~~~~~l~ 306 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADM--AAGKYGAALMGWVPQKAKGKVEEALG 306 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCSEEEEEEECTTTHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCcEEEEEEEeeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999965 47899999999999999999999998
Q ss_pred hccccCCCcccceecccCCC---CCCCccccCcccchHHHHHHHHhcCCCCCccC
Q psy510 160 RGTDRSGSSVPPILNRMDTF---EDPPTYNRTNKFTKAFQALIDAYGVSSYREMN 211 (380)
Q Consensus 160 ~~~~~~~~~v~~~~~~~~~~---~~pPT~l~n~~~~~pFE~iv~~Yg~P~Y~EiD 211 (380)
+ ++ ..+...+.+++++ +.|||+++||+|++|||.||+|||+|+|+|||
T Consensus 307 ~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~Yg~p~Y~EiD 357 (357)
T 3rrk_A 307 R-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD 357 (357)
T ss_dssp S-SC---EEEEC-------------------------------------------
T ss_pred h-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHhcCCCCCCCCC
Confidence 7 32 2455666776666 68999999999999999999999999999998
No 2
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=98.61 E-value=5.1e-09 Score=102.77 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=10.6
Q ss_pred ccccchhHHHHHHhhcccCCCCCCCeeecCCCC---CCCCCccccchhhHhHhhhhhhhccCCccccC
Q psy510 313 TNKFTKAFQALIDAYGDRSGSSVPPILNRMDTF---EDPPTYNRTNKFTKAFQALIDAYGVSSYREMN 377 (380)
Q Consensus 313 t~~~~~~~q~ll~~~~~~~~~~~~~~~~~~~~~---~~ppt~~~~n~ft~~fq~~~~~yg~~~y~evn 377 (380)
|++.-..++..+++ .+..+...+....++ ..|||++++|+||.+||.|||+||+|+|+|++
T Consensus 294 p~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~Yg~p~Y~EiD 357 (357)
T 3rrk_A 294 PQKAKGKVEEALGR----LRDQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD 357 (357)
T ss_dssp CTTTHHHHHHTCCS----SCEEEEC-------------------------------------------
T ss_pred eHHHHHHHHHHHHh----cCCceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHhcCCCCCCCCC
Confidence 33444555555553 345666777776666 58999999999999999999999999999985
No 3
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=63.45 E-value=42 Score=24.76 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy510 77 EMSMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTL 128 (380)
Q Consensus 77 ~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 128 (380)
...+..+..|.+++.++.+++.+....+.++ +.|...+..+..+-+.|..|
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776666665 34545556677777777655
No 4
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=59.41 E-value=37 Score=23.82 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy510 81 GVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTL 128 (380)
Q Consensus 81 ~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 128 (380)
+++..|.+++..+.+++.+....+.++ +.|...+..+..+-+.|..|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eY-q~LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLV-GDLLNVKMALDIEIATYRKL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHH
Confidence 455666666666666666666555554 33444455566666666644
No 5
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=53.10 E-value=70 Score=28.90 Aligned_cols=11 Identities=36% Similarity=0.320 Sum_probs=7.1
Q ss_pred EEEEEeccccCH
Q psy510 140 LIAECWVPVLDI 151 (380)
Q Consensus 140 ~~~~GWvP~~~~ 151 (380)
..+-| ||+.+.
T Consensus 55 IRIiG-VPEgee 65 (233)
T 2yko_A 55 LRLIG-VPESDV 65 (233)
T ss_dssp EEEES-CCCCTT
T ss_pred eeEee-cCCCcc
Confidence 45666 887654
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=50.81 E-value=44 Score=22.10 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 74 DRREMSMGVTTRIEDLNTVIGETQDHRHRVLVA 106 (380)
Q Consensus 74 ~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~ 106 (380)
..-+...+++.+-++++++|..++.++..+.+.
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888999888888777666443
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=50.65 E-value=61 Score=24.97 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHH-HHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRHRV--LVA----AAKNIKNWFIKVRK-IKAI 124 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~--~~~----~~~~l~~~~~~~~~-~~~~ 124 (380)
+.....+.++++.+++++..|.+++-+...+ -.. +...+..|+..+.+ .+.-
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999998887777 222 22344555555555 4443
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.00 E-value=54 Score=21.50 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 74 DRREMSMGVTTRIEDLNTVIGETQDHRHRV 103 (380)
Q Consensus 74 ~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~ 103 (380)
...+.+..+.++|...++.|.+++.+++++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777766665554
No 9
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.31 E-value=88 Score=23.51 Aligned_cols=50 Identities=8% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy510 78 MSMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTL 128 (380)
Q Consensus 78 ~l~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 128 (380)
.++.++..|.+++..+.+++.+....+.++ +.|...+..+..+-+.|..|
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EY-q~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHH
Confidence 345566666666666666666655555554 33444455566666666644
No 10
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=46.29 E-value=51 Score=25.68 Aligned_cols=31 Identities=6% Similarity=0.269 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRHRV 103 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~ 103 (380)
+.....+.++++.++|.++.|++.+-+.+.+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677789999999999999999988776665
No 11
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.73 E-value=87 Score=23.00 Aligned_cols=50 Identities=6% Similarity=0.097 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy510 80 MGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTLN 129 (380)
Q Consensus 80 ~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 129 (380)
.+++.++..++..+++.+.+...+-.++...++.+-..+..+..+.+-|.
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666777777777777666555556665556666666666666666554
No 12
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=45.02 E-value=67 Score=21.50 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 81 GVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVR 119 (380)
Q Consensus 81 ~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (380)
+++++++.++.-++.++.+.++++.++...-..+..++.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit 40 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLS 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777888887776544334444443
No 13
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.76 E-value=95 Score=23.16 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy510 78 MSMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTL 128 (380)
Q Consensus 78 ~l~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 128 (380)
.++.++..|..++..+.+++.+....+.++ +.|...+..+..+-+.|..|
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EY-q~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREY-QDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHH
Confidence 455666666667777777666666665554 33444455666666666644
No 14
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=43.95 E-value=99 Score=23.12 Aligned_cols=51 Identities=8% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy510 79 SMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTLN 129 (380)
Q Consensus 79 l~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 129 (380)
-.++++++..++..+++.+.+...+-.++...++.+-..+..+..+.+-|.
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345777777777777777766666656665555666666666666665554
No 15
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.12 E-value=90 Score=23.04 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 81 GVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKV 118 (380)
Q Consensus 81 ~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 118 (380)
.++++++.++.-++.++.+..+++.++...-.++..++
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777654333333333
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.85 E-value=1.6e+02 Score=23.74 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 83 TTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYH 126 (380)
Q Consensus 83 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (380)
+..|.+++..+.+++.++...+.++ +.|...+..+..+-+.|.
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EY-q~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEY-KILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333333444444433333333333 123333334444444444
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.97 E-value=1.6e+02 Score=23.59 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 82 VTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYH 126 (380)
Q Consensus 82 l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (380)
++..|.+++..+.+++.+....+.++. .|...+..+..+-+.|.
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREYQ-ELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333331 23333334444444444
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.64 E-value=93 Score=22.84 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 76 REMSMGVTTRIEDLNTVIGETQDHR 100 (380)
Q Consensus 76 ~~~l~~l~~~i~~l~~~i~~~~~~~ 100 (380)
.++++...++|...+..|++.++++
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.18 E-value=70 Score=23.50 Aligned_cols=15 Identities=0% Similarity=0.074 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy510 81 GVTTRIEDLNTVIGE 95 (380)
Q Consensus 81 ~l~~~i~~l~~~i~~ 95 (380)
+++..+++..++|.+
T Consensus 23 eLq~~L~~K~eELr~ 37 (72)
T 3nmd_A 23 DLQYALQEKIEELRQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444433333333
No 20
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.46 E-value=62 Score=23.46 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy510 78 MSMGVTTRIEDLNTVIGE 95 (380)
Q Consensus 78 ~l~~l~~~i~~l~~~i~~ 95 (380)
.+..-+..|.+++..+.+
T Consensus 19 ~i~~Kde~I~eLE~~L~~ 36 (67)
T 1zxa_A 19 ILMLKEERIKELEKRLSE 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHH
Confidence 333444444444444333
No 21
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.42 E-value=90 Score=19.87 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 76 REMSMGVTTRIEDLNTVIGETQDHRHRV 103 (380)
Q Consensus 76 ~~~l~~l~~~i~~l~~~i~~~~~~~~~~ 103 (380)
...+++.+++|..++..+++++++..++
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888777777665554
No 22
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.23 E-value=1e+02 Score=23.91 Aligned_cols=52 Identities=8% Similarity=0.224 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRHRVL----VAAAKNIKNWFIKVRKIKAI 124 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~ 124 (380)
+.....+.++++.++|.++.|.+++-+.+.+- ..+...+..|+..+.+.+.-
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999887755432 22223445555555554443
No 23
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.61 E-value=2.1e+02 Score=22.71 Aligned_cols=34 Identities=3% Similarity=0.130 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 74 DRREMSMGVTTRIEDLNTVIGETQDHRHRVLVAA 107 (380)
Q Consensus 74 ~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~~ 107 (380)
+..++++-++++++.+++.++.+++.+..+...+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777766666655554443
No 24
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.12 E-value=89 Score=17.85 Aligned_cols=9 Identities=33% Similarity=0.626 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy510 85 RIEDLNTVI 93 (380)
Q Consensus 85 ~i~~l~~~i 93 (380)
+++++++.+
T Consensus 9 eledlqerl 17 (27)
T 3twe_A 9 ELEDLQERL 17 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 25
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=26.43 E-value=44 Score=31.48 Aligned_cols=44 Identities=7% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHcccCceeecCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy510 53 RVMKICEGFRATLYPCPEAPTDRREMSMGVTTRIEDLNTVIGET 96 (380)
Q Consensus 53 ~v~ki~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~i~~~ 96 (380)
+.-+.|++++....++|+.+..+.+.++.+++++++.+..+.+.
T Consensus 256 ~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~n 299 (310)
T 3zym_A 256 EFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQN 299 (310)
T ss_dssp HHHHHHHHTC------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 34456788887777888877778888888998888877766554
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.42 E-value=3.2e+02 Score=27.15 Aligned_cols=13 Identities=8% Similarity=-0.110 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy510 112 KNWFIKVRKIKAI 124 (380)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (380)
+.+..++++.++.
T Consensus 547 ~~le~~~~~~~~~ 559 (597)
T 3oja_B 547 IALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhH
Confidence 3344444444433
No 27
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.26 E-value=2.2e+02 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy510 80 MGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTL 128 (380)
Q Consensus 80 ~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 128 (380)
+.++..|..++..+.+++.+...-+.++ +.|...+..+..+-+.|..|
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EY-q~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDY-EQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333 22333344455555555543
No 28
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.17 E-value=50 Score=22.72 Aligned_cols=23 Identities=0% Similarity=0.071 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy510 80 MGVTTRIEDLNTVIGETQDHRHR 102 (380)
Q Consensus 80 ~~l~~~i~~l~~~i~~~~~~~~~ 102 (380)
+.++.+.++++.+++++.++..+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444433
No 29
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.38 E-value=1.3e+02 Score=21.73 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 72 PTDRREMSMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAI 124 (380)
Q Consensus 72 ~~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 124 (380)
+++.....+++.+.+...+..|.+++..+.+.- ..+..++..+.|..++
T Consensus 6 ~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd----~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 6 PGSTSELEEDFAKILMLKEERIKELEKRLSEKE----EEIQELKRKLHKCQSV 54 (67)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC--
T ss_pred CCcchHHHHHHHHHHHccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 444444455566666666666666555543332 2234445555555554
No 30
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.90 E-value=2.1e+02 Score=23.57 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=27.3
Q ss_pred hHHHHHHHHcccCceeecCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 50 LKTRVMKICEGFRATLYPCPEAPTDRREMSMGVTTRIEDLNTVIGETQDHR 100 (380)
Q Consensus 50 ~~~~v~ki~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~i~~~~~~~ 100 (380)
..+.+.+++..+++. +.+..+.++.+.+++.++++++++.+.++
T Consensus 12 ~~~~l~~~a~~Lk~~-------~~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 12 MERLLREASSILRVE-------PAKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHTTTCC-------TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666676666652 12455666777777777777776665553
No 31
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.78 E-value=2.4e+02 Score=21.66 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 72 PTDRREMSMGVTTRIEDLNTVIGETQDHRHRVLVA 106 (380)
Q Consensus 72 ~~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~ 106 (380)
.....++...++++++.++..++.+++++..+-..
T Consensus 65 ~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888899999999988888887776655444
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.12 E-value=1.6e+02 Score=20.07 Aligned_cols=29 Identities=7% Similarity=-0.109 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRH 101 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~ 101 (380)
+......+++++++++++++++++++++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555677788888888888888776653
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.02 E-value=3.3e+02 Score=22.77 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy510 78 MSMGVTTRIEDLNTVIGETQDH 99 (380)
Q Consensus 78 ~l~~l~~~i~~l~~~i~~~~~~ 99 (380)
.+..+++++..++..+.+.+.+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeee 90 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEV 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444444433
No 34
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=22.45 E-value=1.8e+02 Score=25.53 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=28.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 71 APTDRREMSMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKA 123 (380)
Q Consensus 71 ~~~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 123 (380)
.++..++..++-+++|+++.. ..+++..+..++..++|+.|+.+....+.
T Consensus 98 EPEsIRkWREEq~kRLeekDa---~sekkk~E~rekAkKeLddwY~~yneqlE 147 (205)
T 3lvh_D 98 EPESIRKWREEQRKRLQELDA---ASKVMEQEWREKAKKDLEEWNQRQSEQVE 147 (205)
T ss_dssp STTHHHHHHHHHTTTSTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444 33344455556666788888776544444
No 35
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.57 E-value=1.4e+02 Score=17.81 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy510 79 SMGVTTRIEDLNTVIGETQDHRH 101 (380)
Q Consensus 79 l~~l~~~i~~l~~~i~~~~~~~~ 101 (380)
+..++++|..++++|..++-++.
T Consensus 4 iaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655554443
No 36
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=21.34 E-value=57 Score=26.72 Aligned_cols=17 Identities=29% Similarity=0.809 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHh
Q psy510 269 YIILLMGLFSMYTGLIY 285 (380)
Q Consensus 269 ~il~~~Gi~si~~G~ly 285 (380)
||+++||+++++.|-|-
T Consensus 55 YIL~vmgffgff~~GIm 71 (138)
T 2k21_A 55 YVLMVLGFFGFFTLGIM 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 89999999988765543
No 37
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.92 E-value=2e+02 Score=19.36 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=15.7
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy510 77 EMSMGV---TTRIEDLNTVIGETQDHRHRV 103 (380)
Q Consensus 77 ~~l~~l---~~~i~~l~~~i~~~~~~~~~~ 103 (380)
+.++++ .++.+++++.+..+++.++++
T Consensus 4 e~LeqWv~~Rkk~eeler~lrk~kk~iKkl 33 (50)
T 1a92_A 4 DILEQWVSGRKKLEELERDLRKLKKKIKKL 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444 566666666666666655554
No 38
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.75 E-value=3.3e+02 Score=21.81 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=7.1
Q ss_pred ccchHHHHHHHHh
Q psy510 190 KFTKAFQALIDAY 202 (380)
Q Consensus 190 ~~~~pFE~iv~~Y 202 (380)
.|.+-.+..++.|
T Consensus 86 ~f~~~~~~~i~~~ 98 (123)
T 4dzo_A 86 EFSHTVGELIEVH 98 (123)
T ss_dssp TTGGGCHHHHHHH
T ss_pred hhHhHHHHHHHHH
Confidence 4555555565554
No 39
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=20.68 E-value=2.9e+02 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 79 SMGVTTRIEDLNTVIGETQDHRHRVLVA 106 (380)
Q Consensus 79 l~~l~~~i~~l~~~i~~~~~~~~~~~~~ 106 (380)
-+++.+++++-++.++++++..++.+++
T Consensus 7 ~ee~~e~L~~~e~l~~el~~tWeeKl~~ 34 (184)
T 4egx_A 7 SEEAIERLKETEKIIAELNETWEEKLRR 34 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456666666666666665554444433
No 40
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.48 E-value=32 Score=31.45 Aligned_cols=6 Identities=0% Similarity=-0.108 Sum_probs=3.2
Q ss_pred EEEEec
Q psy510 141 IAECWV 146 (380)
Q Consensus 141 ~~~GWv 146 (380)
.+.||+
T Consensus 212 ~i~g~~ 217 (250)
T 2ve7_C 212 MVKGIH 217 (250)
T ss_dssp CEEEEC
T ss_pred hhceee
Confidence 345655
No 41
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.08 E-value=2.6e+02 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 79 SMGVTTRIEDLNTVIGETQDHRHRVLV 105 (380)
Q Consensus 79 l~~l~~~i~~l~~~i~~~~~~~~~~~~ 105 (380)
++.++.+++++++++.+.++++.++..
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~A 87 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYA 87 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666555444433
Done!