Query psy5101
Match_columns 111
No_of_seqs 107 out of 1026
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:20:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03761 proteasome_beta_type_5 100.0 5.9E-32 1.3E-36 185.6 13.1 108 2-110 25-133 (188)
2 cd03758 proteasome_beta_type_2 100.0 7.7E-32 1.7E-36 185.7 13.0 110 2-111 26-138 (193)
3 cd03759 proteasome_beta_type_3 100.0 1E-31 2.2E-36 185.3 12.2 108 3-110 29-138 (195)
4 cd03757 proteasome_beta_type_1 100.0 2.9E-31 6.2E-36 185.2 12.6 109 2-110 33-142 (212)
5 COG0638 PRE1 20S proteasome, a 100.0 4E-31 8.8E-36 187.2 13.3 109 2-111 55-166 (236)
6 cd03762 proteasome_beta_type_6 100.0 4.8E-31 1E-35 180.8 12.7 109 2-110 25-133 (188)
7 cd03760 proteasome_beta_type_4 100.0 7.3E-31 1.6E-35 181.3 12.6 110 2-111 27-140 (197)
8 cd03755 proteasome_alpha_type_ 100.0 1.8E-30 4E-35 180.5 13.2 109 2-110 51-164 (207)
9 cd03763 proteasome_beta_type_7 100.0 4.1E-30 8.9E-35 176.4 12.9 108 2-110 25-132 (189)
10 TIGR03634 arc_protsome_B prote 100.0 5.8E-30 1.3E-34 174.9 13.1 109 2-111 26-135 (185)
11 cd03754 proteasome_alpha_type_ 100.0 8.1E-30 1.8E-34 178.3 13.6 109 3-111 54-167 (215)
12 cd03764 proteasome_beta_archea 100.0 8.8E-30 1.9E-34 174.5 12.9 108 2-110 25-133 (188)
13 cd03752 proteasome_alpha_type_ 100.0 1.2E-29 2.7E-34 177.0 13.6 109 3-111 55-168 (213)
14 cd03750 proteasome_alpha_type_ 100.0 1.1E-29 2.5E-34 178.7 13.1 109 2-111 51-164 (227)
15 cd03751 proteasome_alpha_type_ 100.0 1.4E-29 3E-34 176.9 13.1 108 3-111 55-167 (212)
16 TIGR03690 20S_bact_beta protea 100.0 1.5E-29 3.3E-34 177.3 12.7 109 2-110 27-141 (219)
17 cd03749 proteasome_alpha_type_ 100.0 2.1E-29 4.5E-34 175.7 13.3 106 5-111 52-162 (211)
18 PTZ00488 Proteasome subunit be 100.0 2.1E-29 4.6E-34 179.4 12.6 108 2-110 64-172 (247)
19 cd01912 proteasome_beta protea 100.0 3.8E-29 8.3E-34 171.1 13.1 107 4-110 27-134 (189)
20 cd03765 proteasome_beta_bacter 100.0 7.4E-29 1.6E-33 175.5 14.0 107 3-110 25-151 (236)
21 cd03753 proteasome_alpha_type_ 100.0 6E-29 1.3E-33 173.5 13.2 109 2-111 51-169 (213)
22 cd01906 proteasome_protease_Hs 100.0 7.7E-29 1.7E-33 168.3 13.4 108 4-111 27-137 (182)
23 cd01911 proteasome_alpha prote 100.0 1E-28 2.2E-33 171.9 12.4 110 2-111 51-165 (209)
24 cd03756 proteasome_alpha_arche 100.0 2.4E-28 5.1E-33 170.3 13.5 109 2-111 52-165 (211)
25 TIGR03633 arc_protsome_A prote 100.0 2.3E-28 5E-33 171.7 13.0 109 2-111 53-166 (224)
26 PRK03996 proteasome subunit al 100.0 5.4E-28 1.2E-32 171.4 13.0 108 2-110 60-172 (241)
27 PTZ00246 proteasome subunit al 100.0 9.4E-28 2E-32 171.4 12.9 108 3-110 57-169 (253)
28 KOG0175|consensus 100.0 2.6E-28 5.5E-33 170.9 9.5 110 1-111 95-205 (285)
29 KOG0176|consensus 100.0 3E-28 6.6E-33 165.4 9.1 105 4-109 60-174 (241)
30 KOG0179|consensus 99.9 3E-27 6.4E-32 161.5 10.2 109 3-111 55-164 (235)
31 PF00227 Proteasome: Proteasom 99.9 1.7E-26 3.6E-31 157.7 11.9 106 5-110 32-144 (190)
32 TIGR03691 20S_bact_alpha prote 99.9 2.1E-26 4.6E-31 162.4 12.4 105 6-110 48-159 (228)
33 KOG0174|consensus 99.9 1.2E-26 2.7E-31 157.0 9.4 111 1-111 43-153 (224)
34 KOG0177|consensus 99.9 9.6E-27 2.1E-31 156.8 7.8 110 2-111 26-138 (200)
35 KOG0183|consensus 99.9 2.8E-24 6.2E-29 147.5 6.4 106 4-109 56-166 (249)
36 KOG0181|consensus 99.9 3.6E-24 7.9E-29 145.3 6.2 106 4-110 58-168 (233)
37 KOG0173|consensus 99.9 9.2E-24 2E-28 147.7 7.1 108 2-110 62-169 (271)
38 KOG0178|consensus 99.9 3.1E-23 6.7E-28 142.2 9.4 104 6-109 60-168 (249)
39 cd01913 protease_HslV Protease 99.9 5.7E-23 1.2E-27 139.0 10.0 101 1-111 24-128 (171)
40 KOG0184|consensus 99.9 1.2E-22 2.7E-27 140.1 10.5 104 5-109 61-169 (254)
41 KOG0863|consensus 99.9 8.3E-23 1.8E-27 141.6 9.7 103 6-109 58-165 (264)
42 KOG0180|consensus 99.9 1.2E-22 2.6E-27 135.6 9.0 106 4-109 35-142 (204)
43 TIGR03692 ATP_dep_HslV ATP-dep 99.9 1.4E-22 3.1E-27 137.1 9.1 101 1-111 24-128 (171)
44 cd01901 Ntn_hydrolase The Ntn 99.9 1.7E-21 3.8E-26 128.3 13.2 105 5-110 28-135 (164)
45 PRK05456 ATP-dependent proteas 99.9 6.1E-22 1.3E-26 134.4 10.2 101 1-111 25-129 (172)
46 KOG0182|consensus 99.9 9.4E-22 2E-26 134.9 9.7 106 2-107 60-170 (246)
47 KOG0185|consensus 99.8 2.4E-18 5.2E-23 119.6 7.3 104 6-109 70-177 (256)
48 COG5405 HslV ATP-dependent pro 98.5 1.2E-07 2.6E-12 63.3 4.1 100 3-111 30-132 (178)
49 COG3484 Predicted proteasome-t 96.1 0.083 1.8E-06 37.1 8.6 83 17-99 44-138 (255)
50 PF04539 Sigma70_r3: Sigma-70 66.1 14 0.00031 21.0 3.8 28 33-60 3-30 (78)
51 COG4537 ComGC Competence prote 60.1 21 0.00045 22.4 3.7 28 29-56 49-77 (107)
52 PHA02087 hypothetical protein 55.9 12 0.00026 21.7 2.1 34 78-111 37-70 (83)
53 PF14593 PH_3: PH domain; PDB: 55.3 14 0.0003 23.1 2.5 16 84-99 36-51 (104)
54 PF12385 Peptidase_C70: Papain 51.1 76 0.0016 21.6 5.6 22 74-96 126-147 (166)
55 PF10632 He_PIG_assoc: He_PIG 48.9 21 0.00046 17.0 2.0 23 73-96 4-26 (29)
56 PF01242 PTPS: 6-pyruvoyl tetr 48.8 34 0.00073 21.5 3.6 46 23-68 43-98 (123)
57 PRK07105 pyridoxamine kinase; 46.1 20 0.00044 25.7 2.5 28 7-34 3-30 (284)
58 PF13645 YkuD_2: L,D-transpept 44.6 1E+02 0.0022 21.2 6.7 61 49-109 9-73 (176)
59 COG5469 Predicted metal-bindin 43.1 6.8 0.00015 25.8 -0.3 93 5-97 6-117 (143)
60 PF01726 LexA_DNA_bind: LexA D 43.0 56 0.0012 18.4 3.5 22 39-60 14-35 (65)
61 COG0279 GmhA Phosphoheptose is 41.7 29 0.00063 23.8 2.5 24 18-41 45-68 (176)
62 cd01262 PH_PDK1 3-Phosphoinosi 41.1 20 0.00044 21.8 1.6 15 84-98 24-38 (89)
63 COG2096 cob(I)alamin adenosylt 40.3 77 0.0017 22.0 4.4 39 29-67 125-163 (184)
64 KOG1593|consensus 39.1 1.1E+02 0.0023 22.8 5.2 48 20-68 254-301 (349)
65 TIGR00436 era GTP-binding prot 39.0 92 0.002 22.2 5.0 80 29-109 152-241 (270)
66 TIGR00246 tRNA_RlmH_YbeA rRNA 37.3 61 0.0013 21.6 3.5 33 46-81 73-105 (153)
67 TIGR00090 iojap_ybeB iojap-lik 37.0 87 0.0019 19.1 4.0 35 8-42 22-56 (99)
68 TIGR00636 PduO_Nterm ATP:cob(I 36.9 87 0.0019 21.3 4.3 55 13-67 98-155 (171)
69 PF01923 Cob_adeno_trans: Coba 36.1 80 0.0017 21.0 4.0 38 29-66 120-157 (163)
70 COG4990 Uncharacterized protei 35.8 28 0.00061 24.2 1.8 20 74-96 150-169 (195)
71 KOG3652|consensus 33.8 88 0.0019 26.4 4.4 68 22-96 192-260 (1215)
72 COG1647 Esterase/lipase [Gener 33.8 33 0.00072 24.7 1.9 19 21-39 23-41 (243)
73 KOG4269|consensus 33.1 70 0.0015 27.7 3.9 46 19-64 941-986 (1112)
74 cd05564 PTS_IIB_chitobiose_lic 32.7 63 0.0014 19.5 2.9 26 18-45 3-28 (96)
75 TIGR03367 queuosine_QueD queuo 32.6 62 0.0013 19.4 2.8 43 23-65 43-91 (92)
76 COG0017 AsnS Aspartyl/asparagi 31.8 1E+02 0.0022 24.3 4.4 41 56-96 140-180 (435)
77 PF00392 GntR: Bacterial regul 30.6 62 0.0013 17.6 2.4 31 30-60 3-34 (64)
78 smart00345 HTH_GNTR helix_turn 30.3 53 0.0012 17.0 2.1 28 33-60 2-30 (60)
79 KOG2449|consensus 29.4 1.8E+02 0.0039 19.5 4.9 72 25-97 4-80 (157)
80 PF02590 SPOUT_MTase: Predicte 29.2 79 0.0017 21.1 3.1 34 46-81 75-108 (155)
81 KOG3905|consensus 28.8 1.7E+02 0.0037 22.7 5.0 55 34-88 250-320 (473)
82 COG4728 Uncharacterized protei 28.2 59 0.0013 20.5 2.1 39 10-48 9-50 (124)
83 KOG1559|consensus 28.0 2.3E+02 0.005 20.9 5.4 52 26-82 283-335 (340)
84 PRK00103 rRNA large subunit me 26.2 1.4E+02 0.0031 19.9 3.9 34 46-81 75-108 (157)
85 cd07377 WHTH_GntR Winged helix 26.0 1.1E+02 0.0024 16.0 3.2 31 30-60 4-35 (66)
86 PRK11538 ribosome-associated p 25.7 1.7E+02 0.0037 18.1 3.9 35 7-41 26-60 (105)
87 PF13529 Peptidase_C39_2: Pept 25.3 71 0.0015 19.5 2.3 17 75-93 127-143 (144)
88 PF14134 DUF4301: Domain of un 24.6 2.9E+02 0.0063 22.3 5.8 25 68-97 374-403 (513)
89 PRK15494 era GTPase Era; Provi 24.4 2.4E+02 0.0052 21.0 5.2 80 29-109 204-293 (339)
90 PF09778 Guanylate_cyc_2: Guan 24.3 95 0.0021 22.0 2.9 24 72-96 161-184 (212)
91 TIGR03112 6_pyr_pter_rel 6-pyr 24.3 1.9E+02 0.0041 18.1 5.8 45 24-69 39-91 (113)
92 PF05320 Pox_RNA_Pol_19: Poxvi 24.0 1.4E+02 0.0029 20.3 3.4 53 22-74 51-106 (167)
93 PF06018 CodY: CodY GAF-like d 23.9 1.9E+02 0.0041 19.9 4.2 35 32-66 2-36 (177)
94 PF05593 RHS_repeat: RHS Repea 23.7 99 0.0022 15.1 2.2 10 89-98 20-29 (38)
95 PF14515 HOASN: Haem-oxygenase 23.6 1.3E+02 0.0027 18.1 2.9 42 22-66 47-88 (93)
96 KOG0572|consensus 22.8 3.5E+02 0.0075 21.4 5.7 19 18-36 100-118 (474)
97 TIGR03342 dsrC_tusE_dsvC sulfu 22.4 2.1E+02 0.0046 17.9 4.7 36 25-64 38-73 (108)
98 PF04315 DUF462: Protein of un 22.4 2.5E+02 0.0054 19.1 4.4 39 23-62 112-150 (164)
99 COG0276 HemH Protoheme ferro-l 22.3 2E+02 0.0044 21.6 4.4 33 16-48 258-290 (320)
100 PRK11508 sulfur transfer prote 22.3 2.1E+02 0.0046 18.0 4.7 36 25-64 39-74 (109)
101 cd01173 pyridoxal_pyridoxamine 22.1 78 0.0017 22.1 2.2 25 10-34 1-25 (254)
102 TIGR01643 YD_repeat_2x YD repe 21.9 1.1E+02 0.0023 14.9 2.2 18 81-98 12-29 (42)
103 TIGR00853 pts-lac PTS system, 21.9 1.2E+02 0.0025 18.3 2.6 25 18-44 7-31 (95)
104 cd00470 PTPS 6-pyruvoyl tetrah 21.8 2E+02 0.0043 18.5 3.9 46 23-68 57-112 (135)
105 COG1164 Oligoendopeptidase F [ 21.7 2.8E+02 0.006 22.7 5.4 51 14-64 366-423 (598)
106 cd04385 RhoGAP_ARAP RhoGAP_ARA 20.9 1.8E+02 0.0039 19.5 3.7 49 21-70 38-86 (184)
107 PRK14566 triosephosphate isome 20.6 1.8E+02 0.004 21.2 3.8 49 25-80 187-243 (260)
108 PF01171 ATP_bind_3: PP-loop f 20.6 2.7E+02 0.0058 18.4 6.1 55 17-72 1-62 (182)
109 COG1725 Predicted transcriptio 20.5 1.6E+02 0.0034 19.1 3.1 31 30-60 14-45 (125)
110 PRK12427 flagellar biosynthesi 20.3 2.9E+02 0.0062 19.3 4.7 32 29-60 96-127 (231)
111 PRK11414 colanic acid/biofilm 20.1 1.5E+02 0.0033 20.2 3.2 32 29-60 13-44 (221)
112 PF00620 RhoGAP: RhoGAP domain 20.1 2.2E+02 0.0047 17.9 3.8 46 23-70 25-70 (151)
No 1
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-32 Score=185.56 Aligned_cols=108 Identities=26% Similarity=0.478 Sum_probs=103.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+|||+|++|++|+++|..+|++.+++++|.++++|+.+++++|+++.+|+++++++|.+|+ ||++++|||||
T Consensus 25 ~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~li~G~ 104 (188)
T cd03761 25 YIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGW 104 (188)
T ss_pred EEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ .||+||++||+|++.+++++++|+|+.
T Consensus 105 D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~ 133 (188)
T cd03761 105 DK-TGPGLYYVDSDGTRLKGDLFSVGSGST 133 (188)
T ss_pred eC-CCCEEEEEcCCceEEEcCeEEEcccHH
Confidence 96 799999999999999999999999985
No 2
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=7.7e-32 Score=185.71 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=102.9
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---CCceeEEEEEe
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY---RDSLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~---~~p~~~~~lv~ 78 (111)
++.+++.+|||+|+++++|++||..||+|.+++++|.+++.|+..++++++++.+++++++++|.+ ++||++++||+
T Consensus 26 ~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~ 105 (193)
T cd03758 26 LVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLA 105 (193)
T ss_pred EEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 466789999999999999999999999999999999999999999999999999999999999654 24999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|||+++||+||++||+|++.+++++++|+|+.+
T Consensus 106 G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~ 138 (193)
T cd03758 106 GYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYF 138 (193)
T ss_pred EEcCCCCcEEEEECCCcceEECCeeEEeecHHH
Confidence 999768999999999999999999999999853
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=1e-31 Score=185.29 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=100.6
Q ss_pred cccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CceeEEEEEeeec
Q psy5101 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWD 81 (111)
Q Consensus 3 i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-~p~~~~~lv~G~D 81 (111)
+.+++.+||++|++|++|+++|..||++.+.+++|.+++.|+++++++|+++.+|++|++++|..| +||++++||||||
T Consensus 29 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D 108 (195)
T cd03759 29 TVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLD 108 (195)
T ss_pred eEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEc
Confidence 346688999999999999999999999999999999999999999999999999999999998875 4999999999999
Q ss_pred CCCCeEEEEecCCCceeeec-eEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQK-MAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~-~~~~Gsgs~ 110 (111)
+++||+||++||+|++.+.. ++++|+|+.
T Consensus 109 ~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~ 138 (195)
T cd03759 109 PDGKPFICTMDLIGCPSIPSDFVVSGTASE 138 (195)
T ss_pred CCCCEEEEEEcCCCcccccCCEEEEcccHH
Confidence 87789999999999987666 999999975
No 4
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.9e-31 Score=185.24 Aligned_cols=109 Identities=26% Similarity=0.290 Sum_probs=103.3
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|+++++|++||..||++.+++++|.++++|+++++++|+++.+|+++++++|.+|. ||++++|||||
T Consensus 33 ~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~ 112 (212)
T cd03757 33 SILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGI 112 (212)
T ss_pred EeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999998764 99999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|++++|+||.+||.|++.+++++++|+|+.
T Consensus 113 D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~ 142 (212)
T cd03757 113 DEEGKGVVYSYDPVGSYERETYSAGGSASS 142 (212)
T ss_pred cCCCCEEEEEEcCccCeeecCEEEEeecHH
Confidence 986789999999999999999999999985
No 5
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=187.20 Aligned_cols=109 Identities=27% Similarity=0.396 Sum_probs=104.8
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---CceeEEEEEe
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~---~p~~~~~lv~ 78 (111)
++.+++.+||++|+|||+|++||+.+|+|.|++++|.+++.|++.++++|+++.+++++++++|.++ |||+++++||
T Consensus 55 ~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iia 134 (236)
T COG0638 55 LIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVA 134 (236)
T ss_pred eecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEE
Confidence 5677889999999999999999999999999999999999999999999999999999999999998 4999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+|+ ++|+||.+||+|++.++++.++|+|+++
T Consensus 135 G~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~ 166 (236)
T COG0638 135 GVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQF 166 (236)
T ss_pred EEcC-CCCeEEEECCCCceeecCEEEEcCCcHH
Confidence 9999 8999999999999999999999999863
No 6
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=4.8e-31 Score=180.76 Aligned_cols=109 Identities=68% Similarity=1.185 Sum_probs=104.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+.+++++|+++.+|+++++++|.+++||++++||||+|
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ii~G~d 104 (188)
T cd03762 25 YVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWD 104 (188)
T ss_pred eEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhccccceeeEEEEEEc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+++||+||.+||.|++.+++++++|+|+.
T Consensus 105 ~~~gp~ly~~d~~G~~~~~~~~~~G~g~~ 133 (188)
T cd03762 105 EQNGGQVYSIPLGGMLIRQPFAIGGSGST 133 (188)
T ss_pred CCCCcEEEEECCCCCEEecCEEEEcccHH
Confidence 76789999999999999999999999874
No 7
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=7.3e-31 Score=181.25 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=101.6
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHHhcC---CceeEEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLD-LQRMELGEEPLVYSGAKLFQELVYSYR---DSLTAGIIC 77 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~ls~~l~~~~---~p~~~~~lv 77 (111)
++.+++.+|||+|+++++|+++|..+|++.+++++|.++. .|+.+++++|+++.+|+++++++|..+ |||++++||
T Consensus 27 ~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~ii 106 (197)
T cd03760 27 LARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVV 106 (197)
T ss_pred eeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEE
Confidence 4567889999999999999999999999999999999987 567889999999999999999998765 599999999
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
||||+++||+||++||+|++.+++++++|+|+.+
T Consensus 107 aG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~ 140 (197)
T cd03760 107 GGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYL 140 (197)
T ss_pred EEEcCCCCEEEEEEcCCccEEECCEeEEccHHHH
Confidence 9999768999999999999999999999999753
No 8
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.8e-30 Score=180.50 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=101.8
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+++.+||++|++|++|++||..+|++.+.+++|.++++|+++++++|+++.++++++++++.+ .|||++++|
T Consensus 51 ~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~i 130 (207)
T cd03755 51 LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTL 130 (207)
T ss_pred ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999655 359999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+|||+++||+||.+||+|++.+.+++++|+|+.
T Consensus 131 i~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~ 164 (207)
T cd03755 131 IVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSK 164 (207)
T ss_pred EEEEeCCCCeEEEEECCCcCEEcceEEEECCCCH
Confidence 9999987799999999999999999999999985
No 9
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=4.1e-30 Score=176.44 Aligned_cols=108 Identities=31% Similarity=0.615 Sum_probs=103.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+|||+|+++++|+++|..+|++.+.+++|.+++.|+.+++++++++.+|+++++.+|.++.|++|++||||||
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~p~~v~~ivaG~d 104 (189)
T cd03763 25 IVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVD 104 (189)
T ss_pred eEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCccceeEEEEeEc
Confidence 45567899999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+ +||+||.+||.|++.+++++++|+|+.
T Consensus 105 ~-~g~~ly~~d~~G~~~~~~~~a~G~~~~ 132 (189)
T cd03763 105 Y-TGPHLYSIYPHGSTDKLPFVTMGSGSL 132 (189)
T ss_pred C-CCCEEEEECCCCCEEecCEEEEcCCHH
Confidence 7 689999999999999999999999985
No 10
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.97 E-value=5.8e-30 Score=174.95 Aligned_cols=109 Identities=24% Similarity=0.375 Sum_probs=102.9
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+..++++|+++.+|+++++++|.++. |+++++|||||
T Consensus 26 ~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~ 105 (185)
T TIGR03634 26 FVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGV 105 (185)
T ss_pred EEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999998864 99999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+ +||+||.+||.|++.+++++++|+|+.+
T Consensus 106 d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~ 135 (185)
T TIGR03634 106 DE-EGPHLYSLDPAGGIIEDDYTATGSGSPV 135 (185)
T ss_pred eC-CCCEEEEECCCCCeEECCEEEEcCcHHH
Confidence 97 6899999999999999999999999753
No 11
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=8.1e-30 Score=178.28 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=100.4
Q ss_pred cccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEE
Q psy5101 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIIC 77 (111)
Q Consensus 3 i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv 77 (111)
+..++.+||++|+++++|++||+.+|++.+.+++|.++.+|+++++++|+++.+|++++++++.+ .|||++++||
T Consensus 54 i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii 133 (215)
T cd03754 54 IDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMIL 133 (215)
T ss_pred cCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEE
Confidence 44568899999999999999999999999999999999999999999999999999999975432 3599999999
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+|||+++||+||.+||+|++.+++++++|+|+.+
T Consensus 134 ~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~ 167 (215)
T cd03754 134 IGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQE 167 (215)
T ss_pred EEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHH
Confidence 9999868999999999999999999999999853
No 12
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=8.8e-30 Score=174.51 Aligned_cols=108 Identities=21% Similarity=0.368 Sum_probs=102.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|+++++++++|..+|++.+.+++|.+++.|+..++++++++.+++++++++|.++. ||+|++|||||
T Consensus 25 ~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~lvaG~ 104 (188)
T cd03764 25 FIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGV 104 (188)
T ss_pred EEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999864 99999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ ++|+||.+||.|++.+++++++|+|+.
T Consensus 105 d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~ 133 (188)
T cd03764 105 DE-EGPHLYSLDPLGSIIEDKYTATGSGSP 133 (188)
T ss_pred eC-CCCEEEEECCCCCEEEcCEEEEcCcHH
Confidence 98 789999999999999999999999975
No 13
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.2e-29 Score=177.02 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=101.4
Q ss_pred cccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEE
Q psy5101 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIIC 77 (111)
Q Consensus 3 i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv 77 (111)
+.+++.+||++|+++++|++||..+|++.+.+++|.++.+|+++++++|+++.+|++++..++.+ +|||++++||
T Consensus 55 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li 134 (213)
T cd03752 55 DQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLY 134 (213)
T ss_pred CCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999987554 4599999999
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+|||++.||+||.+||+|++.+.+++++|+|+.+
T Consensus 135 ~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~ 168 (213)
T cd03752 135 AGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQA 168 (213)
T ss_pred EEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHH
Confidence 9999767999999999999999999999999863
No 14
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.1e-29 Score=178.71 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=101.9
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+++.+||++|++|++|+++|..+|++.+++++|.++++|+.+++++|+++.+|++|++.++.+ .||+++++|
T Consensus 51 l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~l 130 (227)
T cd03750 51 LIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLL 130 (227)
T ss_pred ccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEE
Confidence 456778999999999999999999999999999999999999999999999999999999999654 359999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+|||+ .||+||.+||+|++.+++++++|+|+.+
T Consensus 131 i~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~ 164 (227)
T cd03750 131 IAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSN 164 (227)
T ss_pred EEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHH
Confidence 999997 6999999999999999999999999853
No 15
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.4e-29 Score=176.86 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=100.3
Q ss_pred cccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEE
Q psy5101 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIIC 77 (111)
Q Consensus 3 i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv 77 (111)
+..++.+||++|++|++|+++|+.+|++.+.+++|.++++|+.+++++|+++.++++|++.++.+ +|||++++||
T Consensus 55 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li 134 (212)
T cd03751 55 YEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLL 134 (212)
T ss_pred cCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999977653 4699999999
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+|||+ +||+||.+||+|++.+++++++|+|+.+
T Consensus 135 ~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~ 167 (212)
T cd03751 135 GGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQA 167 (212)
T ss_pred EEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHH
Confidence 99996 6899999999999999999999999863
No 16
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.97 E-value=1.5e-29 Score=177.32 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=100.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc----CCceeEEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----RDSLTAGIIC 77 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~----~~p~~~~~lv 77 (111)
++.+++.+||++|++|++|+++|..+|++.+.+++|.++++|+++++++|+++.+|++|++++|.+ .|||++++||
T Consensus 27 ~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~ii 106 (219)
T TIGR03690 27 MIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLL 106 (219)
T ss_pred EEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999765 4699999999
Q ss_pred eeecCC-CCeEEEEecCCCc-eeeeceEEeecCCC
Q psy5101 78 AGWDRK-KGGQVYCIPLGGM-LMRQKMAMGGSGST 110 (111)
Q Consensus 78 ~G~D~~-~gp~Ly~vd~~G~-~~~~~~~~~Gsgs~ 110 (111)
||||++ ++|+||++||+|+ +.+.+++++|+|+.
T Consensus 107 aG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~ 141 (219)
T TIGR03690 107 AGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSV 141 (219)
T ss_pred EEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHH
Confidence 999974 6899999999995 66778999999975
No 17
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.1e-29 Score=175.73 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=98.9
Q ss_pred cCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEee
Q psy5101 5 NRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAG 79 (111)
Q Consensus 5 ~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G 79 (111)
.++.+||++|+++++|++||..+|++.+.+++|.++.+|+++++++|+++.+|+++++.++.+ +|||+|++||+|
T Consensus 52 ~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G 131 (211)
T cd03749 52 SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAG 131 (211)
T ss_pred CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEE
Confidence 356799999999999999999999999999999999999999999999999999999988653 459999999999
Q ss_pred ecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 80 WDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 80 ~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
||+ .||+||++||+|++.+++++++|+|+.+
T Consensus 132 ~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~ 162 (211)
T cd03749 132 YDE-SGPHLFQTCPSGNYFEYKATSIGARSQS 162 (211)
T ss_pred EcC-CCCeEEEECCCcCEeeeeEEEECCCcHH
Confidence 997 6899999999999999999999999853
No 18
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.96 E-value=2.1e-29 Score=179.43 Aligned_cols=108 Identities=26% Similarity=0.473 Sum_probs=102.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|++|++|+++|..+|++.+++++|.++++|+++++++|+++.+|++|++++|.+|. |+.+++|||||
T Consensus 64 li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~ 143 (247)
T PTZ00488 64 YIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGW 143 (247)
T ss_pred EEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999975 67888999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ .||+||++||+|++.+.+++++|+|+.
T Consensus 144 D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~ 172 (247)
T PTZ00488 144 DK-KGPGLFYVDNDGTRLHGNMFSCGSGST 172 (247)
T ss_pred eC-CCCEEEEEcCCcceeecCCEEEccCHH
Confidence 96 689999999999999999999999975
No 19
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=3.8e-29 Score=171.10 Aligned_cols=107 Identities=36% Similarity=0.530 Sum_probs=102.9
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeeecC
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDR 82 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~D~ 82 (111)
..++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+++++++++|.+++ ||++++||||+|+
T Consensus 27 ~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~ 106 (189)
T cd01912 27 ASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDK 106 (189)
T ss_pred EcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEcC
Confidence 477899999999999999999999999999999999999999999999999999999999999987 9999999999998
Q ss_pred CCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 83 KKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 83 ~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+++|+||.+||.|++.+.+++++|+|+.
T Consensus 107 ~~~~~l~~id~~G~~~~~~~~a~G~~~~ 134 (189)
T cd01912 107 GGGPFLYYVDPLGSLIEAPFVATGSGSK 134 (189)
T ss_pred CCCeEEEEECCCCCeEecCEEEEcccHH
Confidence 7799999999999999999999999875
No 20
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=7.4e-29 Score=175.51 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=96.6
Q ss_pred cccCCCCceEEec----CcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHhc----------
Q psy5101 3 VANRVADKLTRVT----DNIYCCRSGSAADTQAISDFVSYNLDLQRMELGE-EPLVYSGAKLFQELVYSY---------- 67 (111)
Q Consensus 3 i~~~~~~Ki~~i~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-~~~~~~~a~~ls~~l~~~---------- 67 (111)
+..++.+||++|+ +||+|++||..||++.+++++|.++++|++++++ +|+++.+|+++++++++.
T Consensus 25 ~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~ 104 (236)
T cd03765 25 DNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKK 104 (236)
T ss_pred ccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 3344789999998 9999999999999999999999999999999999 899999999999987651
Q ss_pred -CCceeEEEEEeeecCCCCeEEEEecCCCceeee----ceEEeecCCC
Q psy5101 68 -RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ----KMAMGGSGST 110 (111)
Q Consensus 68 -~~p~~~~~lv~G~D~~~gp~Ly~vd~~G~~~~~----~~~~~Gsgs~ 110 (111)
.|||+|++||+|||++.||+||++||+|++.++ +|+++|+ +.
T Consensus 105 ~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~ 151 (236)
T cd03765 105 AGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TK 151 (236)
T ss_pred CCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-ch
Confidence 479999999999997689999999999999887 6789995 44
No 21
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=6e-29 Score=173.50 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=101.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc----------CCce
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----------RDSL 71 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~----------~~p~ 71 (111)
++..++.+||++|+++++|+++|..+|++.+.+.+|.++++|+.+++++|+++.+++++++++|.+ .|||
T Consensus 51 ~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~ 130 (213)
T cd03753 51 LMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPF 130 (213)
T ss_pred CcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccc
Confidence 445678899999999999999999999999999999999999999999999999999999999764 2699
Q ss_pred eEEEEEeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 72 TAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 72 ~~~~lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
++++||+|||+ +||+||.+||.|++.+++++++|+|+.+
T Consensus 131 ~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~ 169 (213)
T cd03753 131 GVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEG 169 (213)
T ss_pred eEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHH
Confidence 99999999997 7899999999999999999999999863
No 22
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.96 E-value=7.7e-29 Score=168.26 Aligned_cols=108 Identities=32% Similarity=0.510 Sum_probs=103.1
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---CceeEEEEEeee
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICAGW 80 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~---~p~~~~~lv~G~ 80 (111)
..++.+|||+|+++++|+++|..+|++.+.+.++.++..|+..++++++++.+++++++.+|.++ +|+++++||+|+
T Consensus 27 ~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~ 106 (182)
T cd01906 27 ASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGV 106 (182)
T ss_pred cCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999987 699999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|++++|+||.+||.|++.+.+++++|+|+.+
T Consensus 107 d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~ 137 (182)
T cd01906 107 DEEGGPQLYSVDPSGSYIEYKATAIGSGSQY 137 (182)
T ss_pred eCCCCcEEEEECCCCCEeeccEEEECCCcHH
Confidence 9867999999999999999999999999864
No 23
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.96 E-value=1e-28 Score=171.88 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=102.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+++.+||++|+++++|+++|..+|++.+.+.++.++.+|+.+++++|+++.+|++++++++.+ .||+++++|
T Consensus 51 ~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~i 130 (209)
T cd01911 51 LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLL 130 (209)
T ss_pred ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEE
Confidence 455678999999999999999999999999999999999999999999999999999999998644 349999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+|||+++||+||.+||.|++.+.+++++|+|+.+
T Consensus 131 v~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~ 165 (209)
T cd01911 131 IAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQE 165 (209)
T ss_pred EEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHH
Confidence 99999867999999999999999999999999853
No 24
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=2.4e-28 Score=170.28 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=101.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+++.+||++|+++++|++||..+|++.+.++++.++++|+.+++++++++.+|+++++.++.+ .|||++++|
T Consensus 52 ~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~l 131 (211)
T cd03756 52 LVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALL 131 (211)
T ss_pred ccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEE
Confidence 455678999999999999999999999999999999999999999999999999999999998665 349999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+|||+ .+|+||.+||.|++.+.+++++|+|+.+
T Consensus 132 l~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~ 165 (211)
T cd03756 132 IAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQA 165 (211)
T ss_pred EEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHH
Confidence 999997 6899999999999999999999999853
No 25
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.96 E-value=2.3e-28 Score=171.67 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=101.6
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+++.+||++|+++++|++||..+|++.+.++++.++..|+.+++++++++.+|++++++++.+ +|||++++|
T Consensus 53 ~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~l 132 (224)
T TIGR03633 53 LVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALL 132 (224)
T ss_pred ccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEE
Confidence 455678999999999999999999999999999999999999999999999999999999998765 459999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+|+|+ ++|+||.+||.|++.+.+++++|+|+.+
T Consensus 133 l~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~ 166 (224)
T TIGR03633 133 IAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQA 166 (224)
T ss_pred EEEEeC-CcCEEEEECCCCCeecceEEEECCCCHH
Confidence 999996 7899999999999999999999999853
No 26
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.96 E-value=5.4e-28 Score=171.45 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=101.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++..++.+||++|+++++|++||..+|++.++++++.++..|+.+++++|+++.+|+++++.++.+ .|||++++|
T Consensus 60 ~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~i 139 (241)
T PRK03996 60 LIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALL 139 (241)
T ss_pred ccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEE
Confidence 345678899999999999999999999999999999999999999999999999999999998765 459999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+ .||+||.+||.|++.+.+++++|+|+.
T Consensus 140 laG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~ 172 (241)
T PRK03996 140 IAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRD 172 (241)
T ss_pred EEEEeC-CcCEEEEECCCCCeecceEEEECCCcH
Confidence 999997 689999999999999999999999985
No 27
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.95 E-value=9.4e-28 Score=171.37 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=100.4
Q ss_pred cccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEEE
Q psy5101 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIIC 77 (111)
Q Consensus 3 i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~lv 77 (111)
+.+++.+||++|+++++|+++|..+|++.+.+.+|.++..|++.++++++++.++++++..++.+. |||+|++||
T Consensus 57 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li 136 (253)
T PTZ00246 57 DPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLF 136 (253)
T ss_pred cCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999876643 599999999
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+|||+++||+||++||+|++.+.+++++|+|+.
T Consensus 137 ~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~ 169 (253)
T PTZ00246 137 AGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQ 169 (253)
T ss_pred EEEeCCCCcEEEEECCCCCEecceEEEECCCcH
Confidence 999976899999999999999999999999985
No 28
>KOG0175|consensus
Probab=99.95 E-value=2.6e-28 Score=170.94 Aligned_cols=110 Identities=29% Similarity=0.515 Sum_probs=107.5
Q ss_pred CccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEee
Q psy5101 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAG 79 (111)
Q Consensus 1 ~~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G 79 (111)
+||+++.++||.+||++..-+++|-+||||++.+.|.+++.+|++++++.|||.+++++|++++|+||. -+.++.+|||
T Consensus 95 ~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G 174 (285)
T KOG0175|consen 95 SYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAG 174 (285)
T ss_pred ceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEee
Confidence 589999999999999999999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred ecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 80 WDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 80 ~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
||+ +||.||+||..|+..+.+.+++||||+|
T Consensus 175 ~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~y 205 (285)
T KOG0175|consen 175 WDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTY 205 (285)
T ss_pred ccC-CCCceEEEcCCCCEecCceEeecCCCce
Confidence 999 8999999999999999999999999987
No 29
>KOG0176|consensus
Probab=99.95 E-value=3e-28 Score=165.43 Aligned_cols=105 Identities=25% Similarity=0.384 Sum_probs=99.0
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc----------CCceeE
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----------RDSLTA 73 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~----------~~p~~~ 73 (111)
.+...+||++|++||+|++||+.||+++++++.|.+++.|.+.|+++|+++.+.+.++++--++ +|||+|
T Consensus 60 ~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGV 139 (241)
T KOG0176|consen 60 EPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGV 139 (241)
T ss_pred CchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcce
Confidence 4568899999999999999999999999999999999999999999999999999999986443 469999
Q ss_pred EEEEeeecCCCCeEEEEecCCCceeeeceEEeecCC
Q psy5101 74 GIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109 (111)
Q Consensus 74 ~~lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs 109 (111)
++++||+|+ .||+||..||+|++.++++.++||||
T Consensus 140 alliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgs 174 (241)
T KOG0176|consen 140 ALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGS 174 (241)
T ss_pred EEEEeeccC-CCceEEEeCCCCceEEecceeccccc
Confidence 999999997 89999999999999999999999997
No 30
>KOG0179|consensus
Probab=99.95 E-value=3e-27 Score=161.55 Aligned_cols=109 Identities=27% Similarity=0.311 Sum_probs=105.5
Q ss_pred cccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeeec
Q psy5101 3 VANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWD 81 (111)
Q Consensus 3 i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~D 81 (111)
|.+|+.+|||+++|+++++.+|+.||+..|.+.++.++..|++.+++.|++..+|++||..||.+|+ ||.+..+|+|+|
T Consensus 55 I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiD 134 (235)
T KOG0179|consen 55 INSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGID 134 (235)
T ss_pred eeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeeccc
Confidence 6689999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+++.+.+|++||.|++.+..|.+.|+|+++
T Consensus 135 eeGKG~VySyDPvGsyer~~~~AgGsa~~m 164 (235)
T KOG0179|consen 135 EEGKGAVYSYDPVGSYERVTCRAGGSAASM 164 (235)
T ss_pred ccCceeEEeecCCcceeeeeeecCCcchhh
Confidence 999999999999999999999999999863
No 31
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.94 E-value=1.7e-26 Score=157.70 Aligned_cols=106 Identities=26% Similarity=0.321 Sum_probs=93.5
Q ss_pred cCC-CCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH----HHHHhc-CCceeEEEEEe
Q psy5101 5 NRV-ADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ----ELVYSY-RDSLTAGIICA 78 (111)
Q Consensus 5 ~~~-~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls----~~l~~~-~~p~~~~~lv~ 78 (111)
.++ .+||++|+++++++++|..+|++.+.++++.++..|++.++++++++.+++.++ ..++.. ++|++++++++
T Consensus 32 ~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~ 111 (190)
T PF00227_consen 32 SPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIA 111 (190)
T ss_dssp ESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEE
T ss_pred cccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceee
Confidence 444 699999999999999999999999999999999999999999999995555544 444443 56999999999
Q ss_pred eecCCCCeEEEEecCCCceeee-ceEEeecCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQ-KMAMGGSGST 110 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~-~~~~~Gsgs~ 110 (111)
|||++++|+||.+||.|++.+. ++.++|+|+.
T Consensus 112 G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~ 144 (190)
T PF00227_consen 112 GYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQ 144 (190)
T ss_dssp EEETTTEEEEEEEETTSEEEEBSSEEEESTTHH
T ss_pred eeccccccceeeeccccccccccccccchhcch
Confidence 9998677999999999999999 6999999874
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.94 E-value=2.1e-26 Score=162.40 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=96.2
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHh----cCCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEPLVYSGAKLFQELVYS----YRDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~~a~~ls~~l~~----~~~p~~~~~lv~G~ 80 (111)
++.+||++|+|||+|+++|+.+|++.+++.++.++..|++.++ .+++++.+|+++++.++. +.|||+|++||+||
T Consensus 48 ~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~ 127 (228)
T TIGR03691 48 RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEV 127 (228)
T ss_pred CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEE
Confidence 5678999999999999999999999999999999999999997 789999999999987754 45799999999999
Q ss_pred cC-CCCeEEEEecCCCceeeec-eEEeecCCC
Q psy5101 81 DR-KKGGQVYCIPLGGMLMRQK-MAMGGSGST 110 (111)
Q Consensus 81 D~-~~gp~Ly~vd~~G~~~~~~-~~~~Gsgs~ 110 (111)
|+ ++||+||.+||+|++.+++ ++++|+|+.
T Consensus 128 d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~ 159 (228)
T TIGR03691 128 GETPDQDQLYRITFDGSIVDERGFVVMGGTTE 159 (228)
T ss_pred cCCCCCCEEEEECCCCCceeccceEEECCChH
Confidence 86 5789999999999999866 899999985
No 33
>KOG0174|consensus
Probab=99.94 E-value=1.2e-26 Score=157.04 Aligned_cols=111 Identities=66% Similarity=1.121 Sum_probs=108.3
Q ss_pred CccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeee
Q psy5101 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGW 80 (111)
Q Consensus 1 ~~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~ 80 (111)
.||++|-.+||-+|+|+|+||.||.+||.|.+.+.++..+++|..++++++++...|++.+++.|.+|.-+.+++|||||
T Consensus 43 ayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGw 122 (224)
T KOG0174|consen 43 AYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYREMLSAGLIVAGW 122 (224)
T ss_pred HHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHhhhcceEEeec
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|++.|.++|.+-..|.+.+.+++..||||+|
T Consensus 123 D~~~gGqVY~iplGG~l~rq~~aIgGSGStf 153 (224)
T KOG0174|consen 123 DEKEGGQVYSIPLGGSLTRQPFAIGGSGSTF 153 (224)
T ss_pred ccccCceEEEeecCceEeecceeeccCCcee
Confidence 9999999999999999999999999999987
No 34
>KOG0177|consensus
Probab=99.94 E-value=9.6e-27 Score=156.78 Aligned_cols=110 Identities=25% Similarity=0.379 Sum_probs=104.8
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC---ceeEEEEEe
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD---SLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~---p~~~~~lv~ 78 (111)
++++.+.+|+++|+|++.|+++|.++|+.++.+++.+++++|++++|.++||+++|+++++.|..+.| ||.|++++|
T Consensus 26 ~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~Lva 105 (200)
T KOG0177|consen 26 LVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVA 105 (200)
T ss_pred EEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 46678999999999999999999999999999999999999999999999999999999999987644 999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|+|++.||.||++|..|+..+.+|++.|.|+.|
T Consensus 106 GYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f 138 (200)
T KOG0177|consen 106 GYDPEEGPELYYIDYLATLVSVPYAAHGYGSYF 138 (200)
T ss_pred ccCCCCCCceeeehhhhhcccCCcccccchhhh
Confidence 999999999999999999999999999999876
No 35
>KOG0183|consensus
Probab=99.90 E-value=2.8e-24 Score=147.51 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=100.0
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEe
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICA 78 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~ 78 (111)
..++..||..+++|++|++||+.||++-+++++|-+|+.|++....+++++.++++|+.+-+.| +|||+++++|+
T Consensus 56 ~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~ 135 (249)
T KOG0183|consen 56 DERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIG 135 (249)
T ss_pred hhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999998876 46999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs 109 (111)
|||+++.|+||..||+|.+.++.+.++|-+|
T Consensus 136 GfD~~g~p~lyqtePsG~f~ewka~aiGr~s 166 (249)
T KOG0183|consen 136 GFDPDGTPRLYQTEPSGIFSEWKANAIGRSS 166 (249)
T ss_pred eeCCCCCeeeEeeCCCcchhhhhcccccccc
Confidence 9999888999999999999999999999775
No 36
>KOG0181|consensus
Probab=99.90 E-value=3.6e-24 Score=145.26 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=99.7
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEEEe
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICA 78 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~lv~ 78 (111)
.....+|+++|+++|+|..||+.+|.+.+++..|+.++.|...|+++||+..+++.++..++.|. |||++++++|
T Consensus 58 ~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvsllia 137 (233)
T KOG0181|consen 58 DEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIA 137 (233)
T ss_pred hhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999875 4999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||+ ++|.||.+||+|+++.++.++.|.+..
T Consensus 138 G~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v 168 (233)
T KOG0181|consen 138 GWDE-GGPLLYQVDPSGSYFAWKATAMGKNYV 168 (233)
T ss_pred ecCC-CceeEEEECCccceeehhhhhhccCcc
Confidence 9998 799999999999999999999998763
No 37
>KOG0173|consensus
Probab=99.90 E-value=9.2e-24 Score=147.71 Aligned_cols=108 Identities=31% Similarity=0.612 Sum_probs=105.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
+|+++|++||+.|.++|+||.+|.+||..++.+.+.+++++|+++.++++++..+-++++++|+.|....++.+|++|+|
T Consensus 62 IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD 141 (271)
T KOG0173|consen 62 IVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVD 141 (271)
T ss_pred eeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEcccc
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
. .|||||.+.|.|+....+|.+.||||.
T Consensus 142 ~-TGpHLy~i~phGStd~~Pf~alGSGsl 169 (271)
T KOG0173|consen 142 P-TGPHLYSIHPHGSTDKLPFTALGSGSL 169 (271)
T ss_pred C-CCCceEEEcCCCCcCccceeeeccchH
Confidence 9 799999999999999999999999983
No 38
>KOG0178|consensus
Probab=99.90 E-value=3.1e-23 Score=142.18 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=97.9
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G~ 80 (111)
...+||++|+|+|.|+++|+.+|+..|++.+|..++.|.+.++++||++.+++.++++-+.| +|||+|+++.+||
T Consensus 60 ~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGw 139 (249)
T KOG0178|consen 60 IPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGW 139 (249)
T ss_pred ccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeece
Confidence 35689999999999999999999999999999999999999999999999999999998765 4699999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs 109 (111)
|...|.+||.-||+|++-.|+..+.|..+
T Consensus 140 d~~~gyqLy~SdPSGny~gWka~ciG~N~ 168 (249)
T KOG0178|consen 140 DDRYGYQLYQSDPSGNYGGWKATCIGANS 168 (249)
T ss_pred ecCcceEEEecCCCCCccccceeeeccch
Confidence 99889999999999999999999998754
No 39
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.89 E-value=5.7e-23 Score=139.03 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=85.9
Q ss_pred CccccCCCCceEEecC-cEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-HhcCCceeEEEEEe
Q psy5101 1 AYVANRVADKLTRVTD-NIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV-YSYRDSLTAGIICA 78 (111)
Q Consensus 1 ~~i~~~~~~Ki~~i~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l-~~~~~p~~~~~lv~ 78 (111)
.+|++++.+||++|+| |++||.||..||+|+|.++++.++++|+.+.++ .++++++.++ +++++.+.+.++++
T Consensus 24 ~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~~~~~~~~l~a~~iv~ 98 (171)
T cd01913 24 NTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWRTDRYLRRLEAMLIVA 98 (171)
T ss_pred cEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHHhccCcCceEEEEEEe
Confidence 3789999999999999 999999999999999999999999999988774 5677766664 55554566777776
Q ss_pred eecCCCCeEEEEecCCCceeee--ceEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQ--KMAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~--~~~~~Gsgs~~ 111 (111)
++| +||.+||.|.+.+. ++.++||||+|
T Consensus 99 ~~~-----~ly~id~~G~~ie~~~~~~a~GSGS~y 128 (171)
T cd01913 99 DKE-----HTLLISGNGDVIEPDDGIAAIGSGGNY 128 (171)
T ss_pred CCC-----cEEEECCCCCEeccCCCeEEEeCCHHH
Confidence 553 89999999999887 59999999986
No 40
>KOG0184|consensus
Probab=99.89 E-value=1.2e-22 Score=140.08 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=97.3
Q ss_pred cCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEee
Q psy5101 5 NRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAG 79 (111)
Q Consensus 5 ~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G 79 (111)
....+||+.|++||+|+++|+.+|.+.+.+++|.++..|+.+++.++|...+|..+++.+|.+ .|||+++.++++
T Consensus 61 p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~ 140 (254)
T KOG0184|consen 61 PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGS 140 (254)
T ss_pred cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999988654 569999999999
Q ss_pred ecCCCCeEEEEecCCCceeeeceEEeecCC
Q psy5101 80 WDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109 (111)
Q Consensus 80 ~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs 109 (111)
||. +||+||.+||+|..+.++.+++|.|-
T Consensus 141 yd~-~g~~LymiepSG~~~~Y~~aaiGKgr 169 (254)
T KOG0184|consen 141 YDD-EGPQLYMIEPSGSSYGYKGAAIGKGR 169 (254)
T ss_pred EeC-CCceEEEEcCCCCccceeeeeccchh
Confidence 996 89999999999999999999999874
No 41
>KOG0863|consensus
Probab=99.89 E-value=8.3e-23 Score=141.57 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=95.5
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh-----cCCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS-----YRDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~-----~~~p~~~~~lv~G~ 80 (111)
...+||++|++|+++.++|+++|++.|.+++|.++..++..+++++++.-+...|.+-++. .||||+|+++++||
T Consensus 58 s~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gY 137 (264)
T KOG0863|consen 58 SHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGY 137 (264)
T ss_pred HhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEee
Confidence 3568999999999999999999999999999999999999999999999999888887754 36799999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs 109 (111)
|+ .||+||.++|+|.+.++...++|+-|
T Consensus 138 De-~G~hl~e~~Psg~v~e~~g~sIGsRS 165 (264)
T KOG0863|consen 138 DE-SGPHLYEFCPSGNVFECKGMSIGSRS 165 (264)
T ss_pred cC-CCceeEEEcCCccEEEEeeeecccch
Confidence 98 79999999999999999999999866
No 42
>KOG0180|consensus
Probab=99.89 E-value=1.2e-22 Score=135.59 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=101.7
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeeecC
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDR 82 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~D~ 82 (111)
.+.+.+|||+|+|++++|.+|++.|+|++.++++.+..+|+++.+++|-|+.+++++|.+||++|+ ||.+.++|||.|+
T Consensus 35 istdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~ 114 (204)
T KOG0180|consen 35 ISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDD 114 (204)
T ss_pred eeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCC
Confidence 467899999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CCCeEEEEecCCCce-eeeceEEeecCC
Q psy5101 83 KKGGQVYCIPLGGML-MRQKMAMGGSGS 109 (111)
Q Consensus 83 ~~gp~Ly~vd~~G~~-~~~~~~~~Gsgs 109 (111)
++.|.+...|..|.. ...+|++.|.++
T Consensus 115 ~~kPfIc~mD~IGc~~~~~DFVvsGTa~ 142 (204)
T KOG0180|consen 115 DNKPFICGMDLIGCIDAPKDFVVSGTAS 142 (204)
T ss_pred CCCeeEeecccccCcCccCCeEEecchH
Confidence 999999999999998 469999999876
No 43
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.88 E-value=1.4e-22 Score=137.11 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=86.0
Q ss_pred CccccCCCCceEEe-cCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHhcCCceeEEEEEe
Q psy5101 1 AYVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQEL-VYSYRDSLTAGIICA 78 (111)
Q Consensus 1 ~~i~~~~~~Ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~-l~~~~~p~~~~~lv~ 78 (111)
.+|++++.+||++| +|+++||.||..||+|+|.++++.++++|+... .+.+|++++++ .|.+++.+.+.++++
T Consensus 24 ~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~~~~~~~~l~a~~iv~ 98 (171)
T TIGR03692 24 NTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWRTDRYLRRLEAMLIVA 98 (171)
T ss_pred eEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHhhcccccccEEEEEEE
Confidence 37899999999999 599999999999999999999999999998743 47788888885 355554566888887
Q ss_pred eecCCCCeEEEEecCCCceeee--ceEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQ--KMAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~--~~~~~Gsgs~~ 111 (111)
|+| +||.+|+.|.+.+. ++.++||||+|
T Consensus 99 ~~~-----~ly~i~~~G~~ie~~~~~~a~GSGS~~ 128 (171)
T TIGR03692 99 DKE-----TSLLISGTGDVIEPEDGIAAIGSGGNY 128 (171)
T ss_pred cCC-----CEEEEcCCCcEeccCCCeEEEeCCHHH
Confidence 553 89999999999884 69999999986
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.88 E-value=1.7e-21 Score=128.26 Aligned_cols=105 Identities=29% Similarity=0.358 Sum_probs=100.2
Q ss_pred cCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC--CceeEEEEEeeecC
Q psy5101 5 NRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR--DSLTAGIICAGWDR 82 (111)
Q Consensus 5 ~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~--~p~~~~~lv~G~D~ 82 (111)
..+.+||++++++++++++|..+|++.+.++++.+++.|+..+++++++..+++.+++.++.++ +|+.++++|+|+|+
T Consensus 28 ~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~ 107 (164)
T cd01901 28 GSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDE 107 (164)
T ss_pred CCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC
Confidence 5678999999999999999999999999999999999999999999999999999999999886 69999999999998
Q ss_pred CCCeEEEEecCCCceeee-ceEEeecCCC
Q psy5101 83 KKGGQVYCIPLGGMLMRQ-KMAMGGSGST 110 (111)
Q Consensus 83 ~~gp~Ly~vd~~G~~~~~-~~~~~Gsgs~ 110 (111)
++|+||.+|+.|.+.+. +++++|+++.
T Consensus 108 -~~~~l~~id~~g~~~~~~~~~~~G~~~~ 135 (164)
T cd01901 108 -GGGNLYYIDPSGPVIENPGAVATGSRSQ 135 (164)
T ss_pred -CCCEEEEECCCcCEeecCcEEEECCCCH
Confidence 78999999999999998 9999999875
No 45
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.88 E-value=6.1e-22 Score=134.44 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=85.8
Q ss_pred CccccCCCCceEEe-cCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-HhcCCceeEEEEEe
Q psy5101 1 AYVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV-YSYRDSLTAGIICA 78 (111)
Q Consensus 1 ~~i~~~~~~Ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l-~~~~~p~~~~~lv~ 78 (111)
.+|++++.+||++| +|+++|++||..||+|.|.+.++.++++|+.. + ++.+|++.+.++ +.+++|+.+.+|++
T Consensus 25 ~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~----~-~~~~a~l~~~l~~~~~~~~l~~~~lv~ 99 (172)
T PRK05456 25 NTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN----L-LRAAVELAKDWRTDRYLRRLEAMLIVA 99 (172)
T ss_pred cEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc----c-HHHHHHHHHHHHhccCCCccEEEEEEE
Confidence 37899999999999 99999999999999999999999999999832 2 577787776653 44556888999994
Q ss_pred eecCCCCeEEEEecCCCceeee--ceEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQ--KMAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~--~~~~~Gsgs~~ 111 (111)
|. |+||.+|+.|++.+. ++.++||||+|
T Consensus 100 --d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~ 129 (172)
T PRK05456 100 --DK---EHSLIISGNGDVIEPEDGIIAIGSGGNY 129 (172)
T ss_pred --cC---CcEEEECCCCcEeccCCCeEEEecCHHH
Confidence 44 699999999999655 89999999976
No 46
>KOG0182|consensus
Probab=99.87 E-value=9.4e-22 Score=134.94 Aligned_cols=106 Identities=23% Similarity=0.253 Sum_probs=98.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+..+..+|+|+++|+|++.|..+|++..++++|.++.++++++|.+||++.||+++++..+.+ .||++|.++
T Consensus 60 Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~ 139 (246)
T KOG0182|consen 60 LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAAT 139 (246)
T ss_pred ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEE
Confidence 355667899999999999999999999999999999999999999999999999999999988765 569999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeec
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 107 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gs 107 (111)
+.|+|++.||.+|.+||.|-+...+..+.|-
T Consensus 140 ~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~ 170 (246)
T KOG0182|consen 140 LIGVDEERGPSVYKTDPAGYYYGFKATAAGV 170 (246)
T ss_pred EEEeccccCcceEeecCccccccceeeeccc
Confidence 9999999999999999999999888888874
No 47
>KOG0185|consensus
Probab=99.76 E-value=2.4e-18 Score=119.65 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=96.1
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHhcCC---ceeEEEEEeeec
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQR-MELGEEPLVYSGAKLFQELVYSYRD---SLTAGIICAGWD 81 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~-~~~~~~~~~~~~a~~ls~~l~~~~~---p~~~~~lv~G~D 81 (111)
++.+||++|+||+++|+||..||.|.+.+.|.....+.. ...++.+.|+.++++|.+.||.+|. |++..++|||+|
T Consensus 70 ~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~ 149 (256)
T KOG0185|consen 70 KNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVD 149 (256)
T ss_pred cCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeec
Confidence 688999999999999999999999999999988877643 4556999999999999999999876 999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGS 109 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs 109 (111)
.++.|.|-++|..|...+.+..++|.|.
T Consensus 150 ~~g~~~lg~V~~~G~~Y~~~~vATGfg~ 177 (256)
T KOG0185|consen 150 NTGEPFLGYVDLLGVAYESPVVATGFGA 177 (256)
T ss_pred CCCCeeEEEEeeccccccCchhhhhhHH
Confidence 9889999999999999999999999885
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.2e-07 Score=63.35 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=70.2
Q ss_pred cccCCCCceEEec-CcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 3 VANRVADKLTRVT-DNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 3 i~~~~~~Ki~~i~-~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
|.+.+.+|+.+|- ..+..|++|.+||+.+|.+.++.++++|+-+--+ .+.++++-++.- .+.|-+.+-++|+ |
T Consensus 30 vmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aavelaKdwr~D--k~lr~LEAmllVa--d 103 (178)
T COG5405 30 VMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AAVELAKDWRTD--KYLRKLEAMLLVA--D 103 (178)
T ss_pred eeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HHHHHHHhhhhh--hHHHHHhhheeEe--C
Confidence 5677788887774 4899999999999999999999999998632211 222333333321 1223456666665 4
Q ss_pred CCCCeEEEEecCCCceee--eceEEeecCCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMR--QKMAMGGSGSTY 111 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~--~~~~~~Gsgs~~ 111 (111)
+ ..+|-+...|.+.+ .+..++|||..|
T Consensus 104 ~---~~il~isG~gdV~epe~~~~aIGSGgny 132 (178)
T COG5405 104 K---THILIITGNGDVIEPEDDIIAIGSGGNY 132 (178)
T ss_pred C---CcEEEEecCcceecCCCCeEEEcCCchH
Confidence 4 35888999999753 559999999876
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.083 Score=37.07 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=59.8
Q ss_pred cEEEEecCcHHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHh---cC-------C-ceeEEEEEeeecCCC
Q psy5101 17 NIYCCRSGSAADTQAISDFVSYNLDLQRMEL-GEEPLVYSGAKLFQELVYS---YR-------D-SLTAGIICAGWDRKK 84 (111)
Q Consensus 17 ~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~-~~~~~~~~~a~~ls~~l~~---~~-------~-p~~~~~lv~G~D~~~ 84 (111)
-++++.+|-.|-.|.+.+.+....+.-+... -.-+++-+++.++.....+ .- . -|-|+++++|--.-+
T Consensus 44 vlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~ 123 (255)
T COG3484 44 VLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGE 123 (255)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCC
Confidence 3678999999999999999988876322222 2234666777777665432 21 1 578999999986644
Q ss_pred CeEEEEecCCCceee
Q psy5101 85 GGQVYCIPLGGMLMR 99 (111)
Q Consensus 85 gp~Ly~vd~~G~~~~ 99 (111)
-|.||.+-|.|++.+
T Consensus 124 pp~Ly~IYpqGNFIq 138 (255)
T COG3484 124 PPRLYLIYPQGNFIQ 138 (255)
T ss_pred CceeEEEccCCCeee
Confidence 589999999999865
No 50
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=66.11 E-value=14 Score=21.00 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy5101 33 SDFVSYNLDLQRMELGEEPLVYSGAKLF 60 (111)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~a~~l 60 (111)
.+++++.........|++++.+.+|..+
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~l 30 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEEL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4566666777778899999999999886
No 51
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=60.13 E-value=21 Score=22.37 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-CCCHHHH
Q psy5101 29 TQAISDFVSYNLDLQRMELGE-EPLVYSG 56 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 56 (111)
+..+++.++.+++.|++.+++ ++|.+.+
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456788899999999999987 6665544
No 52
>PHA02087 hypothetical protein
Probab=55.94 E-value=12 Score=21.71 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=23.9
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+++|+..--+.-.+|..|...+.+-...|.|-.|
T Consensus 37 ~~~d~nk~v~y~lvdsdg~~ielpe~~ggggi~f 70 (83)
T PHA02087 37 AKFDPNKLVQYMLVDSDGVKIELPESEGGGGITF 70 (83)
T ss_pred hcCCCccceeEEEEcCCCcEEECCcccCCCceee
Confidence 5788854445556799999888777766666543
No 53
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=55.34 E-value=14 Score=23.08 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=13.3
Q ss_pred CCeEEEEecCCCceee
Q psy5101 84 KGGQVYCIPLGGMLMR 99 (111)
Q Consensus 84 ~gp~Ly~vd~~G~~~~ 99 (111)
.+|+||++||.+...+
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 4699999999887654
No 54
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=51.10 E-value=76 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=16.6
Q ss_pred EEEEeeecCCCCeEEEEecCCCc
Q psy5101 74 GIICAGWDRKKGGQVYCIPLGGM 96 (111)
Q Consensus 74 ~~lv~G~D~~~gp~Ly~vd~~G~ 96 (111)
..||.|+|. .+-.|-..||-..
T Consensus 126 ~~ViTGI~~-dg~~i~~~DP~~g 147 (166)
T PF12385_consen 126 ASVITGIDG-DGDSIHVHDPEQG 147 (166)
T ss_pred EEEEEeecC-CCCeEEecCcccC
Confidence 467899998 4677878898654
No 55
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=48.87 E-value=21 Score=17.05 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=16.9
Q ss_pred EEEEEeeecCCCCeEEEEecCCCc
Q psy5101 73 AGIICAGWDRKKGGQVYCIPLGGM 96 (111)
Q Consensus 73 ~~~lv~G~D~~~gp~Ly~vd~~G~ 96 (111)
.+..+-|.-+ +.|.||.+-.+|.
T Consensus 4 N~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 4 NSPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred ccCcEEcccC-CCcEEEEeeccCc
Confidence 3445667766 7799999988875
No 56
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=48.77 E-value=34 Score=21.46 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=28.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHH--Hhh-------CC-CCCHHHHHHHHHHHHHhcC
Q psy5101 23 SGSAADTQAISDFVSYNLDLQR--MEL-------GE-EPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~~--~~~-------~~-~~~~~~~a~~ls~~l~~~~ 68 (111)
.|..-|...+.+.++.-+..+. +.+ .. .+|++.+|.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 5777788888888876444332 221 01 2789999999999887665
No 57
>PRK07105 pyridoxamine kinase; Validated
Probab=46.09 E-value=20 Score=25.70 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCCceEEecCcEEEEecCcHHHHHHHHH
Q psy5101 7 VADKLTRVTDNIYCCRSGSAADTQAISD 34 (111)
Q Consensus 7 ~~~Ki~~i~~~i~~~~sG~~aD~~~l~~ 34 (111)
..+||.-++|+...|.+|..+|...+..
T Consensus 3 ~~~~vl~~~d~~~~G~aG~~adi~~~~~ 30 (284)
T PRK07105 3 PVKRVAAIHDLSGFGRVALTASIPIMSS 30 (284)
T ss_pred CCCeEEEEecccccceehHhhHHHHHHH
Confidence 3468999999999999999999988765
No 58
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=44.61 E-value=1e+02 Score=21.17 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceeEE--EEEeeec-CCCCeEEEEecC-CCceeeeceEEeecCC
Q psy5101 49 EEPLVYSGAKLFQELVYSYRDSLTAG--IICAGWD-RKKGGQVYCIPL-GGMLMRQKMAMGGSGS 109 (111)
Q Consensus 49 ~~~~~~~~a~~ls~~l~~~~~p~~~~--~lv~G~D-~~~gp~Ly~vd~-~G~~~~~~~~~~Gsgs 109 (111)
..++++.+.+.+..+.+.....+.-. +.|.-+. +.+.+.+|.+|. .|.+....++++|.||
T Consensus 9 ~~l~~~~~~~a~~~~~~~~~~~~~~~~~l~iIDfs~pS~~~R~~v~Dl~~~~~l~~~~VaHG~gs 73 (176)
T PF13645_consen 9 PKLSPKAFQKALKAYQCAKKKKIYNKDILTIIDFSKPSGEKRFFVIDLKKGKLLYNTLVAHGRGS 73 (176)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCCCCeEEEEECCCCEEEEeeeeecccCC
Confidence 34566655555544433222211111 2233332 346789999998 5556667899999887
No 59
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=43.10 E-value=6.8 Score=25.83 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=54.2
Q ss_pred cCCCCceEEecCcEEEEec-----------CcHHHHHHHHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHhcCCcee
Q psy5101 5 NRVADKLTRVTDNIYCCRS-----------GSAADTQAISDFVSYNLDLQRMELGEEP-LVYSGAKLFQELVYSYRDSLT 72 (111)
Q Consensus 5 ~~~~~Ki~~i~~~i~~~~s-----------G~~aD~~~l~~~~~~~~~~~~~~~~~~~-~~~~~a~~ls~~l~~~~~p~~ 72 (111)
++..+|+-...+|+..-+. --..|.+.|.+++...+++....++-++ +|+.++.-=+...-.+..|-.
T Consensus 6 n~~l~~~~~~~~htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k 85 (143)
T COG5469 6 NTFLEKINGMPKHTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGK 85 (143)
T ss_pred cccchhccccCceEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCC
Confidence 4455677777666654332 2246889999999988888887776666 455555432222222333444
Q ss_pred EEEEEeeecCCC-------CeEEEEecCCCce
Q psy5101 73 AGIICAGWDRKK-------GGQVYCIPLGGML 97 (111)
Q Consensus 73 ~~~lv~G~D~~~-------gp~Ly~vd~~G~~ 97 (111)
-+-++++.+++. +.+||.-...|.+
T Consensus 86 ~sYLFgdL~p~d~a~dLl~~a~ly~~~~dG~~ 117 (143)
T COG5469 86 PSYLFGDLTPDDSASDLLEFAQLYANSADGLV 117 (143)
T ss_pred ceEEEccCCccccHHHHHHHHHHhhhcccCcc
Confidence 455666776643 2356655555553
No 60
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=43.00 E-value=56 Score=18.39 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=14.0
Q ss_pred HHHHHHHhhCCCCCHHHHHHHH
Q psy5101 39 NLDLQRMELGEEPLVYSGAKLF 60 (111)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~a~~l 60 (111)
.+..|...+|.+||+++++..+
T Consensus 14 ~I~~~~~~~G~~Pt~rEIa~~~ 35 (65)
T PF01726_consen 14 FIREYIEENGYPPTVREIAEAL 35 (65)
T ss_dssp HHHHHHHHHSS---HHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHh
Confidence 3445567789999999998876
No 61
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=41.66 E-value=29 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=19.4
Q ss_pred EEEEecCcHHHHHHHHHHHHHHHH
Q psy5101 18 IYCCRSGSAADTQAISDFVSYNLD 41 (111)
Q Consensus 18 i~~~~sG~~aD~~~l~~~~~~~~~ 41 (111)
+.||-.|.++|+|.++..+..+.+
T Consensus 45 l~cGNGgSaadAqHfaael~gRf~ 68 (176)
T COG0279 45 LACGNGGSAADAQHFAAELTGRFE 68 (176)
T ss_pred EEECCCcchhhHHHHHHHHhhHHH
Confidence 678888999999999987765543
No 62
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.08 E-value=20 Score=21.80 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=11.7
Q ss_pred CCeEEEEecCCCcee
Q psy5101 84 KGGQVYCIPLGGMLM 98 (111)
Q Consensus 84 ~gp~Ly~vd~~G~~~ 98 (111)
.+|+|+++||.--..
T Consensus 24 d~PrL~yvdp~~~~~ 38 (89)
T cd01262 24 NGPRLIYVDPVKKVV 38 (89)
T ss_pred cCceEEEEcCCcCeE
Confidence 479999999975443
No 63
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=40.29 E-value=77 Score=21.97 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY 67 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~ 67 (111)
+++++++++..+.......+....+-...|.||++|+.-
T Consensus 125 ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~~ 163 (184)
T COG2096 125 ARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFVL 163 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 577788887777666555555556667789999998753
No 64
>KOG1593|consensus
Probab=39.11 E-value=1.1e+02 Score=22.82 Aligned_cols=48 Identities=13% Similarity=0.311 Sum_probs=34.3
Q ss_pred EEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC
Q psy5101 20 CCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 20 ~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~ 68 (111)
+|.++.++|...+.++|-+......++.|.++ .+++-+-|++++..+.
T Consensus 254 vGaa~aTGdGDvmMRFLPs~~aVe~Mr~G~~P-~eAa~~~i~RI~khfp 301 (349)
T KOG1593|consen 254 VGAAAATGDGDVMMRFLPSYQAVEQMRAGKKP-AEAAQKAISRILKHFP 301 (349)
T ss_pred ccceeecCCchhHHHhhhHHHHHHHHHcCCCh-HHHHHHHHHHHHHhCc
Confidence 46677788999999999888887778887653 3444445677765543
No 65
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=38.99 E-value=92 Score=22.17 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhh----CCCCCHH-HHHHHHHHHHHhcCC---ceeEEEEEeeecCCCCeEEEEecC--CCcee
Q psy5101 29 TQAISDFVSYNLDLQRMEL----GEEPLVY-SGAKLFQELVYSYRD---SLTAGIICAGWDRKKGGQVYCIPL--GGMLM 98 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~----~~~~~~~-~~a~~ls~~l~~~~~---p~~~~~lv~G~D~~~gp~Ly~vd~--~G~~~ 98 (111)
...+.+.+...+..-...+ -...+.+ .++..+|..++.+.+ |+.+...+-.|+...++.+ .++. .-...
T Consensus 152 i~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~-~i~~~i~v~~~ 230 (270)
T TIGR00436 152 TSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLL-KIHALISVERE 230 (270)
T ss_pred HHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeE-EEEEEEEECcC
Confidence 4455565555444322222 2233344 466788888877665 9999999999976333444 2332 12223
Q ss_pred eeceEEeecCC
Q psy5101 99 RQKMAMGGSGS 109 (111)
Q Consensus 99 ~~~~~~~Gsgs 109 (111)
+.+-...|.+.
T Consensus 231 s~k~iiig~~g 241 (270)
T TIGR00436 231 SQKKIIIGKNG 241 (270)
T ss_pred CceeEEEcCCc
Confidence 34556666553
No 66
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=37.27 E-value=61 Score=21.58 Aligned_cols=33 Identities=12% Similarity=0.007 Sum_probs=25.6
Q ss_pred hhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 46 ELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 46 ~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
..|+.++.+++|++|.+.....+ -+.++|||-|
T Consensus 73 e~Gk~~sS~~fA~~l~~~~~~g~---~i~FvIGGa~ 105 (153)
T TIGR00246 73 IPGKPWTTPQLADTLEKWKTDGR---DVTLLIGGPE 105 (153)
T ss_pred CCCCcCCHHHHHHHHHHHhccCC---eEEEEEcCCC
Confidence 45889999999999988743332 4888999865
No 67
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=36.98 E-value=87 Score=19.10 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHH
Q psy5101 8 ADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDL 42 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~ 42 (111)
.++...+.|++++|.+-.....+.+.+.++..+..
T Consensus 22 v~~~~~~~dy~VI~Tg~S~rh~~aia~~v~~~~k~ 56 (99)
T TIGR00090 22 VRGKSSIADYFVIASGTSSRHVKAIADNVEEELKE 56 (99)
T ss_pred CCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999988888754
No 68
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=36.89 E-value=87 Score=21.30 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=30.3
Q ss_pred EecCcEEEEecCcHHH---HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q psy5101 13 RVTDNIYCCRSGSAAD---TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY 67 (111)
Q Consensus 13 ~i~~~i~~~~sG~~aD---~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~ 67 (111)
++..+|.=|.+-..|- +++++++++..+-...........+-...|.||+++|.-
T Consensus 98 ~l~~FiLPggs~~~A~lh~aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD~lFvl 155 (171)
T TIGR00636 98 PLKLFVLPGGTPAAAFLHVARTVARRAERRVVALLKEEEINEVVLVYLNRLSDLLFVL 155 (171)
T ss_pred CCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555444443332 456666666555443222223344557889999998753
No 69
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=36.12 E-value=80 Score=21.00 Aligned_cols=38 Identities=5% Similarity=-0.019 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
+++++++++..+............+-...|.||+.+|.
T Consensus 120 aRtv~RraER~~v~l~~~~~v~~~il~ylNRLSd~lfv 157 (163)
T PF01923_consen 120 ARTVCRRAERRAVRLFREEEVRPDILRYLNRLSDYLFV 157 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45556666555544444433333455677888888764
No 70
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.78 E-value=28 Score=24.15 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=16.4
Q ss_pred EEEEeeecCCCCeEEEEecCCCc
Q psy5101 74 GIICAGWDRKKGGQVYCIPLGGM 96 (111)
Q Consensus 74 ~~lv~G~D~~~gp~Ly~vd~~G~ 96 (111)
+.+|-|+|+ +.+|..||.|-
T Consensus 150 ~v~itgyDk---~n~yynDpyG~ 169 (195)
T COG4990 150 SVLITGYDK---YNIYYNDPYGY 169 (195)
T ss_pred eeEeecccc---cceEecccccc
Confidence 357889998 67999999875
No 71
>KOG3652|consensus
Probab=33.82 E-value=88 Score=26.42 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=42.0
Q ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeeecCCCCeEEEEecCCCc
Q psy5101 22 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGM 96 (111)
Q Consensus 22 ~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~D~~~gp~Ly~vd~~G~ 96 (111)
-+|-++-+..|++.+- ..+.|+++....+.++-..+++--.- -|.|-.+++..=- +||-||.+|..|-
T Consensus 192 eAGRAaAc~sLcRIfc------SKksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~l-n~p~LFccdLkGI 260 (1215)
T KOG3652|consen 192 EAGRAAACASLCRIFC------SKKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFL-NGPNLFCCDLKGI 260 (1215)
T ss_pred hhhHHHHHHHHHHhhh------cccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeee-cCCceeeecCCch
Confidence 4566666666655432 24578899999999987765543211 2334444443322 6899999998774
No 72
>COG1647 Esterase/lipase [General function prediction only]
Probab=33.76 E-value=33 Score=24.72 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=16.6
Q ss_pred EecCcHHHHHHHHHHHHHH
Q psy5101 21 CRSGSAADTQAISDFVSYN 39 (111)
Q Consensus 21 ~~sG~~aD~~~l~~~~~~~ 39 (111)
|.+|.++|.+.|.++|+.+
T Consensus 23 GFTGt~~Dvr~Lgr~L~e~ 41 (243)
T COG1647 23 GFTGTPRDVRMLGRYLNEN 41 (243)
T ss_pred ccCCCcHHHHHHHHHHHHC
Confidence 6789999999999988765
No 73
>KOG4269|consensus
Probab=33.08 E-value=70 Score=27.72 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=33.9
Q ss_pred EEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy5101 19 YCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV 64 (111)
Q Consensus 19 ~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l 64 (111)
+.=.||.+.|++.|.+....+...--.....+|++.++|.+|.-++
T Consensus 941 IyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYl 986 (1112)
T KOG4269|consen 941 IYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYL 986 (1112)
T ss_pred eEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHH
Confidence 3467999999999999887775444445567788888887775544
No 74
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.72 E-value=63 Score=19.45 Aligned_cols=26 Identities=8% Similarity=0.290 Sum_probs=19.2
Q ss_pred EEEEecCcHHHHHHHHHHHHHHHHHHHH
Q psy5101 18 IYCCRSGSAADTQAISDFVSYNLDLQRM 45 (111)
Q Consensus 18 i~~~~sG~~aD~~~l~~~~~~~~~~~~~ 45 (111)
+.+|.+|.++. .+++.++..+..+..
T Consensus 3 l~~Cg~G~sTS--~~~~ki~~~~~~~~~ 28 (96)
T cd05564 3 LLVCSAGMSTS--ILVKKMKKAAEKRGI 28 (96)
T ss_pred EEEcCCCchHH--HHHHHHHHHHHHCCC
Confidence 46888999887 467888887776543
No 75
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=32.63 E-value=62 Score=19.36 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=27.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHH--HHhhC----CCCCHHHHHHHHHHHHH
Q psy5101 23 SGSAADTQAISDFVSYNLDLQ--RMELG----EEPLVYSGAKLFQELVY 65 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~--~~~~~----~~~~~~~~a~~ls~~l~ 65 (111)
.|..-|...+.+.++.-.+.+ ++.+. ..+|++.+|.++-+.+.
T Consensus 43 ~g~v~Df~~lk~~~~~i~~~lDh~~Lne~~~~~~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 43 AGMVMDFSDLKAIVKEVVDRLDHALLNDVPGLENPTAENLARWIYDRLK 91 (92)
T ss_pred ccEEEEHHHHHHHHHHHHHhCCCcEeeCCCCCCCCCHHHHHHHHHHHHh
Confidence 466668887777776544433 22222 24789999999987653
No 76
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=31.81 E-value=1e+02 Score=24.27 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCceeEEEEEeeecCCCCeEEEEecCCCc
Q psy5101 56 GAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 96 (111)
Q Consensus 56 ~a~~ls~~l~~~~~p~~~~~lv~G~D~~~gp~Ly~vd~~G~ 96 (111)
+++.+++.++...+-..-.+++.+-+.++|..||.++.-+.
T Consensus 140 i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~yf~~ 180 (435)
T COG0017 140 ILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDYFDK 180 (435)
T ss_pred HHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEeecCc
Confidence 44444555555544445557778888889999999987665
No 77
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=30.65 E-value=62 Score=17.64 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC-CHHHHHHHH
Q psy5101 30 QAISDFVSYNLDLQRMELGEEP-LVYSGAKLF 60 (111)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~a~~l 60 (111)
+++.+.++..+..-++..|..+ +...+|+.+
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~ 34 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY 34 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh
Confidence 5677888888888788888888 667777765
No 78
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=30.32 E-value=53 Score=16.97 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhCCCC-CHHHHHHHH
Q psy5101 33 SDFVSYNLDLQRMELGEEP-LVYSGAKLF 60 (111)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~a~~l 60 (111)
.+.++..+....+..+..+ +..++|+.+
T Consensus 2 ~~~l~~~i~~~~~~~~~~l~s~~~la~~~ 30 (60)
T smart00345 2 AERLREDIVSGELRPGDKLPSERELAAQL 30 (60)
T ss_pred HHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 3455555555555555555 566666655
No 79
>KOG2449|consensus
Probab=29.39 E-value=1.8e+02 Score=19.48 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCHH--HHHHHHHHHHHhcCCce-eEEEEEeeecCC--CCeEEEEecCCCce
Q psy5101 25 SAADTQAISDFVSYNLDLQRMELGEEPLVY--SGAKLFQELVYSYRDSL-TAGIICAGWDRK--KGGQVYCIPLGGML 97 (111)
Q Consensus 25 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~--~~a~~ls~~l~~~~~p~-~~~~lv~G~D~~--~gp~Ly~vd~~G~~ 97 (111)
+.+|++.+.+.+......++..-+.++.++ +.+..+.+++++- .|+ ++...|-||.+. .||.+..+-|.=++
T Consensus 4 ~vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS~-~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ms~ 80 (157)
T KOG2449|consen 4 MVGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQSE-DPLDGRFIYLPGYAEGNFVGPTILSVTPNMSC 80 (157)
T ss_pred EechhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcCc-CccCCceEEeeccccCCcccceEEEecCCcce
Confidence 356899999999999999999888887654 4444555555552 343 666667788653 46887777775554
No 80
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=29.15 E-value=79 Score=21.06 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=22.5
Q ss_pred hhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 46 ELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 46 ~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
..|+.++-+++|++|.+...... -.+.++|||-|
T Consensus 75 ~~Gk~~sS~~fA~~l~~~~~~g~--~~i~F~IGG~~ 108 (155)
T PF02590_consen 75 ERGKQLSSEEFAKKLERWMNQGK--SDIVFIIGGAD 108 (155)
T ss_dssp TTSEE--HHHHHHHHHHHHHTTS---EEEEEE-BTT
T ss_pred CCCccCChHHHHHHHHHHHhcCC--ceEEEEEecCC
Confidence 46788999999999999765533 35677888765
No 81
>KOG3905|consensus
Probab=28.82 E-value=1.7e+02 Score=22.67 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhCCC---------CCHHHHHHHHHHHHHhcC--Cce-e----EEEEEeeecCCCCeEE
Q psy5101 34 DFVSYNLDLQRMELGEE---------PLVYSGAKLFQELVYSYR--DSL-T----AGIICAGWDRKKGGQV 88 (111)
Q Consensus 34 ~~~~~~~~~~~~~~~~~---------~~~~~~a~~ls~~l~~~~--~p~-~----~~~lv~G~D~~~gp~L 88 (111)
+++...++.|.+++|.. =++.-+-++|-...|.+- .|- . +-+|=||||.++.-.|
T Consensus 250 dfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~I 320 (473)
T KOG3905|consen 250 DFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDI 320 (473)
T ss_pred HHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchh
Confidence 45566666677777643 233444444444333322 242 2 2367799998654333
No 82
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.21 E-value=59 Score=20.50 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=28.9
Q ss_pred ceEEecCcEEEEecCcHHHHHHHHHHHHHH---HHHHHHhhC
Q psy5101 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYN---LDLQRMELG 48 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~---~~~~~~~~~ 48 (111)
-++.|-+.+++...|..+|.-...++++.. +..|++..|
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~~A~~YRHYKG 50 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLIKKASYYRHYKG 50 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhhccchheEeecC
Confidence 478899999998888888888888777654 345555444
No 83
>KOG1559|consensus
Probab=28.04 E-value=2.3e+02 Score=20.94 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeecC
Q psy5101 26 AADTQAISDFVSYNLDLQ-RMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDR 82 (111)
Q Consensus 26 ~aD~~~l~~~~~~~~~~~-~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D~ 82 (111)
+.|+-++++.+...+... +...+++-+- +.+++++|.+. |..++--.-|+|+
T Consensus 283 sedAiqvtqhaA~~lVsEARKs~nrp~Se----kvlsnLIYnyk-PtY~Gy~gsg~de 335 (340)
T KOG1559|consen 283 SEDAIQVTQHAANYLVSEARKSLNRPESE----KVLSNLIYNYK-PTYCGYAGSGYDE 335 (340)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcCCccHH----HHHHHHHhccC-cceeccccCccce
Confidence 456666666655444333 3333443332 55667777776 6555444445554
No 84
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=26.24 E-value=1.4e+02 Score=19.88 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=24.8
Q ss_pred hhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 46 ELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 46 ~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
..|+.++.+++|+++.+..-... -.+.++|||-|
T Consensus 75 e~Gk~~sS~~fA~~l~~~~~~g~--~~i~F~IGGa~ 108 (157)
T PRK00103 75 ERGKQLSSEEFAQELERWRDDGR--SDVAFVIGGAD 108 (157)
T ss_pred CCCCcCCHHHHHHHHHHHHhcCC--ccEEEEEcCcc
Confidence 45889999999999988643332 24778888754
No 85
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=25.97 E-value=1.1e+02 Score=16.01 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q psy5101 30 QAISDFVSYNLDLQRMELGEEPL-VYSGAKLF 60 (111)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~a~~l 60 (111)
+.+.+.++..+.......+..++ ...+|+.+
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~ 35 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEEL 35 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Confidence 34566666666555444454444 66666544
No 86
>PRK11538 ribosome-associated protein; Provisional
Probab=25.66 E-value=1.7e+02 Score=18.13 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHH
Q psy5101 7 VADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLD 41 (111)
Q Consensus 7 ~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~ 41 (111)
+.++...+.|+.+++.+-.....+.+++.+..++.
T Consensus 26 Dv~~~~~~~Dy~VIatg~S~rh~~aia~~v~~~~k 60 (105)
T PRK11538 26 DVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60 (105)
T ss_pred ECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 44566778899999998888899999888877654
No 87
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=25.28 E-value=71 Score=19.46 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=10.0
Q ss_pred EEEeeecCCCCeEEEEecC
Q psy5101 75 IICAGWDRKKGGQVYCIPL 93 (111)
Q Consensus 75 ~lv~G~D~~~gp~Ly~vd~ 93 (111)
.+|.|+|+ ++ .++..||
T Consensus 127 vvi~Gy~~-~~-~~~v~DP 143 (144)
T PF13529_consen 127 VVIIGYDE-DG-YVYVNDP 143 (144)
T ss_dssp EEEEEE-S-SE--EEEE-T
T ss_pred EEEEEEeC-CC-EEEEeCC
Confidence 57888988 34 6777787
No 88
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=24.58 E-value=2.9e+02 Score=22.33 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=14.8
Q ss_pred CCceeEEEEEeee-----cCCCCeEEEEecCCCce
Q psy5101 68 RDSLTAGIICAGW-----DRKKGGQVYCIPLGGML 97 (111)
Q Consensus 68 ~~p~~~~~lv~G~-----D~~~gp~Ly~vd~~G~~ 97 (111)
.||+.| ||+ ++-+||.+ ..|+.|+.
T Consensus 374 nRPiRV----CGMVkNeGEPGGGPFw-v~~~dG~~ 403 (513)
T PF14134_consen 374 NRPIRV----CGMVKNEGEPGGGPFW-VKNEDGTV 403 (513)
T ss_pred CCCcee----eeccccCCCCCCCCeE-EECCCCCE
Confidence 458865 554 23355655 44888874
No 89
>PRK15494 era GTPase Era; Provisional
Probab=24.40 E-value=2.4e+02 Score=21.03 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhC----CCCCHHH-HHHHHHHHHHhcCC---ceeEEEEEeeecCCCCeEEEEecCC--Ccee
Q psy5101 29 TQAISDFVSYNLDLQRMELG----EEPLVYS-GAKLFQELVYSYRD---SLTAGIICAGWDRKKGGQVYCIPLG--GMLM 98 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~-~a~~ls~~l~~~~~---p~~~~~lv~G~D~~~gp~Ly~vd~~--G~~~ 98 (111)
...+.+.+...+..-...+- ...+.+. ++..+|..+..+.+ |+.+...+-.|++.....+ .++.. =...
T Consensus 204 v~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~-~i~~~i~v~~~ 282 (339)
T PRK15494 204 IDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSV-KINQVIVVSRE 282 (339)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeE-EEEEEEEECCC
Confidence 44555555554443332222 2345554 57778888887776 9999999999976332232 33321 1112
Q ss_pred eeceEEeecCC
Q psy5101 99 RQKMAMGGSGS 109 (111)
Q Consensus 99 ~~~~~~~Gsgs 109 (111)
+.+-...|.+.
T Consensus 283 sqk~iiiG~~g 293 (339)
T PRK15494 283 SYKTIILGKNG 293 (339)
T ss_pred CceeEEEcCCc
Confidence 35556666654
No 90
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=24.33 E-value=95 Score=21.99 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=17.7
Q ss_pred eEEEEEeeecCCCCeEEEEecCCCc
Q psy5101 72 TAGIICAGWDRKKGGQVYCIPLGGM 96 (111)
Q Consensus 72 ~~~~lv~G~D~~~gp~Ly~vd~~G~ 96 (111)
|=..||+|||.. .-.+++-||.=+
T Consensus 161 GHYVVlcGyd~~-~~~~~yrdPa~~ 184 (212)
T PF09778_consen 161 GHYVVLCGYDAA-TKEFEYRDPASS 184 (212)
T ss_pred EEEEEEEeecCC-CCeEEEeCCccc
Confidence 555899999984 456777798544
No 91
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=24.32 E-value=1.9e+02 Score=18.10 Aligned_cols=45 Identities=9% Similarity=-0.056 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHHHHHHHH--HHhhC------CCCCHHHHHHHHHHHHHhcCC
Q psy5101 24 GSAADTQAISDFVSYNLDLQ--RMELG------EEPLVYSGAKLFQELVYSYRD 69 (111)
Q Consensus 24 G~~aD~~~l~~~~~~~~~~~--~~~~~------~~~~~~~~a~~ls~~l~~~~~ 69 (111)
|. -|...+.+.++.-+..+ ++.+. ..+|.+.+|.++-+.+.....
T Consensus 39 g~-vDf~~lk~~l~~v~~~~DH~~LNdv~~f~~~~PTaEniA~~i~~~l~~~l~ 91 (113)
T TIGR03112 39 KF-ILFNDVEKKVEKYLKPYQNKYLNDLEPFDKINPTLENIGDYFFDEIKKLLK 91 (113)
T ss_pred eE-EEHHHHHHHHHHHHHcCCCceeccCCccCCCCCCHHHHHHHHHHHHHHhhc
Confidence 44 36666666665544433 33333 247899999999998887664
No 92
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.01 E-value=1.4e+02 Score=20.27 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=38.2
Q ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH---HHHhcCCceeEE
Q psy5101 22 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE---LVYSYRDSLTAG 74 (111)
Q Consensus 22 ~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~---~l~~~~~p~~~~ 74 (111)
++-..-|.....+.+...+..-+.+|-+.||.-.+...++. +|+..|-|+...
T Consensus 51 ~s~~~~~~~~~~k~is~kI~~iK~RYTRRiSLfEiTGIiaESyNLLqRGRlPLv~d 106 (167)
T PF05320_consen 51 ASENIEDQTSVPKQISEKISAIKKRYTRRISLFEITGIIAESYNLLQRGRLPLVSD 106 (167)
T ss_pred hhcCcccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHccccccccc
Confidence 33344555666777777778888889999999999999886 456666687543
No 93
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=23.92 E-value=1.9e+02 Score=19.86 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 32 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 32 l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
|.++.|+-...-+...+.+++-..+|..|++.+..
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~a 36 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLEA 36 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhcC
Confidence 55666666666566678899999999999999754
No 94
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=23.73 E-value=99 Score=15.07 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=5.3
Q ss_pred EEecCCCcee
Q psy5101 89 YCIPLGGMLM 98 (111)
Q Consensus 89 y~vd~~G~~~ 98 (111)
|.+|+.|.+.
T Consensus 20 y~YD~~g~l~ 29 (38)
T PF05593_consen 20 YTYDAAGRLT 29 (38)
T ss_pred EEECCCCCEE
Confidence 5555555543
No 95
>PF14515 HOASN: Haem-oxygenase-associated N-terminal helices; PDB: 3BJD_B.
Probab=23.57 E-value=1.3e+02 Score=18.10 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=28.3
Q ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 22 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 22 ~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
..|+.+|.+.... .+..+|.+.-+..+.++.--+|+++.+|.
T Consensus 47 ~kgL~GD~~AYA~---YQ~LL~~L~~~~D~~T~~TRRW~A~~iYr 88 (93)
T PF14515_consen 47 EKGLQGDRQAYAA---YQQLLYELSLSDDVPTAPTRRWMASAIYR 88 (93)
T ss_dssp HHHHTT-HHHHHH---HHHHHHHHHH---GGGHHHHHHHHHHHHH
T ss_pred HhhcCCcHHHHHH---HHHHHHhhhccCCCcchHHHHHHHHHHHH
Confidence 4577778776544 56667778788888888889999888774
No 96
>KOG0572|consensus
Probab=22.83 E-value=3.5e+02 Score=21.37 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=8.4
Q ss_pred EEEEecCcHHHHHHHHHHH
Q psy5101 18 IYCCRSGSAADTQAISDFV 36 (111)
Q Consensus 18 i~~~~sG~~aD~~~l~~~~ 36 (111)
+.++-.|..-+..+|.+++
T Consensus 100 lavAHNGnLVN~~~Lrr~l 118 (474)
T KOG0572|consen 100 LAVAHNGNLVNYKSLRREL 118 (474)
T ss_pred EEEeccCcccchHHHHHHH
Confidence 3444445444444444433
No 97
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=22.40 E-value=2.1e+02 Score=17.95 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy5101 25 SAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV 64 (111)
Q Consensus 25 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l 64 (111)
++.|-..+++++|. |-.+++..++++.+++.+...+
T Consensus 38 LT~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 38 LTEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 45566777777776 3356678888899988876543
No 98
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=22.38 E-value=2.5e+02 Score=19.12 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=27.0
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy5101 23 SGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQE 62 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~ 62 (111)
+|...|.+.+.+.+..++..|. ..|-+..+..+.+-|+.
T Consensus 112 ~g~~~d~~~F~~~V~~qv~~yl-~~glP~Ra~~f~~aL~~ 150 (164)
T PF04315_consen 112 NGDEPDRQAFKQKVHAQVLRYL-ENGLPPRAQRFIDALQA 150 (164)
T ss_pred CCCCccHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHH
Confidence 5678899999999999999885 45544444444444433
No 99
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=22.35 E-value=2e+02 Score=21.65 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=27.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhC
Q psy5101 16 DNIYCCRSGSAADTQAISDFVSYNLDLQRMELG 48 (111)
Q Consensus 16 ~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~ 48 (111)
+++.+..-|+.+|+-.....+..+...-....|
T Consensus 258 k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~G 290 (320)
T COG0276 258 KKIIVVPIGFVSDHLETLYEIDHEYRELAEEAG 290 (320)
T ss_pred CeEEEECCchhhhhHHHHHHHHHHHHHHHHHhC
Confidence 468899999999999999999888776655555
No 100
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=22.33 E-value=2.1e+02 Score=17.97 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy5101 25 SAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV 64 (111)
Q Consensus 25 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l 64 (111)
++.|-..+++++|. |-.+++..++++.+++.+...+
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 45566677777776 3356678888899998876543
No 101
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=22.07 E-value=78 Score=22.08 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=19.6
Q ss_pred ceEEecCcEEEEecCcHHHHHHHHH
Q psy5101 10 KLTRVTDNIYCCRSGSAADTQAISD 34 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~aD~~~l~~ 34 (111)
||.-|++.-..|.+|+.+|...+..
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~ 25 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQR 25 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHH
Confidence 5667788888888888888887754
No 102
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=21.92 E-value=1.1e+02 Score=14.92 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=8.8
Q ss_pred cCCCCeEEEEecCCCcee
Q psy5101 81 DRKKGGQVYCIPLGGMLM 98 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~ 98 (111)
|+.+...-|..|..|.+.
T Consensus 12 ~p~G~~~~~~YD~~Grl~ 29 (42)
T TIGR01643 12 DADGTTTRYTYDAAGRLV 29 (42)
T ss_pred CCCCCEEEEEECCCCCEE
Confidence 443334455555555543
No 103
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.87 E-value=1.2e+02 Score=18.31 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=17.8
Q ss_pred EEEEecCcHHHHHHHHHHHHHHHHHHH
Q psy5101 18 IYCCRSGSAADTQAISDFVSYNLDLQR 44 (111)
Q Consensus 18 i~~~~sG~~aD~~~l~~~~~~~~~~~~ 44 (111)
+++|.+|.++- .+++.++..++.+.
T Consensus 7 Ll~C~~G~sSS--~l~~k~~~~~~~~g 31 (95)
T TIGR00853 7 LLLCAAGMSTS--LLVNKMNKAAEEYG 31 (95)
T ss_pred EEECCCchhHH--HHHHHHHHHHHHCC
Confidence 46788887755 47788888876543
No 104
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=21.80 E-value=2e+02 Score=18.52 Aligned_cols=46 Identities=4% Similarity=-0.116 Sum_probs=30.9
Q ss_pred cCcHHHHHHHHHHHHHHHH---HHHHhhC-------CCCCHHHHHHHHHHHHHhcC
Q psy5101 23 SGSAADTQAISDFVSYNLD---LQRMELG-------EEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~---~~~~~~~-------~~~~~~~~a~~ls~~l~~~~ 68 (111)
.|+.-|...+.+.++..+. .|++.+. ..+|.+.+|.++-+.+....
T Consensus 57 ~GmviDF~~lk~~l~~~i~~~lDH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~~~l 112 (135)
T cd00470 57 TGMVMNLTDLKKAIEEAIMKPLDHKNLDDDVPYFADVVSTTENLAVYIWDNLQKVL 112 (135)
T ss_pred CCEEEEHHHHHHHHHHHHHhhcCCceeccccccccCCCCCHHHHHHHHHHHHHhhc
Confidence 4677788888877765432 2333332 35789999999988876654
No 105
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=21.66 E-value=2.8e+02 Score=22.72 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=36.8
Q ss_pred ecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCC-------CCCHHHHHHHHHHHH
Q psy5101 14 VTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGE-------EPLVYSGAKLFQELV 64 (111)
Q Consensus 14 i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~a~~ls~~l 64 (111)
-+++|.|-..|...|+++|++.+-.-.+.+-..... +|.+.++|...-.+|
T Consensus 366 ~~p~IlmN~~gt~~dV~TLaHElGHs~Hs~~s~~~qp~~~~~~~i~~AEiAS~fnE~l 423 (598)
T COG1164 366 DHPFILMNYDGTLRDVFTLAHELGHSVHSYFSRKHQPYLYADYSIFLAEIASTFNEML 423 (598)
T ss_pred CCCeEEEeCCCchhHHHHHHHHccHHHHHHHHhccCCccccCCchHHHHHHHHHHHHH
Confidence 568899999999999999999999888876444333 344555555544433
No 106
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.90 E-value=1.8e+02 Score=19.55 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=29.1
Q ss_pred EecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc
Q psy5101 21 CRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS 70 (111)
Q Consensus 21 ~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p 70 (111)
=.+|.....+.+.+.+......+... -...++..+|..+...+..--.|
T Consensus 38 R~sg~~~~i~~L~~~~~~~~~~~~~~-~~~~d~~~va~llK~yLreLP~p 86 (184)
T cd04385 38 RKNGKNSSVKKLLEAFRKDARSVQLR-EGEYTVHDVADVLKRFLRDLPDP 86 (184)
T ss_pred eCCCcHHHHHHHHHHHhcCCCcCCCC-cccCCHHHHHHHHHHHHHhCCCc
Confidence 45677778777777665432212111 13457888888888777654433
No 107
>PRK14566 triosephosphate isomerase; Provisional
Probab=20.62 E-value=1.8e+02 Score=21.16 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHH--------HHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeee
Q psy5101 25 SAADTQAISDFVSYNLD--------LQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGW 80 (111)
Q Consensus 25 ~~aD~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~ 80 (111)
...|+|.+...+|+.+. ..+..||=.++++.+..+++. |-.-+++|+|.
T Consensus 187 t~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~-------~dIDG~LVGgA 243 (260)
T PRK14566 187 TPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQ-------PDVDGGLIGGA 243 (260)
T ss_pred CHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcC-------CCCCeEEechH
Confidence 45678888888888764 246777878888888876632 55556666653
No 108
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=20.61 E-value=2.7e+02 Score=18.44 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=26.8
Q ss_pred cEEEEecCcHHHHHHHHHHHHHHHHHHH-------HhhCCCCCHHHHHHHHHHHHHhcCCcee
Q psy5101 17 NIYCCRSGSAADTQAISDFVSYNLDLQR-------MELGEEPLVYSGAKLFQELVYSYRDSLT 72 (111)
Q Consensus 17 ~i~~~~sG~~aD~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~a~~ls~~l~~~~~p~~ 72 (111)
++++|+|| ..|+..|...+........ ..++.......-+..+.++.....-|+.
T Consensus 1 ki~va~SG-G~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~ 62 (182)
T PF01171_consen 1 KILVAVSG-GKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLY 62 (182)
T ss_dssp EEEEE--S-SHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcC-CHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceE
Confidence 36778888 4588888887766543221 1222223334445555555544443443
No 109
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=20.50 E-value=1.6e+02 Score=19.09 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-CCHHHHHHHH
Q psy5101 30 QAISDFVSYNLDLQRMELGEE-PLVYSGAKLF 60 (111)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~a~~l 60 (111)
.++++.++..+..-.+.-|.+ ||++++|..+
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~ 45 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDL 45 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHh
Confidence 467888888888888888877 4788999876
No 110
>PRK12427 flagellar biosynthesis sigma factor; Provisional
Probab=20.35 E-value=2.9e+02 Score=19.32 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l 60 (111)
.+...+.++.....+....|++++++.+|..+
T Consensus 96 vr~~~~~i~~~~~~l~~~~g~~pt~~eiA~~l 127 (231)
T PRK12427 96 LRQKTHKTNDAIREIAKRLGHEPNFEEISAEL 127 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 34455556555666667778899988888875
No 111
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=20.10 E-value=1.5e+02 Score=20.25 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l 60 (111)
.+.+.+.++..+..-++.-|..++...+|+.+
T Consensus 13 ~e~v~~~l~~~I~~g~l~pG~~L~e~~La~~l 44 (221)
T PRK11414 13 TLQVENDLKHQLSIGALKPGARLITKNLAEQL 44 (221)
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 46788999999999999999999887766654
No 112
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=20.09 E-value=2.2e+02 Score=17.91 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=27.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc
Q psy5101 23 SGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS 70 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p 70 (111)
+|...+.+.+.+.+...-.... .-...++..+|..+...+..-..|
T Consensus 25 ~g~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~va~~lK~~L~~lp~p 70 (151)
T PF00620_consen 25 PGSSSEVQELRNKIDSGEPPNE--NLENYDVHDVASLLKRFLRELPEP 70 (151)
T ss_dssp S--HHHHHHHHHHHHTTTTCST--TGTTSTHHHHHHHHHHHHHHSSST
T ss_pred cCCHHHHHHHHHHHHhhhcccc--cccccChhhccccceeeeeccccc
Confidence 5666666666665544332111 335668999999998888765544
Done!