RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5102
(357 letters)
>gnl|CDD|215699 pfam00079, Serpin, Serpin (serine protease inhibitor). Structure
is a multi-domain fold containing a bundle of helices
and a beta sandwich.
Length = 369
Score = 145 bits (369), Expect = 2e-40
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 162 RNEVYMYFILP-KNPDLSEFTKDLDYDKFSRIIES--TNKVDVIYTIPKMKVTSSTELRT 218
+ + M ILP + L E K L + + S KV +PK K+ SS +L+
Sbjct: 218 KGNLSMLIILPDEGGGLEELEKSLTAELLEEWLSSLKPRKVREELYLPKFKIESSYDLKE 277
Query: 219 VLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISK 278
VL + +T F SK+D S + + V +V HK IEV E+GT AAA+TG++I +
Sbjct: 278 VLKKLGITDAFS-SKADFSGISSSEPLYVSKVVHKAFIEVNEEGTEAAAATGVVIVPRAP 336
Query: 279 ---PTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
P +RPF+F I T SI+F G + P
Sbjct: 337 PPPPEFVADRPFLFLIRDNSTGSILFMGRVVNP 369
Score = 50.3 bits (121), Expect = 6e-07
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 86 RGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGR 145
D+ + + S + ++N+ F+PLSI ALA++ LG+ G+T ++L +G
Sbjct: 1 EANNDFAFDLYKQL-SKESPDKNIFFSPLSISTALAMLYLGARGETAEQLLSVLGFPEL- 58
Query: 146 SLSNNPEAYASFLEKMRN 163
E + S L +
Sbjct: 59 DDEEIHEGFQSLLSSLNK 76
Score = 48.8 bits (117), Expect = 2e-06
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 14 RGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 69
D+ + + S + ++N+ F+PLSI ALA++ LG+ G+T ++L +G
Sbjct: 1 EANNDFAFDLYKQL-SKESPDKNIFFSPLSISTALAMLYLGARGETAEQLLSVLGF 55
Score = 32.2 bits (74), Expect = 0.40
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 321 NEAEELYQSEIFRLDFGNPASARF-VNNYILSATK 354
++ Y +E+ +DF +PA AR +N+++ T
Sbjct: 103 QLLKKYYGAEVESVDFSDPAEARKQINSWVEKKTN 137
>gnl|CDD|238101 cd00172, SERPIN, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 364
Score = 139 bits (353), Expect = 3e-38
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Query: 167 MYFILPKNPD-LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
M ILPK L+E + L +K ++ + + +V T+PK K+ SS +L+ VL + +
Sbjct: 223 MLIILPKEVTGLAELEEKLSAEKLDDLLSNLKEREVEVTLPKFKIESSLDLKEVLQALGI 282
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISK---PTVK 282
T +F +DLS++ D + V +V HK IEV E+GT AAA+T + I K
Sbjct: 283 TDLFS-PSADLSSISSDEPLYVSKVIHKAFIEVNEEGTEAAAATAVSIVPRRPSPPVEFK 341
Query: 283 INRPFIFFIYHKPTDSIVFWGSI 305
+RPF+F I T +I+F G +
Sbjct: 342 ADRPFLFLIRDDTTGTILFLGRV 364
Score = 50.7 bits (122), Expect = 5e-07
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 87 GITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRS 146
LD+ + + + ++NVVF+PLSI ALAL+ LG+ G+T+++L +G+ +
Sbjct: 1 ANNDFALDLYKQL-AKSEPDENVVFSPLSIASALALLYLGAGGETREQLRKVLGLPSLDD 59
Query: 147 LSNNPEAYASFLEK 160
+ +A+ S L
Sbjct: 60 -EDVHQAFKSLLSS 72
Score = 48.4 bits (116), Expect = 3e-06
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 15 GITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
LD+ + + + ++NVVF+PLSI ALAL+ LG+ G+T+++L +G
Sbjct: 1 ANNDFALDLYKQL-AKSEPDENVVFSPLSIASALALLYLGAGGETREQLRKVLG 53
Score = 29.9 bits (68), Expect = 2.1
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 320 NNEAEELYQSEIFRLDFGNPASARF-VNNYILSATK 354
+ A++ Y +E+ +DF NP +A +NN++ T
Sbjct: 101 LDLAKKYYDAEVESVDFANPEAAAAQINNWVEEKTN 136
>gnl|CDD|214513 smart00093, SERPIN, SERine Proteinase INhibitors.
Length = 359
Score = 139 bits (352), Expect = 5e-38
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 163 NEVYMYFILPKNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNT 222
M ILP L + K L + + ++S K V +PK K+ + +L+ VL
Sbjct: 214 GNASMLIILPDEGGLEKLEKALTPETLKKWMKSLTKRSVELYLPKFKIEGTYDLKDVLEK 273
Query: 223 MNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKP-TV 281
+ +T +F +K+DLS + +D+ + V +V HK +EV E+GT AAA+TG+I S P
Sbjct: 274 LGITDLFS-NKADLSGISEDKDLKVSKVLHKAVLEVNEEGTEAAAATGVIAVPRSLPPEF 332
Query: 282 KINRPFIFFIYHKPTDSIVFWGSIYKP 308
K NRPF+F I T SI+F G + P
Sbjct: 333 KANRPFLFLIRDNKTGSILFMGKVVNP 359
Score = 44.5 bits (106), Expect = 5e-05
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 29 SVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 69
+ + ++N+ F+P+SI ALA++ LG+ G T ++ +G
Sbjct: 8 AKESPDKNIFFSPVSISSALAMLSLGAKGSTATQILEVLGF 48
Score = 44.5 bits (106), Expect = 5e-05
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 101 SVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 141
+ + ++N+ F+P+SI ALA++ LG+ G T ++ +G
Sbjct: 8 AKESPDKNIFFSPVSISSALAMLSLGAKGSTATQILEVLGF 48
>gnl|CDD|239014 cd02059, ovalbumin_like, The ovalbumin_like group of serpins
contains ovalbumin, the squamous cell carcinoma antigen
1 (SCCA1) and other closely related serpins of clade B
of the serpin superfamily. Ovalbumin, the major protein
component of avian egg white, is a non-inhibitory member
of SERine Proteinase INhibitorS (serpins). In contrast,
SCCA1 inhibits cysteine proteinases such as cathepsin S,
K, L, and papain, a so called cross-class serpin.
Length = 389
Score = 109 bits (274), Expect = 7e-27
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 10/150 (6%)
Query: 167 MYFILPKNPD-LSEFTKDLDYDKFSRIIESTN----KVDVIYTIPKMKVTSSTELRTVLN 221
M +LP L + L Y+K S N KV+V +P+ K+ L++VL
Sbjct: 242 MIVLLPDEISGLEQLESKLTYEKLMEWTSSENMRERKVEV--YLPRFKLEEKYNLKSVLK 299
Query: 222 TMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPT- 280
M +T +F SK+DLS + + + + + HK +EV E+GT AAA+TG I S P
Sbjct: 300 AMGMTDIFSESKADLSGISSSKSLYLSKAIHKSYVEVNEEGTEAAAATGAGIVEKSLPVS 359
Query: 281 --VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ + PF+FFI H T++I+F+G P
Sbjct: 360 EEFRADHPFLFFIRHNKTNTILFFGRFSSP 389
Score = 41.6 bits (98), Expect = 4e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 12 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTK---DELTHF 66
L T+ D+ + ++ KN+N+ F+PLSI AL +VLLG+ T +++ HF
Sbjct: 1 LSAANTEFCFDLFKELKK-NHKNKNIFFSPLSISSALGMVLLGARDDTAAQIEKVLHF 57
Score = 41.6 bits (98), Expect = 4e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 84 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTK---DELTHF 138
L T+ D+ + ++ KN+N+ F+PLSI AL +VLLG+ T +++ HF
Sbjct: 1 LSAANTEFCFDLFKELKK-NHKNKNIFFSPLSISSALGMVLLGARDDTAAQIEKVLHF 57
>gnl|CDD|227163 COG4826, COG4826, Serine protease inhibitor [Posttranslational
modification, protein turnover, chaperones].
Length = 410
Score = 104 bits (262), Expect = 3e-25
Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 133 DELTHFMGVATGR-SLSNNPEAYASFLEKMRNEVYMYFILPKNPDLSEFTKDLDYDKFSR 191
++ + M G + +A L +++ MY +LPK+ +++EF + +K++
Sbjct: 227 EDKSVDMMSICGDFNYGETSKAKIVELPYKGDDLSMYIVLPKDNNITEFENNFTLEKYTE 286
Query: 192 IIESTNKVDVIYT-IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQV 250
+ + D + IPK K + TEL+ L M V F+ + ++ S + D R + + V
Sbjct: 287 LKSNMEDQDEVEVEIPKFKFETKTELKDALIEMGVVDAFE-NTANFSGISDRR-LEISDV 344
Query: 251 FHKVDIEVTEQGTVAAASTGIII----TRISKPTVKINRPFIFFIYHKPTDSIVFWGSIY 306
FH+ I+V E+GT AAA+T ++ + ++ PF+F I + + I+F G +
Sbjct: 345 FHQAFIDVDEEGTEAAAATAVVFKAVCAKGGWVEFVVDHPFLFVIEDRRSGCILFIGKVV 404
Query: 307 KPEPQ 311
PE +
Sbjct: 405 NPEYE 409
Score = 31.4 bits (71), Expect = 0.77
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 20 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
D+ + + +N++F+P S+ A+A+ G++G TK+++
Sbjct: 46 AFDLYSELAKQEGEAENILFSPYSVSAAMAMCYEGAEGSTKEQM 89
Score = 31.4 bits (71), Expect = 0.77
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 92 TLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
D+ + + +N++F+P S+ A+A+ G++G TK+++
Sbjct: 46 AFDLYSELAKQEGEAENILFSPYSVSAAMAMCYEGAEGSTKEQM 89
>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
a serine protease inhibitor that belongs to the
ov-serpin branch of the serpin superfamily. It is is an
effective inhibitor of urinary plasminogen activator
(urokinase or uPA) and is involved in cell
differentiation, tissue growth and regeneration.
Length = 380
Score = 101 bits (254), Expect = 3e-24
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 163 NEVYMYFILP-----KNPDLSEFTKDLDYDKFSRIIESTN-----KVDVIYTIPKMKVTS 212
E+ M+ +LP L + K+L Y+K + E T+ + +V +PK K+
Sbjct: 225 KELSMFILLPDEIEDVTTGLEKLEKELTYEKLN---EWTSPEMMEEYEVEVYLPKFKLEE 281
Query: 213 STELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGII 272
S +L++ L++M + FD K+D S M + + +VFHK +EV E+GT AAA+T I
Sbjct: 282 SYDLKSTLSSMGMEDAFDPGKADFSGMSSANDLFLSKVFHKAFVEVNEEGTEAAAATAAI 341
Query: 273 IT-RISKPTVKIN--RPFIFFIYHKPTDSIVFWGSIYKP 308
+ R P+ + N PF+FFI H T++I+F+G P
Sbjct: 342 MMLRCLMPSPRFNADHPFLFFIRHNKTNTILFFGRFCSP 380
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 12 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
L T L++ + + + + +N+ F+P SI ALA+V LG+ G T ++
Sbjct: 1 LSAANTSFALNLFKKL-AESSPTKNIFFSPWSISSALAMVYLGAKGNTAAQM 51
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 84 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
L T L++ + + + + +N+ F+P SI ALA+V LG+ G T ++
Sbjct: 1 LSAANTSFALNLFKKL-AESSPTKNIFFSPWSISSALAMVYLGAKGNTAAQM 51
>gnl|CDD|238999 cd02044, ov-serpin, ovalbumin family of serpins (ov-serpins).
Family of closely related proteins, whose members can be
secreted (ovalbumin), cytosolic (leukocyte elastase
inhibitor, LEI), or targeted to both compartments
(plasminogen activator inhibitor 2, PAI-2). This
subgroup corresponds to clade B of the serpin
superfamily. In general, serpins exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones. Serpins are of medical interest because
mutants can cause blood clotting disorders, emphysema,
cirrhosis, and dementia.
Length = 370
Score = 101 bits (252), Expect = 5e-24
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 167 MYFILPKN-PDLSEFTKDLDYDKFSRIIEST----NKVDVIYTIPKMKVTSSTELRTVLN 221
M+ +LP L + +++Y+K ++ + KV V +P+ K+ +L++VL
Sbjct: 225 MFILLPDEVTGLEKLESEINYEKLNKWTSPSTMAEAKVKV--YLPRFKMEKMYDLKSVLE 282
Query: 222 TMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIIT-RISKPT 280
++ + F +++ S M + +G+A+ V HK +E+ E GT AA TG ++ R K
Sbjct: 283 SLGMKDAFSEGRANFSGMSETKGLALSNVIHKASLEINEDGTEAAEVTGAVMLQRSVKEE 342
Query: 281 VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ PF+F I H T+ I+F+G P
Sbjct: 343 FNADHPFLFIIRHNKTNCILFFGKFSSP 370
Score = 37.5 bits (87), Expect = 0.008
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 29 SVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
S + QNV F+P++I+ +LA+V LG+ G T +++
Sbjct: 17 SKKSALQNVFFSPIAIMSSLAMVYLGAKGSTANQI 51
Score = 37.5 bits (87), Expect = 0.008
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 101 SVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
S + QNV F+P++I+ +LA+V LG+ G T +++
Sbjct: 17 SKKSALQNVFFSPIAIMSSLAMVYLGAKGSTANQI 51
>gnl|CDD|239006 cd02051, PAI-1_nexin-1, Plasminogen activator inhibitor-1_like.
Plasminogen activator inhibitor-1 (PAI-1) is the
primary, fast-acting inhibitor of plasminogen
activators. It is often bound to vitronectin, an
abundant component of the extracellular matrix in many
tissues. Protease nexin-1 is a potent serpin able to
inhibit thrombin, plasmin, and plasminogen activators.
PAI-1 and nexin-1 are members of the serpin superfamily
and represent clade E. In general, SERine Proteinase
INhibitors (serpins) exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin
and antichymotrypsin, function as serine protease
inhibitors which regulate blood coagulation cascades.
Non-inhibitory serpins perform many diverse functions
such as chaperoning proteins or transporting hormones.
Length = 377
Score = 98.0 bits (244), Expect = 7e-23
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 163 NEVYMYFILP--KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVL 220
+ M LP K+ LS + + + + +PK V + T+L+ L
Sbjct: 229 ESISMLIALPTEKSTPLSAIIPHISTKTIQSWMGTMVPKRMQLVLPKFTVEAETDLKEPL 288
Query: 221 NTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTG-IIITRISKP 279
+ +T MFD SK++ + + + V K IEV E GT A+A+T I+I R S P
Sbjct: 289 KALGITDMFDQSKANFTKISRSESLHVSHALQKAKIEVNEDGTKASAATTAILIARSSPP 348
Query: 280 TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
++RPF+FFI H PT +I+F G I KP
Sbjct: 349 WFIVDRPFLFFIRHNPTGTILFMGQINKP 377
Score = 36.4 bits (84), Expect = 0.019
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
+NVV +P I L ++ LG+DG+TK +L M
Sbjct: 27 PQENVVVSPHGIASVLGMLQLGADGKTKKQLQTVMR 62
Score = 36.4 bits (84), Expect = 0.019
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+NVV +P I L ++ LG+DG+TK +L M
Sbjct: 27 PQENVVVSPHGIASVLGMLQLGADGKTKKQLQTVMR 62
>gnl|CDD|239004 cd02049, bacterial_SERPIN, SERine Proteinase INhibitors (serpins),
prokaryotic subgroup. Little information about specific
functions is available for this subgroup, most likely
they are inhibitory members of the serpin superfamily.
In general, serpins exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin and
antichymotrypsin, function as serine protease
inhibitors.
Length = 364
Score = 96.7 bits (241), Expect = 1e-22
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 150 NPEAYASFLEKMRNEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKM 208
P A L + MY LPK N L EF K L +K+ + IE + ++P+
Sbjct: 204 TPGFQAVRLPYGDGRLSMYVFLPKENVSLREFVKTLTAEKWRKWIEQFRMREGSLSLPRF 263
Query: 209 KVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAAS 268
++ ELR L + + F +D S + + + + +V HK IEV E+GT AAA+
Sbjct: 264 QLEYEIELRDALKALGMEEAFTPDAADFSKL-GEGNLYISKVIHKTFIEVNEEGTEAAAA 322
Query: 269 TGIIITRISKP-----TVKINRPFIFFIYHKPTDSIVFWGSI 305
T + IT S P T+ +RPF+F I T SI+F G++
Sbjct: 323 TSVEITETSAPAGEPFTMVADRPFLFAIRDNRTGSILFMGAV 364
Score = 32.3 bits (74), Expect = 0.34
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
+N+ +PLSI AL++ G+DG T+ E+ +G
Sbjct: 21 VEKNIFISPLSIALALSMTYNGADGTTRKEMLKALG 56
Score = 32.3 bits (74), Expect = 0.34
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 140
+N+ +PLSI AL++ G+DG T+ E+ +G
Sbjct: 21 VEKNIFISPLSIALALSMTYNGADGTTRKEMLKALG 56
Score = 31.6 bits (72), Expect = 0.62
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 293 HKPTDSIVFWGSIYKPEPQRPYHENERNNEAEELYQSEIFRLDFGNPASARFVNNYILSA 352
H T ++ SI+ EP + ++ YQ+ + LDF +PA+A +N ++
Sbjct: 79 HDKTVELIIANSIWI-EPGFTLKPDFLQT-IKDYYQAYVLELDFQSPAAAEEINRWVKEK 136
Query: 353 TK 354
TK
Sbjct: 137 TK 138
>gnl|CDD|239011 cd02056, alpha-1-antitrypsin_like, alpha-1-antitrypsin_like. This
family contains a variety of different members of clade
A of the serpin superfamily. They include the classical
serine proteinase inhibitors, alpha-1-antitrypsin and
alpha-1-antichymotrypsin, protein C inhibitor,
kallistatin, and noninhibitory serpins, like
corticosteroid and thyroxin binding globulins. In
general, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 361
Score = 91.2 bits (227), Expect = 2e-20
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 167 MYFILPKNPDLSEFTKDLDYDKFSRIIES--TNKVDVIYTIPKMKVTSSTELRTVLNTMN 224
+F+LP + + L D + + VD+ +PK ++ + L+ +L M
Sbjct: 222 AFFVLPDEGKMKQVEAALSRDTLKKWSKLLSKRSVDLY--LPKFSISGTYNLKDILPKMG 279
Query: 225 VTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISK--PTVK 282
+T +F K+DLS + + + V + HK ++V E+GT AAA+TG+ IT +S P +K
Sbjct: 280 ITDVFS-DKADLSGITEQPNLKVSKAVHKAVLDVDEKGTEAAAATGVEITPMSALPPILK 338
Query: 283 INRPFIFFIYHKPTDSIVFWGSI 305
NRPF+ I+ + T+SI+F G +
Sbjct: 339 FNRPFLLLIFDRTTESILFLGKV 361
Score = 33.4 bits (77), Expect = 0.14
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 29 SVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 63
+ + ++N+ F+P+SI ALA++ LG+ T ++
Sbjct: 14 ASESPSKNIFFSPVSISTALAMLSLGARSSTLAQI 48
Score = 33.4 bits (77), Expect = 0.14
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 101 SVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
+ + ++N+ F+P+SI ALA++ LG+ T ++
Sbjct: 14 ASESPSKNIFFSPVSISTALAMLSLGARSSTLAQI 48
Score = 31.1 bits (71), Expect = 0.96
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 321 NEAEELYQSEIFRLDFGNPASA-RFVNNYILSATK 354
+ + LY+SE F DF + A A + +N+Y+ T
Sbjct: 104 EDVKHLYESEAFSTDFQDSAEAKKQINDYVEKKTH 138
>gnl|CDD|239003 cd02048, neuroserpin, Neuroserpin is a inhibitory member of the
SERine Proteinase INhibitor (serpin) family that reacts
preferentially with tissue-type plasminogen activator
(tPA). It is located in neurons in regions of the brain
where tPA is also found, suggesting that neuroserpin is
the selective inhibitor of tPA in the central nervous
system (CNS). This subgroup corresponds to clade I of
the serpin superfamily.
Length = 388
Score = 83.7 bits (207), Expect = 7e-18
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 163 NEVYMYFILPKNP-DLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+E+ + IL + L+ + S K V +P+ KV +L+ VL
Sbjct: 227 DEISLMIILSRQEVPLATLEPLVKAPLIEEWANSVKKQKVEVYLPRFKVEQKIDLKDVLK 286
Query: 222 TMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRI---SK 278
+ +T +F +DLS + D + + V +VFHKV +EV E+G+ AAAS+G+I
Sbjct: 287 NLGITEIFSGG-ADLSGISDSKELYVSKVFHKVFLEVNEEGSEAAASSGMIAISRMAVLY 345
Query: 279 PTVKINRPFIFFIYHKPTDSIVFWGSIYKPEPQ 311
P V ++ PF F I ++ T SI+F G + PE
Sbjct: 346 PQVIVDHPFFFLIRNRRTGSILFMGRVMHPETM 378
Score = 44.1 bits (104), Expect = 7e-05
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 88 ITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSL 147
I ++++D+ A+R+ N++F+PLS AL +V LG+ G E+ H +G L
Sbjct: 4 IAELSVDLYNALRASKEDE-NIIFSPLSTALALGMVELGAKGSALKEIRHSLGY---DGL 59
Query: 148 SNNPE 152
N E
Sbjct: 60 KNGEE 64
Score = 43.3 bits (102), Expect = 1e-04
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 16 ITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
I ++++D+ A+R+ N++F+PLS AL +V LG+ G E+ H +G
Sbjct: 4 IAELSVDLYNALRASKEDE-NIIFSPLSTALALGMVELGAKGSALKEIRHSLG 55
>gnl|CDD|239012 cd02057, maspin_like, Maspin (mammary serine proteinase inhibitor),
a member of the serpin superfamily, with a multitude of
effects on cells and tissues at an assortment of
developmental stages. Maspin has tumor suppressing
activity against breast and prostate cancer. In general,
SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 372
Score = 81.1 bits (200), Expect = 5e-17
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 167 MYFILPKNPD-----LSEFTKDLDYDKFSRIIE----STNKVDVIYTIPKMKVTSSTELR 217
M +LPK+ + L + K L + S+ + KV V ++PK KV +L+
Sbjct: 225 MLILLPKDIEDESTGLEKLEKQLTSESLSQWTNPSMMANAKVKV--SLPKFKVEKMIDLK 282
Query: 218 TVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
+L ++ + +F+ SD S M + +GVA+ V HKV +EV E G + G I +
Sbjct: 283 AMLESLGLKHIFNEDASDFSGMSETKGVALSNVIHKVCLEVNEDGGESIEVPGARILQ-H 341
Query: 278 KPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
K + PFIF I H T +I+F+G P
Sbjct: 342 KDEFNADHPFIFIIRHNKTRNIIFFGRFCSP 372
Score = 31.8 bits (72), Expect = 0.57
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDELT---HFMGV 69
NVVF+P+ + +LAL +G+ G T +E+ HF V
Sbjct: 24 NVVFSPICLSTSLALAQVGAKGDTANEIGKVLHFENV 60
Score = 31.8 bits (72), Expect = 0.57
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELT---HFMGV 141
NVVF+P+ + +LAL +G+ G T +E+ HF V
Sbjct: 24 NVVFSPICLSTSLALAQVGAKGDTANEIGKVLHFENV 60
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 74.1 bits (182), Expect = 1e-14
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 163 NEVYMYFILPK-NPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLN 221
+++ M ILPK LSE ++L DK +++ + + IP+ +V S ++ L
Sbjct: 232 DDITMVLILPKEGTTLSEVEQNLTLDKLQGWLDAMKETTLAVQIPRFRVEDSFSVKEQLQ 291
Query: 222 TMNVTSMFDVSKSDLSNMLDDRG--VAVDQVFHKVDIEVTEQGTVAAASTGIIIT----R 275
M + +F + L ++ + V FHK +EV E+G+ A+A+T ++IT
Sbjct: 292 KMGLEDLFSPENAKLPGIVAGGRTDLYVSDAFHKAFLEVNEEGSEASAATAVVITGRSLN 351
Query: 276 ISKPTVKINRPFIFFIYHKPTDSIVFWGSI 305
I++ NRPF+ FI ++I+F G +
Sbjct: 352 INRIIFVANRPFLLFIREVAINAIIFMGRV 381
>gnl|CDD|239010 cd02055, PZI, Protein Z-dependent protease inhibitor (ZPI) is a
member of the serpin superfamily of proteinase
inhibitors (clade A10). ZPI inhibits coagulation factor
Xa , dependent on protein Z (PZ), a vitamin K-dependent
plasma protein. ZPI also inhibits factor XIa in a
process that does not require PZ. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms.
Length = 365
Score = 63.8 bits (155), Expect = 2e-11
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 196 TNKVDVIYTIPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNML-DDRGVAVDQVFHKV 254
+ +D+ + PK K+ E+ +L + + ++F +DLS +L D + + V QV K
Sbjct: 257 SRNMDIFF--PKFKLDQKYEMHELLRALGIKNIF-APFADLSELLADGKHLQVSQVLQKA 313
Query: 255 DIEVTEQGTVAAASTGIIITRISKPTV-KINRPFIFFIYHKPTDSIVFWGSI 305
IEV E+GT AAA+ G I S P V K++RPF F I+ + ++F G +
Sbjct: 314 VIEVDEKGTEAAAAIGSEIIAFSMPPVIKVDRPFHFMIFEETFGMLLFIGRV 365
Score = 29.5 bits (66), Expect = 2.6
Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 31 MTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNKLTAHSLRRGITQ 90
M + N++F+P + A+A +LL ++G+T+ R ++ L H+L+
Sbjct: 19 MKHDGNIIFSPFGMSLAMAGLLLAAEGETE------------RQIAKALHLHALKDRDPG 66
Query: 91 MTLDMERAIRSVMTKNQNVVF 111
+ + + ++ +++N+ + F
Sbjct: 67 LLPALFKGLKDNISRNEELGF 87
Score = 28.7 bits (64), Expect = 4.7
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 103 MTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL 135
M + N++F+P + A+A +LL ++G+T+ ++
Sbjct: 19 MKHDGNIIFSPFGMSLAMAGLLLAAEGETERQI 51
>gnl|CDD|238998 cd02043, plant_SERPIN, SERine Proteinase INhibitors (serpins),
plant specific subgroup. It has been suggested that
plant serpins play a role in defense against insect
predators. This subgroup corresponds to clade P of the
serpin superfamily. In general, serpins exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 381
Score = 63.2 bits (154), Expect = 4e-11
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDD-RGVAVDQVFHKVDIEVTEQGT 263
IPK K + E VL + +T FD + LS + + V V+HK +EV E+GT
Sbjct: 272 IPKFKFSFGFEASEVLKKLGLTLPFDPGGALLSMSSPEGENLYVSSVYHKACVEVDEEGT 331
Query: 264 VAAASTGIIITRISKPTVKI-----NRPFIFFIYHKPTDSIVFWGSIYKP 308
AAA+T ++++ S P + + PF+F I T ++F G + P
Sbjct: 332 EAAAATAVVMSGTSSPPPRPVDFVADHPFLFLIREDKTGVVLFLGQVMNP 381
Score = 41.6 bits (98), Expect = 4e-04
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPE 152
K NV+F+PLSI AL+LV G+ G+T D+L F+G + L
Sbjct: 20 KGSNVIFSPLSINVALSLVAAGARGETLDQLLSFLGSPSTDELHAVAA 67
Score = 41.3 bits (97), Expect = 5e-04
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMG 68
K NV+F+PLSI AL+LV G+ G+T D+L F+G
Sbjct: 20 KGSNVIFSPLSINVALSLVAAGARGETLDQLLSFLG 55
>gnl|CDD|239008 cd02053, alpha2AP, Alpha2-antiplasmin (alpha2AP) is the primary
inhibitor of plasmin, a proteinase that digests fibrin,
the main component of blood clots. Alpha2-Antiplasmin
forms an inactive 1 : 1 stoichiometric complex with
plasmin. It also rapidly crosslinks to fibrin during
blood clotting by activated coagulation factor XIII, and
as a consequence fibrin becomes more resistant to
fibrinolysis. Therefore alpha2AP is important in
modulating the effectiveness and persistence of fibrin
with respect to its susceptibility to digestion and
removal by plasmin. This subgroup corresponds to clade
F2 of the serpin superfamily.
Length = 351
Score = 59.4 bits (144), Expect = 6e-10
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+PK+K+ EL L+ + + +F DLS + D+ + V V H+ +E++E+G
Sbjct: 255 LPKLKLDYQLELNEALSQLGLQELF--QAPDLSGISDEP-LFVSSVQHQSTLELSEKGVE 311
Query: 265 AAASTGIIITRISKPTVKINRPFIFFIYHKPTDSIVFWGSI 305
A+A+T + +R S + +NRPF+FFI+ +F GS+
Sbjct: 312 ASAATSVATSR-SLSSFSVNRPFLFFIFEDTMGLPLFMGSV 351
Score = 37.5 bits (87), Expect = 0.007
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 16/160 (10%)
Query: 12 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVAT 71
L R + + D+ + TK N++ +PLSI AL+ + LG+ +T+ L + +
Sbjct: 1 LARAMMGFSTDLLSEVAQESTKP-NLILSPLSIALALSHLALGAQNETEQRLLKTLHAES 59
Query: 72 GRSLSNKLTAHSLRRGITQMTLDMERAIRSVMTK----NQNVVFAPLSIVGALALVLLGS 127
L + L+ LR+ + L A R + K ++ + + GA + L G+
Sbjct: 60 LPCLHHLLS--RLRQDLGPGAL--RLATRMYLQKGFEIKESFLEESEKLYGAKPVSLTGT 115
Query: 128 DGQTKDELTHFMGVATGRSLSNNPEAYASFLEKMRNEVYM 167
+ ++ AT + N FL + ++ +
Sbjct: 116 KEDDLANINKWVKEATEGQIPN-------FLSDLPHDTVL 148
>gnl|CDD|239007 cd02052, PEDF, Pigment epithelium-derived factor (PEDF)_like. PEDF
is non-inhibitory member of the Serpin superfamily. It
exhibits neurotrophic, neuroprotective and
antiangiogenic properties and is widely expressed in the
developing and adult nervous systems. This subgroup
corresponds to clade F1 of the serpin superfamily.
Length = 374
Score = 59.1 bits (143), Expect = 9e-10
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 161 MRNEVYMYFILP----KNPDL------SEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKV 210
+ V + F LP +N L SEF D+D V + T+PK+K+
Sbjct: 228 LTGGVSIMFFLPDKVTQNLTLIEESLTSEFVHDID--------RELKTVKAVLTLPKLKL 279
Query: 211 TSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTG 270
+ TEL L + + S+F D + + + + + V HK +E+ E G A + G
Sbjct: 280 SYETELLPSLQELKLQSLFA--SPDFTK-ITSKPIKLSHVHHKAVLELNEDGAETAPTPG 336
Query: 271 IIITRISKP-TVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
T ++ P ++RPF+F + + T +++F G + P
Sbjct: 337 -SATALTFPLEYHVDRPFLFVLRDEDTGALLFIGKVLDP 374
Score = 29.0 bits (65), Expect = 3.5
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 77 NKLTAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELT 136
NKL A ++ D+ R ++ NV +PLSI AL+ + LG+ +T+ ++
Sbjct: 13 NKLAA-----AVSNFGYDLYR-QQASRDPTANVFLSPLSIATALSQLSLGAGERTESQIH 66
Query: 137 HFMGVATGRSLSNNPEAYASFLE 159
A L N+PE + ++ +
Sbjct: 67 R----ALYYDLLNDPELHDTYKD 85
Score = 28.7 bits (64), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 28 RSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKD 61
++ NV +PLSI AL+ + LG+ +T+
Sbjct: 30 QASRDPTANVFLSPLSIATALSQLSLGAGERTES 63
>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
Provisional.
Length = 373
Score = 57.7 bits (139), Expect = 2e-09
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+P+ + + +++++ M SMF+ + +M D + + ++F I+V EQGTV
Sbjct: 271 LPRFSIENKRDIKSIAEMM-APSMFNPDNASFKHMTRDP-LYIYKMFQNAKIDVDEQGTV 328
Query: 265 AAASTGIIITRISKPT-VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
A AST ++ T S P ++ N PF+F I H T I+F G + P
Sbjct: 329 AEASTIMVATARSSPEELEFNTPFVFIIRHDITGFILFMGKVESP 373
>gnl|CDD|239002 cd02047, HCII, Heparin cofactor II (HCII) inhibits thrombin, the
final protease of the coagulation cascade. HCII is
allosterically activated by binding to cell surface
glycosaminoglycans (GAGs). The specificity of HCII for
thrombin is conferred by a highly acidic hirudin-like
N-terminal tail, which becomes available after GAG
binding for interaction with the anion-binding exosite I
of thrombin. This subgroup corresponds to clade D of the
serpin superfamily.
Length = 436
Score = 57.5 bits (139), Expect = 3e-09
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 205 IPKMKVTSSTELRTVLNTMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTV 264
+PK K+ + L L M +T +F K +++ + D++ +A+D H+ I V E+GT
Sbjct: 333 LPKFKLEKNYNLIESLKLMGITDLFT-EKGNMAGVSDEK-IAIDLFKHQGTITVNEEGTE 390
Query: 265 AAASTGIIITRISKPT-VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
AAA T + +S ++RPF+F IY T+ ++F G + P
Sbjct: 391 AAAVTTVGFMPLSTQVRFIVDRPFLFLIYEHRTNCLLFMGRVANP 435
Score = 38.3 bits (89), Expect = 0.005
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 25 RAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNK---LTA 81
R ++ + + N++ AP+ I A+ ++ LG GQT++++ +G + S+K T
Sbjct: 78 RVLKDQVNTSDNILLAPVGISTAMGMISLGLKGQTQEQVLSTLGFKDFVNASSKYEITTV 137
Query: 82 HSLRRGIT 89
H+L R +T
Sbjct: 138 HNLFRKLT 145
Score = 32.1 bits (73), Expect = 0.44
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 97 RAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVA 142
R ++ + + N++ AP+ I A+ ++ LG GQT++++ +G
Sbjct: 78 RVLKDQVNTSDNILLAPVGISTAMGMISLGLKGQTQEQVLSTLGFK 123
>gnl|CDD|239009 cd02054, angiotensinogen, Angiotensinogen is part of the
renin-angiotensin system (RAS), which plays an important
role in blood pressure regulation, renal haemodynamics,
fluid and electrolyte homeostasis. It is also involved
in normal and abnormal growth processes. The growth
promoting actions of angiotensin have been shown in a
variety of cells and tissues. This subgroup represents
clade A8 of the serpin superfamily. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones.
Length = 372
Score = 57.5 bits (139), Expect = 3e-09
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 165 VYMYFILPKN-PDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTM 223
+ + P DL + L S +++ + + T+PK + S +L+ +L M
Sbjct: 231 ACLLLVQPHEGSDLDKVEGKLPQQNSSNWLKNLSPRTIELTLPKFSLQGSYDLQDLLAQM 290
Query: 224 NVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPT--- 280
+ ++ S+++LS + +DR V +V +KV E++E GT ST +++KP
Sbjct: 291 ELPALLG-SEANLSKLSNDR-FTVGKVLNKVFFELSEDGTEVQEST----QQLNKPEVLE 344
Query: 281 VKINRPFIFFIYHKPTDSIVFWGSIYKP 308
V +NRPF+F +Y +++I+F G + P
Sbjct: 345 VTLNRPFLFAVYEANSNAILFLGRVTNP 372
Score = 31.0 bits (70), Expect = 0.85
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 33 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 69
+ N + +P S+ G LA + LG+ +T D L +G+
Sbjct: 22 VHTNTLLSPTSVFGTLASLYLGASKKTADSLQALLGL 58
Score = 31.0 bits (70), Expect = 0.85
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 105 KNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 141
+ N + +P S+ G LA + LG+ +T D L +G+
Sbjct: 22 VHTNTLLSPTSVFGTLASLYLGASKKTADSLQALLGL 58
>gnl|CDD|239005 cd02050, C1_inh, C1 inhibitor (C1-Inh) is a protease inhibitor of
the serpin family. It plays a pivotal role in regulating
the activation of the classical complement pathway and
of the contact system, via regulating bradykinin
formation, inhibiting factor XII and kallikrein of the
contact system, and via acting on factor XI in the
coagulation cascade. This subgroup corresponds to clade
G of the serpin superfamily.
Length = 352
Score = 51.7 bits (124), Expect = 2e-07
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 167 MYFILPKNP--DLSEFTKDLDYDKFSRIIESTNKVD---VIYTIPKMKVTSSTELRTVLN 221
+ ++P+ P DL + L F ++E T+P++K+ + ++ +++
Sbjct: 212 LVVLVPRGPKEDLEAVERALTPPAFLAMLEKMAANTPQRTEVTLPRIKLDLAVDMVALMH 271
Query: 222 TMNVTSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPTV 281
+ + +F ++L + D +AVD H+ + +TE+G AAA+T R + +
Sbjct: 272 KLGLFGLFL--DANLCGLYQDPELAVDAAQHRAVLTLTEKGVEAAAATATSFARTAL-SF 328
Query: 282 KINRPFIFFIYHKPTDSIVFWGSI 305
+ +PF+F ++ +F G +
Sbjct: 329 EALQPFLFVLWDDQAKVPLFMGRV 352
Score = 31.3 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 36 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 69
N++F+P+SI L+ +LLG+ G+T+ L +
Sbjct: 22 NLLFSPVSIALLLSHLLLGARGKTQRRLESILSY 55
Score = 31.3 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 108 NVVFAPLSIVGALALVLLGSDGQTKDELTHFMGV 141
N++F+P+SI L+ +LLG+ G+T+ L +
Sbjct: 22 NLLFSPVSIALLLSHLLLGARGKTQRRLESILSY 55
>gnl|CDD|239001 cd02046, hsp47, Heat shock protein 47 (Hsp47), also called
colligin, because of its collagen binding ability, is a
chaperone specific for procollagen. It has been shown to
be essential for collagen biosynthesis, but its exact
function is still unclear. Hsp47 is a non-inhibitory
member of the SERPIN superfamily and corresponds to
clade H.
Length = 366
Score = 46.9 bits (111), Expect = 7e-06
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 167 MYFILPKNPD-LSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNTMNV 225
M FI+P + + L K L ++ I K V ++PK+ + S +L+ L + +
Sbjct: 227 MIFIMPYHVEPLERLEKLLTREQLKTWISKMKKRAVAISLPKVSLEVSHDLQKHLGDLGL 286
Query: 226 TSMFDVSKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPTVKI-- 283
T D SK+DLS + + + + VFH +E +G I R K+
Sbjct: 287 TEAIDKSKADLSKISGKKDLYLSNVFHAAALEWDTEGNPFDPD---IYGREEMRNPKLFY 343
Query: 284 -NRPFIFFIYHKPTDSIVFWGSI 305
+ PFIF + T+SI+F G +
Sbjct: 344 ADHPFIFLVKDNKTNSILFIGRL 366
>gnl|CDD|165039 PHA02660, PHA02660, serpin-like protein; Provisional.
Length = 364
Score = 40.4 bits (94), Expect = 0.001
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 6 MRSNLILRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTH 65
M+ IL I +M+LD+ I + + N+VF+P S+ L ++ LGS+ +TK+EL+
Sbjct: 1 MKKYCILNNNIIKMSLDLGFCILKSLHRF-NIVFSPESLKAFLHVLYLGSERETKNELSK 59
Query: 66 FMGVATGRSLSNKLTAHSLRRGITQMTLDMERAIRSVMTKNQN 108
++G A N + IT++ +D I S + N
Sbjct: 60 YIGHAYSPIRKNHI------HNITKVYVDSHLPIHSAFVASMN 96
Score = 36.2 bits (83), Expect = 0.023
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 166 YMYFILP---KNPDLSEFTKDLDYDKFSRIIESTNKVDVIYTIPKMKVTSSTELRTVLNT 222
+M+ + P N L++ + D ++ K + +IPK ++ S +L +
Sbjct: 207 HMWIVFPDAISNDQLNQLENMMHGDTLKAFKHASRKKYLEISIPKFRIEHSFNAEHLLPS 266
Query: 223 MNVTSMFDVSKSDLSNML------DDRGVAVDQVFHKVDIEVTEQGTVAAASTGII---- 272
+ ++F + +LS M+ DD ++ K+ +E+ E+GT +
Sbjct: 267 AGIKTLF--TNPNLSRMITQGDKEDDLYPLPPSLYQKIILEIDEEGTNTKNIAKKMRRNP 324
Query: 273 --------ITRISKPTVKINRPFIFFIYHKPTDSIVFWGSIYKP 308
+ RI ++ +NRPFIF I ++ + I+F G I P
Sbjct: 325 QDEDTQQHLFRIE--SIYVNRPFIFIIEYE--NEILFIGRISIP 364
Score = 35.4 bits (81), Expect = 0.035
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 84 LRRGITQMTLDMERAIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDELTHFMGVA 142
L I +M+LD+ I + + N+VF+P S+ L ++ LGS+ +TK+EL+ ++G A
Sbjct: 7 LNNNIIKMSLDLGFCILKSLHRF-NIVFSPESLKAFLHVLYLGSERETKNELSKYIGHA 64
>gnl|CDD|236990 PRK11814, PRK11814, cysteine desulfurase activator complex subunit
SufB; Provisional.
Length = 486
Score = 31.0 bits (71), Expect = 0.97
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 239 MLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRIS 277
L R VAVD VF V + T + +A A G+I IS
Sbjct: 124 RLAGREVAVDAVFDSVSVATTFKEKLAEA--GVIFCSIS 160
>gnl|CDD|163705 cd00328, catalase, Catalase heme-binding enzyme. Catalase is a
ubiquitous enzyme found in both prokaryotes and
eukaryotes, which is involved in the protection of cells
from the toxic effects of peroxides. It catalyzes the
conversion of hydrogen peroxide to water and molecular
oxygen. Catalases also utilize hydrogen peroxide to
oxidize various substrates such as alcohol or phenols.
Most catalases exist as tetramers of 65KD subunits
containing a protoheme IX group buried deep inside the
structure. In eukaryotic cells, catalases are located in
peroxisomes.
Length = 433
Score = 30.9 bits (70), Expect = 1.2
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 284 NRPFIFFIYHKPTDSIVFWGSIYKPEPQR--PYHENERNNEA---EELYQSEIFRLDFGN 338
N P F + KP PQ P + + + E L+Q D G
Sbjct: 82 NTPIFFIRDAIKFPDFIH---AQKPNPQTALPDADRFWDFLSLRPESLHQVSFLFSDRGI 138
Query: 339 PASARFVNNY 348
PA+ R +N Y
Sbjct: 139 PAAYRHMNGY 148
>gnl|CDD|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase.
Length = 465
Score = 29.7 bits (67), Expect = 2.8
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 23/67 (34%)
Query: 98 AIRSVMTKNQNVVFAPLSIVGALALVLLGSDGQTKDEL--------THFMGVATGRSLSN 149
++ VM + A L+ VG DG ++EL T F G+ G LS
Sbjct: 280 FLKRVMERLPG---ARLAFVG---------DGPYREELEKMFAGTPTVFTGMLQGDELS- 326
Query: 150 NPEAYAS 156
+AYAS
Sbjct: 327 --QAYAS 331
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional.
Length = 288
Score = 28.4 bits (64), Expect = 5.1
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 113 PLSIVGALALVLLGSDGQTKDELT-----HFMGVATGRSLSNNPEAYASFLEKMRNEVYM 167
+ +G+L L++L T + F G L+ NP A A+ L+K+ V
Sbjct: 177 GGNPIGSLLLIILAPIAATLIQFAISRQREFSADEGGARLTGNPLALANALQKLEKGVRY 236
Query: 168 YFILPKNP 175
+ NP
Sbjct: 237 IPLKNGNP 244
>gnl|CDD|225236 COG2361, COG2361, Uncharacterized conserved protein [Function
unknown].
Length = 117
Score = 27.3 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 159 EKMRNEVYMYFILPKNPDLSEFTKDLDYDKFS 190
K + VY+Y IL + E+TKD+DY++F
Sbjct: 2 MKKDDRVYLYDILQAAERIEEYTKDMDYEEFI 33
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 28.4 bits (64), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 239 MLDDRGV-AVDQVFHKVDI-------EVTEQGTVAAASTGIIIT 274
+L D GV +D+ F K+D E EQ T++ A GI T
Sbjct: 297 VLADNGVCCIDE-FDKMDDSDRTAIHEAMEQQTISIAKAGITTT 339
>gnl|CDD|236264 PRK08432, PRK08432, flagellar motor switch protein FliY; Validated.
Length = 283
Score = 28.1 bits (63), Expect = 7.2
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 112 APLSIVGALALVLLGSDGQTKDELTHFMGVATGRSLSNNPEAYASFLE------KMRNEV 165
AP+ +V AL+ ++LG +G +K+E+ A SN A ++ L K+ +
Sbjct: 63 APVVLVTALSDLMLGGEGISKEEMDDDDLDAAKEIASNIFGAISTSLGAQKLLPKLNFTI 122
Query: 166 YMYFILPKNPDLSEFTKDLDYD 187
+ +NPDLS++ K +
Sbjct: 123 ENVEFVDENPDLSDYAKLFLFS 144
>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase.
Length = 263
Score = 28.1 bits (63), Expect = 7.8
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 66 FMGVATGRSLSNKLTAHSLRRGITQMTLDMERAIRSVMTKNQNVVFAPL 114
+MG+ T SL+ KL A L A+ T Q VVF L
Sbjct: 183 YMGLGTLPSLAEKLIAAGLPPDTP------AAAVERGTTPEQRVVFGTL 225
>gnl|CDD|224108 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation,
ribosomal structure and biogenesis].
Length = 248
Score = 28.0 bits (63), Expect = 8.1
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 232 SKSDLSNMLDDRGVAVDQVFHKVDIEVTEQGTVAAASTGIIITRISKPTVKINRPFIFFI 291
S+ + ++++ V V+ T G V + + +++ ++ +
Sbjct: 16 SRREAEKLIEEGRVTVNGKV------ATLGGVVV--DPDDDVVEVDGKRIELKEERVYLL 67
Query: 292 YHKPTD 297
+KP
Sbjct: 68 LNKPRG 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.370
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,924,029
Number of extensions: 1731436
Number of successful extensions: 1750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1709
Number of HSP's successfully gapped: 92
Length of query: 357
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 259
Effective length of database: 6,590,910
Effective search space: 1707045690
Effective search space used: 1707045690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)