RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy510
(380 letters)
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 351 bits (903), Expect = e-115
Identities = 144/287 (50%), Positives = 184/287 (64%), Gaps = 20/287 (6%)
Query: 1 MPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEG 60
+ AFER LWRACRG ++RQAEIE PLED K+VFIIFF G + +V KI +
Sbjct: 154 LEAFERELWRACRG--YIRQAEIEEPLEDPK------KTVFIIFFVGKEDLDKVKKILDS 205
Query: 61 FRATLYPCPEAPTDRREMSMGVTTRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRK 120
F LY PE +R E+ V RIE+L V+ +T+ H +VLV A + W +V K
Sbjct: 206 FGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSK 265
Query: 121 IKAIYHTLNFFNLDVTQKCLIAECWVPVLDIDAIQLALRRGTDRSGSSVPPILNRMDTFE 180
KA+Y TLN FN K LIAE WVP D++ ++ AL T+ SGS VP I N ++T E
Sbjct: 266 EKAVYETLNLFN--YDTKTLIAEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNE 322
Query: 181 DPPTYNRTNKFTKAFQALIDAYGVSSYREMNPTPYTIITFPFLFAVMFGDLGHGAIMFLF 240
+PPTY + NKFT FQ ++DAYG+ YRE++PTP+TIITFPF F +MFGD G+G +MFL
Sbjct: 323 EPPTYLKNNKFTAPFQMIVDAYGIPKYREIDPTPFTIITFPFFFGMMFGDAGYGLLMFLI 382
Query: 241 AAWMVMKEKPLMTLKTDNEIWKIFFGGRYIILLMGLFSMYTGLIYND 287
A +V+ EK L K F GRYI+LLMG+FS+YTG IYND
Sbjct: 383 ALLLVLLEKKLGKKK---------FKGRYILLLMGVFSIYTGFIYND 420
Score = 79.3 bits (196), Expect = 5e-16
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 309 TYNRTNKFTKAF--------------QALIDAYGDRSGSSVPPILNRMDTFEDPPTYNRT 354
T N N TK +A ++ + SGS VP I N ++T E+PPTY +
Sbjct: 272 TLNLFNYDTKTLIAEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNEEPPTYLKN 330
Query: 355 NKFTKAFQALIDAYGVSSYREMNPS 379
NKFT FQ ++DAYG+ YRE++P+
Sbjct: 331 NKFTAPFQMIVDAYGIPKYREIDPT 355
Score = 57.8 bits (140), Expect = 5e-09
Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 288 DRSGSSVPPILNRMDTFEDPPTYNRTNKFTKAFQALIDAYG 328
+ SGS VP I N ++T E+PPTY + NKFT FQ ++DAYG
Sbjct: 306 EGSGS-VPSIENDIETNEEPPTYLKNNKFTAPFQMIVDAYG 345
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 147 bits (374), Expect = 3e-39
Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 12/264 (4%)
Query: 24 ETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPEAPTDRREMSMGVT 83
E G+ V SV I+ G + +V KI LY PE E+ +
Sbjct: 176 VIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELE 235
Query: 84 TRIEDLNTVIGETQDHRHRVLVAAAKNIKNWFIKVRKIKAIYHTLNFFNLDVTQKCLIAE 143
I ++ + + + A+ + + KA+ L+ T+ L E
Sbjct: 236 EVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLSKLA--RTEYTLAIE 293
Query: 144 CWVPVLDIDAIQLALRRGTDRSGSSVPPILNRMDTFEDPPTYNRTNKFTKAFQALIDAYG 203
WVP +++ ++ + R T + + E+ PT R KF F++L + YG
Sbjct: 294 GWVPADEVEKLKKIINRATGGAAYFEVSETDEDK--EEVPTKLRNPKFISPFESLTEMYG 351
Query: 204 VSSYREMNPTPYTIITFPFLFAVMFGDLGHGAIMFLFAAWMVMKEKPLMTLKTDNEIWKI 263
+ Y E++PTP+ + FP F +MFGDLG+G ++FL + ++ K K E K
Sbjct: 352 IPKYGEIDPTPFLALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFK-----KRLPEGLKK 406
Query: 264 FFGGRYIILLMGLFSMYTGLIYND 287
I+L +G+ ++ G +Y +
Sbjct: 407 LG---KILLYLGISTIIWGFLYGE 427
Score = 46.2 bits (110), Expect = 2e-05
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 315 KFTKAFQALIDAYGDRSGSSVPPILNRMDTFEDPPTYNRTNKFTKAFQALIDAYGVSSYR 374
+ + +I+ + + E+ PT R KF F++L + YG+ Y
Sbjct: 299 DEVEKLKKIINRATGGAAYFEVSETDEDK--EEVPTKLRNPKFISPFESLTEMYGIPKYG 356
Query: 375 EMNPS 379
E++P+
Sbjct: 357 EIDPT 361
Score = 33.5 bits (77), Expect = 0.22
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 305 EDPPTYNRTNKFTKAFQALIDAYG 328
E+ PT R KF F++L + YG
Sbjct: 328 EEVPTKLRNPKFISPFESLTEMYG 351
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 99.2 bits (248), Expect = 1e-22
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 141 IAECWVPVLDIDAIQLALRRGTDRSG--SSVPPILNRMDTFEDPPTYNRTNKFTKAFQAL 198
E WVP + ++ + + T S V P + E+ PT + KF K F++L
Sbjct: 277 AIEGWVPEDRVKKLKELIDKATGGSAYVEFVEP----DEEEEEVPTKLKNPKFIKPFESL 332
Query: 199 IDAYGVSSYREMNPTPYTIITFPFLFAVMFGDLGHGAIMFLFAAWMVMKEKPLMTLKTDN 258
+ Y + Y E++PTP+ I FP F +M GD G+G ++ L + K K +
Sbjct: 333 TEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKK------S 386
Query: 259 EIWKIFFGGRYIILLMGLFSMYTGLIYN 286
E K I++ +G+ ++ GL+
Sbjct: 387 EGLKRLL---KILIYLGISTIIWGLLTG 411
Score = 37.2 bits (87), Expect = 0.014
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 346 EDPPTYNRTNKFTKAFQALIDAYGVSSYREMNPS 379
E+ PT + KF K F++L + Y + Y E++P+
Sbjct: 314 EEVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPT 347
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 305 EDPPTYNRTNKFTKAFQALIDAYG 328
E+ PT + KF K F++L + Y
Sbjct: 314 EEVPTKLKNPKFIKPFESLTEMYS 337
>gnl|CDD|224588 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 32.5 bits (74), Expect = 0.43
Identities = 9/97 (9%), Positives = 24/97 (24%), Gaps = 6/97 (6%)
Query: 210 MNPTPYTIITFPFLFAVMFGDLGHGAIMFLFAAWMVMKEKPLMTLKTDNEIWKIFFGGRY 269
+P P + + + + + FL V +++
Sbjct: 50 HHPDPAVLKSIVGILSQRIWERKFNDPDFLLIRLGVGIRGN------PATSFELNAKSYE 103
Query: 270 IILLMGLFSMYTGLIYNDDRSGSSVPPILNRMDTFED 306
L + + RS P ++ ++
Sbjct: 104 FPRLEPVLHEALRKFLREYRSIEDAPKGVDLLEVPGI 140
>gnl|CDD|226789 COG4339, COG4339, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 208
Score = 28.4 bits (63), Expect = 5.3
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 301 MDTFEDPPTYNR--TNKFTKAFQALIDAYG--DRSGSSVPPILNRMDTFEDPPTYNR 353
+ ++ +K T+ F LI AY DR ++ I + T + T +
Sbjct: 4 AEDYQWQQLLQNLGVDKTTQVFTHLIAAYSSPDRHYHTLKHISAVLQTIQTLRTLAQ 60
>gnl|CDD|188611 TIGR04096, dnd_rel_methyl, DNA phosphorothioation-associated
putative methyltransferase. Members of this protein
family show distant local sequence similarity to a
number of S-adenosyl-methionine-dependent
methyltransferases. The family is identified by Partial
Phylogenetic Profiling as closely tied to the DNA
phosphorothioation system (dnd), and members are found
adjacent to dnd genes in at least 13 species
(Streptomyces lividans TK24, Shewanella frigidimarina
NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc
punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The
DNA phosphorothioation enables a novel form of
restriction enzyme activity. Most members of this family
appear in species with the DNA phosphorothioation system
[DNA metabolism, Restriction/modification].
Length = 478
Score = 28.8 bits (65), Expect = 5.3
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 327 YGDRSGSSVPPILNRMDTF--EDPPTYNRTNKFTKAFQ 362
+ D PP L+R + F D P Y + K TK
Sbjct: 405 FRDYVREENPPPLHRKELFVTPDYPDYEKFAKLTKQEV 442
>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase;
Provisional.
Length = 325
Score = 28.5 bits (64), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 263 IFFGGRYIILLMGLFSMYTGLIYNDDRS 290
F G ++I MGL Y G IYND R+
Sbjct: 277 TFIGAQFIG--MGLLGEYIGRIYNDVRA 302
>gnl|CDD|234413 TIGR03952, metzin_BF0631, zinc-dependent metalloproteinase
lipoprotein, BF0631 family. Members of this protein
family are zinc-dependent metalloproteinases, related to
ulilysin and other members of the pappalysin family.
Members occur as predicted lipoproteins and occur mostly
in the genera Bacteriodes and Prevotella [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 351
Score = 28.2 bits (63), Expect = 7.0
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 302 DTFEDPPTYNRTNKFTKAFQALIDA-YGDRSGSSVPPILNRMD----TFEDPPT------ 350
D ED PTYNR + K Q I + + + + + R + TFE
Sbjct: 266 DYCEDTPTYNR-KAYDKWLQEYIKKHDANLTYADLNELFKRTNCSGKTFE--SNNIMDYA 322
Query: 351 YNRTNKFTK 359
+ +N+FT
Sbjct: 323 ISYSNRFTP 331
>gnl|CDD|151661 pfam11219, DUF3014, Protein of unknown function (DUF3014). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 158
Score = 27.6 bits (62), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 177 DTFEDPPTYNRTNKFTKAFQALIDAYGVSSYREMNP 212
T DP +Y R + + A +L V+ YRE+ P
Sbjct: 40 KTVIDPASYARYDPYVDAIASLDPQALVALYRELYP 75
Score = 27.6 bits (62), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 343 DTFEDPPTYNRTNKFTKAFQALIDAYGVSSYREMNP 378
T DP +Y R + + A +L V+ YRE+ P
Sbjct: 40 KTVIDPASYARYDPYVDAIASLDPQALVALYRELYP 75
>gnl|CDD|180486 PRK06246, PRK06246, fumarate hydratase; Provisional.
Length = 280
Score = 27.8 bits (63), Expect = 8.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 16 VFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVM 55
+LR++ + PL N+GD + GD+LK V
Sbjct: 104 GYLRKSVVADPLTRKNTGDNTPAVIHTEIVPGDKLKITVA 143
>gnl|CDD|234110 TIGR03113, exosortase_2, exosortase B. The predicted
protein-sorting transpeptidase that we call exosortase
(see TIGR02602) has distinct subclasses that associated
with different types of exopolysaccharide production
loci. We designate this relatively uncommon
proteobacterial type to be type 2. We propose the gene
symbol xrtB. Most species encountered so far with xrtB
also contain xrtA (TIGR03109).
Length = 268
Score = 27.8 bits (62), Expect = 9.6
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 229 GDLGHGAIMFLFAAWMVMKEKPLMTLKTDNEIWKIFFGGRYIILLMGL 276
+ HG I+ + A W++ +++ + + + G + +L+ GL
Sbjct: 27 EEQAHGPIVLIVALWLIWQQRHAVFHDEEVTPTRPATG--WALLIFGL 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.428
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,246,148
Number of extensions: 2001890
Number of successful extensions: 2236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2224
Number of HSP's successfully gapped: 42
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)