BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5102
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 198 KVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNML-DDRGVAVDQVFHKVDI 256
+V VI +PK + T+L+ L + +T MFD SK++ + + + V + K I
Sbjct: 269 RVQVI--LPKFTAVAQTDLKEPLKVLGITDMFDSSKANFAKITTGSENLHVSHILQKAKI 326
Query: 257 EVTEQGTVA-AASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
EV+E GT A AA+T I+I R S P ++RPF+FFI H PT +++F G I KP
Sbjct: 327 EVSEDGTKASAATTAILIARSSPPWFIVDRPFLFFIRHNPTGAVLFMGQINKP 379
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 67
+ N+V +P I L ++ LG+DG+TK +L M
Sbjct: 29 HDNIVISPHGIASVLGMLQLGADGRTKKQLAMVM 62
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 139
+ N+V +P I L ++ LG+DG+TK +L M
Sbjct: 29 HDNIVISPHGIASVLGMLQLGADGRTKKQLAMVM 62
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 167 MYFILP--KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMN 224
M+ P K LS T L S + ++ + +PK + + +LR L +
Sbjct: 258 MFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLG 317
Query: 225 VTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKI 283
+T MF ++D +++ D + V Q KV IEV E GTVA++ST +I++ R++ + +
Sbjct: 318 MTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 377
Query: 284 NRPFIFFIYHKPTDSIVFWGSIYKP 308
+RPF+F + H PT +++F G + +P
Sbjct: 378 DRPFLFVVRHNPTGTVLFMGQVMEP 402
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 50 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 100
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 50 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 86
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 167 MYFILP--KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMN 224
M+ P K LS T L S + ++ + +PK + + +LR L +
Sbjct: 239 MFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLG 298
Query: 225 VTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKI 283
+T MF ++D +++ D + V Q KV IEV E GTVA++ST +I++ R++ + +
Sbjct: 299 MTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 358
Query: 284 NRPFIFFIYHKPTDSIVFWGSIYKP 308
+RPF+F + H PT +++F G + +P
Sbjct: 359 DRPFLFVVRHNPTGTVLFMGQVMEP 383
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 31 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 81
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 31 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 67
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 243 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 302
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V Q KV IEV E GTVA++ST +I++ R++ + ++RPF+F +
Sbjct: 303 QADFTSLSDQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVV 362
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 363 RHNPTGTVLFMGQVMEP 379
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 167 MYFILP--KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMN 224
M+ P K+ LS T LD + + + ++ + +PK + + +LR L +
Sbjct: 235 MFIAAPFEKDVHLSALTNILDAELIRQWKGNMTRLPRLLILPKFSLETEVDLRGPLEKLG 294
Query: 225 VTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPT-VKI 283
+ MF + +D +++ D ++V Q KV IEV E GTVA++ST +I+ PT + I
Sbjct: 295 MPDMFSATLADFTSLSDQEQLSVAQALQKVRIEVNESGTVASSSTAFVISARMAPTEMVI 354
Query: 284 NRPFIFFIYHKPTDSIVFWGSIYKP 308
+R F+F + H PT++I+F G + +P
Sbjct: 355 DRSFLFVVRHNPTETILFMGQVMEP 379
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ + + G+T+ ++ MG ++ K TAH+LR+
Sbjct: 27 SKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQDAMGF----KVNEKGTAHALRQ 77
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ + + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQDAMG 63
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 167 MYFILP--KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMN 224
M+ P K LS T L S + ++ + +PK + + +LR L +
Sbjct: 235 MFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLG 294
Query: 225 VTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKI 283
+T MF ++D +++ D + V Q KV IEV E GTVA++ST +I++ R++ + +
Sbjct: 295 MTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 354
Query: 284 NRPFIFFIYHKPTDSIVFWGSIYKP 308
+RPF+F + H PT +++F G + +P
Sbjct: 355 DRPFLFVVRHNPTGTVLFMGQVMEP 379
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 167 MYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
M +LPK N + ++L D+F + + + +PK K+ + L+ L ++ +
Sbjct: 233 MAILLPKENTGVEGLKQNLTIDRFQNYLSDLRERKITVLLPKFKLETKYSLKAPLQSLGI 292
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS---KPTV- 281
+F+ S +DLS ++D + V V HK +EV E+GTVAAA+TG++I S +P V
Sbjct: 293 KQIFE-SGADLSG-INDGSLRVSAVEHKAVVEVNEEGTVAAATTGVVIVPYSLGPEPVVF 350
Query: 282 KINRPFIFFIYHKPTDSIVFWGSIYK 307
+++ PF+FFI + TD I F G + K
Sbjct: 351 RVDHPFLFFIRNTRTDDIFFVGQVNK 376
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 6 MRSNLILRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTH 65
M+ L + + L + RA+ S KN V F+P S+ A+ + G+ GQT+ EL+
Sbjct: 1 MQEEAKLTKANNRFGLRLLRALPSGPEKN--VFFSPYSVSTAMGMAFAGARGQTQQELSQ 58
Query: 66 FMGVA----TGRSLSNKLTAHS--LRRGITQMTLDMERA 98
+G + T + + T H+ L+ + TLD+ A
Sbjct: 59 GLGFSDVDLTDAGVLDAYTHHTERLKSTPSNSTLDVANA 97
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 78 KLTAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTH 137
KLT + R G L + RA+ S KN V F+P S+ A+ + G+ GQT+ EL+
Sbjct: 6 KLTKANNRFG-----LRLLRALPSGPEKN--VFFSPYSVSTAMGMAFAGARGQTQQELSQ 58
Query: 138 FMGVA 142
+G +
Sbjct: 59 GLGFS 63
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 243 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 302
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V KV IEV E GTVA++ST +I++ R++ + I+RPF+F +
Sbjct: 303 QADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVV 362
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 363 RHNPTGTVLFMGQVMEP 379
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 256 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 315
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V KV IEV E GTVA++ST +I++ R++ + I+RPF+F +
Sbjct: 316 QADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVV 375
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 376 RHNPTGTVLFMGQVMEP 392
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLR 85
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 40 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALR 89
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 40 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 76
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 243 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRPF 302
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V KV IEV E GTVA++ST +I++ R++ + I+RPF+F +
Sbjct: 303 QADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVV 362
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 363 RHNPTGTVLFMGQVMEP 379
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 163 NEVYMYFILPK-----NPDLSEFTKDLDYDKFSRIIESTNKV---DVIYTIPKMKVTSST 214
+V M+ +LP + L ++ YDK ++ S +K+ +V IP+ K+
Sbjct: 227 GDVSMFLLLPDEIADVSTGLELLESEITYDKLNKWT-SKDKMAEDEVEVYIPQFKLEEHY 285
Query: 215 ELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
ELR++L +M + F+ +++ S M + + + +VFH+ ++V E+GT AAA TG ++T
Sbjct: 286 ELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMT 345
Query: 275 RIS---KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ P + PF+F I HK T+ I+F+G P
Sbjct: 346 GRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP 382
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 35 QNVVFAPLSIVGALALVLLGSDGQTKDELT 64
QN+ +P SI +A+V +GS G T+D++
Sbjct: 26 QNLFLSPWSISSTMAMVYMGSRGSTEDQMA 55
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 107 QNVVFAPLSIVGALALVLLGSDGQTKDELT 136
QN+ +P SI +A+V +GS G T+D++
Sbjct: 26 QNLFLSPWSISSTMAMVYMGSRGSTEDQMA 55
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 163 NEVYMYFILPK-----NPDLSEFTKDLDYDKFSRIIESTNKV---DVIYTIPKMKVTSST 214
+V M+ +LP + L ++ YDK ++ S +K+ +V IP+ K+
Sbjct: 227 GDVSMFLLLPDEIADVSTGLELLESEITYDKLNKWT-SKDKMAEDEVEVYIPQFKLEEHY 285
Query: 215 ELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
ELR++L +M + F+ +++ S M + + + +VFH+ ++V E+GT AAA TG ++T
Sbjct: 286 ELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMT 345
Query: 275 RIS---KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ P + PF+F I HK T+ I+F+G P
Sbjct: 346 GRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP 382
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 35 QNVVFAPLSIVGALALVLLGSDGQTKDELT 64
QN+ +P SI +A+V +GS G T+D++
Sbjct: 26 QNLFLSPWSISSTMAMVYMGSRGSTEDQMA 55
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 107 QNVVFAPLSIVGALALVLLGSDGQTKDELT 136
QN+ +P SI +A+V +GS G T+D++
Sbjct: 26 QNLFLSPWSISSTMAMVYMGSRGSTEDQMA 55
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 239 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 298
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V KV IEV E GTVA++ST +I++ R++ + I+RPF+F +
Sbjct: 299 QADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVV 358
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 359 RHNPTGTVLFMGQVMEP 375
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 23 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 73
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 23 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 59
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 241 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRPF 300
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V KV IEV E GTVA++ST +I++ R++ + I+RPF+F +
Sbjct: 301 QADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVV 360
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 361 RHNPTGTVLFMGQVMEP 377
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 25 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 75
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 25 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 61
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 243 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 302
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V KV IEV E GTVA++ST +I++ R++ + I+RPF+F +
Sbjct: 303 QADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVV 362
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 363 RHNPTGTVLFMGQVMEP 379
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 243 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 302
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V Q KV IEV E GTV ++ST +I++ R++ + ++RPF+F +
Sbjct: 303 QADFTSLSDQEPLHVAQALQKVKIEVNESGTVESSSTAVIVSARMAPEEIIMDRPFLFVV 362
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 363 RHNPTGTVLFMGQVMEP 379
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 173 KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVS 232
K LS T L S + ++ + +PK + + +LR L + +T MF
Sbjct: 243 KEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQF 302
Query: 233 KSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPTVKINRPFIFFI 291
++D +++ D + V Q KV IEV E TVA++ST +I++ R++ + ++RPF+F +
Sbjct: 303 QADFTSLSDQEPLHVAQALQKVKIEVNESCTVASSSTAVIVSARMAPEEIIMDRPFLFVV 362
Query: 292 YHKPTDSIVFWGSIYKP 308
H PT +++F G + +P
Sbjct: 363 RHNPTGTVLFMGQVMEP 379
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
FILP L K L D FSR ++ V ++P++ +T + +L+ L+ + V+ +
Sbjct: 272 FILPDEGKLKHLEKGLQVDTFSRWKTLLSRRVVDVSVPRLHMTGTFDLKKTLSYIGVSKI 331
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP-TVKINRPF 287
F+ DL+ + R + V + HK ++++ E+GT AA TG + P VKI++P+
Sbjct: 332 FE-EHGDLTKIAPHRSLKVGEAVHKAELKMDERGTEGAAGTGAQTLPMETPLVVKIDKPY 390
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+ IY + S++F G I P
Sbjct: 391 LLLIYSEKIPSVLFLGKIVNP 411
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 35 QNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRRGITQMTLD 94
+N+ +PLSI A +++ LG+ T DE+ H + +TQ T D
Sbjct: 70 RNIFLSPLSISTAFSMLCLGAQDSTLDEIKQGFNFRKMPEKDLHEGFHYIIHELTQKTQD 129
Query: 95 MERAIRSVMTKNQNV 109
++ +I + + +Q +
Sbjct: 130 LKLSIGNTLFIDQRL 144
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGI-IITRISKPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + I R P VK N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPRSIPPEVKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F I + T + +F G + P
Sbjct: 371 VFLIIEQNTKAPLFMGRVVNP 391
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N++F+P+SI A A++ LG+ G T DE+ + +L+ PEA + F E +R
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 101
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N++F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEI 76
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 229 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLCITGTYDLKSVLGQLGITKV 288
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGI-IITRISKPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + I R P VK N+PF
Sbjct: 289 FS-NGADLSGVTEEAPLKLSKAVHKAVLCIDEKGTEAAGAMFLEAIPRSIPPEVKFNKPF 347
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 348 VFLMIEQNTKSPLFMGKVVNP 368
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 26 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 78
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 26 NIFFSPVSIATAFAMLSLGTKADTHDEI 53
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 158 LEKMRNEVYMYFILPKN-----PDLSEFTKDLDYDKFSRIIESTNKVDVIYTI--PKMKV 210
L ++ E+ M+ +LP + L + ++L Y++ S +S + + + PK +
Sbjct: 260 LPYVKRELSMFILLPDDIKDGTTGLEQLERELTYERLSEWADSKMMTETLVDLHLPKFSL 319
Query: 211 TSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTG 270
+LR L M +T+ F + +D M D + +A+ +V H+ + V E+GT AAA+T
Sbjct: 320 EDRIDLRDTLRNMGMTTAF-TTNADFRGMTDKKDLAISKVIHQSFVAVDEKGTEAAAATA 378
Query: 271 IIITRISKP-----TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+II+ + K++ PF FFI H + +I+F+G P
Sbjct: 379 VIISFTTSVINHVLKFKVDHPFHFFIRHNKSKTILFFGRFCCP 421
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMRN 163
+++N+ F+P SI ALAL L + G T E+ + ++ + + + K RN
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLTAFNKPRN 123
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HF 66
+++N+ F+P SI ALAL L + G T E+ HF
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHF 101
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 273 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 332
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 333 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 390
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 391 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 425
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 273 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 332
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 333 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 390
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 391 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 425
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 158 LEKMRNEVYMYFILPKN-----PDLSEFTKDLDYDKFSRIIESTNKVDVIYTI--PKMKV 210
L ++ E+ M+ +LP + L + ++L Y++ S +S + + + PK +
Sbjct: 252 LPYVKRELSMFILLPDDIKDGTTGLEQLERELTYERLSEWADSKMMTETLVDLHLPKFSL 311
Query: 211 TSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTG 270
+LR L M +T+ F + +D M D + +A+ +V H+ + V E+GT AAA+T
Sbjct: 312 EDRIDLRDTLRNMGMTTAF-TTNADFRGMTDKKDLAISKVIHQSFVAVDEKGTEAAAATA 370
Query: 271 IIITRISKP-----TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+II+ + K++ PF FFI H + +I+F+G P
Sbjct: 371 VIISFTTSVINHVLKFKVDHPFHFFIRHNKSKTILFFGRFCCP 413
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HFMGVATGRSLS 76
+++N+ F+P SI ALAL L + G T E+ HF S S
Sbjct: 29 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSS 75
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HFMGVATGRSLS 148
+++N+ F+P SI ALAL L + G T E+ HF S S
Sbjct: 29 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSS 75
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 285 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 344
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 345 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 402
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 403 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 437
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGCEAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 232 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 291
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 292 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 350
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F I + T + +F G + P
Sbjct: 351 VFLIIEQNTKAPLFMGRVVNP 371
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N++F+P+SI A A++ LG+ G T DE+ + +L+ PEA + F E +R
Sbjct: 29 NILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 81
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N++F+P+SI A A++ LG+ G T DE+
Sbjct: 29 NILFSPVSIAAAFAMLSLGAKGDTHDEI 56
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 282 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 341
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 342 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 400
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 401 VFLMIEQNTKSPLFMGKVVNP 421
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 79 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 131
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 79 NIFFSPVSIATAFAMLSLGTKADTHDEI 106
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGAEAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 371 VFLMIEQNTKSPLFMGKVVNP 391
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ G T DE+ + +L+ PEA + F E +R
Sbjct: 49 NIFFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 101
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NIFFSPVSIAAAFAMLSLGAKGDTHDEI 76
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 371 VFLMIEQNTKSPLFMGKVVNP 391
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N++F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 49 NILFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 101
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N++F+P+SI A A++ LG+ T DE+
Sbjct: 49 NILFSPVSIATAFAMLSLGTKADTHDEI 76
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 262 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 321
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 322 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 380
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 381 VFLMIEQNTKSPLFMGKVVNP 401
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 59 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 111
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 59 NIFFSPVSIATAFAMLSLGTKADTHDEI 86
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 371 VFLMIEQNTKSPLFMGKVVNP 391
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 101
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKADTHDEI 76
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGXEAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 262 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 321
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 322 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 380
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 381 VFLMIEQNTKSPLFMGKVVNP 401
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 59 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 111
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 59 NIFFSPVSIATAFAMLSLGTKADTHDEI 86
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 371 VFLMIEQNTKSPLFMGKVVNP 391
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 101
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKADTHDEI 76
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P VK N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F + + T S +F G + P
Sbjct: 371 VFLMIDQNTKSPLFMGKVVNP 391
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKGDTHDEI 76
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDEL 135
N+ F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKGDTHDEI 76
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
FILP + + L + ++ K + +PK + S +L VL ++ ++++
Sbjct: 224 FILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 283
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT----RISKPTVKIN 284
F S +DLS + + + V ++ HK +EV E GT AAA+TG I T R++ + N
Sbjct: 284 F-TSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQRLVFN 342
Query: 285 RPFIFFIYHKPTDSIVFWGSIYKP 308
RPF+ FI ++I+F G + +P
Sbjct: 343 RPFLMFIVD---NNILFLGKVNRP 363
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 20 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKL 79
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 6 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS----- 59
Query: 80 TAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSI 116
+ L RG Q+ ++ + N +F L +
Sbjct: 60 SEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVV 96
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 92 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRS 146
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 6 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS 59
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
FILP + + L + ++ K + +PK + S +L VL ++ ++++
Sbjct: 256 FILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 315
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT----RISKPTVKIN 284
F S +DLS + + + V ++ HK +EV E GT AAA+TG I T R++ + N
Sbjct: 316 F-TSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQRLVFN 374
Query: 285 RPFIFFIYHKPTDSIVFWGSIYKP 308
RPF+ FI ++I+F G + +P
Sbjct: 375 RPFLMFIVD---NNILFLGKVNRP 395
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 20 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKL 79
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 38 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS----- 91
Query: 80 TAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSI 116
+ L RG Q+ ++ + N +F L +
Sbjct: 92 SEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVV 128
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 92 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRS 146
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 38 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS 91
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 288 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 347
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F + S L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 348 DMGLVDLFSPAASALPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 405
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 406 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 440
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ + +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLCVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVCFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-KPTVKINRPF 287
F + +DLS + ++ + + + HK + + E+GT AA + + +S P K N+PF
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEAKFNKPF 370
Query: 288 IFFIYHKPTDSIVFWGSIYKP 308
+F I + T + +F G + P
Sbjct: 371 VFLIIDQNTKAPLFMGRVVNP 391
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N++F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEI 76
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDEL 135
N++F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEI 76
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 167 MYFILPKNPD-----LSEFTKDLDYDKFSRIIESTNKVD--VIYTIPKMKVTSSTELRTV 219
M+ +LPK+ + L + K L+ + S+ + + V +IPK KV + +
Sbjct: 233 MFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKAC 292
Query: 220 LNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP 279
L + + +F SD S M + +GVA+ V HKV +E+TE G + G I + K
Sbjct: 293 LENLGLKHIFSEDTSDFSGMSETKGVALSNVIHKVCLEITEDGGDSIEVPGARILQ-HKD 351
Query: 280 TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ + PFI+ I H T +I+F+G P
Sbjct: 352 ELNADHPFIYIIRHNKTRNIIFFGKFCSP 380
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 167 MYFILPKNPD-----LSEFTKDLDYDKFSRIIESTNKVD--VIYTIPKMKVTSSTELRTV 219
M+ +LPK+ + L + K L+ + S+ + + V +IPK KV + +
Sbjct: 228 MFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKAC 287
Query: 220 LNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP 279
L + + +F SD S M + +GVA+ V HKV +E+TE G + G I + K
Sbjct: 288 LENLGLKHIFSEDTSDFSGMSETKGVALSNVIHKVXLEITEDGGDSIEVPGARILQ-HKD 346
Query: 280 TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ + PFI+ I H T +I+F+G P
Sbjct: 347 ELNADHPFIYIIRHNKTRNIIFFGKFXSP 375
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 167 MYFILPKNPD-----LSEFTKDLDYDKFSRIIESTNKVD--VIYTIPKMKVTSSTELRTV 219
M+ +LPK+ + L + K L+ + S+ + + V +IPK KV + +
Sbjct: 242 MFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKAS 301
Query: 220 LNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP 279
L + + +F SD S M + +GVA+ V HKV +E+TE G + G I + K
Sbjct: 302 LENLGLKHIFSEDTSDFSGMSETKGVALSNVIHKVSLEITEDGGDSIEVPGARILQ-HKD 360
Query: 280 TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ + PFI+ I H T +I+F+G P
Sbjct: 361 ELNADHPFIYIIRHNKTRNIIFFGKFSSP 389
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDELT---HF-------MGVATGRSLSNKLTAHSLR 85
NV+F+P+++ +L+L +G+ G T +E+ HF G T S NKL++
Sbjct: 41 NVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYSL 100
Query: 86 RGITQMTLD 94
+ I ++ +D
Sbjct: 101 KLIKRLYVD 109
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 195 STNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKV 254
S K V +P+ V +L+ VL + +T +F + ++L+ + D++ + + + HK
Sbjct: 279 SVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEIF-IKDANLTGLSDNKEIFLSKAIHKS 337
Query: 255 DIEVTEQGTVAAASTGII-ITRIS--KPTVKINRPFIFFIYHKPTDSIVFWGSIYKPE 309
+EV E+G+ AAA +G+I I+R++ P V ++ PF F I ++ T +I+F G + PE
Sbjct: 338 FLEVNEEGSEAAAVSGMIAISRMAVLYPQVIVDHPFFFLIRNRRTGTILFMGRVMHPE 395
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 85 RRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATG 144
I ++++M +R+ +++N++F+PLSI A+ ++ LG+ G T+ E+ H MG
Sbjct: 20 EEAIADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGY--- 75
Query: 145 RSLSNNPEAYASFLEKMRNEV 165
SL N E SFL++ N V
Sbjct: 76 DSLKNGEE--FSFLKEFSNMV 94
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 13 RRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
I ++++M +R+ +++N++F+PLSI A+ ++ LG+ G T+ E+ H MG
Sbjct: 20 EEAIADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMG 74
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 195 STNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKV 254
S K V +P+ V +L+ VL + +T +F + ++L+ + D++ + + + HK
Sbjct: 279 SVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEIF-IKDANLTGLSDNKEIFLSKAIHKS 337
Query: 255 DIEVTEQGTVAAASTGII-ITRIS--KPTVKINRPFIFFIYHKPTDSIVFWGSIYKPE 309
+EV E+G+ AAA +G+I I+R++ P V ++ PF F I ++ T +I+F G + PE
Sbjct: 338 FLEVNEEGSEAAAVSGMIAISRMAVLYPQVIVDHPFFFLIRNRRTGTILFMGRVMHPE 395
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 85 RRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATG 144
I ++++M +R+ +++N++F+PLSI A+ ++ LG+ G T+ E+ H MG
Sbjct: 20 EEAIADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGY--- 75
Query: 145 RSLSNNPEAYASFLEKMRNEV 165
SL N E SFL++ N V
Sbjct: 76 DSLKNGEE--FSFLKEFSNMV 94
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 13 RRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
I ++++M +R+ +++N++F+PLSI A+ ++ LG+ G T+ E+ H MG
Sbjct: 20 EEAIADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMG 74
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + E L + R +S ++ +Y +PK ++ L +L + +
Sbjct: 254 FILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELY-LPKFSISRDYNLNDILLQLGIE 312
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-----KPTV 281
F SK+DLS + R +AV QV HK ++V E+GT A+A+T + IT +S + V
Sbjct: 313 EAF-TSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITLLSALVETRTIV 371
Query: 282 KINRPFIFFIYHKPTDSIVFWGSIYKPE 309
+ NRPF+ I T +I F + P+
Sbjct: 372 RFNRPFLMIIVPTDTQNIFFMSKVTNPK 399
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMR 162
++NV+F+P SI ALA + LG+ T E+ G+ + ++ E + SF +R
Sbjct: 48 DKNVIFSPPSISTALAFLSLGAHNTTLTEI--LKGLKFNLTETSEAEIHQSFQHLLR 102
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 EAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
+A+ LY SE F DF + A+A + +N+Y+ + T+ +
Sbjct: 134 DAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKI 170
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 170 ILP-KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
ILP +N ++E+ K L KF +I++ V ++PK K + ++ L ++ +T
Sbjct: 242 ILPDENISVNEYIKTLTGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDA 301
Query: 229 FDVSKSDLSNM--LDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP----TVK 282
F K+D S + D + + +V HK I V E GT A A T + IT P TVK
Sbjct: 302 FLPDKADFSKLGKSDIGNLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKTVK 361
Query: 283 INRPFIFFIYHKPTDSIVFWGSI 305
+NRPFIF I T+ +F G++
Sbjct: 362 LNRPFIFAIIDNSTNLPIFIGTV 384
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 170 ILP-KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
ILP +N ++E+ K L KF +I++ V ++PK K + ++ L ++ +T
Sbjct: 227 ILPDENISVNEYIKTLTGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDA 286
Query: 229 FDVSKSDLSNM--LDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP----TVK 282
F K+D S + D + + +V HK I V E GT A A T + IT P TVK
Sbjct: 287 FLPDKADFSKLGKSDIGNLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKTVK 346
Query: 283 INRPFIFFIYHKPTDSIVFWGSI 305
+NRPFIF I T+ +F G++
Sbjct: 347 LNRPFIFAIIDNSTNLPIFIGTV 369
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 170 ILP-KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
ILP +N ++E+ K L KF +I++ V ++PK K + ++ L ++ +T
Sbjct: 235 ILPDENISVNEYIKTLTGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDA 294
Query: 229 FDVSKSDLSNM--LDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP----TVK 282
F K+D S + D + + +V HK I V E GT A A T + IT P TVK
Sbjct: 295 FLPDKADFSKLGKSDIGNLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKTVK 354
Query: 283 INRPFIFFIYHKPTDSIVFWGSI 305
+NRPFIF I T+ +F G++
Sbjct: 355 LNRPFIFAIIDNSTNLPIFIGTV 377
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ ++L D ++ + ++ +P+ ++ S ++ L
Sbjct: 274 DDITMVLILPKLEKTLAKVEQELTPDMLQEWLDELTETLLVVHMPRFRIEDSFSVKEQLQ 333
Query: 222 TMNVTSMFDVSKSDLSNMLDD--RGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-- 277
M + +F KS L ++ + + V FHK +EV E+G+ AAAST I I S
Sbjct: 334 DMGLEDLFSPEKSRLPGIVAEGRSDLYVSDAFHKAFLEVNEEGSEAAASTVISIAGRSLN 393
Query: 278 --KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ I ++I+F G + P
Sbjct: 394 SDRVTFKANRPFLVLIREVALNTIIFMGRVANP 426
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 163 NEVYMYFILPKN-PDLSEFTKDLDYDKFSRIIESTNKVD---VIYTIPKMKVTSSTELRT 218
E+ M+ +LP + L + + +K S S D +Y +P MK+ L +
Sbjct: 238 GELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVY-LPHMKIEEKYNLTS 296
Query: 219 VLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS- 277
VL + +T +F S ++LS + + + + + H +E+ E G+ A STG+++ S
Sbjct: 297 VLVALGMTDLFSPS-ANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEAASV 355
Query: 278 KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+++ PF+F I H P++SI+F+G P
Sbjct: 356 SEEFRVDHPFLFLIKHNPSNSILFFGRCIFP 386
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 17 TQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTK---DELTHFMGVAT-G 72
T+ DM + ++ V N+N++++PLSI+ L++V LG+ TK +++ HF + G
Sbjct: 9 TEFCFDMFKELK-VHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFG 67
Query: 73 RSLSNKL 79
SL ++
Sbjct: 68 ESLESQC 74
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 83 SLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTK---DELTHF 138
S+ T+ DM + ++ V N+N++++PLSI+ L++V LG+ TK +++ HF
Sbjct: 3 SIGAASTEFCFDMFKELK-VHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHF 60
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + E L + R +S ++ +Y +PK ++ L +L + +
Sbjct: 264 FILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELY-LPKFSISRDYNLNDILLQLGIE 322
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS-----KPTV 281
F SK+DLS + R +AV QV HK ++V E+GT A+ +T + IT +S +
Sbjct: 323 EAF-TSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASGTTAVKITLLSALVETRTIT 381
Query: 282 KINRPFIFFIYHKPTDSIVFWGSIYKPE 309
+ NRPF+ I T +I F + P+
Sbjct: 382 RFNRPFLMIIVPTDTQNIFFMSKVTNPK 409
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMR 162
++NV+F+PLSI ALA + LG+ T E+ G+ + ++ E + SF +R
Sbjct: 58 DKNVIFSPLSISTALAFLSLGAHNTTLTEI--LKGLKFNLTETSEAEIHQSFQHLLR 112
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
++NV+F+PLSI ALA + LG+ T E+
Sbjct: 58 DKNVIFSPLSISTALAFLSLGAHNTTLTEI 87
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 EAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
+A+ LY SE F DF + A+A + +N+Y+ + T+ +
Sbjct: 144 DAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKI 180
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 196 TNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSK--SDLSNMLDDRGVAVDQVFHK 253
T K++V + PK K+ E+ +L M + +F S S+LS M R + V +V +
Sbjct: 313 TRKMEVFF--PKFKLNQRYEMHELLKQMGIRRLFSTSADLSELSAMA--RNLQVSRVLQQ 368
Query: 254 VDIEVTEQGTVAAAST-GIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+EV E+GT A + T II P +K+NRPF F IY + + ++F G + P
Sbjct: 369 SVLEVDERGTEAVSGTLSEIIAYSMPPAIKVNRPFHFIIYEEMSRMLLFLGRVVNP 424
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 4 FLMRSNLILRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTK 60
+ +R++ L + ++ R I M + NV+F+P + A+ ++LG+ G+TK
Sbjct: 50 YWLRASQQLSNETSSFGFNLLRKIS--MRHDGNVIFSPFGLSVAMVNLMLGTKGETK 104
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 103 MTKNQNVVFAPLSIVGALALVLLGSDGQTK 132
M + NV+F+P + A+ ++LG+ G+TK
Sbjct: 75 MRHDGNVIFSPFGLSVAMVNLMLGTKGETK 104
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 163 NEVYMYFILPKNPD--LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVL 220
N++ MYFILP NPD +++ ++ + + + +V T+PK K S +L L
Sbjct: 242 NKLAMYFILP-NPDNTVNQVLDRINSASLHQALWYMEENEVNVTLPKFKFDFSEQLNEPL 300
Query: 221 NTMNVTSMFDVSKSDLSNMLDDRG----VAVDQVFHKVDIEVTEQGTVAAASTGI-IITR 275
+ + +F + S L + RG V V ++F K I + E G+ A A+T I ++ +
Sbjct: 301 QQVGIREIFSQNAS-LPLLARGRGARDEVRVSRIFQKAGITINELGSEAYAATEIQLVNK 359
Query: 276 ISKPTVKI---NRPFIFFIYHKPTDSIVFWGSIYKP 308
V+I NRPFIFFI + +++F G I P
Sbjct: 360 FGGDGVQIFNANRPFIFFIEDETLGTMLFAGKIENP 395
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 176 DLSEFTKDLDYDKF--SRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSK 233
++SE +L +D + E KV +PK+ + +L L+ + + +F
Sbjct: 248 NVSEVLANLTWDTLYHPSLQERPTKV----WLPKLHLQQQLDLVATLSQLGLQELFQ--G 301
Query: 234 SDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPTVKINRPFIFFIYH 293
DL + ++ + V V H+ +E++E G AAA+T + + R+S + +NRPF+FFI
Sbjct: 302 PDLRG-ISEQNLVVSSVQHQSTMELSEAGVEAAAATSVAMNRMSLSSFTVNRPFLFFIME 360
Query: 294 KPTDSIVFWGSIYKPEPQR-PYHENERNN 321
+F GS+ P P P + +R++
Sbjct: 361 DTIGVPLFVGSVRNPNPSALPQLQEQRDS 389
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 12 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVAT 71
L + + T D+ + T + N+V +PLS+ AL+ + LG+ QT L + + T
Sbjct: 21 LAQAMMAFTTDLFSLVAQTSTSS-NLVLSPLSVALALSHLALGAQNQTLHSLHRVLHMNT 79
Query: 72 GRSLSNKLT 80
G L + L+
Sbjct: 80 GSCLPHLLS 88
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 80 TAHSLRR---GITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT 136
TA RR + T D+ + T + N+V +PLS+ AL+ + LG+ QT L
Sbjct: 14 TAEETRRLAQAMMAFTTDLFSLVAQTSTSS-NLVLSPLSVALALSHLALGAQNQTLHSLH 72
Query: 137 HFMGVATGRSLSN 149
+ + TG L +
Sbjct: 73 RVLHMNTGSCLPH 85
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 167 MYFILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
++FILP ++ L D +R V IPK+ ++ +L VL M +
Sbjct: 231 VFFILPDKGKMNTVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIA 290
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPTV-KINR 285
+F ++++ S + D + +V HK +++ E+GT AA + + SKP + + N+
Sbjct: 291 DLF-TTQANFSRITQDAQLKSSKVVHKAVLQLNEEGTEAAGAMFLEAIPRSKPIILRFNQ 349
Query: 286 PFIFFIYHKPTDSIVFWGSIYKP 308
PFI I+ T S +F + P
Sbjct: 350 PFIIMIFDHFTWSSLFLARVMNP 372
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 RRGITQMTLDMERAIRS---VMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
RG+ +D ++ ++ +N+ +P+SI ALA++ LG+ G T+ +L +G
Sbjct: 4 HRGLASANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 62
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 85 RRGITQMTLDMERAIRS---VMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
RG+ +D ++ ++ +N+ +P+SI ALA++ LG+ G T+ +L +G
Sbjct: 4 HRGLASANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 62
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 161 MRNEVYMYFILPKN-----PDLSEFTKDLDYDKFSRIIESTNKVDVIYTI--PKMKVTSS 213
++ E+ M+ +LP + L + ++L Y++ S +S + + + PK +
Sbjct: 275 VKRELSMFILLPDDIKDGTTGLEQLERELTYERLSEWADSKMMTETLVDLHLPKFSLEDR 334
Query: 214 TELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIII 273
+LR L M +T+ F + +D M D + +A+ +V H+ + V E+GT AAA+T +II
Sbjct: 335 IDLRDTLRNMGMTTAF-TTNADFRGMTDKKDLAISKVIHQSFVAVDEKGTEAAAATAVII 393
Query: 274 T 274
+
Sbjct: 394 S 394
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 14 RGITQMTLDMERAIRSV-------------MTKNQNVVFAPLSIVGALALVLLGSDGQTK 60
RG ++ + ME+ S+ +++N+ F+P SI ALAL L + G T
Sbjct: 17 RGSHELEISMEQVSASIGNFTVDLFNKLNETNRDKNIFFSPWSISSALALTYLAAKGSTA 76
Query: 61 DELT---HFMGVATGRSLS 76
E+ HF S S
Sbjct: 77 REMAEVLHFTEAVRAESSS 95
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 86 RGITQMTLDMERAIRSV-------------MTKNQNVVFAPLSIVGALALVLLGSDGQTK 132
RG ++ + ME+ S+ +++N+ F+P SI ALAL L + G T
Sbjct: 17 RGSHELEISMEQVSASIGNFTVDLFNKLNETNRDKNIFFSPWSISSALALTYLAAKGSTA 76
Query: 133 DELT---HFMGVATGRSLS 148
E+ HF S S
Sbjct: 77 REMAEVLHFTEAVRAESSS 95
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGT- 263
+P+MK+ L +VL M +T +F S ++LS + + + Q H E+ E GT
Sbjct: 282 LPRMKMEEKYNLTSVLMAMGITDVFS-SSANLSGISSAESLKISQAVHAAHAEINEAGTE 340
Query: 264 -VAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
V +A G+ +S+ + + PF+F I H T++++F+G P
Sbjct: 341 VVGSAEAGVDAASVSE-EFRADHPFLFCIKHIATNAVLFFGRCVSP 385
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 24 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 53
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 24 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 53
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK L++ K+L + ++ ++ ++ +P+ ++ L+ L
Sbjct: 277 DDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQ 336
Query: 222 TMNVTSMFDVSKSDLSNML----DDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
M + +F KS L ++ DD + V FHK +EV E+G+ AAAST ++I S
Sbjct: 337 DMGLVDLFSPEKSKLPGIVAEGRDD--LYVSDAFHKAFLEVNEEGSAAAASTAVVIAGRS 394
Query: 278 ----KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ T K NRPF+ FI P ++I+F G + P
Sbjct: 395 LNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANP 429
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
FILP + + L + ++ K + +PK + S +L VL ++ ++++
Sbjct: 238 FILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 297
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
F S +DLS + + + V ++ HK +EV E GT AAA+TG I T
Sbjct: 298 F-TSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFT 342
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 20 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKL 79
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 20 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS----- 73
Query: 80 TAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSI 116
+ L RG Q+ ++ + N +F L +
Sbjct: 74 SEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVV 110
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 92 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRS 146
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 20 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS 73
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
FILP + + L + ++ K + +PK + S +L VL ++ ++++
Sbjct: 231 FILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 290
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
F S +DLS + + + V ++ HK +EV E GT AAA+TG I T
Sbjct: 291 F-TSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFT 335
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 20 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKL 79
T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G+ +S
Sbjct: 13 TFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS----- 66
Query: 80 TAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSI 116
+ L RG Q+ ++ + N +F L +
Sbjct: 67 SEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVV 103
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 81 AHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
A S RR T D+ RA+ S +QN+ F+P+SI +LA++ LG+ TK ++ +G
Sbjct: 5 APSSRR---DFTFDLYRALASA-APSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLG 60
Query: 141 VATGRS 146
+ +S
Sbjct: 61 LNLQKS 66
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 196 TNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNM-LDDRGVAVDQVFHKV 254
T ++V + PK K+ E+ +L M + +F +DLS + R + V +V +
Sbjct: 271 TRNMEVFF--PKFKLDQKYEMHELLRQMGIRRIFS-PFADLSELSATGRNLQVSRVLQRT 327
Query: 255 DIEVTEQGTVAAASTGIIITRIS-KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
IEV E+GT A A IT S P +K++RPF F IY + + ++F G + P
Sbjct: 328 VIEVDERGTEAVAGILSEITAYSMPPVIKVDRPFHFMIYEETSGMLLFLGRVVNP 382
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 196 TNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNM-LDDRGVAVDQVFHKV 254
T ++V + PK K+ E+ +L M + +F +DLS + R + V +V +
Sbjct: 309 TRNMEVFF--PKFKLDQKYEMHELLRQMGIRRIFS-PFADLSELSATGRNLQVSRVLQRT 365
Query: 255 DIEVTEQGTVAAASTGIIITRIS-KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
IEV E+GT A A IT S P +K++RPF F IY + + ++F G + P
Sbjct: 366 VIEVDERGTEAVAGILSEITAYSMPPVIKVDRPFHFMIYEETSGMLLFLGRVVNP 420
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQG-- 262
+P+MK+ L +VL M +T +F S ++LS + + + Q H E+ E G
Sbjct: 283 LPRMKMEEKYNLTSVLMAMGITDVFS-SSANLSGISSAESLKISQAVHAAHAEINEAGRE 341
Query: 263 TVAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
V +A G+ +S+ + + PF+F I H T++++F+G P
Sbjct: 342 VVGSAEAGVDAASVSE-EFRADHPFLFCIKHIATNAVLFFGRCVSP 386
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 54
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 54
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 161 MRNEVYMYFILPKN-----PDLSEFTKDLDYDKFSRIIESTNKVDVIYTI--PKMKVTSS 213
++ E+ M+ +LP + L + ++L Y++ S +S + + + PK +
Sbjct: 263 VKRELSMFILLPDDIKDGTTGLEQLERELTYERLSEWADSKMMTETLVDLHLPKFSLEDR 322
Query: 214 TELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIII 273
+LR L M +T+ F + +D M D + +A+ +V H+ + V E+GT A A+T +II
Sbjct: 323 IDLRDTLRNMGMTTAF-TTNADFRGMTDKKDLAISKVIHQSFVAVDEKGTEAVAATAVII 381
Query: 274 T 274
+
Sbjct: 382 S 382
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMRN 163
+++N+ F+P SI ALAL L + G T E+ + ++ + + + K RN
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLTAFNKPRN 123
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HF 66
+++N+ F+P SI ALAL L + G T E+ HF
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHF 101
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 169 FILPKNPDLSEFTKDLD---YDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
F+LPK + + K++R+++ VD+ +PK ++++ +L L M +
Sbjct: 233 FVLPKEGQMESVEAAMSSKTLKKWNRLLQK-GWVDLF--VPKFSISATYDLGATLLKMGI 289
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISK-----PT 280
+ +D S + +D G+ + HK + + E+GT AAA + ++ + P
Sbjct: 290 QHAYS-ENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAAVPEVELSDQPENTFLHPI 348
Query: 281 VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
++I+R F+ I + T SI+F G + P
Sbjct: 349 IQIDRSFMLLILERSTRSILFLGKVVNP 376
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQG-- 262
+P+MK+ L +VL M +T +F S ++LS + + + Q H E+ E G
Sbjct: 283 LPRMKMEEKYNLTSVLMAMGITDVFS-SSANLSGISSAESLKISQAVHAAHAEINEAGRE 341
Query: 263 TVAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
V A G+ +S+ + + PF+F I H T++++F+G P
Sbjct: 342 VVGXAEAGVDAASVSE-EFRADHPFLFCIKHIATNAVLFFGRCVSP 386
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 54
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 54
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQG-- 262
+P+MK+ L +VL M +T +F S ++LS + + + Q H E+ E G
Sbjct: 283 LPRMKMEEKYNLTSVLMAMGITDVFS-SSANLSGISSAESLKISQAVHAAHAEINEAGRE 341
Query: 263 TVAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
V A G+ +S+ + + PF+F I H T++++F+G P
Sbjct: 342 VVGXAEAGVDAASVSE-EFRADHPFLFCIKHIATNAVLFFGRCVSP 386
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 54
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 54
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 178 SEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLS 237
SEF D+D + V + T+PK+K++ E+ L M + S+FD D S
Sbjct: 275 SEFIHDIDRE--------LKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFD--SPDFS 324
Query: 238 NMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP-TVKINRPFIFFIYHKPT 296
+ + + + QV H+ E E G S G+ ++ P +N+PFIF + T
Sbjct: 325 K-ITGKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDT 383
Query: 297 DSIVFWGSIYKP 308
+++F G I P
Sbjct: 384 GALLFIGKILDP 395
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 78 KLTAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTK 132
K+ + L ++ D+ R +RS M+ NV+ +PLS+ AL+ + LG+D +T+
Sbjct: 28 KVPVNKLAAAVSNFGYDLYR-VRSSMSPTTNVLLSPLSVATALSALSLGADERTE 81
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQG-- 262
+P+MK+ L +VL M +T +F S ++LS + + + Q H E+ E G
Sbjct: 282 LPRMKMEEKYNLTSVLMAMGITDVFS-SSANLSGISSAEXLKISQAVHAAHAEINEAGRE 340
Query: 263 TVAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
V A G+ +S+ + + PF+F I H T++++F+G P
Sbjct: 341 VVGXAEAGVDAASVSE-EFRADHPFLFCIKHIATNAVLFFGRCVSP 385
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 24 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 53
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
N+N+ + P++I+ ALA+V LG+ T+ ++
Sbjct: 24 NENIFYCPIAIMSALAMVYLGAKDSTRTQI 53
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 167 MYFILP--KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMN 224
M+ P K LS T L S + ++ + +PK + + +LR L +
Sbjct: 235 MFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLG 294
Query: 225 VTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
+T MF ++D +++ D + V Q KV IEV E GTV ++ST +I++
Sbjct: 295 MTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVPSSSTAVIVS 344
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 32 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRR 86
+K++NVVF+P + LA++ L + G+T+ ++ A G + +K A +LR
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQ----AAMGFKIDDKGMAPALRH 77
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 TKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+K++NVVF+P + LA++ L + G+T+ ++ MG
Sbjct: 27 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMG 63
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 194 ESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHK 253
E+ + ++V ++P+ K+ S L + L + V +F+ SK+DLS M R + + ++ HK
Sbjct: 272 ENLDFIEVNVSLPRFKLEESYTLNSDLARLGVQDLFNSSKADLSGMSGARDIFISKIVHK 331
Query: 254 VDIEVTEQGTVAAASTGIIITRI---SKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+EV E+GT AAA+T I T + + PF+FFI H + SI+F G P
Sbjct: 332 SFVEVNEEGTEAAAATAGIATFCMDDPEENFTADHPFLFFIRHNSSGSILFLGRFSSP 389
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 17 TQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HFMGVATGR 73
T+ LD+ A+ S N+ +P SI A+A+V LG+ G T +L+ HF V
Sbjct: 19 TRFALDLFLAL-SENNPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFNTVEEVH 77
Query: 74 SLSNKLTAHSLRRGIT 89
S L A +RG +
Sbjct: 78 SRFQSLNADINKRGAS 93
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 89 TQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HFMGVATGR 145
T+ LD+ A+ S N+ +P SI A+A+V LG+ G T +L+ HF V
Sbjct: 19 TRFALDLFLAL-SENNPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFNTVEEVH 77
Query: 146 SLSNNPEA-----YASFLEKMRNEVY---MYFILPK 173
S + A AS++ K+ N +Y Y LP+
Sbjct: 78 SRFQSLNADINKRGASYILKLANRLYGEKTYNFLPE 113
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 233 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 292
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
F + +DLS + ++ + + + HK + + E+GT AA +
Sbjct: 293 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 331
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 30 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 82
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 30 NIFFSPVSIATAFAMLSLGTKADTHDEI 57
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 229 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 288
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
F + +DLS + ++ + + + HK + + E+GT AA +
Sbjct: 289 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 327
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 26 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 78
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 26 NIFFSPVSIATAFAMLSLGTKADTHDEI 53
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 241 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 300
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
F + +DLS + ++ + + + HK + + E+GT AA +
Sbjct: 301 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 339
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 38 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 90
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 38 NIFFSPVSIATAFAMLSLGTKADTHDEI 65
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 252 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 311
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
F + +DLS + ++ + + + HK + + E+GT AA +
Sbjct: 312 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 350
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N++F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEI 76
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDEL 135
N++F+P+SI A A++ LG+ G T DE+
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEI 76
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 237 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 296
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
F + +DLS + ++ + + + HK + + E+GT AA +
Sbjct: 297 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 335
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 34 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 86
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 34 NIFFSPVSIATAFAMLSLGTKADTHDEI 61
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+P+ KV S +L+ L TM + +F+ +DLS M RG+ + V HK +EVTE+G
Sbjct: 295 LPRFKVEESYDLKDTLRTMGMVDIFN-GDADLSGMTGSRGLVLSGVLHKAFVEVTEEGAE 353
Query: 265 AAASTGIIITRISKPT-----VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
AAA+T ++ S PT N PF+FFI T+SI+F+G P
Sbjct: 354 AAAATAVVGFG-SSPTSTNEEFHCNHPFLFFIRQNKTNSILFYGRFSSP 401
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 81 AHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT---H 137
++SL T+ D+ + R +K N+ ++P+SI AL +VLLG+ T ++ H
Sbjct: 12 SNSLSEANTKFMFDLFQQFRK--SKENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLH 69
Query: 138 FMGV---ATGRS 146
F V TG++
Sbjct: 70 FDQVTENTTGKA 81
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 12 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT---HFMG 68
L T+ D+ + R +K N+ ++P+SI AL +VLLG+ T ++ HF
Sbjct: 15 LSEANTKFMFDLFQQFRK--SKENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLHFDQ 72
Query: 69 VATGRSLSNKLTAHSLRRG 87
V T + T H R G
Sbjct: 73 V-TENTTGKAATYHVDRSG 90
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+PK K+ + L L M + +FD +++ + D R +A+D H+ I V E+GT
Sbjct: 375 LPKFKLEKNYNLVESLKLMGIRMLFD-KNGNMAGISDQR-IAIDLFKHQGTITVNEEGTQ 432
Query: 265 AAASTGIIITRIS-KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
A T + +S + ++RPF+F IY T ++F G + P
Sbjct: 433 ATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANP 477
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 18 QMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDE---LTHFMGVATGRS 74
+ ++ R ++ + N+ AP+ I A+ ++ LG G+T ++ + HF S
Sbjct: 113 KFAFNLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASS 172
Query: 75 LSNKLTAHSLRRGITQ 90
T H+L R +T
Sbjct: 173 KYEITTIHNLFRKLTH 188
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+PK K+ + L L M + +FD +++ + D R +A+D H+ I V E+GT
Sbjct: 375 LPKFKLEKNYNLVESLKLMGIRMLFD-KNGNMAGISDQR-IAIDLFKHQGTITVNEEGTQ 432
Query: 265 AAASTGIIITRIS-KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
A T + +S + ++RPF+F IY T ++F G + P
Sbjct: 433 ATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANP 477
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 18 QMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDE---LTHFMGVATGRS 74
+ ++ R ++ + N+ AP+ I A+ ++ LG G+T ++ + HF S
Sbjct: 113 KFAFNLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASS 172
Query: 75 LSNKLTAHSLRRGITQ 90
T H+L R +T
Sbjct: 173 KYEITTIHNLFRKLTH 188
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ ++ +PK+ +T + +L++VL + +T +
Sbjct: 237 FFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKV 296
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAA 266
F + +DLS + ++ + + + HK + + E+GT AA
Sbjct: 297 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAA 333
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 34 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAQIHEGFQELLR 86
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 34 NIFFSPVSIATAFAMLSLGTKADTHDEI 61
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + E L + R +S ++ +Y +PK ++ L +L + +
Sbjct: 253 FILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELY-LPKFSISRDYNLNDILLQLGIE 311
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
F SK+DLS + R +AV QV HK ++V E+GT A+A+T + IT
Sbjct: 312 EAF-TSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKIT 358
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMR 162
++NV+F+PLSI ALA + LG+ T E+ G+ + ++ E + SF +R
Sbjct: 47 DKNVIFSPLSISTALAFLSLGAHNTTLTEI--LKGLKFNLTETSEAEIHQSFQHLLR 101
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
++NV+F+PLSI ALA + LG+ T E+
Sbjct: 47 DKNVIFSPLSISTALAFLSLGAHNTTLTEI 76
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 EAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
+A+ LY SE F DF + A+A + +N+Y+ + T+ +
Sbjct: 133 DAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKI 169
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 203 YTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDD----RGVAVDQVFHKVDIEV 258
+ IPK K + + VL + +TS F + L+ M++ + + V +FHK IEV
Sbjct: 277 FKIPKFKFSFGFDASNVLKGLGLTSPFS-GEEGLTEMVESPEMGKNLCVSNIFHKACIEV 335
Query: 259 TEQGT-VAAASTGIIITR---ISKPTVKI--NRPFIFFIYHKPTDSIVFWGSIYKP 308
E+GT AAAS G+I R + + + + PF+ + T ++F G + P
Sbjct: 336 NEEGTEAAAASAGVIKLRGLLMEEDEIDFVADHPFLLVVTENITGVVLFIGQVVDP 391
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 18 QMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 67
Q+++++ + + + +++N NV+F+P SI L+++ GS G TKD++ F+
Sbjct: 14 QVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSFL 63
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 90 QMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 139
Q+++++ + + + +++N NV+F+P SI L+++ GS G TKD++ F+
Sbjct: 14 QVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSFL 63
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSM 228
F LP L +L +D ++ +E+ + ++ +PK+ +T + +L++VL + +T +
Sbjct: 227 FFLPDEGKLQHLENELTHDIITKFLENDRRSASLH-LPKLSITGTYDLKSVLGQLGITKV 285
Query: 229 FDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
F + +DLS + ++ + + + HK + + E+GT AA +
Sbjct: 286 FS-NGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 324
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEA--YASFLEKMR 162
N+ F+P+SI A A++ LG+ T DE+ + +L+ PEA + F E +R
Sbjct: 24 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF----NLTEIPEAAIHEGFQELLR 76
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDEL 63
N+ F+P+SI A A++ LG+ T DE+
Sbjct: 24 NIFFSPVSIATAFAMLSLGTKADTHDEI 51
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 167 MYFILPKNPD-LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
M ILP N D L ++L F + +S + + + IPK KVT S L L + +
Sbjct: 196 MVVILPDNIDGLESIEQNLTDTNFKKWSDSMDAMFIDVHIPKFKVTGSYNLVDALVKLGL 255
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGII 272
T +F S D SNM + V+VD + HK I+V E+ T AAA+T +
Sbjct: 256 TEVFG-STGDYSNM-SNSDVSVDAMIHKTYIDVNEEYTEAAAATSAL 300
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 21 LDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 67
+D+ R I S M K +NV +P SI L ++ G++G T ++L+ ++
Sbjct: 1 MDIFREIASSM-KGENVFISPPSISSVLTILYYGANGSTAEQLSKYV 46
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 93 LDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 139
+D+ R I S M K +NV +P SI L ++ G++G T ++L+ ++
Sbjct: 1 MDIFREIASSM-KGENVFISPPSISSVLTILYYGANGSTAEQLSKYV 46
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 167 MYFILPKNPD-LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
M ILP N D L ++L F + +S + + + IPK KVT S L L + +
Sbjct: 141 MVVILPDNIDGLESIEQNLTDTNFKKWSDSMDAMFIDVHIPKFKVTGSYNLVDALVKLGL 200
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGII 272
T +F S D SNM + V+VD + HK I+V E+ T AAA+T +
Sbjct: 201 TEVFG-STGDYSNM-SNSDVSVDAMIHKTYIDVNEEYTEAAAATSAL 245
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + E L + R +S ++ +Y +PK ++ L +L + +
Sbjct: 234 FILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELY-LPKFSISRDYNLNDILLQLGIE 292
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
F SK+DLS + R +AV QV HK ++V E+G A+A+T + IT
Sbjct: 293 EAF-TSKADLSGITGARNLAVSQVVHKAVLDVFEEGREASAATAVKIT 339
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMR 162
++NV+F+PLSI ALA + LG+ T E+ G+ + ++ E + SF +R
Sbjct: 28 DKNVIFSPLSISTALAFLSLGAHNTTLTEI--LKGLKFNLTETSEAEIHQSFQHLLR 82
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
++NV+F+PLSI ALA + LG+ T E+
Sbjct: 28 DKNVIFSPLSISTALAFLSLGAHNTTLTEI 57
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 EAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
+A+ LY SE F DF + A+A + +N+Y+ + T+ +
Sbjct: 114 DAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKI 150
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 195 STNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKV 254
S K V +P+ V +L+ +L + VT +F + ++L+ M D + + + + HK
Sbjct: 182 SVKKQKVEVYLPRFTVEQEIDLKDILKALGVTEIF-IKDANLTAMSDKKELFLSKAVHKS 240
Query: 255 DIEVTEQGTVAAASTGII 272
IEV E+G+ AAA++G+I
Sbjct: 241 CIEVNEEGSEAAAASGMI 258
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + E L + R +S ++ +Y +PK ++ L +L + +
Sbjct: 234 FILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELY-LPKFSISRDYNLNDILLQLGIE 292
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
F SK+DLS + R +AV QV HK ++V E+GT +A+T + IT
Sbjct: 293 EAF-TSKADLSGITGARNLAVSQVVHKAVLDVFEEGTERSAATAVKIT 339
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMR 162
++NV+F+PLSI ALA + LG+ T E+ G+ + ++ E + SF +R
Sbjct: 28 DKNVIFSPLSISTALAFLSLGAHNTTLTEI--LKGLKFNLTETSEAEIHQSFQHLLR 82
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
++NV+F+PLSI ALA + LG+ T E+
Sbjct: 28 DKNVIFSPLSISTALAFLSLGAHNTTLTEI 57
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 EAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
+A+ LY SE F DF + A+A + +N+Y+ + T+ +
Sbjct: 114 DAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKI 150
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + E L + R +S ++ +Y +PK ++ L +L + +
Sbjct: 234 FILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELY-LPKFSISRDYNLNDILLQLGIE 292
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT 274
F SK+DLS + R +AV QV HK ++V E+GT A+ +T + IT
Sbjct: 293 EAF-TSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASRATAVKIT 339
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMR 162
++NV+F+PLSI ALA + LG+ T E+ G+ + ++ E + SF +R
Sbjct: 28 DKNVIFSPLSISTALAFLSLGAHNTTLTEI--LKGLKFNLTETSEAEIHQSFQHLLR 82
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
++NV+F+PLSI ALA + LG+ T E+
Sbjct: 28 DKNVIFSPLSISTALAFLSLGAHNTTLTEI 57
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 EAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
+A+ LY SE F DF + A+A + +N+Y+ + T+ +
Sbjct: 114 DAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKI 150
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 168 YFILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTS 227
+FILP + L D R + V IPK ++ + +L+ VL +N+
Sbjct: 231 FFILPDQGQMDTVIAALSRDTIDRWGKLMTPRQVNLYIPKFSMSDTYDLKDVLEDLNIKD 290
Query: 228 MFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP-TVKINRP 286
+ ++SD S D + + V HK +++ E + ++ G + S+P +K N+P
Sbjct: 291 LL-TNQSDFSGNTKDVPLTLTMV-HKAMLQLDEGNVLPNSTNGAPLHLRSEPLDIKFNKP 348
Query: 287 FIFFIYHKPTDSIVFWGSIYKP 308
FI ++ K T S + + P
Sbjct: 349 FILLLFDKFTWSSLMMSQVVNP 370
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 167 MYFILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVT 226
++FILP ++ L D +R V IPK+ ++ +L VL M +
Sbjct: 232 VFFILPDKGKMNTVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIA 291
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIII 273
+F ++++ S + D + +V HK +++ E+G A STG+ +
Sbjct: 292 DLF-TNQANFSRITQDAQLKSSKVVHKAVLQLNEEGVDTAGSTGVTL 337
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 RRGITQMTLDMERAIRS---VMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
RG+ +D ++ ++ +N+ +P+SI ALA++ LG+ G T+ +L +G
Sbjct: 5 HRGLASANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 63
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 85 RRGITQMTLDMERAIRS---VMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
RG+ +D ++ ++ +N+ +P+SI ALA++ LG+ G T+ +L +G
Sbjct: 5 HRGLASANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 63
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 195 STNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKV 254
S K V +P+ V +L+ VL + +T +F + ++L+ + D++ + + + HK
Sbjct: 279 SVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEIF-IKDANLTGLSDNKEIFLSKAIHKS 337
Query: 255 DIEVTEQGTVAAASTGII-ITR 275
+EV E+G+ AAA +G+I I+R
Sbjct: 338 FLEVNEEGSEAAAVSGMIAISR 359
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 85 RRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATG 144
I ++++M +R+ +++N++F+PLSI A+ ++ LG+ G T+ E+ H MG
Sbjct: 20 EEAIADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGY--- 75
Query: 145 RSLSNNPEAYASFLEKMRNEV 165
SL N E SFL++ N V
Sbjct: 76 DSLKNGEE--FSFLKEFSNMV 94
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 13 RRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
I ++++M +R+ +++N++F+PLSI A+ ++ LG+ G T+ E+ H MG
Sbjct: 20 EEAIADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMG 74
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 151 PEAYASFLEKMR--NEVYMYFILPKNPD-LSEFTKDL-DYDKFSRIIESTNKVDVIYTIP 206
PE A +E ++ M ILP D ++ + L D SR E +V T+P
Sbjct: 215 PELDAKMIEMSYEGDQASMIIILPNQVDGITALEQKLKDPKALSRAEERLYNTEVEITLP 274
Query: 207 KMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDR-GVAVDQVFHKVDIEVTEQGTVA 265
K K+ ++T+L+ VL+ MN+ +F + L N+L + + VD K IEV E+G A
Sbjct: 275 KFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQKAFIEVNEEGAEA 334
Query: 266 AAST--GII-ITRISKPTVKINRPFIFFIYHKPTDSI-VFWGSIYKP 308
AA+ GI+ + I P V I+RPF F + D I +F G + +P
Sbjct: 335 AAANAFGIVPKSLILYPEVHIDRPFYFELK---IDGIPMFNGKVIEP 378
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 107 QNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGR-------SLSNNPEAYASFLE 159
QNVV + S++ L + L S G++ DEL + + L+ A
Sbjct: 33 QNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNRGVRAVKGVDL 92
Query: 160 KMRNEVYMYFILPKNPDLSEFTKDL 184
KM +++Y+ L N D + ++D+
Sbjct: 93 KMASKIYVAKGLELNDDFAAVSRDV 117
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 151 PEAYASFLEKMR--NEVYMYFILPKNPD-LSEFTKDL-DYDKFSRIIESTNKVDVIYTIP 206
PE A +E ++ M ILP D ++ + L D SR E +V +P
Sbjct: 215 PELDAKMIEMSYEGDQASMIIILPNQVDGITALEQKLKDPKALSRAEERLYNTEVEIYLP 274
Query: 207 KMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDR-GVAVDQVFHKVDIEVTEQGTVA 265
K K+ ++T+L+ VL+ MN+ +F + L N+L + + VD K IEV E+G A
Sbjct: 275 KFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLYVDAAIQKAFIEVNEEGAEA 334
Query: 266 AASTGIIITRIS---KPTVKINRPFIF 289
AA+ IT S P V+IN+PF F
Sbjct: 335 AAANAFKITTYSFHFVPKVEINKPFFF 361
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 11 ILRRGITQMTLDMERAIRSVMTKN--QNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
ILR Q T M V+ N QNVV + S++ L + L S G++ DEL +
Sbjct: 10 ILRESNDQFTAQM---FSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALA 66
Query: 69 V 69
+
Sbjct: 67 L 67
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 107 QNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGR-------SLSNNPEAYASFLE 159
QNVV + S++ L + L S G++ DEL + + L+ A
Sbjct: 33 QNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNRGVRAVKGVDL 92
Query: 160 KMRNEVYMYFILPKNPDLSEFTKDL 184
KM +++Y+ L N D + ++D+
Sbjct: 93 KMASKIYVAKGLELNDDFAAVSRDV 117
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 167 MYFILPKNPD-LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
M ILP N D L ++L F + +S + + + IPK KVT S L L + +
Sbjct: 196 MVVILPDNIDGLESIEQNLTDTNFKKWCDSMDAMFIDVHIPKFKVTGSYNLVDALVKLGL 255
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGT 263
T +F S D SNM + V+VD + HK I+V E+ T
Sbjct: 256 TEVFG-STGDYSNMCN-SDVSVDAMIHKTYIDVNEEYT 291
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 21 LDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 67
+D+ R I S M K +NV +P SI L ++ G++G T ++L+ ++
Sbjct: 1 MDIFREIASSM-KGENVFISPPSISSVLTILYYGANGSTAEQLSKYV 46
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 93 LDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 139
+D+ R I S M K +NV +P SI L ++ G++G T ++L+ ++
Sbjct: 1 MDIFREIASSM-KGENVFISPPSISSVLTILYYGANGSTAEQLSKYV 46
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 202 IYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKS-DLSNMLDDRGVAVDQVFHKVDIEVTE 260
+ T+P++KVT+S ++ L+ M FD S +L + +D + V + H+ +E+TE
Sbjct: 285 LLTLPRIKVTTSQDM---LSIMEKLEFFDFSYDLNLCGLTEDPDLQVSAMQHQTVLELTE 341
Query: 261 QGTVAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
G AAA++ I + R + ++ +PF+F ++ + VF G +Y P
Sbjct: 342 TGVEAAAASAISVAR-TLLVFEVQQPFLFMLWDQQHKFPVFMGRVYDP 388
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 74 SLSNKLTAHS----LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDG 129
+L + L +HS L + +L + A ++ N+ F+P SI L VLLG+
Sbjct: 18 TLCSDLESHSTEAVLGDALVDFSLKLYHAFSAMKKVETNMAFSPFSIASLLTQVLLGAGE 77
Query: 130 QTKDEL 135
TK L
Sbjct: 78 NTKTNL 83
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 190 SRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQ 249
S +++ + V +PK + ++ +L L ++ V +FD KSDLS + + + V++
Sbjct: 280 SEYVKNLKETTVSLRLPKFTLKNTLDLVPTLKSIGVVDLFDPVKSDLSGITPNPNLYVNE 339
Query: 250 VFHKVDIEVTEQGTVAAASTGIIITRISK--PTVK--INRPFIFFIYHK 294
+++ E G A T I S P V + PFI FIY +
Sbjct: 340 FIQTNVLKLNESGIEATTVTSPIFVPFSAIIPEVDFHVTHPFICFIYDQ 388
>pdb|4AU2|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU4|A Chain A, Crystal Structure Of Hsp47
pdb|4AU4|B Chain B, Crystal Structure Of Hsp47
pdb|4AU4|C Chain C, Crystal Structure Of Hsp47
pdb|4AU4|D Chain D, Crystal Structure Of Hsp47
pdb|4AU4|E Chain E, Crystal Structure Of Hsp47
pdb|4AU4|F Chain F, Crystal Structure Of Hsp47
pdb|4AU4|G Chain G, Crystal Structure Of Hsp47
pdb|3ZHA|A Chain A, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|B Chain B, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|C Chain C, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|D Chain D, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|K Chain K, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|L Chain L, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|P Chain P, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|Q Chain Q, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition
Length = 392
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 177 LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDL 236
L K L ++ + K V ++PK V + +L+ L + +T D +K+DL
Sbjct: 244 LERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADL 303
Query: 237 SNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPTVKI---NRPFIFFIYH 293
S M + + + VFH E +G I R + K+ + PFIF +
Sbjct: 304 SRMSGKKDLYLASVFHATAFEWDTEGNPFDQD---IYGREELRSPKLFYADHPFIFLVRD 360
Query: 294 KPTDSIVFWGSIYKPE 309
+ S++F G + +P+
Sbjct: 361 TQSGSLLFIGRLVRPK 376
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 169 FILPKNPDLSEFTKDLDYDKFSRIIESTNK--VDVIYTIPKMKVTSSTELRTVLNTMNVT 226
FILP + + L + + S +D ++ +PK +++ L VL+ + +
Sbjct: 254 FILPDQGRMQQVEASLQPETLRKWKNSLKPRMIDELH-LPKFSISTDYSLEDVLSKLGIR 312
Query: 227 SMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP----TVK 282
+F +++DLS + + + V QV HK ++V E GT AAA+TG+ +S TV
Sbjct: 313 EVFS-TQADLSAITGTKDLRVSQVVHKAVLDVAETGTEAAAATGVKFVPMSAKLYPLTVY 371
Query: 283 INRPFIFFIYHKPTDSIVFWGSIYKPE 309
NRPF+ I+ T+ F I P+
Sbjct: 372 FNRPFLIMIFDTETEIAPFIAKIANPK 398
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 34 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
+ N+VF+PLSI ALALV LG+ G T +E+
Sbjct: 48 DTNIVFSPLSISAALALVSLGAKGNTLEEI 77
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 106 NQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
+ N+VF+PLSI ALALV LG+ G T +E+
Sbjct: 48 DTNIVFSPLSISAALALVSLGAKGNTLEEI 77
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 318 ERNNEAEELYQSEIFRLDFGNPASA-RFVNNYILSATKSAL 357
E +A+ LYQ+E F DF P A + +N+Y+ T+ +
Sbjct: 130 EFQEKAKTLYQAEAFTADFQQPRQAKKLINDYVRKQTQGMI 170
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 204 TIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRG-VAVDQVFHKVDIEVTEQG 262
+PK K+ S+ + + VL + V F ++DLS + ++G + + + K I+V+E+G
Sbjct: 267 ALPKFKIESTVDFKKVLKKLGVKKAFG-DEADLSGIAGEKGDLVISNIVQKSFIDVSEEG 325
Query: 263 TVAAASTGI--IITRISKPTVK----INRPFIFFIYHKPTDSIVFWGSI 305
AAA+T I I+ ++ P ++ PFIF+I K I+F G +
Sbjct: 326 VEAAAATYIPVILPEMALPDSPKQFIVDHPFIFYI--KVKGMILFAGRV 372
>pdb|4AU3|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 197 NKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDI 256
K V ++PK V + +L+ L + +T D +KSDLS + + + VFH
Sbjct: 264 QKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKSDLSRXSGKKDLYLASVFHATAF 323
Query: 257 EVTEQGTVAAASTGIIITRISKPTVKI---NRPFIFFIYHKPTDSIVFWGSIYKPE 309
E +G I R + K+ + PFIF + + S++F G + +P+
Sbjct: 324 EWDTEGNPFDQD---IYGREELRSPKLFYADHPFIFLVRDTQSGSLLFIGRLVRPK 376
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 169 FILPKNPDLSEFTKDLD---YDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
F+LPK + + K++R+++ VD+ +PK ++++ +L L M +
Sbjct: 232 FVLPKEGQMESVEAAMSSKTLKKWNRLLQK-GWVDLF--VPKFSISATYDLGATLLKMGI 288
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
+ +D S + +D G+ + HK + + E+GT AA +
Sbjct: 289 QHAYS-ENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAGA 330
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 169 FILPKNPDLSEFTKDLD---YDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
F+LPK + + K++R+++ VD+ +PK ++++ +L L M +
Sbjct: 238 FVLPKEGQMESVEAAMSSKTLKKWNRLLQK-GWVDLF--VPKFSISATYDLGATLLKMGI 294
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
+ +D S + +D G+ + HK + + E+GT AA +
Sbjct: 295 QHAYS-ENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAGA 336
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 169 FILPKNPDLSEFTKDLD---YDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
F+LPK + + K++R+++ VD+ +PK ++++ +L L M +
Sbjct: 237 FVLPKEGQMESVEAAMSSKTLKKWNRLLQK-GWVDLF--VPKFSISATYDLGATLLKMGI 293
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
+ +D S + +D G+ + HK + + E+GT AA +
Sbjct: 294 QHAYS-ENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAGA 335
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 169 FILPKNPDLSEFTKDLD---YDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
F+LPK + + K++R+++ VD+ +PK ++++ +L L M +
Sbjct: 238 FVLPKEGQMESVEAAMSSKTLKKWNRLLQK-GWVDLF--VPKFSISATYDLGATLLKMGI 294
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
+ +D S + +D G+ + HK + + E+GT AA +
Sbjct: 295 QHAYS-ENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAGA 336
>pdb|4AU3|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 197 NKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDI 256
K V ++PK V + +L+ L + +T D +K+DLS + + + VFH
Sbjct: 264 QKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADLSRXSGKKDLYLASVFHATAF 323
Query: 257 EVTEQGTVAAASTGIIITRISKPTVKI---NRPFIFFIYHKPTDSIVFWGSIYKPE 309
E +G I R + K+ + PFIF + + S++F G + +P+
Sbjct: 324 EWDTEGNPFDQD---IYGREELRSPKLFYADHPFIFLVRDTQSGSLLFIGRLVRPK 376
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 164 EVYMYFILPKNPD-----LSEFTKDLDYDKFSRIIESTN--KVDVIYTIPKMKVTSSTEL 216
E+ M +LP + + L + K L DK + N +V +P+ K+ S +L
Sbjct: 226 ELSMIILLPDDIEDESTGLEKIEKQLTLDKLREWTKPENLYLAEVNVHLPRFKLEESYDL 285
Query: 217 RTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHK 253
+ L + V +F+ K+DLS M R + V ++ HK
Sbjct: 286 TSHLARLGVQDLFNRGKADLSGMSGARDLFVSKIIHK 322
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 17 TQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT 64
T +D+ RA+ N+ +PLSI ALA++ LG+ G T +++
Sbjct: 10 THFAVDLFRALNES-DPTGNIFISPLSISSALAMIFLGTRGNTAAQVS 56
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 89 TQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT 136
T +D+ RA+ N+ +PLSI ALA++ LG+ G T +++
Sbjct: 10 THFAVDLFRALNES-DPTGNIFISPLSISSALAMIFLGTRGNTAAQVS 56
>pdb|2X0B|B Chain B, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|D Chain D, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|F Chain F, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|H Chain H, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 452
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 204 TIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGT 263
T+P++ + S +L+ +L + ++ ++ +L + +DR + V +V + + E+
Sbjct: 347 TMPQLVLQGSYDLQDLLAQAELPAILH-TELNLQKLSNDR-IRVGEVLNSIFFELEADER 404
Query: 264 VAAASTGIIITRISKPTV---KINRPFIFFIYHKPTDSIVFWGSIYKP 308
ST +++KP V +NRPF+F +Y + ++ F G + P
Sbjct: 405 EPTEST----QQLNKPEVLEVTLNRPFLFAVYDQSATALHFLGRVANP 448
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 38 VFAPLSIVGALALVLLGSDGQTKDELTHFMGVA-TGRSLSNKLTAHSLRRGITQMTLDME 96
V +P ++ G LA + LG+ T D L +GV ++ +++L AH
Sbjct: 100 VLSPTAVFGTLASLYLGALDHTADRLQAILGVPWKDKNCTSRLDAHK------------- 146
Query: 97 RAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYAS 156
V + L V L + +D Q + L+ +GV T L
Sbjct: 147 -------------VLSALQAVQGLLVAQGRADSQAQLLLSTVVGVFTAPGL----HLKQP 189
Query: 157 FLEKMRNEVYMYFILPKNPDLSEFTKDLDYDKFSRIIES 195
F++ + +Y +LP++ D +E D+ +K R +++
Sbjct: 190 FVQGL--ALYTPVVLPRSLDFTEL--DVAAEKIDRFMQA 224
>pdb|2WXW|A Chain A, Crystal Structure Of Human Angiotensinogen
Length = 453
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 204 TIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGT 263
T+P++ + S +L+ +L + ++ ++ +L + +DR + V +V + + E+
Sbjct: 348 TMPQLVLQGSYDLQDLLAQAELPAILH-TELNLQKLSNDR-IRVGEVLNSIFFELEADER 405
Query: 264 VAAASTGIIITRISKPTV---KINRPFIFFIYHKPTDSIVFWGSIYKP 308
ST +++KP V +NRPF+F +Y + ++ F G + P
Sbjct: 406 EPTEST----QQLNKPEVLEVTLNRPFLFAVYDQSATALHFLGRVANP 449
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 38 VFAPLSIVGALALVLLGSDGQTKDELTHFMGVA-TGRSLSNKLTAHSLRRGITQMTLDME 96
V +P ++ G LA + LG+ T D L +GV ++ +++L AH
Sbjct: 101 VLSPTAVFGTLASLYLGALDHTADRLQAILGVPWKDKNCTSRLDAHK------------- 147
Query: 97 RAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYAS 156
V + L V L + +D Q + L+ +GV T L
Sbjct: 148 -------------VLSALQAVQGLLVAQGRADSQAQLLLSTVVGVFTAPGL----HLKQP 190
Query: 157 FLEKMRNEVYMYFILPKNPDLSEFTKDLDYDKFSRIIES 195
F++ + +Y +LP++ D +E D+ +K R +++
Sbjct: 191 FVQGL--ALYTPVVLPRSLDFTEL--DVAAEKIDRFMQA 225
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 196 TNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNM-LDDRGVAVDQVFHKV 254
T ++V + PK K+ E+ +L M + +F +DLS + R + V +V +
Sbjct: 309 TRNMEVFF--PKFKLDQKYEMHELLRQMGIRRIFS-PFADLSELSATGRNLQVSRVLQRT 365
Query: 255 DIEVTEQGTVAAASTGII 272
IEV E+GT A A GI+
Sbjct: 366 VIEVDERGTEAVA--GIL 381
>pdb|9PAI|B Chain B, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 33
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 281 VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ ++RPF+F + H PT +++F G + +P
Sbjct: 6 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 33
>pdb|1M93|A Chain A, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 55
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 21 LDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 67
+D+ R I S M K +NV +P SI L ++ G++G T ++L+ ++
Sbjct: 1 MDIFREIASSM-KGENVFISPPSISSVLTILYYGANGSTAEQLSKYV 46
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 93 LDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFM 139
+D+ R I S M K +NV +P SI L ++ G++G T ++L+ ++
Sbjct: 1 MDIFREIASSM-KGENVFISPPSISSVLTILYYGANGSTAEQLSKYV 46
>pdb|2WXZ|C Chain C, Crystal Structure Of Rat Angiotensinogen In C2 Space Group
pdb|2WY1|A Chain A, Crystal Structure Of Rat Angiotensinogen In P321 Space
Group
pdb|2WY1|B Chain B, Crystal Structure Of Rat Angiotensinogen In P321 Space
Group
Length = 453
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 204 TIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVT---- 259
T+P++++ S L+ +L ++++ ++++L M D V +V + + +E+
Sbjct: 347 TLPQLEIRGSYNLQDLLAQAKLSTLLG-AEANLGKM-GDTNPRVGEVLNSILLELQAGEE 404
Query: 260 EQGTVAAASTGIIITRISKPTV---KINRPFIFFIYHKPTDSIVFWGSIYKPE 309
EQ T +A G P V ++ PF+F IY + + ++ F G + P+
Sbjct: 405 EQPTESAQQPG-------SPEVLDVTLSSPFLFAIYERDSGALHFLGRVDNPQ 450
>pdb|2WXZ|A Chain A, Crystal Structure Of Rat Angiotensinogen In C2 Space Group
Length = 453
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 204 TIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVT---- 259
T+P++++ S L+ +L ++++ ++++L M D V +V + + +E+
Sbjct: 347 TLPQLEIRGSYNLQDLLAQAKLSTLLG-AEANLGKM-GDTNPRVGEVLNSILLELQAGEE 404
Query: 260 EQGTVAAASTGIIITRISKPTV---KINRPFIFFIYHKPTDSIVFWGSIYKPE 309
EQ T +A G P V ++ PF+F IY + + ++ F G + P+
Sbjct: 405 EQPTESAQQPG-------SPEVLDVTLSSPFLFAIYERDSGALHFLGRVDNPQ 450
>pdb|1HLE|B Chain B, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 31
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 284 NRPFIFFIYHKPTDSIVFWGSIYKP 308
+ PFIFFI H P+ +I+F G P
Sbjct: 7 DHPFIFFIRHNPSANILFLGRFSSP 31
>pdb|2WXX|A Chain A, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXX|B Chain B, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXX|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXX|D Chain D, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXY|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Reduced
Form
pdb|2WY0|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form With Space Group P6122
Length = 453
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 193 IESTNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFH 252
IE+ + T+P++++ S L+ +L + ++ ++++L+N + D V +V +
Sbjct: 336 IENPPPRAIRLTLPQLEIRGSYNLQDLLAEDKLPTLLG-AEANLNN-IGDTNPRVGEVLN 393
Query: 253 KVDIEVT----EQGTVAAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ +E+ EQ T + G V ++ PF+F IY + + ++ F G + P
Sbjct: 394 SILLELKAGEEEQPTTSVQQPG----SPEALDVTLSSPFLFAIYEQDSGTLHFLGRVNNP 449
Query: 309 E 309
+
Sbjct: 450 Q 450
>pdb|1D5S|B Chain B, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 41
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 273 ITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
I R P VK N+PF+F + + T S +F G + P
Sbjct: 3 IPRSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 38
>pdb|4AFX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|B Chain B, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 36
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 278 KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
P +KI+RPF F IY + + ++F G + P
Sbjct: 3 PPVIKIDRPFHFMIYEETSGMLLFLGRVVNP 33
>pdb|3F02|C Chain C, Cleaved Human Neuroserpin
pdb|3F02|D Chain D, Cleaved Human Neuroserpin
Length = 48
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 279 PTVKINRPFIFFIYHKPTDSIVFWGSIYKPEPQRPYHENERNNEAEEL 326
P V ++ PF F I ++ T +I+F G + PE N ++ EEL
Sbjct: 6 PQVIVDHPFFFLIRNRRTGTILFMGRVMHPETM-----NTSGHDFEEL 48
>pdb|1ZKG|A Chain A, Crystal Structure Of Transcriptional Regulator, Tetr
Family (Tm1030) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1ZKG|B Chain B, Crystal Structure Of Transcriptional Regulator, Tetr
Family (Tm1030) From Thermotoga Maritima At 2.30 A
Resolution
Length = 212
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 102 VMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATG---RSLSNNPE----AY 154
V++K ++ A + + G G D T DE+ GVA G N E AY
Sbjct: 13 VLSKRDAILKAAVEVFGKK-----GYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAY 67
Query: 155 ASFLEKMRNEVYMYFILPKNPDLSEF 180
S EK++ E + +N D+ +F
Sbjct: 68 XSVTEKLQKEFENFLXKNRNRDIFDF 93
>pdb|1QMB|B Chain B, Cleaved Alpha-1-Antitrypsin Polymer
Length = 42
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 273 ITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
I R P VK N PF+F + + T S +F G + P
Sbjct: 4 IPRSIPPEVKFNAPFVFLMIEQNTKSPLFMGKVVNP 39
>pdb|7API|B Chain B, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|B Chain B, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|B Chain B, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|1EZX|B Chain B, Crystal Structure Of A Serpin:protease Complex
pdb|3NDD|B Chain B, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
pdb|3NDF|B Chain B, Cleaved Antitrypsin With P8-P6 Asp
Length = 36
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 279 PTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
P VK N+PF+F + + T S +F G + P
Sbjct: 4 PEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 33
>pdb|2D26|B Chain B, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 36
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 279 PTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
P VK N+PF+F I + T + +F G + P
Sbjct: 4 PEVKFNKPFVFLIIEQNTKAPLFMGRVVNP 33
>pdb|1Z77|A Chain A, Crystal Structure Of Transcriptional Regulator Protein
From Thermotoga Maritima.
pdb|2IEK|A Chain A, New Crystal Form Of Transcriptional Regulator Tm1030 From
Thermotoga Maritima
Length = 200
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 103 MTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATG---RSLSNNPE----AYA 155
++K ++ A + + G G D T DE+ GVA G N E AY
Sbjct: 2 LSKRDAILKAAVEVFGKK-----GYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYX 56
Query: 156 SFLEKMRNEVYMYFILPKNPDLSEF 180
S EK++ E + +N D+ +F
Sbjct: 57 SVTEKLQKEFENFLXKNRNRDIFDF 81
>pdb|2ID6|A Chain A, Crystal Structure Of Transcriptional Regulator (Tm1030) At
1.75a Resolution
pdb|3IH2|A Chain A, Tm1030 Crystallized At 323k
pdb|3IH3|A Chain A, Tm1030 Crystallized At 310k
pdb|3IH4|A Chain A, Tm1030 Crystallized At 277k
pdb|4I6Z|A Chain A, Crystal Structure Of The Transcriptional Regulator Tm1030
With 24bp Dna Oligonucleotide
pdb|4I6Z|B Chain B, Crystal Structure Of The Transcriptional Regulator Tm1030
With 24bp Dna Oligonucleotide
pdb|4I76|A Chain A, Crystal Structure Of Transcriptional Regulator Tm1030 With
Octanol
pdb|4I76|B Chain B, Crystal Structure Of Transcriptional Regulator Tm1030 With
Octanol
Length = 202
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 103 MTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATG---RSLSNNPE----AYA 155
++K ++ A + + G G D T DE+ GVA G N E AY
Sbjct: 4 LSKRDAILKAAVEVFGKK-----GYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYX 58
Query: 156 SFLEKMRNEVYMYFILPKNPDLSEF 180
S EK++ E + +N D+ +F
Sbjct: 59 SVTEKLQKEFENFLXKNRNRDIFDF 83
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+P+ ++T +L VL V ++F S +DLS + + VD V H+ + V E+G
Sbjct: 258 LPRFELTQPHQLVEVLAEAGVRTLFTAS-ADLSG-ISTVPLYVDTVIHQARLRVDERGAE 315
Query: 265 AAASTGIIITRIS----KPTVK--INRPFIFFIYHKPTDSIVFWGSIYKPEPQRP 313
AA+T ++ + T++ ++RPF + + +I+F GSI P P
Sbjct: 316 GAAATAAMMLLAGAMPPRRTIRFSVDRPFHIVVRRR--GAILFLGSIADPHDPGP 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,285,805
Number of Sequences: 62578
Number of extensions: 368860
Number of successful extensions: 1408
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 391
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)