BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5101
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 89/111 (80%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+Y+ANRV DKLT + D+I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF
Sbjct: 57 SYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLF 116
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y
Sbjct: 117 KEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSY 167
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 89/111 (80%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+Y+ANRV DKLT + D+I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF
Sbjct: 57 SYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLF 116
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y
Sbjct: 117 KEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSY 167
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 88/111 (79%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+Y+ANRV DKLT + D I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF
Sbjct: 58 SYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLF 117
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y
Sbjct: 118 KEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSY 168
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 88/111 (79%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+Y+ANRV DKLT + D I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF
Sbjct: 58 SYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLF 117
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y
Sbjct: 118 KEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSY 168
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6
PE=1 SV=1
Length = 214
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 85/111 (76%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
AY+ANRV +K+T + + IYCCRSGSAADTQAISD+V Y L++ EL +EP V + A LF
Sbjct: 38 AYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLF 97
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
Q L YS +++L AGII AGWD+ +GG VY I LGG +++Q A+GGSGSTY
Sbjct: 98 QLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTY 148
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 84/111 (75%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
AY+ANRV DKLT++TDNI+CCRSGSAADTQ ++D + Y L + R++ G +P V++ A L
Sbjct: 48 AYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLA 107
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
E+ Y ++ L+AG+I AG+D K GG VY IPLGG L +Q +A+GGSGS +
Sbjct: 108 SEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAF 158
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
AY+ANRV DKLTRV D I+CCRSGSAADTQAI+D V Y+L+L + G P + A +F
Sbjct: 43 AYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYG-TPSTETAASVF 101
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+EL Y +D+LTAGII AG+D K G+VY IPLGG + + A+ GSGST+
Sbjct: 102 KELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTF 152
>sp|Q3SZC2|PSB9_BOVIN Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1
Length = 219
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV DKL+ + +IYC SGSAAD QAI+D +Y L+L MEL E PLV + A + +
Sbjct: 46 VVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRN 105
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y YR+ L+A ++ AGWD+++GGQVY + GML+RQ A+GGSGSTY
Sbjct: 106 ITYKYREDLSAHLMVAGWDQREGGQVYGT-MSGMLIRQPFAIGGSGSTY 153
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
YVANR +DK+T++TDN+Y CRSGSAAD+Q +SD+V Y L ++LG+ V A L +
Sbjct: 38 YVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTR 97
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
L Y+ +D L G+I GWD+ +GG++Y IP GG ++ Q A+GGSGS+Y
Sbjct: 98 LLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSY 147
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
YVANR +DK+T++TDN+Y CRSGSAAD+Q +SD+V Y L ++ G+ V A L +
Sbjct: 37 YVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIR 96
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
L Y+ ++ L G+I GWD+ +GG++Y IPLGG ++ Q A+GGSGS+Y
Sbjct: 97 MLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSY 146
>sp|P28065|PSB9_HUMAN Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2
Length = 219
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV DKL+ + + IYC SGSAAD QA++D +Y L+L +EL E PLV + A + +
Sbjct: 46 VVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRN 105
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y YR+ L+A ++ AGWD+++GGQVY LGGML RQ A+GGSGST+
Sbjct: 106 ISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTF 153
>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3
SV=1
Length = 217
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV +KL+ + D IYC SGSAAD Q I++ V+Y LD+ +E+ E+P V S A L +
Sbjct: 44 VVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKN 103
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y Y++ L+A +I AGWDR+ GGQV+ LGG+L RQ A+GGSGS+Y
Sbjct: 104 ISYKYKEELSAHLIVAGWDRRDGGQVFAT-LGGLLTRQPFAIGGSGSSY 151
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2
SV=1
Length = 217
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV +KL+ + D IYC SGSAAD Q I++ V+Y LD+ +E+GE+P V S A L +
Sbjct: 44 VVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKN 103
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y Y++ L+A +I AGWD++ GGQVY + L G+L RQ A+GGSGS+Y
Sbjct: 104 ISYKYKEDLSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSY 151
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1
Length = 217
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV +KL+ + D IYC SGSAAD Q I++ V+Y LD+ +E+GE+P V S A L +
Sbjct: 44 VVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKN 103
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y Y++ L+A +I AGWD++ GGQVY + L G+L RQ A+GGSGS Y
Sbjct: 104 ISYKYKEELSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAY 151
>sp|A7KII6|PB6LB_SALSA Proteasome subunit beta type-6-B like protein OS=Salmo salar
GN=psmb6l-b PE=3 SV=1
Length = 217
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 74/111 (66%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+YV+++ +KL +V D I+CC +GS AD QA++ + + +++ PLV + A +
Sbjct: 41 SYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVL 100
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+EL Y+ ++ L AG I AGWDRKKG QVY + LGGML+ Q +GGSGSTY
Sbjct: 101 KELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTY 151
>sp|A7KE01|PB6LA_SALSA Proteasome subunit beta type-6-A like protein OS=Salmo salar
GN=psmb6l-a PE=3 SV=1
Length = 217
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 74/111 (66%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+YV+++ +KL +V D I+CC +GS AD QA++ + + +++ PLV + A +
Sbjct: 41 SYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVL 100
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+EL Y+ ++ L AG I AGWDRKKG QVY + LGGML+ Q +GGSGSTY
Sbjct: 101 KELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTY 151
>sp|P28077|PSB9_RAT Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1
SV=2
Length = 219
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
A V NRV DKL+ + IYC SGSAAD QAI+D +Y L+L +EL E PLV + A +
Sbjct: 44 AAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIV 103
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ + Y YR+ L A ++ AGWD+ +GGQVY +GGML+RQ A+GGSGSTY
Sbjct: 104 KNISYKYREDLLAHLMVAGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTY 153
>sp|O35521|PSB9_MUSDU Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1
Length = 219
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
A V NRV DKL+ + I+C SGSAAD QAI+D +Y L+L +EL E PLV + A +
Sbjct: 44 AAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVV 103
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ + Y YR+ L A +I AGWD+++GGQVY +GGML+RQ +GGSGS+Y
Sbjct: 104 KNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSY 153
>sp|P28076|PSB9_MOUSE Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV DKL+ + I+C SGSAAD QAI+D +Y L+L +EL E PLV + A + +
Sbjct: 46 VVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKN 105
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y YR+ L A +I AGWD+++GGQVY +GGML+RQ +GGSGS+Y
Sbjct: 106 ISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSY 153
>sp|O35524|PSB9_MUSSI Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV DKL+ + I+C SGSAAD QAI+D +Y L+L +EL E PLV + A + +
Sbjct: 46 VVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKN 105
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y YR+ L A +I AGWD+++GGQVY +GGML+RQ +GGSGS+Y
Sbjct: 106 ISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSY 153
>sp|O35523|PSB9_MUSPL Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1
Length = 219
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV DKL+ + I+C SGSAAD QAI+D +Y L+L +EL E PLV + A + +
Sbjct: 46 VVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKN 105
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y YR+ L A +I AGWD+++GGQVY +GGML+RQ +GGSGS+Y
Sbjct: 106 ISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSY 153
>sp|O35522|PSB9_MUSMB Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9
PE=1 SV=1
Length = 219
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
V NRV DKL+ + I+C SGSAAD QAI+D +Y L+L +EL E PLV + A + +
Sbjct: 46 VVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKN 105
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y YR+ L A +I AGWD+++GGQVY +GGML+RQ + GSGS+Y
Sbjct: 106 ISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSY 153
>sp|Q8SR11|PSB1_ENCCU Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE3 PE=1 SV=1
Length = 203
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
AYV++RV DKLT++TD I+ CRSGS+ADTQ IS ++ L + P V A L
Sbjct: 34 AYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALA 93
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+++Y SL AG+I AG+D K +V+ I LGG L + A+GGSGS +
Sbjct: 94 SKIIYE-NPSLLAGLIVAGYDDKP--RVFNISLGGSLTERDWAIGGSGSAF 141
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ +K+ + NIYCC +G+AADT+A++D VS L L R + G + V + L ++
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKK 124
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
++SY+ ++A ++ G D G ++ I G A GSGS
Sbjct: 125 HLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGS 170
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ +K+ + NIYCC +G+AADT+A++D VS L L R + G + V + L ++
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKK 124
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
++SY+ ++A ++ G D G ++ I G A GSGS
Sbjct: 125 HLFSYQGHVSAALVLGGVDI-TGPHLHTIYPHGSTDTLPFATMGSGS 170
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ +K+ + DNIYCC +G+AADT++ + +S L L ++ G++ V + + ++
Sbjct: 60 VADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQ 119
Query: 63 LVYSYRDSLTAGIICAGWD 81
+++ Y+ ++A +I G D
Sbjct: 120 MLFKYQGHISAALILGGID 138
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1
Length = 277
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ ++
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQ 128
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
+++ Y+ + A ++ G D G +Y I G + GSGS
Sbjct: 129 MLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGS 174
>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1
Length = 277
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ ++
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQ 128
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
+++ Y+ + A ++ G D G +Y I G + GSGS
Sbjct: 129 MLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGS 174
>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2
Length = 277
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ ++
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQ 128
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
+++ Y+ + A ++ G D G +Y I G + GSGS
Sbjct: 129 MLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGS 174
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1
Length = 277
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ ++
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQ 128
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
+++ Y+ + A ++ G D G +Y I G + GSGS
Sbjct: 129 MLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGS 174
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1
SV=1
Length = 277
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ ++
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQ 128
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
+++ Y+ + A ++ G D G +Y I G + GSGS
Sbjct: 129 MLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGS 174
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ KL R++ I+C +G+AADT+A++ + N++L + EP V S ++ ++
Sbjct: 55 VADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQ 114
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGG 95
++ Y+ + A +I AG D G ++ I G
Sbjct: 115 HLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAHG 146
>sp|Q4KM35|PSB10_RAT Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2
SV=1
Length = 273
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+ VA++ +K+ + IYCC +G AADT+ + + ++L + G EP V + ++
Sbjct: 63 SVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRIL 122
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 108
++ ++ Y+ + A +I G D G Q+Y + G R GSG
Sbjct: 123 RQTLFRYQGHVGASLIVGGVD-LNGPQLYSVHPHGSYSRLPFTALGSG 169
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+ VA++ +K+ + IYCC +G AAD + + V+ ++L + G EP V + ++
Sbjct: 63 SVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRIL 122
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 108
++ ++ Y+ + A +I G D G Q+Y + G R GSG
Sbjct: 123 RQTLFRYQGHVGASLIVGGVDL-TGPQLYGVHPHGSYSRLPFTALGSG 169
>sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1
Length = 273
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+ VA++ +K+ + IYCC +G AADT+ + + ++L + G EP V + ++
Sbjct: 63 SVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRIL 122
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 108
++ ++ Y+ + A ++ G D G Q+Y + G R GSG
Sbjct: 123 RQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSYSRLPFTALGSG 169
>sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1
Length = 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
+A++ KL ++ NI+C +G+AADT+ ++ +S N++L + +P V + + ++
Sbjct: 61 IADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQ 120
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
++ Y+ + A ++ G+D KG ++ I G + GSGS
Sbjct: 121 HLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAHGSSDKLPYVALGSGS 166
>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1
Length = 273
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+ VA+++ +K+ + IYCC +G AAD + + + N++L + G E V + ++
Sbjct: 63 SVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRML 122
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 108
++ ++ Y+ + A +I G D G Q+Y + G R GSG
Sbjct: 123 RQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHGSYSRLPFTALGSG 169
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++A+R A K+ ++TD I +GS D Q ++ + +L + EEP V + A L
Sbjct: 34 FIASRRAKKIYKITDRIAMTTAGSVGDAQFLARLIKVETNLYTIRKEEEPTVKAVATLVS 93
Query: 62 ELVYSYR-DSLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
L+ S R ++ G D K G ++Y I P+GG + + GSGS
Sbjct: 94 NLLNSVRYFPYLVQLLIGGVD-KTGAKIYSIDPIGGAIEEIDIVATGSGS 142
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
Y+++ +K+ + ++ SG AAD Q ++ L + GE V + +KL
Sbjct: 97 YISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLS 156
Query: 62 ELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+VY YR L+ G + GWD KKG +Y + G + M GSGSTY
Sbjct: 157 NMVYQYRGMDLSMGSMICGWD-KKGPGLYYVDQNGTRLSGNMFSTGSGSTY 206
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ A KL ++ D I +GS D QAI ++ L +M G + A L
Sbjct: 32 VADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLTAEAKLYKMRTGRNIPPLACATLLSN 91
Query: 63 LVYSYRD-SLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
+++S R II G+D +G +++ + PLGGM + GSGS
Sbjct: 92 ILHSSRVFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGS 140
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ A KL ++ D I +GS D QAI ++ L +M G+ + A L
Sbjct: 32 VADKEAKKLYKIDDYIALTIAGSVGDAQAIVRLLTAEAKLYKMRTGKNISPLACATLLSN 91
Query: 63 LVYSYR-DSLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
+++S R +I G+D +G +++ + PLGGM + GSGS
Sbjct: 92 ILHSNRYFPFLTQLIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGS 140
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++ A KL ++ D I +GS D QAI + L +M G + A L
Sbjct: 32 VADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSN 91
Query: 63 LVYSYRD-SLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
+++S R II G+D +G +++ + PLGGM + GSGS
Sbjct: 92 ILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGS 140
>sp|D3E0A3|PSB_METRM Proteasome subunit beta OS=Methanobrevibacter ruminantium (strain
ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=psmB PE=3
SV=1
Length = 207
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
VA++VA+K+ ++ ++I +GS AD Q + +S L R+ G++ + + A +
Sbjct: 35 VAHKVAEKIFKIDNHIAATIAGSVADAQTLMKVISAETSLYRLRNGKDISLEAAAAVSSN 94
Query: 63 LVYS---YRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+++S Y +L G+ G +Y + G +++ GSGST+
Sbjct: 95 ILHSSPAYVQTLIGGV------DDTGASIYSLDAAGGMIKDTFISTGSGSTF 140
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++A+R A K+ R+ D + +G+ D Q ++ +S + L + E+P V + A L
Sbjct: 37 FIASRRAKKIYRIADRVAMTTAGAVGDAQFLARLISVEIKLYEIRKEEKPTVKAIATLLS 96
Query: 62 ELVYSYR-DSLTAGIICAGWDRKKGGQVYCIP-LGGMLMRQKMAMGGSGS 109
++ S R ++ G D K+G +Y I LGG + + GSGS
Sbjct: 97 NILNSVRWFPYFVQLLVGGVD-KRGPSIYSIDLLGGAIEEIDIVATGSGS 145
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
YVA+R K+ +T + +G AAD + L + E V + +K+
Sbjct: 86 PYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKIL 145
Query: 61 QELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+VYSY+ L+ G + GWD K G Q+Y + G + + GSGSTY
Sbjct: 146 ANIVYSYKGYGLSMGTMITGWD-KTGPQLYYVDNDGTRLHGQRFSCGSGSTY 196
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+VA++ K+ + + +G AAD Q ++ L + E V + +K+
Sbjct: 100 WVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILS 159
Query: 62 ELVYSYRDS-LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
LVY Y+ + L+ G + G+ RK+G +Y + G ++ + GSG T+
Sbjct: 160 NLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTF 210
>sp|A1RTI7|PSB2_PYRIL Proteasome subunit beta 2 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB2 PE=3 SV=1
Length = 200
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS-----YNLDLQRMELGEEPLVYSG 56
Y+A++ +K+ ++ D++ SG AD Q++ F++ Y ++ +R + Y
Sbjct: 26 YIAHKQGEKIWKIDDHVAATMSGGVADLQSLLSFLTLRAREYKIEYKRPIPIRALVNYVS 85
Query: 57 AKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
LF Y Y L II G DR++G +Y + G + R++ GSGS Y
Sbjct: 86 LILFYSRPYIY---LVHSII-GGVDREEGAVLYMVDWLGTVTRERYIATGSGSPY 136
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++A++ A K+ ++ D + +GS D Q ++ + +L + +P V + A L
Sbjct: 36 FIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTS 95
Query: 62 ELVYSYR-DSLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
L+ SYR ++ G D +G +Y I P+GG + + + GSGS
Sbjct: 96 NLLNSYRYFPYLVQLLIGGID-SEGKSIYSIDPIGGAIEEKDIVATGSGS 144
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62
+A++ A KL ++ D I +GS D QAI + L +M G+ + A L
Sbjct: 32 IADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRALIAEARLYKMRTGKNISPRACATLLSN 91
Query: 63 LVYSYRD-SLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
+++S R II G+D G +++ + PLGGM + GSGS
Sbjct: 92 ILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPLGGMNEEKTFTSTGSGS 140
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+Y+A +K+ + + SG AAD Q ++ L + GE V + +KL
Sbjct: 96 SYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLL 155
Query: 61 QELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++ YR L+ G + GWD KKG +Y + G + +M GSG+TY
Sbjct: 156 SNMMLQYRGMGLSMGSMICGWD-KKGPGLYYVDDNGTRLSGQMFSTGSGNTY 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,283,524
Number of Sequences: 539616
Number of extensions: 1541503
Number of successful extensions: 3040
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2907
Number of HSP's gapped (non-prelim): 155
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)