RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5101
(111 letters)
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 144 bits (366), Expect = 2e-45
Identities = 67/111 (60%), Positives = 88/111 (79%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+Y+ANRV DKLT + D I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF
Sbjct: 24 SYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLF 83
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y
Sbjct: 84 KEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSY 134
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 140 bits (356), Expect = 1e-43
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
VA++ +K+ + IYCC +G AADT+ + + ++L + G EP V + ++ +
Sbjct: 25 VVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILR 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++ Y+ + A ++ G D G Q+Y + G R GSG
Sbjct: 85 QTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSYSRLPFTALGSGQGA 133
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 136 bits (346), Expect = 2e-42
Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
Y+ANRV DKLTRV D I+CCRSGSAADTQAI+D V Y+L+L + G P + A +F+
Sbjct: 34 YIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFK 92
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
EL Y +D+LTAGII AG+D K G+VY IPLGG + + A+ GSGST+
Sbjct: 93 ELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTF 142
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 137 bits (347), Expect = 3e-42
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ +
Sbjct: 25 VVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLK 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++++ YR + A ++ G D G +Y I G + GSGS
Sbjct: 85 QMLFRYRGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLA 133
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 136 bits (344), Expect = 3e-42
Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
V NRV DKL+ + I+C SGSAAD QAI+D +Y L+L +EL E PLV + A +
Sbjct: 24 TAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVV 83
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ + Y YR+ L A +I AGWD+++GGQVY GGML+RQ +GGSGS+Y
Sbjct: 84 KNISYKYREDLLAHLIVAGWDQREGGQVYGTM-GGMLIRQPFTIGGSGSSY 133
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 138 bits (350), Expect = 4e-42
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+VA++ K+ + + +G AAD Q ++ L + E V + +K+
Sbjct: 99 NWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKIL 158
Query: 61 QELVYSYRDS-LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
LVY Y+ + L+ G + G+ RK+G +Y + G ++ + GSG T+
Sbjct: 159 SNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTF 210
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 136 bits (345), Expect = 5e-42
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
VA++ KL R++ I+C +G+AADT+A++ + N++L + EP V S ++ +
Sbjct: 25 IVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLK 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++ Y+ + A +I AG D G ++ I G GSGS
Sbjct: 85 QHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAHGSTDVGYYLSLGSGSLA 133
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 135 bits (342), Expect = 9e-42
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+VA++ ++ + + +G AAD Q ++ L + E V + +K+
Sbjct: 24 NWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKIL 83
Query: 61 QELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
LVY Y+ L+ G + G+ RK+G +Y + G ++ + GSG T+
Sbjct: 84 SNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTF 135
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 136 bits (344), Expect = 2e-41
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
VA++ KL R++ I+C +G+AADT+A++ + N++L + EP V S ++ +
Sbjct: 54 IVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLK 113
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++ Y+ + A +I AG D G ++ I G GSGS
Sbjct: 114 QHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAHGSTDVGYYLSLGSGSLA 162
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 131 bits (332), Expect = 4e-40
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+ R + K ++TD SG D ++ + L + + + + A +
Sbjct: 33 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 92
Query: 61 QELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++YS R I G D + G VY G R GGS S
Sbjct: 93 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAM 144
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 128 bits (325), Expect = 4e-39
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++ ++ KL ++ +G D Q + ++ L+L R++ + + A L
Sbjct: 33 FIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLS 92
Query: 62 ELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++ + ++ G D V+ I G + A GSGS +
Sbjct: 93 NMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPF 141
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 128 bits (325), Expect = 4e-39
Identities = 7/113 (6%), Positives = 18/113 (15%), Gaps = 2/113 (1%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
Y + + R T I ++ + + A
Sbjct: 25 LYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSG 84
Query: 61 QELVYSYRDS-LTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGSTY 111
+ + + + + GG
Sbjct: 85 LVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFG 137
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 128 bits (323), Expect = 6e-39
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
Y+A++ K+ + + +G AAD ++ + + E V + +KL
Sbjct: 25 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLA 84
Query: 62 ELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+VY Y+ L+ G + GWD K+G +Y + G + GSGS Y
Sbjct: 85 NMVYQYKGMGLSMGTMICGWD-KRGPGLYYVDSEGNRISGATFSVGSGSVY 134
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 127 bits (322), Expect = 8e-39
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
++A++ A K+ ++ D + +GS D Q ++ + +L + +P V + A L
Sbjct: 24 NFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLT 83
Query: 61 QELVYSYRD-SLTAGIICAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSGSTY 111
L+ SYR ++ G D +G +Y I P+GG + + + GSGS
Sbjct: 84 SNLLNSYRYFPYLVQLLIGGID-SEGKSIYSIDPIGGAIEEKDIVATGSGSLT 135
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 127 bits (322), Expect = 2e-38
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPL-VYSGAKL 59
+ +R K+ DNI +G AAD A+ ++ + ++ L + S A+
Sbjct: 33 YSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARN 92
Query: 60 FQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
Q L+Y R I AG D G VY G R++ GG+ ++
Sbjct: 93 IQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASL 145
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 124 bits (313), Expect = 2e-37
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
DK+ ++++ I G A DT ++++ N+ L +M G E + A
Sbjct: 25 IVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFT 84
Query: 61 QELVY---SYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ + R ++ AG+D +G +Y + L + A G G+
Sbjct: 85 RRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFL 138
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 123 bits (312), Expect = 2e-37
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
V DK +++ + +G A DT ++++ N+ L + E + +
Sbjct: 25 ISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFV 84
Query: 61 QELVY---SYRDSLTAGIICAGWDRKKGG-QVYCIPLGGMLMRQKMAMGGSGSTY 111
++ + R ++ G+D+KK ++Y I G + G Y
Sbjct: 85 RQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFY 139
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 122 bits (309), Expect = 8e-37
Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
A + K+ + D +Y +G A D Q ++ + + L+L ++ G + Y+ +
Sbjct: 32 AQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMV 91
Query: 61 QELVYSYR-DSLTAGIICAGWDRKKGGQ-VYCI-PLGGMLMRQKMAMGGSGSTY 111
L+Y R + AG D K + + +G ++ + G+ +
Sbjct: 92 ANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQ 145
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 119 bits (301), Expect = 2e-35
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM-ELGEEPLVYSGAKLF 60
R ++ RV ++ SG AD Q + + + + + G +
Sbjct: 33 LARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWL 92
Query: 61 QELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+YS R + L ++ G+ + + + G+ G G+
Sbjct: 93 TRAMYSRRSKMNPLWNTMVIGGYA-DGESFLGYVDMLGVAYEAPSLATGYGAYL 145
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 118 bits (298), Expect = 6e-35
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 8/119 (6%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS-----YNLDLQRMELGEEPLVYS 55
+ + ++L V DN SG +D Q I + D + E
Sbjct: 32 SLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSY 91
Query: 56 GAKLFQELVYSYRDS---LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++Y R L II AG + + L G+ G G+
Sbjct: 92 IFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHM 150
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 111 bits (280), Expect = 3e-32
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 11/121 (9%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+A+R +K+ + +G+A + + L+ G A
Sbjct: 25 LIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLA 84
Query: 62 ELVYSYRDS---------LTAGIICAGWDRKKGGQVYCIPLGGMLMRQK--MAMGGSGST 110
+V + L G D + G++ + G ++ GSGS
Sbjct: 85 SMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSL 144
Query: 111 Y 111
+
Sbjct: 145 F 145
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 110 bits (277), Expect = 5e-32
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
+ + +K+ +++ +G A D +++ Y +L +++ + +L
Sbjct: 32 SLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLV 90
Query: 61 QELVYSYRDS-LTAGIICAGWDRKKG-GQVYCI-PLGGMLMRQKMAMGGSGSTY 111
+Y R G + AG + K G + +G + + + G+ S
Sbjct: 91 SSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQ 144
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 111 bits (280), Expect = 7e-32
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 8/119 (6%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS-----YNLDLQRMELGEEPLVYS 55
+ + ++L V DN SG +D Q I + D + E
Sbjct: 65 SLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSY 124
Query: 56 GAKLFQELVYSYRDS---LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++Y R L II AG + + L G+ G G+
Sbjct: 125 IFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHM 183
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 105 bits (263), Expect = 3e-29
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 11/121 (9%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+A+R + + + +G+A + + L+ G A
Sbjct: 90 LIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLA 149
Query: 62 ELVYSYRDSLT---------AGIICAGWDRKKGGQVYCIPLGGMLMRQK--MAMGGSGST 110
+V + G D + G++ + G ++ GSGS
Sbjct: 150 SMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSL 209
Query: 111 Y 111
+
Sbjct: 210 F 210
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 103 bits (259), Expect = 1e-28
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 11/121 (9%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++ R K+ D +G+AA + + L+ G
Sbjct: 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA 141
Query: 62 ELVYS----YRDSLTAGIICAGWDR-----KKGGQVYCIPLGG--MLMRQKMAMGGSGST 110
+V L A + AG+D + G++ G + + GSGS
Sbjct: 142 IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201
Query: 111 Y 111
+
Sbjct: 202 F 202
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 56.9 bits (137), Expect = 3e-11
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP-----LVYSGAKLF 60
K++ + D + G + + + + D++ L + A+
Sbjct: 48 TALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTL 107
Query: 61 QELVYSYRDSLTAGIICA---GWDRKKGGQVYCIPLGGMLMRQK--MAMGGSGSTY 111
+ I A K Q+Y I G ++ ++ + MGG+
Sbjct: 108 GTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPI 163
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 40.4 bits (94), Expect = 2e-05
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 2 YVANRVADKLTRVTDN-IYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
V A K+ R+ + + +G AD + + L++ + L + + AK +
Sbjct: 25 TVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVEL--AKDW 82
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK---MAMGGSGSTY 111
+ L A +I A + I G +++ + + GSG Y
Sbjct: 83 RT--DRALRKLEAMLIVADEK-----ESLIITGIGDVVQPEEDQILAIGSGGNY 129
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 39.9 bits (93), Expect = 4e-05
Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 9/113 (7%)
Query: 6 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP-----LVYSGAKLF 60
R K++ + D + +G + + D + L A+
Sbjct: 48 RSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTL 107
Query: 61 QELVYSYRDSLTAGIICAGWDR---KKGGQVYCI-PLGGMLMRQKMAMGGSGS 109
+ + A K ++Y I G + + G +
Sbjct: 108 GTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTT 160
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 31.5 bits (72), Expect = 0.035
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGE----EPL 52
++K+ ++ +++ C +G +D +++ Y ++ E E L
Sbjct: 56 LDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRY-----LLQYQEPIPCEQL 110
Query: 53 VYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
V + + Q R ++ GWD+ G Q+Y
Sbjct: 111 VTALCDIKQAYTQFGGKR-PFGVSLLYIGWDKHYGFQLYQS 150
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 31.5 bits (72), Expect = 0.037
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP----LVYSGAKLFQE--L 63
+L V ++ +G AD ++++D R G L A L
Sbjct: 65 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 124
Query: 64 VYSYRDSLTAGIICAGWDRKKGGQVYCI 91
+ R + + G Q+Y I
Sbjct: 125 YSAVR-PFGCSFMLGSYSVNDGAQLYMI 151
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 31.1 bits (71), Expect = 0.039
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----L 52
+ +KL ++ D I +G AD + + + +Y E+ L
Sbjct: 56 LEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNY-----LKTYNEDIPVEIL 110
Query: 53 VYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
V + + Q R I AG+D + G Q+Y
Sbjct: 111 VRRLSDIKQGYTQHGGLR-PFGVSFIYAGYDDRYGYQLYTS 150
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 31.1 bits (71), Expect = 0.045
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF------VSYNLDLQRMELGEEP----LVYSGAKL 59
K++ +T +I SG D + + D SY + GE P LV AK+
Sbjct: 63 KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSY-----KRIYGEYPPTKLLVSEVAKI 117
Query: 60 FQE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
QE R ++ AG D G +Y +
Sbjct: 118 MQEATQSGGVR-PFGVSLLIAGHDEFNGFSLYQV 150
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 30.6 bits (70), Expect = 0.066
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
L ++T+NI C +G AD+++ ++ + + G E L A +
Sbjct: 68 HLFKITENIGCVMTGMTADSRSQVQRARYEAANW-----KYKYGYEIPVDMLCKRIADIS 122
Query: 61 QE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Q R L +I G D ++G QVY
Sbjct: 123 QVYTQNAEMR-PLGCCMILIGIDEEQGPQVYKC 154
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 30.6 bits (70), Expect = 0.067
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
+ ++ I +G D + + + R + G + L A L
Sbjct: 62 YIFCISRTIGMVVNGPIPDARNAALRAKAEAAEF-----RYKYGYDMPCDVLAKRMANLS 116
Query: 61 QE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Q R L + D + G +Y
Sbjct: 117 QIYTQRAYMR-PLGVILTFVSVDEELGPSIYKT 148
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 30.3 bits (69), Expect = 0.098
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
K+ + DN+ +G AD + + + S+ R+ + + + A L
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRARVECQSH-----RLTVEDPVTVEYITRYIASLK 115
Query: 61 QE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Q R + G+D ++Y
Sbjct: 116 QRYTQSNGRR-PFGISALIVGFDFDGTPRLYQT 147
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 28.8 bits (65), Expect = 0.28
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP----LVYSGAKLFQELVY 65
K+ + +I C SG AD +++ + + E+ L S L
Sbjct: 58 KIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGE 117
Query: 66 SYRDSLTAG-------IICAGWDRKKGGQVYCI 91
++ AG D G Q++
Sbjct: 118 GASGEERLMSRPFGVALLIAGHDADDGYQLFHA 150
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 28.7 bits (65), Expect = 0.34
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP----LVYSGAKLFQE--L 63
K+ +T +I SG D + + + E LV A + QE
Sbjct: 63 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 122
Query: 64 VYSYRDSLTAGIICAGWDRKKGGQVYCI 91
R ++ GW+ + ++
Sbjct: 123 SGGVR-PFGVSLLICGWN-EGRPYLFQS 148
Score = 28.4 bits (64), Expect = 0.38
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
K+ ++ D++ SG AD + + D Y R+ GEE L +
Sbjct: 70 KIFQIDDHVAAATSGLVADARVLIDRARLEAQIY-----RLTYGEEISIEMLAKKICDIK 124
Query: 61 QE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Q R ++ AG D K +++
Sbjct: 125 QAYTQHGGVR-PFGVSLLIAGID-KNEARLFET 155
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 28.0 bits (63), Expect = 0.48
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
K++++ ++ SG AD++ + + S+ R+ L + L A +
Sbjct: 61 KVSKIDSHVVLSFSGLNADSRILIEKARVEAQSH-----RLTLEDPVTVEYLTRYVAGVQ 115
Query: 61 QE--LVYSYRDSLTAGIICAGWDRKKGG-QVYCI 91
Q R + AG+D + ++Y
Sbjct: 116 QRYTQSGGVR-PFGVSTLIAGFDPRDDEPKLYQT 148
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 27.7 bits (62), Expect = 0.82
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP----LVYSGAKLFQE--L 63
K+ ++ ++I SG AD + + D + R+ L Q+
Sbjct: 66 KIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQ 125
Query: 64 VYSYRDSLTAGIICAGWDRKKGGQVYCI 91
R ++ AG + + ++Y
Sbjct: 126 YGGVR-PFGVSLLIAGVN--EVPKLYET 150
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 27.2 bits (61), Expect = 0.90
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEPLVYSGAKLFQE-- 62
K+ V ++I +G AD + + +F + R L LV Q
Sbjct: 62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDR-PLPVSRLVSLIGSKTQIPT 120
Query: 63 LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Y R G++ AG+D G ++
Sbjct: 121 QRYGRR-PYGVGLLIAGYD-DMGPHIFQT 147
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 27.2 bits (61), Expect = 0.97
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP----LVYSGAKLFQE--L 63
K+ V +I C SG D + + + + + Q L
Sbjct: 62 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 121
Query: 64 VYSYRDSLTAGIICAGWDRKKGGQVYCI 91
S R I G D K G +Y +
Sbjct: 122 YNSVR-PFGVSTIFGGVD-KNGAHLYML 147
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 27.3 bits (61), Expect = 1.1
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV----- 64
K+ V +I C SG D + + + + + + A + V
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 125
Query: 65 YSYRDSLTAGIICAGWDRKKGGQVYCI 91
Y+ I G D K G +Y +
Sbjct: 126 YNSVRPFGVSTIFGGVD-KNGAHLYML 151
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 26.8 bits (60), Expect = 1.4
Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
K+ + +I C SG AD + + D ++ E + + + L
Sbjct: 66 KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNH-----WFTYNETMTVESVTQAVSNLA 120
Query: 61 QE--LVYSYRDSLT----AGIICAGWDRKKGGQVYCI 91
+ + +++ ++ G D +KG Q++ +
Sbjct: 121 LQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHM 156
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 26.8 bits (60), Expect = 1.6
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDF-----VSYNLDLQRMELGEEP----LVYSGAKLF 60
K+ + D + SG AD + + DF ++ G LV A
Sbjct: 66 KIQLIDDYVAAVTSGLVADARVLVDFARISAQQE-----KVTYGSLVNIENLVKRVADQM 120
Query: 61 QE--LVYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Q+ R +I AG D + G +++
Sbjct: 121 QQYTQYGGVR-PYGVSLIFAGID-QIGPRLFDC 151
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 26.4 bits (59), Expect = 2.0
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 10 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP----LVYSGAKLFQE--L 63
K+ + +++ +G A D + +S+++ + + + + Q+
Sbjct: 61 KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120
Query: 64 VYSYRDSLTAGIICAGWDRKKGGQVYCI 91
Y R G++ G+D K G +
Sbjct: 121 SYGGR-PYGVGLLIIGYD-KSGAHLLEF 146
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 26.2 bits (58), Expect = 2.9
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 1 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS--YNLDLQRMELGEEPLVYSGAK 58
+ L N Y G + ++ S YN +L+ E V +GA
Sbjct: 73 QFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA----ENVTVTTGAN 128
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 25.3 bits (56), Expect = 4.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 66 SYRDSLTAGIICAGWDRKKGGQV 88
S R +T + CAG+ +G +
Sbjct: 176 STRIRITDNMFCAGYKPDEGKRG 198
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 25.4 bits (56), Expect = 4.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 66 SYRDSLTAGIICAGWDRKKGGQV 88
S R +T + CAG+ +G +
Sbjct: 206 STRIRITDNMFCAGYKPDEGKRG 228
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 25.2 bits (56), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 91 IPLGGMLMRQKMAMG---GS-GSTY 111
P+ ML Q++A GS GSTY
Sbjct: 276 FPVSAMLTTQEIASAFHVGSHGSTY 300
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 24.8 bits (54), Expect = 6.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 66 SYRDSLTAGIICAGWDRKKGGQV 88
S R +T + CAG+ +G +
Sbjct: 341 STRIRITDNMFCAGYKPDEGKRG 363
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein,
lipid degradation, phosphatidylinositol (3,
4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo
sapiens} SCOP: b.55.1.1
Length = 125
Score = 24.4 bits (53), Expect = 7.0
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 64 VYSYRDSLTAGIICAGWDRKKGGQV 88
+++ + + +I AG+ K+G +
Sbjct: 3 MFTPKPPQDSAVIKAGYCVKQGAVM 27
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 24.8 bits (55), Expect = 7.2
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 91 IPLGGMLMRQKMAMG---GS-GSTY 111
+P+G +L R+++A GS GST+
Sbjct: 247 VPIGAILAREEVAQSFTPGSHGSTF 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 8.3
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 30 QAISDFVSYNLD-LQRMELGE------EPLVYSGAKLFQELVYSYRDS---LTAGIICAG 79
Q +D Y + L+ +L + L+ A+ EL+ + D+ T G+
Sbjct: 163 QGNTD--DY-FEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 80 W 80
W
Sbjct: 218 W 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,677,709
Number of extensions: 85947
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 58
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)