RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy510
         (380 letters)



>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 118

 Score = 25.2 bits (55), Expect = 7.8
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 295 PPILNRMDTFEDPPTYNRTNKFTKAFQALIDAYGD 329
                R++  E    Y      TK  +A +  +G 
Sbjct: 60  KETFERINEIEIGTGYRLVEVSTKFGKAFLWEWGS 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0371    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,483,127
Number of extensions: 70389
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 3
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.6 bits)