Query psy5101
Match_columns 111
No_of_seqs 107 out of 1026
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_H 20S proteasome; cell cy 100.0 1.1E-31 3.8E-36 184.9 13.2 110 2-111 25-134 (205)
2 3h4p_a Proteasome subunit beta 100.0 2E-31 6.8E-36 185.7 11.3 109 2-110 26-136 (219)
3 1ryp_L 20S proteasome; multica 100.0 3.9E-31 1.3E-35 183.1 12.4 109 2-110 25-134 (212)
4 3unf_H Proteasome subunit beta 100.0 3.8E-31 1.3E-35 186.1 12.4 108 2-110 25-132 (234)
5 1j2q_H Proteasome beta subunit 100.0 5.9E-31 2E-35 180.9 12.5 108 2-110 25-134 (202)
6 1iru_M 20S proteasome; cell cy 100.0 8E-31 2.7E-35 181.5 13.1 109 2-110 34-143 (213)
7 1ryp_M 20S proteasome; multica 100.0 9.8E-31 3.4E-35 182.4 13.1 109 2-110 34-144 (222)
8 1ryp_K 20S proteasome; multica 100.0 5E-31 1.7E-35 180.7 11.3 109 2-110 26-138 (198)
9 1iru_L 20S proteasome; cell cy 100.0 1.1E-30 3.7E-35 179.8 12.5 108 2-110 25-133 (204)
10 1ryp_I 20S proteasome; multica 100.0 1.1E-30 3.7E-35 182.2 12.2 108 2-110 25-132 (222)
11 1ryp_A 20S proteasome; multica 100.0 1.1E-30 3.9E-35 184.1 11.7 109 2-110 54-167 (243)
12 1yar_H Proteasome beta subunit 100.0 2.2E-30 7.6E-35 180.1 12.8 107 2-110 33-140 (217)
13 1ryp_H 20S proteasome; multica 100.0 3.4E-30 1.2E-34 177.5 13.2 109 2-111 34-142 (205)
14 1iru_I 20S proteasome; cell cy 100.0 3.7E-30 1.3E-34 180.9 12.8 108 2-110 25-132 (234)
15 1iru_D 20S proteasome; cell cy 100.0 2.9E-30 9.8E-35 182.7 12.0 109 2-110 53-166 (248)
16 3nzj_H Proteasome component PU 100.0 3.2E-30 1.1E-34 183.9 12.3 108 2-110 54-161 (261)
17 3nzj_K Proteasome component PR 100.0 3.3E-30 1.1E-34 186.0 12.3 109 2-110 100-209 (287)
18 1iru_G 20S proteasome; cell cy 100.0 5.2E-30 1.8E-34 182.0 12.9 106 5-110 60-170 (254)
19 1iru_C 20S proteasome; cell cy 100.0 9.5E-30 3.3E-34 181.2 14.2 110 2-111 56-170 (261)
20 1ryp_N 20S proteasome; multica 100.0 1.6E-30 5.6E-35 182.4 10.1 109 2-110 33-149 (233)
21 1yar_A Proteasome alpha subuni 100.0 7.5E-30 2.6E-34 178.9 13.1 108 2-110 58-170 (233)
22 1iru_K 20S proteasome; cell cy 100.0 3.6E-30 1.2E-34 176.9 11.2 109 2-110 26-137 (201)
23 1ryp_D 20S proteasome; multica 100.0 7.9E-30 2.7E-34 179.6 12.9 109 2-110 53-167 (241)
24 1iru_J 20S proteasome; cell cy 100.0 5.6E-30 1.9E-34 176.4 11.6 109 2-110 33-144 (205)
25 1ryp_C 20S proteasome; multica 100.0 1.1E-29 3.9E-34 179.0 12.6 107 4-110 58-169 (244)
26 1ryp_E 20S proteasome; multica 100.0 5.1E-30 1.7E-34 180.6 10.6 107 4-110 52-169 (242)
27 1iru_N 20S proteasome; cell cy 100.0 4.1E-30 1.4E-34 178.7 10.0 108 2-110 33-144 (219)
28 1iru_B 20S proteasome; cell cy 100.0 1.4E-29 4.8E-34 177.5 12.7 108 2-110 55-167 (233)
29 3unf_N Proteasome subunit beta 100.0 2E-29 6.9E-34 172.8 12.4 108 2-111 25-133 (199)
30 1iru_A 20S proteasome; cell cy 100.0 7.8E-30 2.7E-34 180.1 10.6 109 2-110 60-173 (246)
31 3h4p_A Proteasome subunit alph 100.0 1.2E-29 4.1E-34 181.1 11.0 108 2-110 62-174 (264)
32 1ryp_J 20S proteasome; multica 100.0 2.8E-29 9.7E-34 172.7 12.5 108 2-110 33-143 (204)
33 1ryp_F 20S proteasome; multica 100.0 2.7E-29 9.2E-34 176.2 12.3 104 6-110 57-165 (233)
34 1q5q_H Proteasome beta-type su 100.0 3.8E-29 1.3E-33 175.7 12.9 109 2-110 25-144 (235)
35 1iru_E 20S proteasome; cell cy 100.0 1.9E-29 6.4E-34 177.7 11.0 106 4-110 60-175 (241)
36 1g0u_M Proteasome component PR 100.0 1.4E-29 4.9E-34 180.8 10.6 110 2-111 66-183 (266)
37 3nzj_F Proteasome component C1 100.0 3.9E-29 1.3E-33 180.4 12.5 104 6-110 62-170 (288)
38 1ryp_G 20S proteasome; multica 100.0 4.6E-29 1.6E-33 176.2 12.4 103 7-110 59-166 (244)
39 1j2p_A Alpha-ring, proteasome 100.0 8.4E-29 2.9E-33 174.9 12.7 107 2-110 58-169 (246)
40 1iru_F 20S proteasome; cell cy 100.0 1.2E-28 4E-33 175.8 12.4 104 6-110 58-166 (263)
41 1ryp_B 20S proteasome; multica 100.0 2.7E-28 9.4E-33 172.6 12.2 109 2-110 55-169 (250)
42 1q5r_H Proteasome beta-type su 100.0 3.2E-28 1.1E-32 176.1 11.7 109 2-110 90-209 (294)
43 3mi0_A Proteasome subunit alph 100.0 7.7E-28 2.6E-32 170.5 11.8 105 6-110 48-161 (248)
44 2jay_A Proteasome; hydrolase; 100.0 6.5E-28 2.2E-32 174.3 11.1 109 2-110 82-201 (291)
45 1q5q_A Proteasome alpha-type s 99.9 6.8E-27 2.3E-31 166.4 11.7 105 6-110 48-161 (259)
46 1m4y_A ATP-dependent protease 99.9 1.9E-23 6.7E-28 140.2 9.5 99 2-111 25-128 (171)
47 1g3k_A ATP-dependent protease 99.9 3.2E-23 1.1E-27 139.6 9.2 99 2-111 25-129 (174)
48 2z3b_A ATP-dependent protease 99.9 5.6E-22 1.9E-26 134.3 9.9 98 3-111 32-134 (180)
49 1b66_A 6-pyruvoyl tetrahydropt 52.9 18 0.00062 22.6 3.8 46 23-68 62-117 (140)
50 3v5w_G G gamma-I, guanine nucl 40.2 25 0.00087 20.0 2.7 41 27-73 16-58 (77)
51 3mbh_A Putative phosphomethylp 37.8 26 0.00089 24.3 3.0 29 6-34 5-33 (291)
52 2oba_A Probable 6-pyruvoyl tet 36.8 55 0.0019 20.3 4.2 46 23-68 66-117 (138)
53 1ug8_A Poly(A)-specific ribonu 36.6 5.2 0.00018 23.4 -0.6 46 22-67 2-48 (87)
54 2zhy_A ATP:COB(I)alamin adenos 35.6 79 0.0027 20.7 5.0 38 29-66 124-161 (183)
55 1ns5_A Hypothetical protein YB 33.5 44 0.0015 21.4 3.3 34 46-82 74-107 (155)
56 3h74_A Pyridoxal kinase; PSI-I 32.8 16 0.00056 25.2 1.3 27 8-34 3-29 (282)
57 1y13_A PTPS, 6-pyruvoyl tetrah 31.5 53 0.0018 21.2 3.6 20 49-68 131-150 (181)
58 1wy1_A Hypothetical protein PH 31.5 74 0.0025 20.7 4.3 38 29-66 118-155 (172)
59 1wvt_A Hypothetical protein ST 31.5 73 0.0025 20.7 4.2 59 8-66 91-152 (172)
60 3ju3_A Probable 2-oxoacid ferr 30.8 14 0.00046 22.3 0.5 54 6-64 63-116 (118)
61 2g2d_A ATP:cobalamin adenosylt 30.7 1E+02 0.0036 20.3 4.9 59 8-66 108-171 (193)
62 2ah6_A BH1595, unknown conserv 30.4 77 0.0026 21.3 4.3 57 10-66 116-175 (208)
63 1to0_A Hypothetical UPF0247 pr 30.3 40 0.0014 21.9 2.8 35 46-82 78-112 (167)
64 2fu2_A Hypothetical protein SP 29.7 72 0.0024 18.7 3.7 51 28-78 42-94 (102)
65 3lx3_A 6-pyruvoyl tetrahydrobi 29.2 62 0.0021 21.0 3.6 19 50-68 131-149 (180)
66 3ke4_A Hypothetical cytosolic 29.0 70 0.0024 21.6 3.9 36 29-66 144-181 (213)
67 1rty_A YVQK protein; all alpha 29.0 86 0.0029 20.8 4.3 57 10-66 103-162 (193)
68 2g64_A Putative 6-pyruvoyl tet 28.5 39 0.0013 21.0 2.4 47 23-69 62-117 (140)
69 1woz_A 177AA long conserved hy 28.5 90 0.0031 20.4 4.3 37 29-66 117-155 (177)
70 1o6d_A Hypothetical UPF0247 pr 28.3 45 0.0015 21.6 2.7 33 47-82 74-106 (163)
71 1nog_A Conserved hypothetical 27.8 79 0.0027 20.6 3.9 36 29-66 118-155 (177)
72 2kep_A General secretion pathw 27.6 89 0.003 18.7 3.9 26 30-55 13-38 (110)
73 2nt8_A Cobalamin adenosyltrans 27.5 77 0.0026 21.6 3.9 55 10-66 140-199 (223)
74 3d7j_A Uncharacterized protein 27.4 69 0.0024 20.2 3.5 45 23-67 66-118 (152)
75 2o5a_A BH1328 protein; BHR21, 26.9 89 0.0031 19.2 3.8 35 8-42 27-61 (125)
76 3nbm_A PTS system, lactose-spe 26.5 87 0.003 18.5 3.7 24 18-43 10-33 (108)
77 3ci3_A Cobalamin adenosyltrans 26.5 84 0.0029 20.8 3.9 55 10-66 111-170 (194)
78 3ups_A Iojap-like protein; PSI 26.4 90 0.0031 19.5 3.8 35 8-42 43-77 (136)
79 2dj6_A Hypothetical protein PH 26.0 58 0.002 19.4 2.8 45 24-68 44-92 (115)
80 3b0c_W CENP-W, centromere prot 26.0 89 0.003 17.1 5.7 40 29-68 35-75 (76)
81 2gx5_A GTP-sensing transcripti 24.6 1.3E+02 0.0044 19.5 4.5 37 30-66 11-47 (170)
82 4fak_A Ribosomal RNA large sub 23.3 74 0.0025 20.5 3.1 34 46-81 82-115 (163)
83 2id1_A Hypothetical protein; a 23.0 1E+02 0.0034 19.1 3.5 35 8-42 27-61 (130)
84 2wqk_A 5'-nucleotidase SURE; S 22.1 77 0.0026 21.7 3.1 24 10-33 53-76 (251)
85 4ham_A LMO2241 protein; struct 20.8 69 0.0024 19.3 2.5 32 29-60 16-48 (134)
86 2idx_A COB(I)yrinic acid A,C-d 20.6 77 0.0026 21.0 2.8 14 53-66 155-168 (196)
87 2y6x_A PSB27, photosystem II 1 20.1 54 0.0019 20.0 1.8 44 26-69 13-56 (113)
No 1
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.98 E-value=1.1e-31 Score=184.90 Aligned_cols=110 Identities=61% Similarity=1.124 Sum_probs=105.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|++|++|++||..||++.+.+++|.++++|+++++++|+++.+|+++++++|.+++||++++||||||
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~p~~~~~lvaG~D 104 (205)
T 1iru_H 25 YIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWD 104 (205)
T ss_dssp EEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTTCCEEEEEEEEE
T ss_pred EEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCcCccEEEEEEEEe
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+++||+||.+||+|++.+++++++|+|+.|
T Consensus 105 ~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~ 134 (205)
T 1iru_H 105 PQEGGQVYSVPMGGMMVRQSFAIGGSGSSY 134 (205)
T ss_dssp TTTEEEEEEECTTSCCEECSEEEESGGGGG
T ss_pred CCCCCEEEEECCCCcEEecCEEEECCCHHH
Confidence 877999999999999999999999999864
No 2
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2e-31 Score=185.65 Aligned_cols=109 Identities=28% Similarity=0.395 Sum_probs=103.8
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|++||+|++||..||++.+.++++.+++.|+++++++|+++.+|+++++++|.++. ||++++|||||
T Consensus 26 ~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~lvaG~ 105 (219)
T 3h4p_a 26 LVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGY 105 (219)
T ss_dssp EEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCEEEEE
T ss_pred EeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999998865 99999999999
Q ss_pred cCCCCeEEEEecCCCceeeec-eEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQK-MAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~-~~~~Gsgs~ 110 (111)
|+++||+||.+||.|++.+++ +.++|+|+.
T Consensus 106 D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~ 136 (219)
T 3h4p_a 106 DLLEGAKLFSLDPLGGMNEEKTFTATGSGSP 136 (219)
T ss_dssp ETTTEEEEEEECSSCCEEECSSEEEESTTHH
T ss_pred eCCCCcEEEEECCCCceEecCCEEEEcCCHH
Confidence 987899999999999999989 999999974
No 3
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.97 E-value=3.9e-31 Score=183.08 Aligned_cols=109 Identities=25% Similarity=0.457 Sum_probs=104.2
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|++|++|++||..||++.+.++++.+++.|+++++++|+++.+|+++++.+|.+++ ||++++|||||
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~lvaG~ 104 (212)
T 1ryp_L 25 WVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGY 104 (212)
T ss_dssp EEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEEEEEE
T ss_pred eEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+++||+||.+||.|++.++++.++|+|+.
T Consensus 105 D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 134 (212)
T 1ryp_L 105 TRKEGPTIYYVDSDGTRLKGDIFCVGSGQT 134 (212)
T ss_dssp ETTTEEEEEEEETTCCEEECSEEEESTTHH
T ss_pred eCCCCCEEEEEcCCceeEecCCEEEcCCHH
Confidence 966799999999999999999999999975
No 4
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.97 E-value=3.8e-31 Score=186.05 Aligned_cols=108 Identities=27% Similarity=0.540 Sum_probs=103.8
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|+|||+|++||..||++.+.++++.++++|+++++++|+++.+|+++++++|.+++||++++||||||
T Consensus 25 ~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~llvaG~D 104 (234)
T 3unf_H 25 VVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD 104 (234)
T ss_dssp EEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEE
T ss_pred EeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcCCCccEEEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+ +||+||.+||.|++.++++.++|+|+.
T Consensus 105 ~-~gp~Ly~idp~G~~~~~~~~aiGsgs~ 132 (234)
T 3unf_H 105 L-NGPQLYEVHPHGSYSRLPFTALGSGQG 132 (234)
T ss_dssp T-TEEEEEEECTTSCEEECSEEEEETTHH
T ss_pred C-CCCEEEEECCCCCEEeccEEEEcCCch
Confidence 8 699999999999999999999999974
No 5
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.97 E-value=5.9e-31 Score=180.91 Aligned_cols=108 Identities=26% Similarity=0.426 Sum_probs=102.9
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-~p~~~~~lv~G~ 80 (111)
++.+++.+||++|++|++|++||..||++.+.++++.+++.|+++++++|+++.+|+++++.+|.+| +||++++|||||
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~lvaG~ 104 (202)
T 1j2q_H 25 FIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGI 104 (202)
T ss_dssp EEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEE
T ss_pred EEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999999876 499999999999
Q ss_pred cCCCCeEEEEecCCCceeeec-eEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQK-MAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~-~~~~Gsgs~ 110 (111)
|+ +||+||.+||.|++.+++ +.++|+|+.
T Consensus 105 D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~ 134 (202)
T 1j2q_H 105 DS-EGKSIYSIDPIGGAIEEKDIVATGSGSL 134 (202)
T ss_dssp ET-TEEEEEEECTTCCEEEESSEEEESTTHH
T ss_pred eC-CCCEEEEECCCCCeeecCCEEEEcCCHH
Confidence 98 789999999999999999 999999974
No 6
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.97 E-value=8e-31 Score=181.54 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=102.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-~p~~~~~lv~G~ 80 (111)
++.+++.+||++|+++++|++||..||++.|.++++.++++|+++++++|+++.+|+++++.+|..+ +||++++|||||
T Consensus 34 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~ 113 (213)
T 1iru_M 34 SIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGL 113 (213)
T ss_dssp EEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEE
T ss_pred EEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEE
Confidence 3556899999999999999999999999999999999999999999999999999999999998766 599999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|++++|+||.+||.|++.++++.++|+|+.
T Consensus 114 D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~ 143 (213)
T 1iru_M 114 DEEGKGAVYSFDPVGSYQRDSFKAGGSASA 143 (213)
T ss_dssp CTTSCEEEEEECTTSCEEEESEEEEETTHH
T ss_pred cCCCCEEEEEECCCCCEEECCEEEEeeCHH
Confidence 986679999999999999999999999974
No 7
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.97 E-value=9.8e-31 Score=182.40 Aligned_cols=109 Identities=25% Similarity=0.323 Sum_probs=103.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhcCC-ceeEEEEEee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEPLVYSGAKLFQELVYSYRD-SLTAGIICAG 79 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G 79 (111)
+|.+++.+||++|+++++|++||..||++.|.++++.++++|+++++ ++|+++.+|+++++++|.+|. ||++++||||
T Consensus 34 ~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG 113 (222)
T 1ryp_M 34 SINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAG 113 (222)
T ss_dssp EEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEE
T ss_pred EecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEE
Confidence 35678999999999999999999999999999999999999999999 999999999999999998764 9999999999
Q ss_pred ecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 80 WDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 80 ~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
||++++|+||.+||.|++.++++.++|+|+.
T Consensus 114 ~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~ 144 (222)
T 1ryp_M 114 LDEDGKGAVYSFDPVGSYEREQCRAGGAAAS 144 (222)
T ss_dssp ECTTSCEEEEEECTTSCEEEESEEEEETTHH
T ss_pred EcCCCCeEEEEECCCcCEEecCEEEEcCcHH
Confidence 9986679999999999999999999999974
No 8
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.97 E-value=5e-31 Score=180.70 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=102.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---CceeEEEEEe
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~---~p~~~~~lv~ 78 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|+++++++|+++.+|+++++.+|.++ +||++++|||
T Consensus 26 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lva 105 (198)
T 1ryp_K 26 SVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIG 105 (198)
T ss_dssp EEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEE
T ss_pred EEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999998874 4999999999
Q ss_pred eecC-CCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 79 GWDR-KKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 79 G~D~-~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||+ ++||+||.+||.|++.++++.++|+|+.
T Consensus 106 G~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~ 138 (198)
T 1ryp_K 106 GYDKKKNKPELYQIDYLGTKVELPYGAHGYSGF 138 (198)
T ss_dssp EEETTTTEEEEEEECTTCCEEECSEEECTTHHH
T ss_pred EEeCCCCCcEEEEECCCCCEEECCEEEEcccHH
Confidence 9997 5799999999999999999999999974
No 9
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.97 E-value=1.1e-30 Score=179.84 Aligned_cols=108 Identities=24% Similarity=0.447 Sum_probs=103.4
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|++|++|++||..||++.+.++++.+++.|+++++++|+++.+|+++++.+|.+|. |+++++|||||
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~lvaG~ 104 (204)
T 1iru_L 25 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 104 (204)
T ss_dssp EEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEEEEEE
T ss_pred EEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEEEEE
Confidence 46678999999999999999999999999999999999999999999999999999999999999886 89999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ +||+||.+||.|++.++++.++|+|+.
T Consensus 105 D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~ 133 (204)
T 1iru_L 105 DK-RGPGLYYVDSEGNRISGATFSVGSGSV 133 (204)
T ss_dssp CS-SSEEEEEEESSSCEEECSEEEESTTHH
T ss_pred eC-CCCEEEEECCCCcEEEeCCEEEEcCHH
Confidence 98 799999999999999999999999975
No 10
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.97 E-value=1.1e-30 Score=182.24 Aligned_cols=108 Identities=30% Similarity=0.513 Sum_probs=103.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|+||++|++||..||++.+.++++.++++|+++++++|+++.+++++++++|.+++||++++||||||
T Consensus 25 ~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D 104 (222)
T 1ryp_I 25 IVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD 104 (222)
T ss_dssp EEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEE
T ss_pred eeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCCeeEEEEEEe
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+ +||+||.+||.|++.++++.++|+|+.
T Consensus 105 ~-~gp~Ly~idp~G~~~~~~~~aiGsgs~ 132 (222)
T 1ryp_I 105 P-TGSHLFSIHAHGSTDVGYYLSLGSGSL 132 (222)
T ss_dssp T-TEEEEEEECTTSCEEECSEEEESTTHH
T ss_pred C-CCCEEEEECCCCCEEecCEEEECCCHH
Confidence 8 789999999999999999999999974
No 11
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.97 E-value=1.1e-30 Score=184.15 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=102.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH--Hhc---CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV--YSY---RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l--~~~---~~p~~~~~l 76 (111)
++.+++.+||++|++||+|++||..||+|.++++++.++++|++.++++|+++.+|+++++++ |.. .+||++++|
T Consensus 54 l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~l 133 (243)
T 1ryp_A 54 LLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILT 133 (243)
T ss_dssp TBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEE
T ss_pred ccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEE
Confidence 466788999999999999999999999999999999999999999999999999999999999 443 359999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+++||+||.+||.|++.++++.++|+|+.
T Consensus 134 vaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~ 167 (243)
T 1ryp_A 134 FVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQ 167 (243)
T ss_dssp EEEEETTTEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcH
Confidence 9999986899999999999999999999999974
No 12
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.97 E-value=2.2e-30 Score=180.07 Aligned_cols=107 Identities=19% Similarity=0.299 Sum_probs=102.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-~p~~~~~lv~G~ 80 (111)
++.+++.+||++|+++++|++||..||++.+.++++.+++.|+++++++|+++.+|+++++.+|.+| +||++++|||||
T Consensus 33 l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~ 112 (217)
T 1yar_H 33 FIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGI 112 (217)
T ss_dssp EEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEE
T ss_pred EEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEE
Confidence 5677899999999999999999999999999999999999999999999999999999999999876 499999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
| +||+||.+||.|++.++++.++|+|+.
T Consensus 113 D--~gp~Ly~idp~G~~~~~~~~aiGsgs~ 140 (217)
T 1yar_H 113 D--TAPHVFSIDAAGGSVEDIYASTGSGSP 140 (217)
T ss_dssp S--SSEEEEEECTTCCEEEESEEEESTTHH
T ss_pred C--CCCEEEEECCCCCeEecCEEEEcCCHH
Confidence 9 689999999999999999999999974
No 13
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.97 E-value=3.4e-30 Score=177.54 Aligned_cols=109 Identities=58% Similarity=0.972 Sum_probs=104.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|++++++ ++++.+|+++++.+|.++..|++++||||||
T Consensus 34 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D 112 (205)
T 1ryp_H 34 YIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDNLTAGIIVAGYD 112 (205)
T ss_dssp EEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEE
T ss_pred EEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEe
Confidence 567789999999999999999999999999999999999999999999 9999999999999999987899999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
+++||+||.+||.|++.++++.++|+|+.|
T Consensus 113 ~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~ 142 (205)
T 1ryp_H 113 DKNKGEVYTIPLGGSVHKLPYAIAGSGSTF 142 (205)
T ss_dssp TTTEEEEEEECTTSCCEEESEEEESGGGGG
T ss_pred cCCCcEEEEECCCccEEecCEEEEEecHHH
Confidence 877899999999999999999999999864
No 14
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.97 E-value=3.7e-30 Score=180.92 Aligned_cols=108 Identities=31% Similarity=0.573 Sum_probs=103.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|+++++++++++.+++++++.+|.+++||++++||||||
T Consensus 25 ~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~~~v~llvaG~D 104 (234)
T 1iru_I 25 VVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD 104 (234)
T ss_dssp BEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEC
T ss_pred eeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceeEEEEEEc
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+ +||+||.+||.|++.++++.++|+|+.
T Consensus 105 ~-~gp~Ly~idp~G~~~~~~~~aiGsgs~ 132 (234)
T 1iru_I 105 V-TGPHLYSIYPHGSTDKLPYVTMGSGSL 132 (234)
T ss_dssp S-SCEEEEEECTTSCEEECSEEEESTTHH
T ss_pred C-CCCEEEEECCCCCEEecCEEEECCchH
Confidence 8 789999999999999999999999974
No 15
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.97 E-value=2.9e-30 Score=182.68 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=102.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++..++.+||++|++||+|++||..||++.+.++++.++++|+++++++|+++.+|++++++++.++ |||++++|
T Consensus 53 l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~l 132 (248)
T 1iru_D 53 LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISAL 132 (248)
T ss_dssp SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEE
T ss_pred CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEE
Confidence 4566789999999999999999999999999999999999999999999999999999999998763 59999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+++||+||.+||.|++.++++.++|+|+.
T Consensus 133 vaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~ 166 (248)
T 1iru_D 133 IVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAK 166 (248)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcH
Confidence 9999965899999999999999999999999974
No 16
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.97 E-value=3.2e-30 Score=183.92 Aligned_cols=108 Identities=30% Similarity=0.513 Sum_probs=104.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|+|||+|++||..||++.++++++.++++|++.++++++++.+++++++.++++++||++++||||||
T Consensus 54 li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D 133 (261)
T 3nzj_H 54 IVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD 133 (261)
T ss_dssp EEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEE
T ss_pred eeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEe
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+ .||+||.+||+|++.++++.++|+|+.
T Consensus 134 ~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~ 161 (261)
T 3nzj_H 134 P-TGSHLFSIHAHGSTDVGYYLSLGSGSL 161 (261)
T ss_dssp T-TEEEEEEECTTSCEEECSEEEESTTHH
T ss_pred C-CCCEEEEECCCccEEecCeEEeccchH
Confidence 8 789999999999999999999999974
No 17
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.97 E-value=3.3e-30 Score=185.96 Aligned_cols=109 Identities=26% Similarity=0.458 Sum_probs=104.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
+|.+++.+||++|+++|+|+++|..||++.|.++++.++++|+++++++|+++.+|+++++++|.++. |+++++|||||
T Consensus 100 li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~ 179 (287)
T 3nzj_K 100 WVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGY 179 (287)
T ss_dssp EEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEE
T ss_pred eeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEE
Confidence 46788999999999999999999999999999999999999999999999999999999999999986 99999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+++||+||.+||.|++.++++.++|+|+.
T Consensus 180 D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~ 209 (287)
T 3nzj_K 180 TRKEGPTIYYVDSDGTRLKGDIFCVGSGQT 209 (287)
T ss_dssp ETTTEEEEEEEETTCCEEECSEEEESTTHH
T ss_pred cCCCCCEEEEECCCceEEEcCeEEEecchH
Confidence 976899999999999999999999999975
No 18
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.97 E-value=5.2e-30 Score=181.95 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=100.8
Q ss_pred cCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEEEee
Q psy5101 5 NRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAG 79 (111)
Q Consensus 5 ~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~lv~G 79 (111)
.++.+||++|++||+|++||..||++.|+++++.+++.|+++++++|+++.+|+++++++|.++ |||++++||||
T Consensus 60 ~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG 139 (254)
T 1iru_G 60 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS 139 (254)
T ss_dssp TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEE
T ss_pred cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEE
Confidence 4688999999999999999999999999999999999999999999999999999999998875 59999999999
Q ss_pred ecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 80 WDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 80 ~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
||+++||+||.+||.|++.++++.++|+|+.
T Consensus 140 ~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 170 (254)
T 1iru_G 140 YSVNDGAQLYMIDPSGVSYGYWGCAIGKARQ 170 (254)
T ss_dssp EETTTEEEEEEECTTCCEEEBSEEEESTTHH
T ss_pred EeCCCCcEEEEEcCCCCEEeeeeEEecCccH
Confidence 9965899999999999999999999999974
No 19
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.97 E-value=9.5e-30 Score=181.22 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=103.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++.+++.+||++|++||+|++||..||++.|+++++.++++|++.++++|+++.+|+++++++|.++ |||++++|
T Consensus 56 ~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~l 135 (261)
T 1iru_C 56 LDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLL 135 (261)
T ss_dssp BCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEE
T ss_pred cccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEE
Confidence 3455679999999999999999999999999999999999999999999999999999999998874 49999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
|||||+++||+||.+||.|++.++++.++|+|+.|
T Consensus 136 vaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~ 170 (261)
T 1iru_C 136 YIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAA 170 (261)
T ss_dssp EEEEETTTEEEEEEEETTTEEEECSEEEESTTTTH
T ss_pred EEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHH
Confidence 99999767999999999999999999999999864
No 20
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.97 E-value=1.6e-30 Score=182.36 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=103.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHhcC---CceeE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM-----ELGEEPLVYSGAKLFQELVYSYR---DSLTA 73 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~a~~ls~~l~~~~---~p~~~ 73 (111)
++.+++.+||++|++|++|++||..||++.|.+++|.+++.|++ +++++|+++.+|+++++.+|.+| +||++
T Consensus 33 ~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v 112 (233)
T 1ryp_N 33 LLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWN 112 (233)
T ss_dssp EEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred eeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceE
Confidence 56778999999999999999999999999999999999999999 89999999999999999998865 59999
Q ss_pred EEEEeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 74 GIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 74 ~~lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
++||||||+++||+||.+||.|++.++++.++|+|+.
T Consensus 113 ~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~ 149 (233)
T 1ryp_N 113 AIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH 149 (233)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred EEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHH
Confidence 9999999986699999999999999999999999875
No 21
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.97 E-value=7.5e-30 Score=178.89 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=102.4
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++.+++.+||++|++||+|++||..||++.+.++++.++++|+.+++++|+++.+|+++++++|.++ |||++++|
T Consensus 58 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~l 137 (233)
T 1yar_A 58 LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLI 137 (233)
T ss_dssp TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEE
T ss_pred cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEE
Confidence 4667889999999999999999999999999999999999999999999999999999999998765 49999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+ +||+||.+||.|++.++++.++|+|+.
T Consensus 138 vaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~ 170 (233)
T 1yar_A 138 FAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKD 170 (233)
T ss_dssp EEEECS-SCEEEEEECTTCCEEEBSEEEESTTHH
T ss_pred EEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcH
Confidence 999998 799999999999999999999999975
No 22
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.97 E-value=3.6e-30 Score=176.90 Aligned_cols=109 Identities=21% Similarity=0.327 Sum_probs=101.0
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-Hh--cCCceeEEEEEe
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV-YS--YRDSLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l-~~--~~~p~~~~~lv~ 78 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|+++++++|+++.+|+++++.+ +. .++||++++|||
T Consensus 26 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lva 105 (201)
T 1iru_K 26 VQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLA 105 (201)
T ss_dssp EEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred EEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEE
Confidence 566789999999999999999999999999999999999999999999999999999998865 44 235999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||+++||+||.+||.|++.++++.++|+|+.
T Consensus 106 G~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~ 137 (201)
T 1iru_K 106 GYDEHEGPALYYMDYLAALAKAPFAAHGYGAF 137 (201)
T ss_dssp EEETTTEEEEEEECTTCCEEECSEEEESHHHH
T ss_pred EEeCCCCeEEEEECCCcCeEECCEEEECCcHH
Confidence 99986799999999999999999999999874
No 23
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.97 E-value=7.9e-30 Score=179.63 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=102.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++.+++.+||++|++||+|++||..||++.+.++++.++++|+++++++|+++.+|+++++++|.++ |||++++|
T Consensus 53 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~l 132 (241)
T 1ryp_D 53 QDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTL 132 (241)
T ss_dssp BCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEE
T ss_pred ccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeE
Confidence 3455689999999999999999999999999999999999999999999999999999999999763 49999999
Q ss_pred EeeecCC-CCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRK-KGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~-~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||++ +||+||.+||.|++.++++.++|+|+.
T Consensus 133 vaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~ 167 (241)
T 1ryp_D 133 IAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSK 167 (241)
T ss_dssp EEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcH
Confidence 9999986 789999999999999999999999974
No 24
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.97 E-value=5.6e-30 Score=176.37 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=100.8
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|+++++++|+++.+|+++++.+|..|. ||++++|||||
T Consensus 33 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~ 112 (205)
T 1iru_J 33 QLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGL 112 (205)
T ss_dssp EEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEE
T ss_pred eEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999988765 99999999999
Q ss_pred cC-CCCeEEEEecCCCcee-eeceEEeecCCC
Q psy5101 81 DR-KKGGQVYCIPLGGMLM-RQKMAMGGSGST 110 (111)
Q Consensus 81 D~-~~gp~Ly~vd~~G~~~-~~~~~~~Gsgs~ 110 (111)
|+ ++||+||.+||.|++. ..+|.++|+|+.
T Consensus 113 D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~ 144 (205)
T 1iru_J 113 DPKTFKPFICSLDLIGCPMVTDDFVVSGTCAE 144 (205)
T ss_dssp CTTSCCEEEEEECTTCCEEECSSEEEEETTHH
T ss_pred eCCCCCeEEEEECCCCCccccCCeeEeeeCHH
Confidence 96 5799999999999984 467899999975
No 25
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.96 E-value=1.1e-29 Score=179.01 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=100.9
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEe
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICA 78 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~ 78 (111)
.+++.+||++|++||+|++||..||++.+.++++.++++|++.++++|+++.+|++++++++.+ +|||++++|||
T Consensus 58 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lva 137 (244)
T 1ryp_C 58 QDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYA 137 (244)
T ss_dssp STTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEE
T ss_pred CCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEE
Confidence 3788999999999999999999999999999999999999999999999999999999999664 45999999999
Q ss_pred eecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||+++||+||.+||.|++.++++.++|+|+.
T Consensus 138 G~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 169 (244)
T 1ryp_C 138 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTS 169 (244)
T ss_dssp EEETTTEEEEEEECTTCCEEEBSEEEESTTHH
T ss_pred EEcCCCCCEEEEECCCccEEeeeEEEECCCcH
Confidence 99955899999999999999999999999975
No 26
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.96 E-value=5.1e-30 Score=180.62 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=101.2
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----------CCcee
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----------RDSLT 72 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----------~~p~~ 72 (111)
.+++.+||++|++|++|++||..||++.++++++.++++|++.++++|+++.+|+++++++|.+ +|||+
T Consensus 52 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~ 131 (242)
T 1ryp_E 52 ESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFG 131 (242)
T ss_dssp CGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCS
T ss_pred cCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcce
Confidence 3678899999999999999999999999999999999999999999999999999999999874 66999
Q ss_pred EEEEEeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 73 AGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 73 ~~~lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+++||||||+++||+||.+||.|++.++++.++|+|+.
T Consensus 132 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 169 (242)
T 1ryp_E 132 VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSE 169 (242)
T ss_dssp EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCH
Confidence 99999999966899999999999999999999999974
No 27
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.96 E-value=4.1e-30 Score=178.69 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=101.9
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHhcC---CceeEEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM-ELGEEPLVYSGAKLFQELVYSYR---DSLTAGIIC 77 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~~~~~~~a~~ls~~l~~~~---~p~~~~~lv 77 (111)
++.+++.+||++|+++++|++||..||++.|.+++|.+++.|+. +++++|+++.+|+++++.+|.+| +||++++||
T Consensus 33 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lv 112 (219)
T 1iru_N 33 LARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVI 112 (219)
T ss_dssp EEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEE
Confidence 46678999999999999999999999999999999999999998 89999999999999999998764 599999999
Q ss_pred eeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 78 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 78 ~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
||||+ +||+||.+||.|++.++++.++|+|+.
T Consensus 113 aG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~ 144 (219)
T 1iru_N 113 GGYAD-GESFLGYVDMLGVAYEAPSLATGYGAY 144 (219)
T ss_dssp EEEET-TEEEEEEECSSCCEEECSEEECTTHHH
T ss_pred EEEEC-CCCEEEEECCCCCeEECCeEEECccHH
Confidence 99998 699999999999999999999999875
No 28
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.96 E-value=1.4e-29 Score=177.51 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=101.7
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|+++++++|+++.+|++++++++.++ +||++++|
T Consensus 55 l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~l 134 (233)
T 1iru_B 55 LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLL 134 (233)
T ss_dssp SBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEE
T ss_pred ccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEE
Confidence 5677889999999999999999999999999999999999999999999999999999999997653 49999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+ +||+||.+||.|++.++++.++|+|+.
T Consensus 135 vaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~ 167 (233)
T 1iru_B 135 ICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYV 167 (233)
T ss_dssp EEEECS-SSEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCH
Confidence 999995 789999999999999999999999974
No 29
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.96 E-value=2e-29 Score=172.83 Aligned_cols=108 Identities=49% Similarity=0.873 Sum_probs=101.2
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
++.+++.+||++|+||++|++||..||++.+.++++.+++.|+++++++|+++.+|+++++++|.+++||++++||||||
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D 104 (199)
T 3unf_N 25 AVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 104 (199)
T ss_dssp EEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTTTTCCCCEEEEEEE
T ss_pred eeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCceEEEEEEEEe
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCce-eeeceEEeecCCCC
Q psy5101 82 RKKGGQVYCIPLGGML-MRQKMAMGGSGSTY 111 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~-~~~~~~~~Gsgs~~ 111 (111)
+++||+||. |.|++ ...+++++|+|+.|
T Consensus 105 ~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~ 133 (199)
T 3unf_N 105 QREGGQVYG--TMGGMLIRQPFTIGGSGSSY 133 (199)
T ss_dssp TTTEEEEEE--CGGGCCEECSEEEEEGGGGG
T ss_pred CCCCcEEEE--ECCCceecCCEEEEccCHHH
Confidence 877899999 88886 55778888999864
No 30
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.96 E-value=7.8e-30 Score=180.13 Aligned_cols=109 Identities=24% Similarity=0.302 Sum_probs=101.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~l 76 (111)
++.+++.+||++|++|++|++||..||++.+.++++.++++|+++++++|+++.+|++++++++.+ .+||++++|
T Consensus 60 l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~l 139 (246)
T 1iru_A 60 LLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMI 139 (246)
T ss_dssp SBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEE
T ss_pred ccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEE
Confidence 567788999999999999999999999999999999999999999999999999999999986432 359999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+++||+||.+||.|++.+++++++|+|+.
T Consensus 140 vaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~ 173 (246)
T 1iru_A 140 LIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQT 173 (246)
T ss_dssp EEEEETTTEEEEEEECTTSCEEEBSEEEEETTHH
T ss_pred EEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcH
Confidence 9999986799999999999999999999999974
No 31
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.2e-29 Score=181.14 Aligned_cols=108 Identities=23% Similarity=0.352 Sum_probs=102.1
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++.+++.+||++|++||+|++||..||++.++++++.+++.|++.++++|+++.+|++++++++.++ +||++++|
T Consensus 62 li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~l 141 (264)
T 3h4p_A 62 LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLL 141 (264)
T ss_dssp TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEE
T ss_pred ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999998763 49999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|||||+ +||+||.+||.|++.+++++++|+|+.
T Consensus 142 vaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~ 174 (264)
T 3h4p_A 142 IAGIDK-NEARLFETDPSGALIEYKATAIGSGRP 174 (264)
T ss_dssp EEEEET-TEEEEEEECTTCCCEEESEEEESTTHH
T ss_pred EEEEeC-CcCEEEEECCCceEEecCeEEECCCHH
Confidence 999997 799999999999999999999999974
No 32
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.96 E-value=2.8e-29 Score=172.74 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=99.9
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-ceeEEEEEeee
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGW 80 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~-p~~~~~lv~G~ 80 (111)
++.+++.+||++|+ +++|++||..||++.+.++++.+++.|+++++++|+++.+|+++++.+|..+. ||++++|||||
T Consensus 33 ~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~ 111 (204)
T 1ryp_J 33 LGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGI 111 (204)
T ss_dssp EEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEE
T ss_pred EEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 35567999999999 99999999999999999999999999999999999999999999999988765 99999999999
Q ss_pred cC-CCCeEEEEecCCCcee-eeceEEeecCCC
Q psy5101 81 DR-KKGGQVYCIPLGGMLM-RQKMAMGGSGST 110 (111)
Q Consensus 81 D~-~~gp~Ly~vd~~G~~~-~~~~~~~Gsgs~ 110 (111)
|+ ++||+||.+||.|++. ..+|.++|+|+.
T Consensus 112 D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~ 143 (204)
T 1ryp_J 112 NSKSGKPFIAGFDLIGCIDEAKDFIVSGTASD 143 (204)
T ss_dssp CTTTCCEEEEEECTTCCEECCSSEEEEETTHH
T ss_pred eCCCCceEEEEECCCCCccccCceeEeccCHH
Confidence 96 5789999999999984 467899999975
No 33
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.96 E-value=2.7e-29 Score=176.16 Aligned_cols=104 Identities=13% Similarity=0.243 Sum_probs=98.5
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G~ 80 (111)
++.+||++|++||+|++||..||++.+.++++.++++|+++++++|+++.+|++++++++.+ +|||++++|||||
T Consensus 57 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~ 136 (233)
T 1ryp_F 57 SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGY 136 (233)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999653 4699999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ +||+||.+||+|++.+++++++|+|+.
T Consensus 137 D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~ 165 (233)
T 1ryp_F 137 DK-SGAHLLEFQPSGNVTELYGTAIGARSQ 165 (233)
T ss_dssp ET-TEEEEEEECTTSCEEEESEEEESTTHH
T ss_pred eC-CcCEEEEECCCCCeeeeeEEEECCCcH
Confidence 98 789999999999999999999999974
No 34
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.96 E-value=3.8e-29 Score=175.71 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=102.4
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc----CCceeEEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----RDSLTAGIIC 77 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~----~~p~~~~~lv 77 (111)
++.+++.+||++|+++++|++||..||++.|+++++.+++.|+++++++|+++.+|+++++++|.+ .+||++++||
T Consensus 25 l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lv 104 (235)
T 1q5q_H 25 LIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLL 104 (235)
T ss_dssp EEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEE
T ss_pred EEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEE
Confidence 567789999999999999999999999999999999999999999999999999999999999875 4699999999
Q ss_pred eeecCCCC-----eEEEEecCCCceeee--ceEEeecCCC
Q psy5101 78 AGWDRKKG-----GQVYCIPLGGMLMRQ--KMAMGGSGST 110 (111)
Q Consensus 78 ~G~D~~~g-----p~Ly~vd~~G~~~~~--~~~~~Gsgs~ 110 (111)
||||+++| |+||.+||.|++.++ ++.++|+|+.
T Consensus 105 aG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~ 144 (235)
T 1q5q_H 105 VGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSL 144 (235)
T ss_dssp EEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHH
T ss_pred EEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHH
Confidence 99998657 999999999999988 9999999975
No 35
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.96 E-value=1.9e-29 Score=177.73 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=100.3
Q ss_pred ccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc----------CCceeE
Q psy5101 4 ANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----------RDSLTA 73 (111)
Q Consensus 4 ~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~----------~~p~~~ 73 (111)
.+++.+||++|+++++|++||..||++.+.++++.+++.|+.+++++++++.+|++++++++.+ +|||++
T Consensus 60 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v 139 (241)
T 1iru_E 60 EPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGV 139 (241)
T ss_dssp CTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCE
T ss_pred CccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceE
Confidence 3788999999999999999999999999999999999999999999999999999999999665 569999
Q ss_pred EEEEeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 74 GIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 74 ~~lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
++||||||+ +||+||.+||.|++.++++.++|+|+.
T Consensus 140 ~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~ 175 (241)
T 1iru_E 140 ALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASE 175 (241)
T ss_dssp EEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcH
Confidence 999999995 899999999999999999999999975
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.96 E-value=1.4e-29 Score=180.82 Aligned_cols=110 Identities=19% Similarity=0.177 Sum_probs=103.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHhcC---CceeE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM-----ELGEEPLVYSGAKLFQELVYSYR---DSLTA 73 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~a~~ls~~l~~~~---~p~~~ 73 (111)
++.+++.+||++|+++|+|++||..||++.|++++|.+++.|++ .++++|+++.+|+++++++|.+| +||++
T Consensus 66 ~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v 145 (266)
T 1g0u_M 66 LLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWN 145 (266)
T ss_dssp EEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred eeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceE
Confidence 56778999999999999999999999999999999999999998 89999999999999999998865 59999
Q ss_pred EEEEeeecCCCCeEEEEecCCCceeeeceEEeecCCCC
Q psy5101 74 GIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111 (111)
Q Consensus 74 ~~lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~~ 111 (111)
++||||||+++||+||.+||.|++.++++.++|+|+.|
T Consensus 146 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~ 183 (266)
T 1g0u_M 146 AIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHM 183 (266)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHT
T ss_pred EEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHH
Confidence 99999999866999999999999999999999998754
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.96 E-value=3.9e-29 Score=180.44 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=98.9
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G~ 80 (111)
++.+||++|++||+|++||..||+|.|++++|.++++|++.++++|+++.+|+++++++|.+ .+||+|++|||||
T Consensus 62 ~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~ 141 (288)
T 3nzj_F 62 QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGV 141 (288)
T ss_dssp TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEE
T ss_pred cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999876 3499999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ +||+||.+||+|++.+++++++|+|+.
T Consensus 142 D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~ 170 (288)
T 3nzj_F 142 DK-NGAHLYMLEPSGSYWGYKGAATGKGRQ 170 (288)
T ss_dssp ET-TEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred eC-CCCEEEEECCCCCEEEcCEEEEcCcHH
Confidence 98 789999999999999999999999974
No 38
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.96 E-value=4.6e-29 Score=176.20 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=97.6
Q ss_pred CCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEeeec
Q psy5101 7 VADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWD 81 (111)
Q Consensus 7 ~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G~D 81 (111)
+.+||++|++||+|++||..||++.+.++++.++++|+++++++|+++.+|++++++++.+ .+||++++||+|||
T Consensus 59 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D 138 (244)
T 1ryp_G 59 KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD 138 (244)
T ss_dssp TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE
T ss_pred ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe
Confidence 3599999999999999999999999999999999999999999999999999999999765 35999999999999
Q ss_pred CCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 82 RKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 82 ~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
+ +||+||.+||.|++.++++.++|+|+.
T Consensus 139 ~-~gp~Ly~idp~G~~~~~~~~aiG~gs~ 166 (244)
T 1ryp_G 139 K-NGAHLYMLEPSGSYWGYKGAATGKGRQ 166 (244)
T ss_dssp T-TEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred C-CcCEEEEECCCCCEEEeeEEEECCChH
Confidence 7 799999999999999999999999974
No 39
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.96 E-value=8.4e-29 Score=174.91 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=100.5
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGII 76 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~l 76 (111)
++.+++.+||++|+|+|+|++||..||++.+.++++.++++|++.++++++++.+|++++++++.++ |||++++|
T Consensus 58 l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~l 137 (246)
T 1j2p_A 58 LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLL 137 (246)
T ss_dssp TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEE
T ss_pred ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEE
Confidence 4557789999999999999999999999999999999999999999999999999999999997653 49999999
Q ss_pred EeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 77 CAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 77 v~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
||||| +||+||.+||.|++.++++.++|+|+.
T Consensus 138 vaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~ 169 (246)
T 1j2p_A 138 IAGVN--EVPKLYETDPSGALLEYKATAIGMGRM 169 (246)
T ss_dssp EEEES--SSEEEEEECTTCCEEEBSEEEESTTHH
T ss_pred EEEEC--CCCEEEEECCCceEEeeeEEEECCCcH
Confidence 99999 689999999999999999999999975
No 40
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.96 E-value=1.2e-28 Score=175.83 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=98.7
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~-----~~p~~~~~lv~G~ 80 (111)
++.+||++|++||+|++||..||++.|+++++.+++.|++.++++|+++.+|+++++++|.+ +|||++++|||||
T Consensus 58 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~ 137 (263)
T 1iru_F 58 AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGY 137 (263)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEE
Confidence 47799999999999999999999999999999999999999999999999999999999853 4699999999999
Q ss_pred cCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 81 DRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 81 D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
|+ +||+||.+||+|++.+++++++|+|+.
T Consensus 138 D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~ 166 (263)
T 1iru_F 138 DD-MGPHIFQTCPSANYFDCRAMSIGARSQ 166 (263)
T ss_dssp ET-TEEEEEEECSSSCEEEESEEEESTTHH
T ss_pred cC-CCCEEEEECCCCCEEEeeEEEcCcccH
Confidence 98 789999999999999999999999974
No 41
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.96 E-value=2.7e-28 Score=172.62 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=100.6
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHH-HHHhhCCCCCHHHHHHHHHHHHHhcC-----CceeEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDL-QRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGI 75 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~~~~~~~~a~~ls~~l~~~~-----~p~~~~~ 75 (111)
++.+++.+||++|+++++|++||..||++.++++++.+++. |+..++.+++++.+++.++++++.++ +||++++
T Consensus 55 l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~ 134 (250)
T 1ryp_B 55 LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSL 134 (250)
T ss_dssp SBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEE
T ss_pred cccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEE
Confidence 56778999999999999999999999999999999999999 99999999999999888888775532 5999999
Q ss_pred EEeeecCCCCeEEEEecCCCceeeeceEEeecCCC
Q psy5101 76 ICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110 (111)
Q Consensus 76 lv~G~D~~~gp~Ly~vd~~G~~~~~~~~~~Gsgs~ 110 (111)
||||||+++||+||.+||.|++.++++.++|+|+.
T Consensus 135 lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 169 (250)
T 1ryp_B 135 LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSV 169 (250)
T ss_dssp EEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred EEEEEcCCCCcEEEEECCCCCEEeeceeEecCccH
Confidence 99999986799999999999999999999999974
No 42
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.95 E-value=3.2e-28 Score=176.12 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=102.2
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc----CCceeEEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----RDSLTAGIIC 77 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~----~~p~~~~~lv 77 (111)
++.+++.+||++|+++++|+++|..+|++.|+++++.+++.|+++++++|+++.+|+++++++|.+ .+||++++||
T Consensus 90 li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLv 169 (294)
T 1q5r_H 90 LIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLL 169 (294)
T ss_dssp EEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred eeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEE
Confidence 567889999999999999999999999999999999999999999999999999999999999875 3699999999
Q ss_pred eeecCCCC-----eEEEEecCCCceeee--ceEEeecCCC
Q psy5101 78 AGWDRKKG-----GQVYCIPLGGMLMRQ--KMAMGGSGST 110 (111)
Q Consensus 78 ~G~D~~~g-----p~Ly~vd~~G~~~~~--~~~~~Gsgs~ 110 (111)
+|||+++| |+||.+||.|++.++ ++.++|+|+.
T Consensus 170 aG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~ 209 (294)
T 1q5r_H 170 VGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSL 209 (294)
T ss_dssp EEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHH
T ss_pred EEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcH
Confidence 99998657 999999999999888 8999999975
No 43
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.95 E-value=7.7e-28 Score=170.52 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=96.2
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHH---H-hcCCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEPLVYSGAKLFQELV---Y-SYRDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~~a~~ls~~l---~-~~~~p~~~~~lv~G~ 80 (111)
++.+||++|+|||+|+++|+.+|++.|.+.++.++++|++.++ ++|+++.+|+++++.+ | +..+||+|++|||||
T Consensus 48 ~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~ 127 (248)
T 3mi0_A 48 RSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEV 127 (248)
T ss_dssp SSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEC
T ss_pred CCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEE
Confidence 5789999999999999999999999999999999999999999 9999999999999543 2 235699999999999
Q ss_pred cC---CCCeEEEEecCCCceee-eceEEeecCCC
Q psy5101 81 DR---KKGGQVYCIPLGGMLMR-QKMAMGGSGST 110 (111)
Q Consensus 81 D~---~~gp~Ly~vd~~G~~~~-~~~~~~Gsgs~ 110 (111)
|+ ++||+||++||+|++.+ +++.++|+||.
T Consensus 128 D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~ 161 (248)
T 3mi0_A 128 AHYGETKRPELYRITYDGSIADEPHFVVMGGTTE 161 (248)
T ss_dssp CCTTCCCCCEEEEECTTSCEEEESSEEEESSCHH
T ss_pred cCCCCCCCCEEEEECCCeEEeecccEEEECccHH
Confidence 97 47999999999999994 99999999974
No 44
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.95 E-value=6.5e-28 Score=174.26 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=100.3
Q ss_pred ccccCCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC----ceeEEEEE
Q psy5101 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD----SLTAGIIC 77 (111)
Q Consensus 2 ~i~~~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~----p~~~~~lv 77 (111)
+|.+++.+||++|++|++|++||..||++.++++++.+++.|++.++++|+++.+|+++++++|.++. ||+|++||
T Consensus 82 li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lv 161 (291)
T 2jay_A 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLL 161 (291)
T ss_dssp ---CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEE
T ss_pred eeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999998753 89999999
Q ss_pred eeecCCCC-----eEEEEecCCCcee--eeceEEeecCCC
Q psy5101 78 AGWDRKKG-----GQVYCIPLGGMLM--RQKMAMGGSGST 110 (111)
Q Consensus 78 ~G~D~~~g-----p~Ly~vd~~G~~~--~~~~~~~Gsgs~ 110 (111)
||||++++ |+||.+||.|++. ++++.++|+|+.
T Consensus 162 aG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~ 201 (291)
T 2jay_A 162 AGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201 (291)
T ss_dssp EEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHH
T ss_pred EEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHH
Confidence 99998656 9999999999988 899999999975
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.94 E-value=6.8e-27 Score=166.43 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=95.6
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHH---Hhc-CCceeEEEEEeee
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEPLVYSGAKLFQELV---YSY-RDSLTAGIICAGW 80 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~~a~~ls~~l---~~~-~~p~~~~~lv~G~ 80 (111)
++.+||++|++||+|++||..||++.|+++++.+++.|++.++ ++|+++.+|+++++++ |.+ .+||+|++|||||
T Consensus 48 ~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~ 127 (259)
T 1q5q_A 48 TALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEV 127 (259)
T ss_dssp SSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEC
T ss_pred CCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEE
Confidence 5789999999999999999999999999999999999999987 5999999999999953 544 4599999999999
Q ss_pred c--C-CCCeEEEEecCCCcee-eeceEEeecCCC
Q psy5101 81 D--R-KKGGQVYCIPLGGMLM-RQKMAMGGSGST 110 (111)
Q Consensus 81 D--~-~~gp~Ly~vd~~G~~~-~~~~~~~Gsgs~ 110 (111)
| + ++||+||.+||+|++. +++++++|+|+.
T Consensus 128 D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~ 161 (259)
T 1q5q_A 128 GRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTE 161 (259)
T ss_dssp CCSSCCCCCEEEEEETTSCEEEESSEEEESSSHH
T ss_pred cccCCCCCCEEEEECCCCceeeCCCEEEECCChH
Confidence 9 3 4899999999999998 789999999974
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.90 E-value=1.9e-23 Score=140.23 Aligned_cols=99 Identities=23% Similarity=0.246 Sum_probs=86.2
Q ss_pred ccccCCCCceEEe-cCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC--ceeEEEEEe
Q psy5101 2 YVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD--SLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~--p~~~~~lv~ 78 (111)
++.+++.+||++| ++|++|++||..||++.+.+++|.++++|+.+ .++.++++.+ .++.++. ||+++++++
T Consensus 25 ~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~-~~~~~~~~~~~~~~~lv~ 98 (171)
T 1m4y_A 25 TVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVELAK-DWRTDRVLRRLEALLLVA 98 (171)
T ss_dssp EEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHH-HHHHCTTGGGCCCEEEEE
T ss_pred EEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHH-HHHHhCCCCceEEEEEEE
Confidence 5778899999999 99999999999999999999999999999854 3777777755 6666653 799999888
Q ss_pred eecCCCCeEEEEecCCCceeeec--eEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQK--MAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~--~~~~Gsgs~~ 111 (111)
| ||+||.+||.|++.+++ +.++|+|+.|
T Consensus 99 --D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~ 128 (171)
T 1m4y_A 99 --D---KENIFIISGNGEVIQPDDDAAAIGSGGPY 128 (171)
T ss_dssp --C---SSCEEEECTTSCEECCSSSEEEESTTHHH
T ss_pred --c---CCEEEEECCCCCEEecCCCEEEECCcHHH
Confidence 5 79999999999999977 9999999753
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.89 E-value=3.2e-23 Score=139.60 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred ccccCCCCceEEe-cCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC--ceeEEEEEe
Q psy5101 2 YVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD--SLTAGIICA 78 (111)
Q Consensus 2 ~i~~~~~~Ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~--p~~~~~lv~ 78 (111)
++.+++.+||++| ++|++|++||..||++.|.+++|.++++|+. ++...+..+++.++.++. | ++++++
T Consensus 25 ~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~--~~~~l~ 96 (174)
T 1g3k_A 25 TVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTDRALRK--LEAMLI 96 (174)
T ss_dssp EEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGG--CCCEEE
T ss_pred eeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhccCcCc--ceEEEE
Confidence 5778999999999 9999999999999999999999999999985 456677778888877654 5 457888
Q ss_pred eecCCCCeEEEEecCCCceeeec---eEEeecCCCC
Q psy5101 79 GWDRKKGGQVYCIPLGGMLMRQK---MAMGGSGSTY 111 (111)
Q Consensus 79 G~D~~~gp~Ly~vd~~G~~~~~~---~~~~Gsgs~~ 111 (111)
|+| +|+||.+||+|++.+++ +.++|+|+.|
T Consensus 97 g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~ 129 (174)
T 1g3k_A 97 VAD---EKESLIITGIGDVVQPEEDQILAIGSGGNY 129 (174)
T ss_dssp EEC---SSCEEEEETTTEEECCCTTCEEEESTTHHH
T ss_pred EEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHH
Confidence 887 69999999999999977 9999999853
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.87 E-value=5.6e-22 Score=134.29 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=83.7
Q ss_pred cccCCCCceEEe-cCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc--CCceeEEEEEee
Q psy5101 3 VANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY--RDSLTAGIICAG 79 (111)
Q Consensus 3 i~~~~~~Ki~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~--~~p~~~~~lv~G 79 (111)
|.+++.+||++| ++|++|+++|.+||++.|.++++.++++|+ + +.++.+++ +++.++.+ .|||++++||+
T Consensus 32 i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~~-l~~~~~~~~~~rp~~~~~lva- 104 (180)
T 2z3b_A 32 VMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAAVE-LAKEWRSDKVLRKLEAMLIVM- 104 (180)
T ss_dssp EEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHHH-HHHHHHHCTTGGGCCCCEEEE-
T ss_pred EecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHHHH-HHHHHHhhhCcCcceEEEEEE-
Confidence 788999999999 999999999999999999999999999998 3 33444443 56666554 45999999999
Q ss_pred ecCCCCeEEEEecCCCceee--eceEEeecCCCC
Q psy5101 80 WDRKKGGQVYCIPLGGMLMR--QKMAMGGSGSTY 111 (111)
Q Consensus 80 ~D~~~gp~Ly~vd~~G~~~~--~~~~~~Gsgs~~ 111 (111)
| +|+||.+||.|++.+ +++.++|+|+.|
T Consensus 105 -d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~ 134 (180)
T 2z3b_A 105 -N---QDTLLLVSGTGEVIEPDDGILAIGSGGNY 134 (180)
T ss_dssp -C---SSCEEEECTTCCEECCSSSEEEESTTHHH
T ss_pred -c---CCeEEEECCCCcEEEeCCCEEEECCCHHH
Confidence 3 699999999999987 599999999853
No 49
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=52.92 E-value=18 Score=22.63 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=32.8
Q ss_pred cCcHHHHHHHHHHHHHHHH---HHHHhh-------CCCCCHHHHHHHHHHHHHhcC
Q psy5101 23 SGSAADTQAISDFVSYNLD---LQRMEL-------GEEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~---~~~~~~-------~~~~~~~~~a~~ls~~l~~~~ 68 (111)
.|+.-|...+.+.++..+. .|++.+ ...+|++.+|.+|-+.|....
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~~l 117 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLL 117 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHHhc
Confidence 5677788888888876332 233333 347899999999999987765
No 50
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=40.21 E-value=25 Score=19.98 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC--CceeE
Q psy5101 27 ADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR--DSLTA 73 (111)
Q Consensus 27 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~--~p~~~ 73 (111)
+..+..++.||.|+.. ..+.+...+..|.++..... .||..
T Consensus 16 ~q~rk~VeQLr~Ea~i------~RikVSqaaadL~~yc~~~~~~DpLl~ 58 (77)
T 3v5w_G 16 AQARKLVEQLKMEANI------DRIKVSKAAADLMAYCEAHAKEDPLLT 58 (77)
T ss_dssp HHHHHHHHHHHHHHSS------CCCCHHHHHHHHHHHHHHSGGGCTTTS
T ss_pred HHHHHHHHHHHHHhcc------chhhHHHHHHHHHHHHHhcCCCCCCcC
Confidence 5566677777776643 35778888877777766543 37653
No 51
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=37.78 E-value=26 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=24.7
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHH
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISD 34 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~ 34 (111)
...+||.-|.++...|.+|+.||...+..
T Consensus 5 ~~m~~vL~I~g~d~~GgaGi~adl~~~~a 33 (291)
T 3mbh_A 5 NKVKKIAAVHDLSGMGRVSLTVVIPILSS 33 (291)
T ss_dssp CCCCEEEEECCEEEESSCTHHHHHHHHHH
T ss_pred cccCcEEEEeCCCCCCcHHHHHHHHHHHH
Confidence 34578999999999999999999988763
No 52
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=36.85 E-value=55 Score=20.34 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=31.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHH--HHhhC----CCCCHHHHHHHHHHHHHhcC
Q psy5101 23 SGSAADTQAISDFVSYNLDLQ--RMELG----EEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~--~~~~~----~~~~~~~~a~~ls~~l~~~~ 68 (111)
.|..-|...+.+.++..+..+ ++.+. ..+|++.+|.+|.+.|....
T Consensus 66 ~GmV~Df~~lk~~~~~vi~~lDH~~Lndv~~~~~pTaEnlA~~i~~~L~~~l 117 (138)
T 2oba_A 66 TGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLL 117 (138)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHTTSBGGGSTTCSSCCHHHHHHHHHHHHGGGC
T ss_pred CCEEEeHHHHHHHHHHHHHhCCCccchhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 456667877777776644332 22222 46899999999999987755
No 53
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=36.61 E-value=5.2 Score=23.42 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=37.0
Q ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhc
Q psy5101 22 RSGSAADTQAISDFVSYNLDLQRMELG-EEPLVYSGAKLFQELVYSY 67 (111)
Q Consensus 22 ~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~~a~~ls~~l~~~ 67 (111)
+...+.|-+.+++.+-..++.+-.... .++.+.-+-.++|+++|+-
T Consensus 2 ~i~ip~e~k~~id~i~~kIe~FL~s~~~~~l~l~pCN~f~RkLIYQ~ 48 (87)
T 1ug8_A 2 SSGSSGDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQT 48 (87)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCSSCCEEECCCCCSHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHHhCCCCCceecCCchHHHHHHHHHH
Confidence 455678889999999999998877666 4477777888999999875
No 54
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=35.62 E-value=79 Score=20.74 Aligned_cols=38 Identities=3% Similarity=-0.043 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
+++++++++..+..-.........+-...|.||++++.
T Consensus 124 aRtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFv 161 (183)
T 2zhy_A 124 CRTVCRRAERSIVALGASEPLNAAPRRYVNRLSDLLFV 161 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 45566666555443332333344566788999999864
No 55
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=33.49 E-value=44 Score=21.39 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=26.2
Q ss_pred hhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeecC
Q psy5101 46 ELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDR 82 (111)
Q Consensus 46 ~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D~ 82 (111)
..|+.++.+++|++|.+..... + -+.++|||=|-
T Consensus 74 ~~Gk~~sS~~fA~~l~~~~~~g-~--~i~FvIGG~~G 107 (155)
T 1ns5_A 74 IPGKPWDTPQLAAELERWKLDG-R--DVSLLIGGPEG 107 (155)
T ss_dssp EEEECCCHHHHHHHHHHHHHHC-S--CEEEEECBTTB
T ss_pred CCCCcCCHHHHHHHHHHHHhcC-C--eEEEEEECCCC
Confidence 3468899999999999876555 2 47788988653
No 56
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=32.79 E-value=16 Score=25.24 Aligned_cols=27 Identities=4% Similarity=-0.064 Sum_probs=23.4
Q ss_pred CCceEEecCcEEEEecCcHHHHHHHHH
Q psy5101 8 ADKLTRVTDNIYCCRSGSAADTQAISD 34 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~aD~~~l~~ 34 (111)
.+||.-|.++...|.+|+.||...+..
T Consensus 3 ~~~vL~I~~~~~~GgaGi~Adl~~~~a 29 (282)
T 3h74_A 3 LSTMLVAEDLSAVGGISLSSALPVLTA 29 (282)
T ss_dssp CEEEEEEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEeCcCCCChHHHHHHHHHHHH
Confidence 468899999999999999999988765
No 57
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2
Probab=31.51 E-value=53 Score=21.20 Aligned_cols=20 Identities=0% Similarity=-0.155 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHhcC
Q psy5101 49 EEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 49 ~~~~~~~~a~~ls~~l~~~~ 68 (111)
..+|++.+|.++.+.|....
T Consensus 131 ~~pTaEnlA~~i~~~L~~~L 150 (181)
T 1y13_A 131 KHSSTEEIGQYILNQLIEEM 150 (181)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999886643
No 58
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=31.47 E-value=74 Score=20.65 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
+++++++++..+............+-...|.||+++|.
T Consensus 118 aRtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFv 155 (172)
T 1wy1_A 118 CRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFL 155 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45556655554443322222333445678889998864
No 59
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=31.46 E-value=73 Score=20.70 Aligned_cols=59 Identities=7% Similarity=-0.008 Sum_probs=30.4
Q ss_pred CCceEEecCcEEEEecCcHHH---HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 8 ADKLTRVTDNIYCCRSGSAAD---TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~aD---~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
.+++-++..+|.=|.+-.+|- +++++++++..+............+-...|.||+++|.
T Consensus 91 ~~~l~pl~~FILPgg~~~aA~Lh~aRtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFv 152 (172)
T 1wvt_A 91 SKELEPLRNFVLPGGHIASSFLHLARAVCRRAERSVVTLLKESKAKEVHAKYLNRLSSLLFV 152 (172)
T ss_dssp HTTSCCCCSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 345556666665343322222 34555555554443322222233345678889999864
No 60
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=30.84 E-value=14 Score=22.33 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=33.4
Q ss_pred CCCCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy5101 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV 64 (111)
Q Consensus 6 ~~~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l 64 (111)
++.++|.-+.++. ..|+.++.+.-... ..........|++++++.+.+.+.+.+
T Consensus 63 ~~~~~vvvvE~~~---~G~l~~~i~~~~~~--~~~~~i~~~~G~~~~~~ei~~~i~~~~ 116 (118)
T 3ju3_A 63 SSANLVIDVESNY---TAQAAQMIKLYTGI--DIKNKILKYNGRHMTEDEILKSAKEIL 116 (118)
T ss_dssp TTCSCCCCCCCCC---CCCHHHHHHHHHCC--CCCCCCCCBTTBCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCC---CCcHHHHHHHHcCC--CceeEEeeeCCeeCCHHHHHHHHHHHh
Confidence 4567888888875 34666655542221 111112223579999999999998876
No 61
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=30.65 E-value=1e+02 Score=20.32 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=32.9
Q ss_pred CCceEEecCcEEEEecCcHH---HHHHHHHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHh
Q psy5101 8 ADKLTRVTDNIYCCRSGSAA---DTQAISDFVSYNLDLQRMELGE--EPLVYSGAKLFQELVYS 66 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~a---D~~~l~~~~~~~~~~~~~~~~~--~~~~~~~a~~ls~~l~~ 66 (111)
.+++-++..+|.=|.+-.+| =+++++++++..+.......+. ...+-...|.||++|+.
T Consensus 108 ~~~l~pl~~FILPGG~~~aA~LH~aRtv~RRAER~~v~l~~~~g~~v~~~~~~yLNRLSD~lFv 171 (193)
T 2g2d_A 108 NAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFI 171 (193)
T ss_dssp HTTCCCCSSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCSHHHHHHHHHHHHHHH
T ss_pred HhhCCCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34555666666534332222 2455666665555444333223 34456788999999875
No 62
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=30.43 E-value=77 Score=21.32 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=29.5
Q ss_pred ceEEecCcEEEEecCcHH---HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 10 KLTRVTDNIYCCRSGSAA---DTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~a---D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
++-++..+|.=|.+-.+| =+++++++++..+............+-...|.||++|+.
T Consensus 116 ~l~pl~~FILPGG~~~aA~LHvaRTv~RRAER~~v~L~~~~~v~~~~l~YLNRLSD~LFv 175 (208)
T 2ah6_A 116 EAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFA 175 (208)
T ss_dssp HSCCCCSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 445566666534322222 245566666555443322222223344678899999864
No 63
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=30.31 E-value=40 Score=21.88 Aligned_cols=35 Identities=11% Similarity=-0.039 Sum_probs=25.7
Q ss_pred hhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeecC
Q psy5101 46 ELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDR 82 (111)
Q Consensus 46 ~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D~ 82 (111)
..|+.++.+++|++|.+......+ -+.++|||=|-
T Consensus 78 ~~Gk~~sS~~fA~~l~~~~~~G~~--~i~FvIGGa~G 112 (167)
T 1to0_A 78 IEGKMKTSEELADTIDKLATYGKS--KVTFVIGGSLG 112 (167)
T ss_dssp EEEEECCHHHHHHHHHHHHTTTCC--EEEEEECCSSC
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCc--eEEEEEECCCC
Confidence 346789999999999987644322 47788988654
No 64
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=29.73 E-value=72 Score=18.72 Aligned_cols=51 Identities=6% Similarity=0.130 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHhcCCceeEEEEEe
Q psy5101 28 DTQAISDFVSYNLDLQRMELGEEPL--VYSGAKLFQELVYSYRDSLTAGIICA 78 (111)
Q Consensus 28 D~~~l~~~~~~~~~~~~~~~~~~~~--~~~~a~~ls~~l~~~~~p~~~~~lv~ 78 (111)
+.+.++-.|...+..|-..++..+| +..+.+++......+|.-..++.+++
T Consensus 42 n~~~va~kL~~~i~~Yll~h~~~~P~sl~~L~~~i~k~~~kyrg~~~~~~~l~ 94 (102)
T 2fu2_A 42 MSSLLATKIDSLINQYILTHQFDAPKSIFDLSRLVKTKASHYKGTAISAIMLG 94 (102)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHC---------------
T ss_pred CHHHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788777765544 44677777776666665444444443
No 65
>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS, metal-binding, tetrahydrobiopterin biosynthesis, folate biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} SCOP: d.96.1.2 PDB: 2a0s_A* 3m0n_A* 3lze_A*
Probab=29.17 E-value=62 Score=21.01 Aligned_cols=19 Identities=0% Similarity=-0.260 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q psy5101 50 EPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 50 ~~~~~~~a~~ls~~l~~~~ 68 (111)
.+|++.+|.++.+.|....
T Consensus 131 npTaEnlA~~i~~~L~~~L 149 (180)
T 3lx3_A 131 HSSTEEIGLYILNQLIEEI 149 (180)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 6899999999999886543
No 66
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=29.04 E-value=70 Score=21.63 Aligned_cols=36 Identities=0% Similarity=-0.042 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHh
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLV--YSGAKLFQELVYS 66 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~a~~ls~~l~~ 66 (111)
+++++++++..+..- ....++++ -...|.||++|+.
T Consensus 144 ARTV~RRAER~~v~L--~~~~~v~~~~l~YLNRLSD~LFv 181 (213)
T 3ke4_A 144 ARTVVRRAERSIVSL--QKEVKINEVVLKYVNRLSDYLFA 181 (213)
T ss_dssp HHHHHHHHHHHHHHH--HTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhhcCCCHHHHHHHhHHHHHHHH
Confidence 455556555544432 23334544 4578889999864
No 67
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=28.96 E-value=86 Score=20.78 Aligned_cols=57 Identities=9% Similarity=-0.024 Sum_probs=28.5
Q ss_pred ceEEecCcEEEEecCcHH---HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 10 KLTRVTDNIYCCRSGSAA---DTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~a---D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
++-++..+|.=|.+-.+| =+++++++++..+............+-...|.||++|+.
T Consensus 103 ~l~pl~~FILPGG~~~aA~LH~aRtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~LFv 162 (193)
T 1rty_A 103 EAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKSEEIHETVLRYLNRLSDYFFA 162 (193)
T ss_dssp HSCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 344455555433322222 245566666555443322222233344678889999864
No 68
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2
Probab=28.53 E-value=39 Score=21.02 Aligned_cols=47 Identities=21% Similarity=0.010 Sum_probs=31.3
Q ss_pred cCcHHHHHHHHHHHHHHHH--HHHHhh-------CCCCCHHHHHHHHHHHHHhcCC
Q psy5101 23 SGSAADTQAISDFVSYNLD--LQRMEL-------GEEPLVYSGAKLFQELVYSYRD 69 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~--~~~~~~-------~~~~~~~~~a~~ls~~l~~~~~ 69 (111)
.|..-|...+.+.++.-.. .|++.+ ...+|++.+|.+|.+.|.....
T Consensus 62 ~Gmv~Df~~lk~~~~~i~~~lDH~~Ln~dv~~f~~~~pT~EnlA~~i~~~l~~~l~ 117 (140)
T 2g64_A 62 SGMVYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMS 117 (140)
T ss_dssp TCCSSCHHHHHHHHHHHHHTTTTEEHHHHCGGGGTSCCCHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEHHHHHHHHHHHHhcCCCcccchhhcccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 5666677777777762222 222222 3478999999999999877653
No 69
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=28.52 E-value=90 Score=20.35 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHh
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPL--VYSGAKLFQELVYS 66 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~--~~~~a~~ls~~l~~ 66 (111)
+++++++++..+...... ..+++ +-...|.||++++.
T Consensus 117 aRtv~RRAER~~v~l~~~-~~~v~~~~~~yLNRLSD~lFv 155 (177)
T 1woz_A 117 TRSVARRVERNAVKYTKE-LPEINRMIIVYLNRLSSLLFA 155 (177)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHH
Confidence 455566555554433222 13344 44678889999864
No 70
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=28.25 E-value=45 Score=21.55 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=25.3
Q ss_pred hCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeecC
Q psy5101 47 LGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDR 82 (111)
Q Consensus 47 ~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D~ 82 (111)
.|+.++.+++|++|.+.....+ -+.++|||=|-
T Consensus 74 ~Gk~~sS~~fA~~l~~~~~~G~---~i~FvIGGa~G 106 (163)
T 1o6d_A 74 RGEEVSSEEFADFLKDLEMKGK---DITILIGGPYG 106 (163)
T ss_dssp EEEECCHHHHHHHHHHHHHHTC---CEEEEECCTTC
T ss_pred CCCcCCHHHHHHHHHHHHhcCC---eEEEEEECCCC
Confidence 4678999999999998765552 47788888653
No 71
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=27.84 E-value=79 Score=20.65 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHh
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEPLV--YSGAKLFQELVYS 66 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~a~~ls~~l~~ 66 (111)
+++++++++..+..... ..++++ -...|.||++|+.
T Consensus 118 aRtv~RRAER~~v~l~~--~~~v~~~~~~yLNRLSD~lFv 155 (177)
T 1nog_A 118 ARAVSRRLERRIVAASK--LTEINKNVLIYANRLSSILFM 155 (177)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHH
Confidence 34555555554433322 234444 4678889998864
No 72
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=27.60 E-value=89 Score=18.66 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHH
Q psy5101 30 QAISDFVSYNLDLQRMELGEEPLVYS 55 (111)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (111)
+.-++.|+..+++|+..+++-++.++
T Consensus 13 ~a~i~~l~~Al~~Y~lD~G~YPtt~q 38 (110)
T 2kep_A 13 KGDIKAIAAALDMYKLDNFAYPSTQQ 38 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCTTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHH
Confidence 34456678899999999998887654
No 73
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=27.55 E-value=77 Score=21.58 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=28.2
Q ss_pred ceEEecCcEEEEecCcHH---HHHHHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHh
Q psy5101 10 KLTRVTDNIYCCRSGSAA---DTQAISDFVSYNLDLQRMELGEEPL--VYSGAKLFQELVYS 66 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~a---D~~~l~~~~~~~~~~~~~~~~~~~~--~~~~a~~ls~~l~~ 66 (111)
++-++..+|.=|.+-.+| =+++++++++..+..... ..+++ +-...|.||++|+.
T Consensus 140 ~lppl~~FILPGGs~~aA~LHvaRTv~RRAER~~v~L~~--~~~v~~~~l~YLNRLSD~LFv 199 (223)
T 2nt8_A 140 VVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMR--EEQINQDVLIFINRLSDYFFA 199 (223)
T ss_dssp HSCCCSSCEESCSSHHHHHHHHHHHHHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHH
Confidence 444555555433322222 234555555554433322 23444 44678889999864
No 74
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor}
Probab=27.44 E-value=69 Score=20.21 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=30.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHH--HHhh------CCCCCHHHHHHHHHHHHHhc
Q psy5101 23 SGSAADTQAISDFVSYNLDLQ--RMEL------GEEPLVYSGAKLFQELVYSY 67 (111)
Q Consensus 23 sG~~aD~~~l~~~~~~~~~~~--~~~~------~~~~~~~~~a~~ls~~l~~~ 67 (111)
.|+.-|...+.+.++.-+..+ ++.+ ...+|++.+|.++-+.|...
T Consensus 66 ~GmVvDF~~lK~~ik~i~~~lDH~~Ln~~p~f~~~npTaEnlA~~i~~~L~~~ 118 (152)
T 3d7j_A 66 DNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAER 118 (152)
T ss_dssp TSSSSCHHHHHHHHHHHHHTTTTEEGGGCGGGTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHhcCCcccccccccCCCCCCHHHHHHHHHHHHHHh
Confidence 466778888888777644322 2222 24689999999998888653
No 75
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=26.94 E-value=89 Score=19.19 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHH
Q psy5101 8 ADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDL 42 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~ 42 (111)
.+.+-.+.|+.++|..-...-.+.+++.++..+..
T Consensus 27 v~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~ 61 (125)
T 2o5a_A 27 MKGISLIADFFLICHGNSEKQVQAIAHELKKVAQE 61 (125)
T ss_dssp CBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999988887653
No 76
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=26.55 E-value=87 Score=18.52 Aligned_cols=24 Identities=8% Similarity=0.337 Sum_probs=17.9
Q ss_pred EEEEecCcHHHHHHHHHHHHHHHHHH
Q psy5101 18 IYCCRSGSAADTQAISDFVSYNLDLQ 43 (111)
Q Consensus 18 i~~~~sG~~aD~~~l~~~~~~~~~~~ 43 (111)
+++|.+|..+-. |++.++..++.+
T Consensus 10 lL~C~aGmSTsl--lv~km~~~a~~~ 33 (108)
T 3nbm_A 10 LVLCAGSGTSAQ--LANAINEGANLT 33 (108)
T ss_dssp EEEESSSSHHHH--HHHHHHHHHHHH
T ss_pred EEECCCCCCHHH--HHHHHHHHHHHC
Confidence 567778876554 888898888765
No 77
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=26.49 E-value=84 Score=20.83 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=27.2
Q ss_pred ceEEecCcEEEEecCcHH---HHHHHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHh
Q psy5101 10 KLTRVTDNIYCCRSGSAA---DTQAISDFVSYNLDLQRMELGEEPL--VYSGAKLFQELVYS 66 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~a---D~~~l~~~~~~~~~~~~~~~~~~~~--~~~~a~~ls~~l~~ 66 (111)
++-++..+|.=|.+-.+| =+++++++++..+.... ...+++ +-...|.||++|+.
T Consensus 111 ~l~pl~~FILPGG~~~aA~LH~aRtv~RRAER~~v~l~--~~~~v~~~~~~yLNRLSD~LFv 170 (194)
T 3ci3_A 111 VVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLM--REEQINQDVLIFINRLSDYFFA 170 (194)
T ss_dssp HSCCCSSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHH
Confidence 344455555433322222 23455555544443332 223444 44678889999864
No 78
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=26.43 E-value=90 Score=19.51 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHH
Q psy5101 8 ADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDL 42 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~ 42 (111)
...+-.+.|+.++|..-.....+.+++.++..+..
T Consensus 43 v~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~ 77 (136)
T 3ups_A 43 LAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKA 77 (136)
T ss_dssp CTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 44556778999999999999999999988877653
No 79
>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), structural G NPPSFA; 2.10A {Pyrococcus horikoshii} PDB: 2dtt_A*
Probab=26.03 E-value=58 Score=19.37 Aligned_cols=45 Identities=18% Similarity=-0.023 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHHHHHHH--HHhh--CCCCCHHHHHHHHHHHHHhcC
Q psy5101 24 GSAADTQAISDFVSYNLDLQ--RMEL--GEEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 24 G~~aD~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~a~~ls~~l~~~~ 68 (111)
|..-|...+.+.++.-...+ ++.+ =..+|++.+|.++.+.+....
T Consensus 44 gmv~Df~~lk~~~~~i~~~lDH~~Ln~v~~~pT~E~lA~~i~~~l~~~l 92 (115)
T 2dj6_A 44 GYVMDFLELRKIVEEITKELDHRNLNNIFENPTTENIALWIGERIRDKL 92 (115)
T ss_dssp TBSSCHHHHHHHHHHHHTTTTTSBHHHHCSSCCHHHHHHHHHHHHHHHC
T ss_pred CceeeHHHHHHHHHHHHHcCCCcchhheECCCCHHHHHHHHHHHHHHhc
Confidence 55667777777666522211 1111 167899999999999987755
No 80
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=25.98 E-value=89 Score=17.14 Aligned_cols=40 Identities=3% Similarity=-0.175 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHhcC
Q psy5101 29 TQAISDFVSYNLDLQRM-ELGEEPLVYSGAKLFQELVYSYR 68 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~a~~ls~~l~~~~ 68 (111)
+..+++++..++..... ...+.++.+.+-.-+..+|..+|
T Consensus 35 ~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k~~ 75 (76)
T 3b0c_W 35 FLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKKSR 75 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 34466666666666544 44667899999999999888776
No 81
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=24.64 E-value=1.3e+02 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q psy5101 30 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS 66 (111)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~ 66 (111)
..|.++.|+-...-+...+.+++...+|+.|++.+..
T Consensus 11 ~~LL~KtRkIN~lLq~~~~~~v~f~eia~vLs~vL~~ 47 (170)
T 2gx5_A 11 MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDS 47 (170)
T ss_dssp HHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC
Confidence 4577777777777767778899999999999999754
No 82
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=23.34 E-value=74 Score=20.52 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=25.0
Q ss_pred hhCCCCCHHHHHHHHHHHHHhcCCceeEEEEEeeec
Q psy5101 46 ELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 81 (111)
Q Consensus 46 ~~~~~~~~~~~a~~ls~~l~~~~~p~~~~~lv~G~D 81 (111)
..|+.++.+++|++|.+...... --+.++|||=|
T Consensus 82 ~~Gk~~sS~~fA~~l~~~~~~g~--~~i~FvIGG~~ 115 (163)
T 4fak_A 82 IQGKMLSSEGLAQELNQRMTQGQ--SDFVFVIGGSN 115 (163)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTC--CEEEEEECBTT
T ss_pred CCCCcCCHHHHHHHHHHHHhcCC--cceEEEEECCC
Confidence 34678999999999988765543 24778888855
No 83
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=23.02 E-value=1e+02 Score=19.12 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCceEEecCcEEEEecCcHHHHHHHHHHHHHHHHH
Q psy5101 8 ADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDL 42 (111)
Q Consensus 8 ~~Ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~ 42 (111)
.+.+..+.|+.++|..-...-.+.+++.++..+..
T Consensus 27 v~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~ 61 (130)
T 2id1_A 27 TSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKE 61 (130)
T ss_dssp GGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999988888753
No 84
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=22.05 E-value=77 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=20.1
Q ss_pred ceEEecCcEEEEecCcHHHHHHHH
Q psy5101 10 KLTRVTDNIYCCRSGSAADTQAIS 33 (111)
Q Consensus 10 Ki~~i~~~i~~~~sG~~aD~~~l~ 33 (111)
++.++++.-+.+++|+.+||-.+.
T Consensus 53 ~~~~~~~~~~~~v~GTPaDCV~la 76 (251)
T 2wqk_A 53 KMRKIDTDFYTVIDGTPADCVHLG 76 (251)
T ss_dssp EEEEEETTEEEETTCCHHHHHHHH
T ss_pred eeEEeeccceeecCCChHHHHhhh
Confidence 567777777778999999999886
No 85
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=20.76 E-value=69 Score=19.29 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-CHHHHHHHH
Q psy5101 29 TQAISDFVSYNLDLQRMELGEEP-LVYSGAKLF 60 (111)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~a~~l 60 (111)
-+++.+.++..+..-++.-|..+ +...+|..+
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~~ 48 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASRI 48 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHH
Confidence 37889999999998888889887 566888776
No 86
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=20.56 E-value=77 Score=21.04 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q psy5101 53 VYSGAKLFQELVYS 66 (111)
Q Consensus 53 ~~~~a~~ls~~l~~ 66 (111)
+-...|.||++|+.
T Consensus 155 ~~~yLNRLSD~LFv 168 (196)
T 2idx_A 155 VAKFLNRLSDYLFT 168 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34677889998864
No 87
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=20.07 E-value=54 Score=19.96 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC
Q psy5101 26 AADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD 69 (111)
Q Consensus 26 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~l~~~~~ 69 (111)
..|...+++.+|.-+.+-+...+..-...++-..+.+++-.||+
T Consensus 13 ~~dT~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr 56 (113)
T 2y6x_A 13 REDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFALYRR 56 (113)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcC
Confidence 45788888888887775432222111223333444444545554
Done!