Query psy510
Match_columns 380
No_of_seqs 261 out of 1111
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 17:18:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy510.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/510hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 44.9 27 0.002 24.8 6.4 31 73-103 27-57 (89)
2 d1ciia1 f.1.1.1 (A:451-624) Co 34.4 5.8 0.00042 32.3 1.1 32 213-244 131-162 (174)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.9 1.3E+02 0.0092 22.0 8.0 34 73-106 84-117 (133)
4 d2clyb1 f.53.1.1 (B:4-123) ATP 22.9 96 0.007 23.0 6.4 19 50-71 62-80 (120)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 22.4 26 0.0019 19.6 2.1 17 222-238 11-27 (32)
6 d1ykhb1 a.252.1.1 (B:2-130) RN 22.4 1.2E+02 0.0084 22.8 6.9 40 67-106 78-120 (129)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 20.7 1.1E+02 0.0081 21.7 6.3 34 73-106 61-94 (107)
8 d2ivya1 d.58.58.1 (A:2-89) Hyp 16.6 1E+02 0.0073 21.5 5.0 27 41-67 4-32 (88)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 16.4 30 0.0022 19.2 1.4 9 218-226 10-18 (32)
10 d1yf2a2 d.287.1.2 (A:221-425) 16.2 89 0.0065 23.5 5.2 6 53-58 130-135 (205)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.88 E-value=27 Score=24.77 Aligned_cols=31 Identities=10% Similarity=0.325 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRHRV 103 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~ 103 (380)
+.....+.++++.+++....|++++-+.+.+
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~ 57 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREI 57 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 4567788999999999999999988775543
No 2
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=34.35 E-value=5.8 Score=32.29 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.0
Q ss_pred CchhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy510 213 TPYTIITFPFLFAVMFGDLGHGAIMFLFAAWM 244 (380)
Q Consensus 213 T~~~aitFp~fFG~MfGD~GyGlll~l~~~~l 244 (380)
|.+++.+|++..|-.+|=+|+++++.++|.++
T Consensus 131 sav~a~~fs~~~g~~lgi~g~ali~~~v~a~I 162 (174)
T d1ciia1 131 TALVALVFSILTGSALGIIGYGLLMAVTGALI 162 (174)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999999999999886
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.93 E-value=1.3e+02 Score=21.99 Aligned_cols=34 Identities=3% Similarity=0.137 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRHRVLVA 106 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~ 106 (380)
.+..++++-++++++++++.++.+..++.++-..
T Consensus 84 ~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~ 117 (133)
T d1fxkc_ 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777766665555443
No 4
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.88 E-value=96 Score=23.01 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=11.8
Q ss_pred hHHHHHHHHcccCceeecCCCC
Q psy510 50 LKTRVMKICEGFRATLYPCPEA 71 (380)
Q Consensus 50 ~~~~v~ki~~~~~~~~~~~p~~ 71 (380)
+-+++++-..++. +++|.+
T Consensus 62 ~VD~fek~y~alk---vp~p~d 80 (120)
T d2clyb1 62 LVDDFEKKFNALK---VPIPED 80 (120)
T ss_dssp HHHHHHHHHTTCC---CCCCCC
T ss_pred HHHHHHHHHhccc---CCCChh
Confidence 4466777666665 566654
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.42 E-value=26 Score=19.62 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhHHHHHH
Q psy510 222 FLFAVMFGDLGHGAIMF 238 (380)
Q Consensus 222 ~fFG~MfGD~GyGlll~ 238 (380)
+-||++|--.|-|.+|+
T Consensus 11 lsfglifvgwglgalll 27 (32)
T d2e74f1 11 LSFGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHHHh
Confidence 45788887777776554
No 6
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.39 E-value=1.2e+02 Score=22.76 Aligned_cols=40 Identities=5% Similarity=0.060 Sum_probs=18.2
Q ss_pred cCCCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 67 PCPEAPTDR---REMSMGVTTRIEDLNTVIGETQDHRHRVLVA 106 (380)
Q Consensus 67 ~~p~~~~~~---~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~ 106 (380)
.+|+...+. .+.+.+|+++.++.++++.+..++.+++++.
T Consensus 78 sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~ 120 (129)
T d1ykhb1 78 SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 120 (129)
T ss_dssp HSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466543222 3344555555555555444444443333333
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.66 E-value=1.1e+02 Score=21.71 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy510 73 TDRREMSMGVTTRIEDLNTVIGETQDHRHRVLVA 106 (380)
Q Consensus 73 ~~~~~~l~~l~~~i~~l~~~i~~~~~~~~~~~~~ 106 (380)
....++..+++.+++.++..++.+.+.+..+-.+
T Consensus 61 ~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~ 94 (107)
T d1fxka_ 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999998988888877776555444
No 8
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=16.62 E-value=1e+02 Score=21.49 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=18.2
Q ss_pred EEEEE-e-ChhhHHHHHHHHcccCceeec
Q psy510 41 FIIFF-Q-GDQLKTRVMKICEGFRATLYP 67 (380)
Q Consensus 41 ~ii~~-~-~~~~~~~v~ki~~~~~~~~~~ 67 (380)
++|+| - .+....+|.++|+++|..++-
T Consensus 4 ~lV~YDI~d~krr~kv~k~l~~yGl~rvQ 32 (88)
T d2ivya1 4 YLIFYDITDDNLRNRVAEFLKKKGLDRIQ 32 (88)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCcceE
Confidence 44444 2 234668999999999975543
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.38 E-value=30 Score=19.18 Aligned_cols=9 Identities=11% Similarity=0.622 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q psy510 218 ITFPFLFAV 226 (380)
Q Consensus 218 itFp~fFG~ 226 (380)
.|-.+|||+
T Consensus 10 vfialffgi 18 (32)
T d2e74e1 10 VFIALFFGI 18 (32)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444444
No 10
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=16.24 E-value=89 Score=23.53 Aligned_cols=6 Identities=0% Similarity=0.074 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy510 53 RVMKIC 58 (380)
Q Consensus 53 ~v~ki~ 58 (380)
.+.+..
T Consensus 130 ~~~~~~ 135 (205)
T d1yf2a2 130 LLENLS 135 (205)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 333433
Done!