BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5103
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DC64|MET16_DANRE Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2
SV=1
Length = 471
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 81/108 (75%), Gaps = 3/108 (2%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
M+ NK MHPRN+Y+ PPDF LA +YPEF+KH+ L+G++ NF++P+A+R T TLL
Sbjct: 1 MALNKSMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
++DFGL +EIP RL+PT+PLRLNYI W+EDL+ +P GIDIG
Sbjct: 61 KEDFGLTIEIPLERLIPTVPLRLNYIHWVEDLIGGQ--GNPQRGIDIG 106
>sp|Q09357|MET16_CAEEL Methyltransferase-like protein 16 homolog OS=Caenorhabditis elegans
GN=mett-10 PE=1 SV=2
Length = 479
Score = 128 bits (321), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/108 (57%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
MS N MHPRN YR PPDFK LA+EYPEFRK +GK+ F+F+ A+R T TLL
Sbjct: 1 MSQNNEMHPRNPYRNKPPDFKALAVEYPEFRKFCQYVSNGKVTFDFKKDAAVRCLTQTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
+KDF L+VEIPP LVP +P +LNY L I+DLL+AN+++ + GIDIG
Sbjct: 61 KKDFNLDVEIPPGHLVPRVPQKLNYCLLIDDLLKANKLTKNVIGIDIG 108
>sp|Q5ZIA0|MET16_CHICK Methyltransferase-like protein 16 OS=Gallus gallus GN=METTL16 PE=2
SV=1
Length = 558
Score = 124 bits (312), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/110 (51%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
M+ NK MH RN+Y+ PPDF LA +YPEFR+H+ L+G++ NF++P+A+R T TLL
Sbjct: 1 MALNKSMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPI--TGIDIG 107
++DFGL ++IP RL+PT+PLRLNYI W+EDL+ + GIDIG
Sbjct: 61 KEDFGLTIDIPLERLIPTVPLRLNYIHWVEDLIGHQDADKRVLRRGIDIG 110
>sp|Q9CQG2|MET16_MOUSE Methyltransferase-like protein 16 OS=Mus musculus GN=Mettl16 PE=1
SV=1
Length = 553
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 83/111 (74%), Gaps = 5/111 (4%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
M+ +K MH RN+Y+ PPDF LA +YP+F++H+ L+G++ NF++P+A+R T TLL
Sbjct: 1 MALSKSMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPIT---GIDIG 107
R+DFGL+++IP RL+PT+PLRLNYI W+EDL+ +Q S T GIDIG
Sbjct: 61 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLI-GHQDSDKTTLRRGIDIG 110
>sp|Q6GR37|MET16_XENLA Methyltransferase-like protein 16 OS=Xenopus laevis GN=mettl16 PE=2
SV=1
Length = 547
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
M+ NK MHPRN+Y+ PPDF LA +YPEF++H++ L+G++ NF++P A+R T TLL
Sbjct: 1 MALNKSMHPRNRYKDKPPDFAYLASKYPEFKQHVNVNLAGRVSLNFKDPCAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPI--TGIDIG 107
++DFGL ++IP RL+PT+PLRLNYI W+EDL+ + GIDIG
Sbjct: 61 KEDFGLTIDIPLERLIPTVPLRLNYIHWVEDLINYHDSDKTALRRGIDIG 110
>sp|Q86W50|MET16_HUMAN Methyltransferase-like protein 16 OS=Homo sapiens GN=METTL16 PE=1
SV=2
Length = 562
Score = 120 bits (300), Expect = 3e-27, Method: Composition-based stats.
Identities = 56/110 (50%), Positives = 83/110 (75%), Gaps = 3/110 (2%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
M+ +K MH RN+Y+ PPDF LA +YP+F++H+ L+G++ NF++P+A+R T TLL
Sbjct: 1 MALSKSMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLL--EANQISSPITGIDIG 107
R+DFGL+++IP RL+PT+PLRLNYI W+EDL+ + + S+ GIDIG
Sbjct: 61 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIG 110
>sp|Q61J97|MET16_CAEBR Methyltransferase-like protein 16 homolog OS=Caenorhabditis
briggsae GN=CBG09879 PE=3 SV=1
Length = 481
Score = 120 bits (300), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 7 MHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL 65
MHPRN YR PPDFK LAIEYPEFRK +GK+ +F+ A+R T TLL+KDF L
Sbjct: 7 MHPRNPYRDKPPDFKALAIEYPEFRKFCQYVSNGKVTLDFRKDAAVRCLTQTLLKKDFSL 66
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
NV +P LVP +P +LNY L I+D+L+AN I+S + GIDIG
Sbjct: 67 NVNLPAGHLVPRVPQKLNYCLLIDDILQANSITSNVVGIDIG 108
>sp|Q7K3B9|MET16_DROME Methyltransferase-like protein 16 homolog OS=Drosophila
melanogaster GN=CG7544 PE=2 SV=1
Length = 305
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
MHPRN R PD+ ++AI+Y +FR+ EL+GK+ NF+N LR T LL++ + L+
Sbjct: 13 MHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVNFRNEKTLRELTKMLLKEYYDLD 72
Query: 67 VEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
V+ P LVPTL LRLNYILW+EDL+E + + I GIDIG
Sbjct: 73 VDFAPGSLVPTLALRLNYILWLEDLMEPLNLQN-IRGIDIG 112
>sp|Q290Z2|MET16_DROPS Methyltransferase-like protein 16 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA20428 PE=3 SV=2
Length = 305
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 4 NKF-MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKD 62
NK+ MHPRN RVPPD+ +LAI+Y +FR+ EL+GK+ NF+N LR + LL++
Sbjct: 7 NKYAMHPRNILRVPPDYTKLAIKYRDFRQVCELELTGKVSVNFRNEKTLRELSKMLLKEY 66
Query: 63 FGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
F L+V+ P LVPTL LRLNYILW+ED+L + + + GID+G
Sbjct: 67 FELDVDFAPGSLVPTLALRLNYILWLEDMLLPLNLET-VRGIDVG 110
>sp|Q554C9|MET16_DICDI Methyltransferase-like protein 16 homolog OS=Dictyostelium
discoideum GN=DDB_G0275203 PE=3 SV=1
Length = 568
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 4 NKFMHPRNKYRV-PPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKD 62
N MH N YR PP+FK LA +YP F K++ + ++++ +A + T LL D
Sbjct: 39 NDSMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATKELTRVLLDHD 98
Query: 63 FGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQI--------SSPITGIDIG 107
FGL +E+P L PTL LR+NY+ WI D L+ +I + I GIDIG
Sbjct: 99 FGLRIELPDNYLCPTLTLRINYLYWISDQLKNLKIILNDNDNDNKIIKGIDIG 151
>sp|A4VP05|RLMF_PSEU5 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
stutzeri (strain A1501) GN=rlmF PE=3 SV=1
Length = 327
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN++ DF +L PE +++ GK +F NPDA+R+F LLR+ +G+
Sbjct: 18 LHPRNRHSGRYDFPKLIAACPELGEYVILNPYGKQSIDFANPDAVRVFNRALLRQFYGIQ 77
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQI-----SSPITGIDIG 107
+ +IP L P +P R +Y+ + DLL A+ + + +DIG
Sbjct: 78 HWDIPAGYLCPPVPGRADYLHGLADLLAADNAGVIPRGAAVRVLDIG 124
>sp|A0M4S0|RLMF_GRAFK Ribosomal RNA large subunit methyltransferase F OS=Gramella
forsetii (strain KT0803) GN=rlmF PE=3 SV=1
Length = 285
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
MHP N ++ DF+ L P+ + + Q G NF NP+A+ LL+ + +
Sbjct: 1 MHPDNIHKDSYDFEALTESNPQLSEFVFQNKYGTQTINFANPEAVLQLNKALLKFHYQVE 60
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
N IP L P +P R +YI ++ DLL I I GIDIG
Sbjct: 61 NWSIPKQYLCPPIPGRADYIHYLNDLLSEENIQGEIRGIDIG 102
>sp|Q3KHM8|RLMF_PSEPF Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rlmF PE=3 SV=1
Length = 340
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ DF L PE K + GK +F +PDA+R+F LL+ +G+
Sbjct: 31 LHPRNRHQGRYDFPALIKTTPELAKFVITNPYGKESIDFASPDAVRVFNRALLKSFYGIQ 90
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEAN 95
+ +IP L P +P R +YI ++ DLL +N
Sbjct: 91 HWDIPADYLCPPVPGRADYIHFLADLLASN 120
>sp|A6W2M9|RLMF_MARMS Ribosomal RNA large subunit methyltransferase F OS=Marinomonas sp.
(strain MWYL1) GN=rlmF PE=3 SV=1
Length = 327
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN +R DF LA PE + G +F NP+A++ LL +G+
Sbjct: 18 LHPRNPHRARYDFALLADSCPELSGFIQLNQYGNESVDFANPNAVKTLNRALLNHFYGVA 77
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEANQIS 98
+IPP L P +P R +YI ++ DLL A+ +
Sbjct: 78 FWDIPPGYLCPPIPGRADYIHYLADLLAASNLG 110
>sp|Q4ZXI1|RLMF_PSEU2 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=rlmF PE=3 SV=1
Length = 328
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ DF +L PE + GK +F NP A+R+F LL+ +G+
Sbjct: 27 LHPRNRHQGQYDFAKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKAFYGIA 86
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL-EANQISSP----ITGIDIG 107
+ +IP L P +P R +Y+ ++ DLL E N+ P I +DIG
Sbjct: 87 HWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIPRGASIKALDIG 133
>sp|Q6LIW6|RLMF_PHOPR Ribosomal RNA large subunit methyltransferase F OS=Photobacterium
profundum GN=rlmF PE=3 SV=1
Length = 338
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN + DF L + P+ + + G L +F +P A+++ LL + +
Sbjct: 15 LHPRNPHSQRYDFNALILSCPDLTPFVAENQFGDLSVDFSDPAAVKMLNKALLHHFYNVE 74
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL-EANQISSP----ITGIDIG 107
N +IPP L P +P R +YI I DLL ++N+ P I G+DIG
Sbjct: 75 NWDIPPGYLCPPIPGRADYIHHIADLLAKSNEGVIPQGKHINGLDIG 121
>sp|Q0HP08|RLMF_SHESM Ribosomal RNA large subunit methyltransferase F OS=Shewanella sp.
(strain MR-4) GN=rlmF PE=3 SV=1
Length = 364
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFG 64
K +HPRN + DF L + YP+ + + G L +F +P A++ LL+ +G
Sbjct: 51 KRLHPRNLHINGYDFPVLMVSYPKLKAFVRPTPYGDLSIDFADPSAVKTLNAALLQHHYG 110
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL-EANQI--SSPITGIDIG 107
L +IP L P +P R++Y+ ++ DLL E ++ ++ I +DIG
Sbjct: 111 LAFWDIPKGALCPPIPGRVDYLHYLADLLFEGGKVKRAAAIRALDIG 157
>sp|Q1QEW1|RLMF_PSYCK Ribosomal RNA large subunit methyltransferase F OS=Psychrobacter
cryohalolentis (strain K5) GN=rlmF PE=3 SV=2
Length = 345
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN ++ DF+ L PE KH G+ NF + A+R+ LL +G+
Sbjct: 29 LHPRNPHQGRYDFEVLTRALPELAKHTITNPKGESTINFSDSAAVRVLNQALLANYYGVK 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLL----EANQISSPITGIDI 106
+IP L P +P R +YI +I DLL N+ ++P TG +I
Sbjct: 89 FWDIPEGYLCPPIPGRADYIHYIADLLAQTTHVNKDNTPPTGKEI 133
>sp|Q1I5F5|RLMF_PSEE4 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
entomophila (strain L48) GN=rlmF PE=3 SV=1
Length = 316
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLR 60
M+ +HPRN+++ DF L +P+ + GK +F NP+A+R+F LL+
Sbjct: 1 MTDKPTLHPRNRHQGRYDFPALIKAHPDLARFTITNPYGKPSIDFANPEAVRVFNRALLK 60
Query: 61 KDFGL-NVEIPPMRLVPTLPLRLNYILWIEDLLEANQI-----SSPITGIDIG 107
+G+ + +IP L P +P R +YI + DLL + + + +DIG
Sbjct: 61 AQYGVQHWDIPADYLCPPIPGRADYIHVLADLLAEDNAGDVPRGAQVRALDIG 113
>sp|B1JBB3|RLMF_PSEPW Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain W619) GN=rlmF PE=3 SV=1
Length = 316
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLR 60
M+ +HPRN+++ DF L +P+ + GK +F NP+A+R+F LL+
Sbjct: 1 MTQKPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLK 60
Query: 61 KDFGL-NVEIPPMRLVPTLPLRLNYILWIEDLLEANQI-----SSPITGIDIG 107
+G+ + +IP L P +P R +YI DLL + + + +DIG
Sbjct: 61 AQYGIQHWDIPADYLCPPIPGRADYIHVAADLLAEDNAGEVPKGAQVRALDIG 113
>sp|B0KQK4|RLMF_PSEPG Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain GB-1) GN=rlmF PE=3 SV=1
Length = 316
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLR 60
M+ +HPRN+++ DF L +P+ + GK +F NP+A+R+F LL+
Sbjct: 1 MTEKPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLK 60
Query: 61 KDFGL-NVEIPPMRLVPTLPLRLNYILWIEDLLE---ANQI--SSPITGIDIG 107
+G+ + +IP L P +P R +YI DLL A ++ + + +DIG
Sbjct: 61 AQYGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNAGEVPKGAQVRALDIG 113
>sp|Q88P77|RLMF_PSEPK Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain KT2440) GN=rlmF PE=3 SV=1
Length = 317
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ DF L +P+ + GK +F NP+A+R+F LL+ +G+
Sbjct: 8 LHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKAQYGIQ 67
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQI-----SSPITGIDIG 107
+ +IP L P +P R +YI DLL + + + +DIG
Sbjct: 68 HWDIPADYLCPPIPGRADYIHVAADLLADDNAGDVPRGAQVRALDIG 114
>sp|A5VZ65|RLMF_PSEP1 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=rlmF PE=3 SV=1
Length = 317
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 1 MSFNK-FMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLL 59
M+ NK +HPRN+++ DF L +P+ + GK +F NP+A+R+F LL
Sbjct: 1 MTPNKPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALL 60
Query: 60 RKDFGL-NVEIPPMRLVPTLPLRLNYILWIEDLLEANQI-----SSPITGIDIG 107
+ +G+ + +IP L P +P R +YI DLL + + + +D+G
Sbjct: 61 KAQYGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNAGDVPRGTQVRALDVG 114
>sp|Q4FVS6|RLMF_PSYA2 Ribosomal RNA large subunit methyltransferase F OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=rlmF PE=3 SV=1
Length = 345
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN ++ DF L PE KH G+ NF + A+R+ LL +G+
Sbjct: 29 LHPRNPHQGRYDFVALTHALPELAKHTITNPKGEPTINFSDSAAVRVLNQALLAHYYGVK 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLL----EANQISSPITGIDI 106
+IP L P +P R +YI +I DLL N+ ++P TG +I
Sbjct: 89 FWDIPEGYLCPPIPGRADYIHYIADLLAQTTHVNKDNTPPTGKEI 133
>sp|Q4KHU0|RLMF_PSEF5 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=rlmF PE=3
SV=2
Length = 341
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ DF QL PE + + GK +F +P A+R+F LL+ +G+
Sbjct: 31 LHPRNRHQGRYDFPQLIKSTPELGQFVILNPYGKESIDFADPAAVRVFNRALLKAFYGIA 90
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEA-NQISSP 100
+ +IP L P +P R +Y+ ++ DLL + NQ P
Sbjct: 91 HWDIPADFLCPPVPGRADYVHFLADLLASHNQGEIP 126
>sp|A4TM00|RLMF_YERPP Ribosomal RNA large subunit methyltransferase F OS=Yersinia pestis
(strain Pestoides F) GN=rlmF PE=3 SV=1
Length = 336
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|C3LMU1|RLMF_VIBCM Ribosomal RNA large subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rlmF PE=3 SV=1
Length = 362
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L PE + H+ + G+ NF +P ++++ LL +G+
Sbjct: 49 LHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHYGVT 108
Query: 67 V-EIPPMRLVPTLPLRLNYILWIED-LLEAN-QIS-SPITGIDIG 107
+IP L P +P R +YI + D LL+ N Q++ S + +DIG
Sbjct: 109 YWDIPEGFLCPPIPGRADYIHRVADLLLKGNPQLNHSQVRALDIG 153
>sp|B8E3W0|RLMF_SHEB2 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS223) GN=rlmF PE=3 SV=1
Length = 365
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLR 60
+ K +HPRN + DF L +P + + G L +F +P A++ LL+
Sbjct: 50 VEIKKALHPRNAHLNGYDFPALISAFPRLKTFVRPTPYGALSIDFADPLAVKTLNAALLK 109
Query: 61 KDFGLNV-EIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITG---IDIG 107
+G+ +IP L P +P R++Y+ ++ DLL S I+ +DIG
Sbjct: 110 HHYGIGAWDIPQGALCPPIPGRVDYVHYVADLLAEGDKSCAISKARVLDIG 160
>sp|Q9KRM2|RLMF_VIBCH Ribosomal RNA large subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rlmF PE=3 SV=1
Length = 362
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L PE + H+ + G+ NF +P ++++ LL +G+
Sbjct: 49 LHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHYGVT 108
Query: 67 V-EIPPMRLVPTLPLRLNYILWIED-LLEAN-QIS-SPITGIDIG 107
+IP L P +P R +YI + D LL+ N Q++ S + +DIG
Sbjct: 109 YWDIPEGFLCPPIPGRADYIHRVADLLLKGNPQLNHSQVRALDIG 153
>sp|B1JH95|RLMF_YERPY Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rlmF
PE=3 SV=2
Length = 336
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|Q669D4|RLMF_YERPS Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rlmF
PE=3 SV=1
Length = 336
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|B2K7Y6|RLMF_YERPB Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rlmF
PE=3 SV=2
Length = 336
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|A7FGU1|RLMF_YERP3 Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rlmF PE=3 SV=1
Length = 336
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|A9R6I2|RLMF_YERPG Ribosomal RNA large subunit methyltransferase F OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rlmF PE=3 SV=1
Length = 336
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLTPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|A4SKI2|RLMF_AERS4 Ribosomal RNA large subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rlmF PE=3 SV=1
Length = 325
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ P DF L + PE R + G +F +P A++ LL +G+
Sbjct: 21 LHPRNRHQAPYDFDALCLRTPELRPLVFVNEHGTQTLDFADPAAVKALNKALLALHYGIA 80
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITG-----IDIG 107
+ ++P L P +P R++Y+ + DLL + P TG +DIG
Sbjct: 81 HWDLPAGYLCPPIPGRVDYLHRVADLLAESAGCVP-TGKGVRVLDIG 126
>sp|A6H0G2|RLMF_FLAPJ Ribosomal RNA large subunit methyltransferase F OS=Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511) GN=rlmF
PE=3 SV=1
Length = 314
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN ++ DF+ L E + H+ NF NP+A++ LL + +
Sbjct: 12 LHPRNLHKFGYDFEALTTCSSELKNHVFTNEYDTQTINFSNPEAVKALNNALLIAYYNIK 71
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEA--NQI---SSPITGIDIG 107
N IP L P +P R +Y+ +I DLL NQI + G+DIG
Sbjct: 72 NWGIPQDYLCPPIPGRADYLHYIADLLATTNNQIIPEGENVIGLDIG 118
>sp|Q48MF3|RLMF_PSE14 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rlmF PE=3 SV=2
Length = 328
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ DF +L PE + GK +F +P A+R+F LL+ +G+
Sbjct: 27 LHPRNRHQGHYDFAKLIKSSPELAAFVILNPYGKESIDFADPQAVRVFNRALLKAFYGIA 86
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL-EANQISSP----ITGIDIG 107
+ +IP L P +P R +Y+ ++ DLL E N+ P I +DIG
Sbjct: 87 HWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIPRGASIKALDIG 133
>sp|C3K6G1|RLMF_PSEFS Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
fluorescens (strain SBW25) GN=rlmF PE=3 SV=1
Length = 339
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN++ DF+ L PE + + GK +F +PDA+R+F LL+ +G+
Sbjct: 31 LHPRNRHTGRYDFQALIKTTPELAQFVIINPYGKESIDFASPDAVRVFNRALLKSFYGIQ 90
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEA 94
+ +IP L P +P R +Y+ ++ DLL +
Sbjct: 91 HWDIPADYLCPPVPGRADYVHFLADLLAS 119
>sp|A1RQ03|RLMF_SHESW Ribosomal RNA large subunit methyltransferase F OS=Shewanella sp.
(strain W3-18-1) GN=rlmF PE=3 SV=1
Length = 357
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFG 64
K +HPRN + DF L +P + G L +F +P+A++ T LL+ +G
Sbjct: 46 KALHPRNVHINGYDFNALIKAFPRLNAFVRPTSFGGLSIDFADPEAVKTLNTALLKHHYG 105
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL---EANQISSPITGIDIG 107
++ +IP L P +P R++Y+ ++ DLL + + + ++ +DIG
Sbjct: 106 IDFWDIPKGALCPPIPGRVDYLHYLADLLAEGDHHLVMDRVSVLDIG 152
>sp|A4Y1N1|RLMF_SHEPC Ribosomal RNA large subunit methyltransferase F OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rlmF PE=3
SV=1
Length = 357
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFG 64
K +HPRN + DF L +P + G L +F +P+A++ T LL+ +G
Sbjct: 46 KALHPRNVHINGYDFNALIKAFPRLNAFVRPTSFGGLSIDFADPEAVKTLNTALLKHHYG 105
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL---EANQISSPITGIDIG 107
++ +IP L P +P R++Y+ ++ DLL + + + ++ +DIG
Sbjct: 106 IDFWDIPKGALCPPIPGRVDYLHYLADLLAEGDHHLVMDRVSVLDIG 152
>sp|Q12T32|RLMF_SHEDO Ribosomal RNA large subunit methyltransferase F OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=rlmF PE=3 SV=1
Length = 360
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 3 FNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKD 62
K +HPRN ++ DF L+ P + G + +F NPDA++ LL
Sbjct: 42 LTKALHPRNVHKYGYDFAALSKTLPALTPFVGPNAYGNISIDFANPDAVKQLNAALLLHH 101
Query: 63 FGL-NVEIPPMRLVPTLPLRLNYILWIEDLLEA---NQISSPITGIDIG 107
+ + + +IP L P +P R++Y+ ++ DLL A + + I +DIG
Sbjct: 102 YSIRDWDIPHGYLCPPIPGRVDYLHYLADLLSAPHKGKANRNIRALDIG 150
>sp|Q64RQ5|RLMF_BACFR Ribosomal RNA large subunit methyltransferase F OS=Bacteroides
fragilis (strain YCH46) GN=rlmF PE=3 SV=1
Length = 305
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLR 60
M+ +H RN++ DF +L EYP +K + G +F NP A++ LL
Sbjct: 1 MAERNELHKRNRHNGQYDFSRLTEEYPPLKKFIVLNAYGTTSIDFFNPRAVKALNKALLI 60
Query: 61 KDFGLNV-EIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGI 104
+G+ +IP L P +P R +YI +I DL++ + IS TG+
Sbjct: 61 SCYGIRYWDIPKNYLCPPIPGRADYIHYIADLIQPD-ISDESTGL 104
>sp|A1JU40|RLMF_YERE8 Ribosomal RNA large subunit methyltransferase F OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rlmF PE=3 SV=1
Length = 335
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ LL+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISIDFASPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADFLCPPIPGRADYVHHLADLLAS 117
>sp|Q0I0H7|RLMF_SHESR Ribosomal RNA large subunit methyltransferase F OS=Shewanella sp.
(strain MR-7) GN=rlmF PE=3 SV=1
Length = 364
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFG 64
K +HPRN + DF L YP+ + + G L +F +P A++ LL +G
Sbjct: 51 KRLHPRNLHINGYDFPALMASYPKLKAFVRPTPYGALSIDFADPLAVKTLNAALLLHHYG 110
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL-EANQI--SSPITGIDIG 107
L +IP L P +P R++Y+ ++ DLL E ++ ++ I +DIG
Sbjct: 111 LAFWDIPKGALCPPIPGRVDYLHYLADLLFEGGKVKRAAAIRALDIG 157
>sp|Q5LBA7|RLMF_BACFN Ribosomal RNA large subunit methyltransferase F OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=rlmF PE=3
SV=1
Length = 305
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLR 60
M+ +H RN++ DF +L EYP +K + G +F NP A++ LL
Sbjct: 1 MAERNELHKRNRHNGQYDFSRLTEEYPPLKKFIVLNAYGTTSIDFFNPRAVKALNKALLI 60
Query: 61 KDFGLNV-EIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGI 104
+G+ +IP L P +P R +YI +I DL++ + IS TG+
Sbjct: 61 SYYGIRYWDIPKNYLCPPIPGRADYIHYIADLIQPD-ISDESTGL 104
>sp|Q887M4|RLMF_PSESM Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmF PE=3 SV=2
Length = 328
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGL- 65
+HPRN+++ DF +L PE + GK +F NP A+R+F LL+ +G+
Sbjct: 27 LHPRNRHQGHYDFPKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKAFYGIA 86
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQ-----ISSPITGIDIG 107
+ +IP L P +P R +Y+ ++ D+L + + + +DIG
Sbjct: 87 HWDIPADYLCPPIPGRADYLHFLADVLAEDHEGVIPRGASVKALDIG 133
>sp|A1SBR7|RLMF_SHEAM Ribosomal RNA large subunit methyltransferase F OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rlmF PE=3
SV=1
Length = 319
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 8 HPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN- 66
HP N +R DF L +P + + G L +F P+A++ LL+ +G++
Sbjct: 22 HPDNAHRDGYDFSALVASHPPLKPFVRANAYGNLSIDFALPEAVKALNCALLKHHYGISR 81
Query: 67 VEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107
+IP L P +P R++Y+ +EDLL + + +DIG
Sbjct: 82 WDIPKGFLCPPIPGRVDYLHHLEDLLRQTPGTDGLPLLDIG 122
>sp|Q15VI3|RLMF_PSEA6 Ribosomal RNA large subunit methyltransferase F
OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=rlmF PE=3 SV=1
Length = 330
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
MHPRN +R L YP H+ + SG+ +F +++ LL +GLN
Sbjct: 26 MHPRNVHRNGYPMSALCQSYPTLEAHVIKAKSGQQSIDFSKAASVKALNAALLIHYYGLN 85
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEANQ-----ISSPITGIDIG 107
+ +IP L P +P R +YI + DLL + + + G+DIG
Sbjct: 86 MWDIPEGYLCPPVPGRADYIHGLADLLAKDNKGVVPTGNRVIGLDIG 132
>sp|A5WBC6|RLMF_PSYWF Ribosomal RNA large subunit methyltransferase F OS=Psychrobacter
sp. (strain PRwf-1) GN=rlmF PE=3 SV=1
Length = 327
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66
+HPRN ++ DF +L PE KH SG+ NF + DA+ LL + +
Sbjct: 24 LHPRNPHQGRYDFDKLIKALPELEKHAITNPSGEATINFSDADAVLTLNKALLAHHYNIK 83
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEANQISS 99
++P L P +P R +YI + DLL N S
Sbjct: 84 YWDLPKGYLCPPIPGRADYIHQVADLLNNNNSGS 117
>sp|A9KVB0|RLMF_SHEB9 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS195) GN=rlmF PE=3 SV=1
Length = 365
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFG 64
K +HPRN + DF L +P + + G L NF +P A++ LL+ +G
Sbjct: 54 KALHPRNAHLNGYDFPALISAFPRLKTFVRPTPYGALSVNFADPLAVKTLNAALLKHHYG 113
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
+ IP L P +P R++Y+ ++ DLL
Sbjct: 114 IGSWNIPEGALCPPIPGRVDYVHYVADLL 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.144 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,139,004
Number of Sequences: 539616
Number of extensions: 1624724
Number of successful extensions: 4523
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4262
Number of HSP's gapped (non-prelim): 140
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)