RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5101
(111 letters)
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 85.9 bits (212), Expect = 7e-23
Identities = 67/110 (60%), Positives = 87/110 (79%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
Y+ANRV DKLT + D I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF+
Sbjct: 25 YIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y
Sbjct: 85 EMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSY 134
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 77.5 bits (190), Expect = 1e-19
Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
Y+ANRV DKLTRV D I+CCRSGSAADTQAI+D V Y+L+L + G P + A +F+
Sbjct: 34 YIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFK 92
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
EL Y +D+LTAGII AG+D K G+VY IPLGG + + A+ GSGST+
Sbjct: 93 ELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTF 142
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 72.1 bits (176), Expect = 2e-17
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
VA++ KL R++ I+C +G+AADT+A++ + N++L + EP V S ++ +
Sbjct: 25 IVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLK 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++ Y+ + A +I AG D G ++ I G GSGS
Sbjct: 85 QHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAHGSTDVGYYLSLGSGSLA 133
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 69.8 bits (170), Expect = 1e-16
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
VA++ K+ ++ NIYCC +G+AADT + +S NL+L + G P V + ++ +
Sbjct: 25 VVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLK 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++++ YR + A ++ G D G +Y I G + GSGS
Sbjct: 85 QMLFRYRGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLA 133
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 67.9 bits (165), Expect = 7e-16
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEPLVYSGAKLF 60
+ +R K+ DNI +G AAD A+ ++ + ++ + S A+
Sbjct: 34 SINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNI 93
Query: 61 QELVYSY-RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
Q L+Y I AG D G VY G R++ GG+ ++
Sbjct: 94 QHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASL 145
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 67.5 bits (164), Expect = 9e-16
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+VA++ ++ + + +G AAD Q ++ L + E V + +K+
Sbjct: 25 WVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILS 84
Query: 62 ELVYSYRDS-LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
LVY Y+ + L+ G + G+ RK+G +Y + G ++ + GSG T+
Sbjct: 85 NLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTF 135
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 64.8 bits (157), Expect = 8e-15
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++A++ A K+ ++ D + +GS D Q ++ + +L + +P V + A L
Sbjct: 25 FIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTS 84
Query: 62 ELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
L+ SYR ++ G D + P+GG + + + GSGS
Sbjct: 85 NLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLT 135
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 63.5 bits (154), Expect = 4e-14
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 9 DKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP-----LVYSGAKLFQEL 63
K++ + D + G + + + + D++ L + A+ +
Sbjct: 43 HKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTI 102
Query: 64 VYSYRDSLTAGIICAGWD---RKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
I A K Q+Y I G ++ ++ + G+T
Sbjct: 103 FTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTE 153
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 63.2 bits (153), Expect = 5e-14
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 8/118 (6%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRME-----LGEEPLVYSG 56
+ ++L V DN SG +D Q I + + + E
Sbjct: 33 LLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYI 92
Query: 57 AKLFQELVYSYRDSLT---AGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ ++Y R + II AG + + L G+ G G+
Sbjct: 93 FEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHM 150
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 62.5 bits (151), Expect = 6e-14
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
V DK +++ + +G A DT ++++ N+ L + E + + +
Sbjct: 26 SVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVR 85
Query: 62 ELV---YSYRDSLTAGIICAGWDRKKGG-QVYCIPLGGMLMRQKMAMGGSGSTY 111
+ + R ++ G+D+KK ++Y I G + G Y
Sbjct: 86 QELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFY 139
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 62.1 bits (150), Expect = 8e-14
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
Y+A++ K+ + + +G AAD ++ + + E V + +KL
Sbjct: 25 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLA 84
Query: 62 ELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMG 105
+VY Y+ L+ G + GWD++ G Y G + ++G
Sbjct: 85 NMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVG 129
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 60.9 bits (147), Expect = 4e-13
Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 5/115 (4%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++K+ ++ +++ C +G +D +++ + ++ E
Sbjct: 55 LDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALC 114
Query: 62 ELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++ +Y + ++ GWD+ G Q+Y G K G+ S
Sbjct: 115 DIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAA 169
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 59.9 bits (144), Expect = 8e-13
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+ R + K ++TD SG D ++ + L + + + + A +
Sbjct: 34 SIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLS 93
Query: 62 ELVYSY-RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++YS I G D + G VY G R GGS S
Sbjct: 94 TILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAM 144
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 59.5 bits (143), Expect = 1e-12
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+ K+ + D +Y +G A D Q ++ + + L+L ++ G + Y+ +
Sbjct: 32 QLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVA 91
Query: 62 ELVYSY-RDSLTAGIICAGWDRKKGGQ--VYCIPLGGMLMRQKMAMGGSGSTY 111
L+Y + AG D K +G ++ + G+ +
Sbjct: 92 NLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQ 144
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 59.3 bits (143), Expect = 2e-12
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 5/115 (4%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
R K+ + DN+ +G AD + + + R+ + + V +
Sbjct: 52 LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIA 111
Query: 62 ELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
L Y R + G+D ++Y G K G G+
Sbjct: 112 SLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKS 166
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 58.1 bits (140), Expect = 4e-12
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 5/115 (4%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+L V ++ +G AD ++++D R G + A
Sbjct: 57 LYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVA 116
Query: 62 ELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
V++Y + + G Q+Y I G+ G
Sbjct: 117 MYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQA 171
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 57.3 bits (138), Expect = 8e-12
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+ +K+ + +I C SG AD + + D E V S +
Sbjct: 51 LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVS 110
Query: 62 ELVYSYRDS----------LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
L + + ++ G D +KG Q++ + G ++ GS S
Sbjct: 111 NLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEG 169
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 55.4 bits (133), Expect = 4e-11
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 6/116 (5%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
K++++ ++ SG AD++ + + R+ L + V +
Sbjct: 53 QDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVA 112
Query: 62 ELVYSYRDS-----LTAGIICAGWD-RKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ Y S + AG+D R ++Y G+ G S
Sbjct: 113 GVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKT 168
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 54.8 bits (131), Expect = 5e-11
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
++ ++ KL ++ +G D Q + ++ L+L R++ + + A L
Sbjct: 25 FIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLS 84
Query: 62 ELVYSYRDS-LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++ + ++ G D V+ I G + A GSGS +
Sbjct: 85 NMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPF 133
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 54.0 bits (129), Expect = 1e-10
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDL-QRMELGEEPLVYSGAKLF 60
R ++ RV ++ SG AD Q + + + + + G +
Sbjct: 33 LARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWL 92
Query: 61 QELVYSYRDS--LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+YS R + G + + + G+ G G+
Sbjct: 93 TRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYL 145
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 53.9 bits (129), Expect = 1e-10
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
V + K+ V +I C SG D + + + + + + A
Sbjct: 55 LVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLG 113
Query: 62 ELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ V ++ I G K G +Y + G K A G G
Sbjct: 114 QYVQAHTLYNSVRPFGVSTIFGGV-DKNGAHLYMLEPSGSYWGYKGAATGKGRQS 167
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 53.1 bits (127), Expect = 3e-10
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 9 DKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY- 67
K+ V ++I +G AD + + +F+ R V L
Sbjct: 58 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 117
Query: 68 ----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
R G++ AG+D G ++ + G+ S
Sbjct: 118 QRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQS 164
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 52.1 bits (124), Expect = 6e-10
Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+ +K+ +++ +G A D +++ Y +L +++ + +L
Sbjct: 33 LGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVS 91
Query: 62 ELVYSYR-DSLTAGIICAGWDRKKGG--QVYCIPLGGMLMRQKMAMGGSGSTY 111
+Y R G + AG + K G +G + + + G+ S
Sbjct: 92 SSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQ 144
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 51.8 bits (123), Expect = 9e-10
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 11/121 (9%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+A+R +K+ + +G+A + + L+ G A
Sbjct: 25 LIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLA 84
Query: 62 ELVYSYRDS---------LTAGIICAGWDRKKGGQVYCIPLGGMLM--RQKMAMGGSGST 110
+V + L G D + G++ + G R GSGS
Sbjct: 85 SMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSL 144
Query: 111 Y 111
+
Sbjct: 145 F 145
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 51.6 bits (123), Expect = 9e-10
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 11/121 (9%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+ + +K+ + +I C SG AD +++ + + E+ V S +
Sbjct: 50 LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVC 109
Query: 62 ELVYSYRDS-----------LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 110
+L + + ++ AG D G Q++ G R GSGS
Sbjct: 110 DLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSE 169
Query: 111 Y 111
Sbjct: 170 G 170
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 51.2 bits (122), Expect = 1e-09
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP-----LVYSG 56
+ +K+ + D + SG AD + + DF + +++ G +
Sbjct: 46 LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVA 105
Query: 57 AKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++ Q Y +I AG + G +++ G + K GSG
Sbjct: 106 DQMQQYTQYGGVRPYGVSLIFAGI-DQIGPRLFDCDPAGTINEYKATAIGSGKDA 159
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 51.1 bits (122), Expect = 1e-09
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 5/115 (4%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
+ + L ++T+NI C +G AD+++ Y + + G E V K
Sbjct: 59 LLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIA 118
Query: 62 ELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
++ Y L +I G D ++G QVY G K G T
Sbjct: 119 DISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTE 173
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 50.6 bits (120), Expect = 2e-09
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
DK+ ++++ I G A DT ++++ N+ L +M G E + A +
Sbjct: 26 VQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTR 85
Query: 62 ELVYSYRDSLT---AGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ S T ++ AG+D +G +Y + L + A G G+
Sbjct: 86 RNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFL 138
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 48.1 bits (114), Expect = 2e-08
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 6/106 (5%)
Query: 9 DKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV---- 64
K+ + +++ +G A D + +S+++ + + + V L +
Sbjct: 60 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNT 119
Query: 65 -YSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 109
G++ G+ K G + G + G+ S
Sbjct: 120 QSYGGRPYGVGLLIIGY-DKSGAHLLEFQPSGNVTELYGTAIGARS 164
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 48.1 bits (114), Expect = 2e-08
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYS-----G 56
+ +K+ ++ ++I SG AD + + D + R+ V
Sbjct: 55 LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKIC 114
Query: 57 AKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
Q Y ++ AG + + ++Y G L+ K G G
Sbjct: 115 DFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMA 167
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 44.3 bits (104), Expect = 3e-07
Identities = 12/110 (10%), Positives = 25/110 (22%), Gaps = 6/110 (5%)
Query: 2 YVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQ 61
V A K+ ++ + + + + V
Sbjct: 25 TVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRT 84
Query: 62 ELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ V ++L K+ + + A GSG Y
Sbjct: 85 DRVLRRLEAL------LLVADKENIFIISGNGEVIQPDDDAAAIGSGGPY 128
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 43.2 bits (101), Expect = 6e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 2 YVANRVADKLTRVTDN-IYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLF 60
V A K+ R+ + + +G AD + + L++ + L + AK +
Sbjct: 25 TVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKS--AVELAKDW 82
Query: 61 QELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTY 111
+ + + D K+ + I ++ GSG Y
Sbjct: 83 RTDRALRKLEA----MLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNY 129
>g2pka.1 b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [TaxId:
9823]}
Length = 232
Score = 23.4 bits (49), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 66 SYRDSLTAGIICAGWDRKKGGQVYCIP-LGGMLMRQKMAMG 105
++ D +T ++CAG+ GG+ C+ GG L+ M G
Sbjct: 158 AHPDKVTESMLCAGYL--PGGKDTCMGDSGGPLICNGMWQG 196
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,285
Number of extensions: 15570
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 33
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)