Query psy5103
Match_columns 109
No_of_seqs 115 out of 392
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:22:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05971 Methyltransf_10: Prot 100.0 2E-50 4.3E-55 322.9 5.3 108 1-108 1-111 (299)
2 PRK11727 23S rRNA mA1618 methy 100.0 1.7E-45 3.8E-50 296.2 11.2 108 1-108 10-123 (321)
3 KOG2912|consensus 100.0 8E-45 1.7E-49 295.2 10.4 109 1-109 1-112 (419)
4 COG3129 Predicted SAM-dependen 100.0 4.6E-31 1E-35 207.7 8.1 83 26-108 1-87 (292)
5 KOG3357|consensus 77.9 1 2.2E-05 33.4 0.8 53 20-73 30-90 (167)
6 PF12368 DUF3650: Protein of u 74.1 1.2 2.5E-05 24.6 0.2 9 6-14 3-11 (28)
7 PRK14966 unknown domain/N5-glu 72.0 5.2 0.00011 34.1 3.8 41 62-108 220-260 (423)
8 TIGR00536 hemK_fam HemK family 65.3 7.5 0.00016 30.4 3.2 45 61-108 79-123 (284)
9 TIGR03534 RF_mod_PrmC protein- 63.5 12 0.00026 27.7 3.9 42 62-108 55-96 (251)
10 cd02873 GH18_IDGF The IDGF's ( 60.9 22 0.00047 29.6 5.3 76 19-94 65-181 (413)
11 PRK11805 N5-glutamine S-adenos 58.5 20 0.00042 28.7 4.5 44 62-108 99-142 (307)
12 smart00636 Glyco_18 Glycosyl h 56.3 43 0.00093 26.2 6.0 75 19-94 57-138 (334)
13 PRK09328 N5-glutamine S-adenos 54.3 24 0.00051 26.7 4.1 43 62-108 75-117 (275)
14 TIGR03533 L3_gln_methyl protei 51.2 33 0.00071 27.0 4.6 42 63-108 88-130 (284)
15 cd00598 GH18_chitinase-like Th 50.9 75 0.0016 22.7 6.2 75 18-95 54-137 (210)
16 KOG1271|consensus 48.9 14 0.0003 29.2 2.1 24 85-108 52-76 (227)
17 cd02872 GH18_chitolectin_chito 48.3 52 0.0011 26.3 5.4 76 19-95 61-147 (362)
18 COG2227 UbiG 2-polyprenyl-3-me 46.8 11 0.00025 30.0 1.4 28 78-108 41-68 (243)
19 COG2890 HemK Methylase of poly 46.3 24 0.00053 27.9 3.2 43 61-108 77-119 (280)
20 TIGR03704 PrmC_rel_meth putati 45.6 39 0.00084 26.1 4.2 44 62-108 52-95 (251)
21 cd06548 GH18_chitinase The GH1 45.4 57 0.0012 25.8 5.2 76 18-94 74-164 (322)
22 PF01113 DapB_N: Dihydrodipico 44.2 29 0.00062 23.9 3.0 26 40-67 69-94 (124)
23 PF14492 EFG_II: Elongation Fa 44.0 54 0.0012 20.7 4.1 48 20-69 26-73 (75)
24 cd06544 GH18_narbonin Narbonin 43.7 79 0.0017 24.7 5.7 71 18-95 60-142 (253)
25 PF07624 PSD2: Protein of unkn 40.6 24 0.00052 22.6 2.0 54 12-66 5-63 (76)
26 cd06591 GH31_xylosidase_XylS X 40.2 55 0.0012 26.1 4.4 47 15-66 93-151 (319)
27 PF13708 Methyltransf_27: Meth 39.3 39 0.00086 25.3 3.3 26 37-62 165-190 (194)
28 KOG2904|consensus 39.2 54 0.0012 27.3 4.2 46 62-108 111-157 (328)
29 TIGR02752 MenG_heptapren 2-hep 37.9 43 0.00094 24.6 3.3 24 85-108 31-54 (231)
30 cd06599 GH31_glycosidase_Aec37 37.8 87 0.0019 24.9 5.2 25 42-66 134-160 (317)
31 cd02879 GH18_plant_chitinase_c 36.7 1.2E+02 0.0026 23.9 5.8 72 18-94 55-138 (299)
32 PF07091 FmrO: Ribosomal RNA m 35.8 39 0.00084 27.1 2.8 68 15-109 48-115 (251)
33 PRK14103 trans-aconitate 2-met 35.4 41 0.00089 25.5 2.8 21 88-108 18-38 (255)
34 TIGR00671 baf pantothenate kin 34.9 57 0.0012 25.3 3.6 60 48-109 60-126 (243)
35 cd06597 GH31_transferase_CtsY 34.6 56 0.0012 26.5 3.7 26 41-66 152-179 (340)
36 PF03141 Methyltransf_29: Puta 34.5 39 0.00084 29.7 2.8 40 67-108 85-126 (506)
37 cd06594 GH31_glucosidase_YihQ 33.9 86 0.0019 25.1 4.6 27 41-67 131-160 (317)
38 PRK01544 bifunctional N5-gluta 32.9 63 0.0014 27.8 3.9 26 62-88 81-106 (506)
39 COG4536 CorB Putative Mg2+ and 32.9 27 0.00058 30.0 1.6 39 25-72 330-368 (423)
40 PRK13864 type IV secretion sys 32.6 68 0.0015 25.6 3.8 50 16-66 27-93 (245)
41 PF08984 DUF1858: Domain of un 32.3 20 0.00044 21.8 0.6 28 19-50 7-34 (59)
42 PLN02336 phosphoethanolamine N 32.2 45 0.00097 27.7 2.8 35 62-108 241-275 (475)
43 PF04847 Calcipressin: Calcipr 30.6 23 0.0005 26.8 0.8 65 17-82 10-90 (184)
44 PF12563 Hemolysin_N: Hemolyti 30.5 76 0.0016 24.5 3.6 40 27-67 66-107 (187)
45 PRK01683 trans-aconitate 2-met 29.6 59 0.0013 24.4 2.8 22 87-108 19-40 (258)
46 PTZ00098 phosphoethanolamine N 29.2 69 0.0015 24.7 3.2 21 88-108 41-61 (263)
47 PF13893 RRM_5: RNA recognitio 28.9 1E+02 0.0022 17.6 3.3 38 21-58 3-41 (56)
48 PRK01189 V-type ATP synthase s 28.2 57 0.0012 22.4 2.4 25 42-66 25-49 (104)
49 TIGR03587 Pse_Me-ase pseudamin 28.0 77 0.0017 23.6 3.2 24 83-108 29-52 (204)
50 PF06510 DUF1102: Protein of u 27.6 31 0.00068 25.6 1.0 22 28-49 14-35 (146)
51 PLN02244 tocopherol O-methyltr 27.3 1E+02 0.0022 24.8 4.0 32 77-108 91-127 (340)
52 PRK07580 Mg-protoporphyrin IX 27.2 1.1E+02 0.0023 22.3 3.8 24 85-108 49-72 (230)
53 PRK13322 pantothenate kinase; 27.0 2E+02 0.0043 22.3 5.5 62 48-109 58-126 (246)
54 TIGR03595 Obg_CgtA_exten Obg f 26.7 60 0.0013 20.6 2.1 17 42-58 24-40 (69)
55 cd06592 GH31_glucosidase_KIAA1 26.5 98 0.0021 24.5 3.7 26 41-66 130-157 (303)
56 TIGR03286 methan_mark_15 putat 26.2 1E+02 0.0022 26.3 3.9 29 28-56 93-123 (404)
57 cd06545 GH18_3CO4_chitinase Th 25.5 1.6E+02 0.0036 22.3 4.7 43 46-95 79-128 (253)
58 COG2264 PrmA Ribosomal protein 25.2 57 0.0012 26.7 2.2 19 85-108 153-171 (300)
59 PLN00107 FAD-dependent oxidore 24.8 84 0.0018 25.3 3.0 33 16-52 165-201 (257)
60 PF14330 DUF4387: Domain of un 24.6 72 0.0016 22.2 2.3 38 29-66 4-51 (99)
61 PRK14967 putative methyltransf 24.5 1.6E+02 0.0035 21.8 4.4 40 64-108 6-45 (223)
62 KOG4513|consensus 24.5 93 0.002 27.2 3.4 55 27-81 248-328 (531)
63 TIGR02130 dapB_plant dihydrodi 24.2 87 0.0019 25.3 3.1 21 41-61 72-92 (275)
64 COG1713 Predicted HD superfami 24.0 1.3E+02 0.0028 23.1 3.8 74 19-95 49-132 (187)
65 COG2230 Cfa Cyclopropane fatty 23.9 78 0.0017 25.7 2.7 16 93-108 66-81 (283)
66 cd02876 GH18_SI-CLP Stabilin-1 23.8 2E+02 0.0043 22.6 5.0 74 19-94 57-142 (318)
67 PF11968 DUF3321: Putative met 23.3 62 0.0014 25.4 2.0 24 85-108 36-60 (219)
68 PF02527 GidB: rRNA small subu 23.3 1.1E+02 0.0023 22.9 3.2 25 84-108 31-57 (184)
69 PLN02396 hexaprenyldihydroxybe 23.3 65 0.0014 26.2 2.2 43 66-108 90-140 (322)
70 KOG0942|consensus 23.1 30 0.00064 32.7 0.2 68 17-91 771-844 (1001)
71 TIGR00138 gidB 16S rRNA methyl 23.1 1.2E+02 0.0025 22.2 3.3 8 101-108 44-51 (181)
72 PF02353 CMAS: Mycolic acid cy 23.1 70 0.0015 25.2 2.3 17 92-108 55-71 (273)
73 cd06602 GH31_MGAM_SI_GAA This 22.6 1.3E+02 0.0027 24.4 3.7 28 42-69 131-161 (339)
74 PF02244 Propep_M14: Carboxype 22.3 1.1E+02 0.0023 18.7 2.6 59 42-107 2-67 (74)
75 cd06604 GH31_glucosidase_II_Ma 21.8 1.2E+02 0.0027 24.2 3.5 24 42-66 126-151 (339)
76 PRK13944 protein-L-isoaspartat 21.6 1.1E+02 0.0024 22.5 3.0 11 98-108 71-81 (205)
77 PRK11104 hemG protoporphyrinog 21.5 91 0.002 22.8 2.5 18 43-60 155-172 (177)
78 PF04989 CmcI: Cephalosporin h 21.3 74 0.0016 24.6 2.1 22 85-106 47-68 (206)
79 KOG0907|consensus 21.2 44 0.00095 22.8 0.7 18 17-35 41-58 (106)
80 TIGR01983 UbiG ubiquinone bios 21.0 1.2E+02 0.0026 22.0 3.0 24 85-108 30-54 (224)
81 PF04362 Iron_traffic: Bacteri 21.0 74 0.0016 21.7 1.8 33 42-74 54-86 (88)
82 PLN02775 Probable dihydrodipic 20.8 1.1E+02 0.0024 24.8 3.1 21 41-61 83-103 (286)
83 COG0289 DapB Dihydrodipicolina 20.7 98 0.0021 25.1 2.7 26 40-65 71-96 (266)
84 PRK15451 tRNA cmo(5)U34 methyl 20.7 1.6E+02 0.0034 22.3 3.7 30 78-108 36-65 (247)
85 PRK11867 2-oxoglutarate ferred 20.7 1.6E+02 0.0035 23.5 3.9 45 61-109 9-55 (286)
86 PF13979 SopA_C: SopA-like cat 20.5 1.7E+02 0.0037 22.2 3.8 45 43-96 95-139 (172)
No 1
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=100.00 E-value=2e-50 Score=322.89 Aligned_cols=108 Identities=44% Similarity=0.838 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCCCCccHHHHHHHCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCce-EEcCCCCcCCCCc
Q psy5103 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN-VEIPPMRLVPTLP 79 (109)
Q Consensus 1 m~~~~~mHprN~y~~~~DF~~La~~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~-~~lP~~~LcP~vP 79 (109)
||.++.|||||+|+.+|||++|+++||+|++|+..+++|+.+|||+|++||++||||||++||||+ |+||+|+||||||
T Consensus 1 ~~~~~~mHprN~~~~~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP 80 (299)
T PF05971_consen 1 MAQKKSMHPRNPYKDRYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIP 80 (299)
T ss_dssp ------------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HH
T ss_pred CCCcCCCCCCCCCCCCCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred chHHHHHHHHHHHhhcC--CCCCceEEeecc
Q psy5103 80 LRLNYILWIEDLLEANQ--ISSPITGIDIGR 108 (109)
Q Consensus 80 ~R~nYi~wi~dLl~~~~--~~~~v~glDIGT 108 (109)
||+||||||+|||..+. .+.+|+||||||
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGT 111 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGT 111 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCc
Confidence 99999999999999875 345899999998
No 2
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=100.00 E-value=1.7e-45 Score=296.21 Aligned_cols=108 Identities=31% Similarity=0.503 Sum_probs=101.4
Q ss_pred CCCCCCCCCCCCCCCCccHHHHHHHCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCce-EEcCCCCcCCCCc
Q psy5103 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN-VEIPPMRLVPTLP 79 (109)
Q Consensus 1 m~~~~~mHprN~y~~~~DF~~La~~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~-~~lP~~~LcP~vP 79 (109)
|..++.|||||+|+++|||++|+++||+|++||..|++|+.+|||+||+||++||||||++||||+ |+||+++||||||
T Consensus 10 ~~~~~~~h~rn~~~~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP 89 (321)
T PRK11727 10 SAQKPGLHPRNRHRGRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIP 89 (321)
T ss_pred CccccCCCCCCcCCCCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCC
Confidence 356789999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred chHHHHHHHHHHHhhcC---C--CCCceEEeecc
Q psy5103 80 LRLNYILWIEDLLEANQ---I--SSPITGIDIGR 108 (109)
Q Consensus 80 ~R~nYi~wi~dLl~~~~---~--~~~v~glDIGT 108 (109)
+|+||||||+|||..+. + +.++++|||||
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGt 123 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGV 123 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecC
Confidence 99999999999998753 2 35799999998
No 3
>KOG2912|consensus
Probab=100.00 E-value=8e-45 Score=295.15 Aligned_cols=109 Identities=54% Similarity=0.968 Sum_probs=103.8
Q ss_pred CCCCCCCCCCCCCC-CCccHHHHHHHCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCceEEcCCCCcCCCCc
Q psy5103 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLNVEIPPMRLVPTLP 79 (109)
Q Consensus 1 m~~~~~mHprN~y~-~~~DF~~La~~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~~~lP~~~LcP~vP 79 (109)
|++++.|||||+|+ +||||+.||..||+|++||..+.+|++++||+|++|+|+||++||++||||.++||+++|||+||
T Consensus 1 M~~~k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVP 80 (419)
T KOG2912|consen 1 MALSKSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVP 80 (419)
T ss_pred CCcccccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCC--CceEEeeccC
Q psy5103 80 LRLNYILWIEDLLEANQISS--PITGIDIGRV 109 (109)
Q Consensus 80 ~R~nYi~wi~dLl~~~~~~~--~v~glDIGT~ 109 (109)
||+||||||+|||.+...++ .++||||||.
T Consensus 81 nR~nYihwI~DLLss~q~~k~~i~~GiDIgtg 112 (419)
T KOG2912|consen 81 NRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTG 112 (419)
T ss_pred cchhhHHHHHHHhhcccCCCcceeeeeeccCc
Confidence 99999999999999876443 3669999984
No 4
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=207.68 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=78.7
Q ss_pred CCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCce-EEcCCCCcCCCCcchHHHHHHHHHHHhhcC--C-CCCc
Q psy5103 26 YPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLN-VEIPPMRLVPTLPLRLNYILWIEDLLEANQ--I-SSPI 101 (109)
Q Consensus 26 ~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~-~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~--~-~~~v 101 (109)
.|+|..|+..++.|+.+|||.||.||+.||||||.++|+++ ||||+++||||||||++|||+|+|||.++. + ++++
T Consensus 1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i 80 (292)
T COG3129 1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNI 80 (292)
T ss_pred CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCce
Confidence 48999999999999999999999999999999999999998 999999999999999999999999998864 3 4789
Q ss_pred eEEeecc
Q psy5103 102 TGIDIGR 108 (109)
Q Consensus 102 ~glDIGT 108 (109)
++|||||
T Consensus 81 ~~LDIGv 87 (292)
T COG3129 81 RILDIGV 87 (292)
T ss_pred EEEeecc
Confidence 9999998
No 5
>KOG3357|consensus
Probab=77.90 E-value=1 Score=33.44 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=42.3
Q ss_pred HHHHHHCCcchhchhhcCCC-c--EEeeCCCHHHHHHHHHH-----HHhhHhCceEEcCCCC
Q psy5103 20 KQLAIEYPEFRKHLHQELSG-K--LKFNFQNPDALRIFTTT-----LLRKDFGLNVEIPPMR 73 (109)
Q Consensus 20 ~~La~~~p~l~~~v~~~~~G-~--~~iDF~~~~Av~~Ltka-----LL~~dfgL~~~lP~~~ 73 (109)
..|.+.|..|-.|+..|++. + .++. ||++.++-..|+ |||-.|++++|||-.+
T Consensus 30 qrlkeey~sli~yvqnnk~~d~dwfrle-sn~egtrwfgkcwy~hnllkyefdvefdipity 90 (167)
T KOG3357|consen 30 QRLKEEYQSLIAYVQNNKSNDNDWFRLE-SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITY 90 (167)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcceEec-cCccccceehhhhHhhhhhhheeeeeecccccc
Confidence 57899999999999887753 1 3444 888888877665 8999999999999765
No 6
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=74.10 E-value=1.2 Score=24.55 Aligned_cols=9 Identities=56% Similarity=1.073 Sum_probs=7.5
Q ss_pred CCCCCCCCC
Q psy5103 6 FMHPRNKYR 14 (109)
Q Consensus 6 ~mHprN~y~ 14 (109)
+.||||.|-
T Consensus 3 r~hprNrYV 11 (28)
T PF12368_consen 3 RVHPRNRYV 11 (28)
T ss_pred ccCcchhhH
Confidence 469999995
No 7
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=72.02 E-value=5.2 Score=34.12 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=28.2
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.||+++.+.++-|+|+ -+.-.+++.++.. +....++|||||
T Consensus 220 F~G~~f~V~p~vLIPR----peTE~LVe~aL~~--l~~~~rVLDLGc 260 (423)
T PRK14966 220 FYGRRFAVNPNVLIPR----PETEHLVEAVLAR--LPENGRVWDLGT 260 (423)
T ss_pred ecCcEEEeCCCccCCC----ccHHHHHHHhhhc--cCCCCEEEEEeC
Confidence 6889999999999974 4444455555543 222347999997
No 8
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=65.34 E-value=7.5 Score=30.36 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=27.0
Q ss_pred hHhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 61 KDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 61 ~dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
..+|+++.++++-|+|. |---..+.++.+.+.. .....++||+||
T Consensus 79 ~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~--~~~~~~vLDlG~ 123 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPR-PETEELVEKALASLIS--QNPILHILDLGT 123 (284)
T ss_pred eEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhh--cCCCCEEEEEec
Confidence 45688899999999987 3333334443322211 112258999998
No 9
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=63.51 E-value=12 Score=27.66 Aligned_cols=42 Identities=24% Similarity=0.467 Sum_probs=29.0
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.+|....++.+.+.|+ |.-...+.++.+.+.. ...++||+||
T Consensus 55 ~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----~~~~ilDig~ 96 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----GPLRVLDLGT 96 (251)
T ss_pred EeceEEEECCCcccCC-CChHHHHHHHHHhccc----CCCeEEEEeC
Confidence 3666778888888876 4555667777665532 3357899997
No 10
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=60.95 E-value=22 Score=29.60 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=46.4
Q ss_pred HHHHHHHCCcchhchhhcCCCc---------EEeeCCCHHHHHHHHHHHH----hhHhC-c--eEEcCCCC---------
Q psy5103 19 FKQLAIEYPEFRKHLHQELSGK---------LKFNFQNPDALRIFTTTLL----RKDFG-L--NVEIPPMR--------- 73 (109)
Q Consensus 19 F~~La~~~p~l~~~v~~~~~G~---------~~iDF~~~~Av~~LtkaLL----~~dfg-L--~~~lP~~~--------- 73 (109)
|.+|.+++|.++-.+.....+. .+.-.+|++..+.+.+.+. +..|+ | +|+.|...
T Consensus 65 ~~~lk~~~p~lKvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~ 144 (413)
T cd02873 65 ITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFG 144 (413)
T ss_pred HHHHHhhCCCCeEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccc
Confidence 5678899999999887632211 1111356666555555544 44453 4 58888632
Q ss_pred --------------cCC--CCcchHHHHHHHHHHHhh
Q psy5103 74 --------------LVP--TLPLRLNYILWIEDLLEA 94 (109)
Q Consensus 74 --------------LcP--~vP~R~nYi~wi~dLl~~ 94 (109)
.++ ..-.|.||+.-|++|-..
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~d~~nf~~Ll~elr~~ 181 (413)
T cd02873 145 SAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNA 181 (413)
T ss_pred hhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHH
Confidence 121 234799999999988654
No 11
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=58.51 E-value=20 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=26.1
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.+|+++.+.++-|+|+..--.-....+.+.+.. ....++||+||
T Consensus 99 F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~---~~~~~VLDlG~ 142 (307)
T PRK11805 99 FCGLEFYVDERVLVPRSPIAELIEDGFAPWLED---PPVTRILDLCT 142 (307)
T ss_pred EcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc---CCCCEEEEEec
Confidence 357888999999998765433222222223321 11257999998
No 12
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=56.32 E-value=43 Score=26.23 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=43.3
Q ss_pred HHHHHHHCCcchhchhhcCCCcEEeeC----CCHHHHHHHHHHHH--hhHhCce-EEcCCCCcCCCCcchHHHHHHHHHH
Q psy5103 19 FKQLAIEYPEFRKHLHQELSGKLKFNF----QNPDALRIFTTTLL--RKDFGLN-VEIPPMRLVPTLPLRLNYILWIEDL 91 (109)
Q Consensus 19 F~~La~~~p~l~~~v~~~~~G~~~iDF----~~~~Av~~LtkaLL--~~dfgL~-~~lP~~~LcP~vP~R~nYi~wi~dL 91 (109)
|.+|++++|.++-.+.....+. +-.| +|+++...+.+.+. .+.||++ ++|-=...-+.-..|.+|+..|++|
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~-s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTE-SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCC-CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 6788899999988776543221 1123 45666666666553 3345444 4332222111114688999998887
Q ss_pred Hhh
Q psy5103 92 LEA 94 (109)
Q Consensus 92 l~~ 94 (109)
-..
T Consensus 136 r~~ 138 (334)
T smart00636 136 REA 138 (334)
T ss_pred HHH
Confidence 554
No 13
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=54.32 E-value=24 Score=26.66 Aligned_cols=43 Identities=23% Similarity=0.525 Sum_probs=27.5
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.+|.+..+.++-|+|+.-. --.+.|+.+.+. .....++|||||
T Consensus 75 f~~~~~~~~~~~lipr~~t-e~l~~~~~~~~~---~~~~~~vLDiG~ 117 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPET-EELVEWALEALL---LKEPLRVLDLGT 117 (275)
T ss_pred EcCcEEEECCCceeCCCCc-HHHHHHHHHhcc---ccCCCEEEEEcC
Confidence 4566677788889887544 345555553332 234568999997
No 14
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=51.16 E-value=33 Score=27.01 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=25.2
Q ss_pred hCceEEcCCCCcCCCCcchHHHHHHH-HHHHhhcCCCCCceEEeecc
Q psy5103 63 FGLNVEIPPMRLVPTLPLRLNYILWI-EDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 63 fgL~~~lP~~~LcP~vP~R~nYi~wi-~dLl~~~~~~~~v~glDIGT 108 (109)
+|+++.+.++-|+|...- ...+.+. .+.+. .....++||+||
T Consensus 88 ~g~~f~v~~~vlipr~~t-e~lv~~~l~~~~~---~~~~~~vLDlG~ 130 (284)
T TIGR03533 88 AGLEFYVDERVLIPRSPI-AELIEDGFAPWLE---PEPVKRILDLCT 130 (284)
T ss_pred cCcEEEECCCCccCCCch-HHHHHHHHHHHhc---cCCCCEEEEEeC
Confidence 478899999999976433 3333332 22221 112357899997
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=50.91 E-value=75 Score=22.74 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=44.0
Q ss_pred cHHHHHHHCCcchhchhhcCCCcEEe--eCCCHHHHHHHHHHHHh--hHhCce-----EEcCCCCcCCCCcchHHHHHHH
Q psy5103 18 DFKQLAIEYPEFRKHLHQELSGKLKF--NFQNPDALRIFTTTLLR--KDFGLN-----VEIPPMRLVPTLPLRLNYILWI 88 (109)
Q Consensus 18 DF~~La~~~p~l~~~v~~~~~G~~~i--DF~~~~Av~~LtkaLL~--~dfgL~-----~~lP~~~LcP~vP~R~nYi~wi 88 (109)
.+.+|+++.|.++-.+.....+.... -.+++++...+.+++.. +.||++ |+-|.. ... +.|-+|+..|
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~--~~~-~~~~~~~~ll 130 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGA--ADN-SDRENFITLL 130 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCC--cCc-cHHHHHHHHH
Confidence 45788888888887776533221111 13677777777666652 345443 333322 111 4589999998
Q ss_pred HHHHhhc
Q psy5103 89 EDLLEAN 95 (109)
Q Consensus 89 ~dLl~~~ 95 (109)
++|-...
T Consensus 131 ~~lr~~l 137 (210)
T cd00598 131 RELRSAL 137 (210)
T ss_pred HHHHHHh
Confidence 8887653
No 16
>KOG1271|consensus
Probab=48.91 E-value=14 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCCCCCc-eEEeecc
Q psy5103 85 ILWIEDLLEANQISSPI-TGIDIGR 108 (109)
Q Consensus 85 i~wi~dLl~~~~~~~~v-~glDIGT 108 (109)
|.|+.|+.....++++. ++||.||
T Consensus 52 v~wl~d~~~~~rv~~~A~~VlDLGt 76 (227)
T KOG1271|consen 52 VDWLKDLIVISRVSKQADRVLDLGT 76 (227)
T ss_pred HHHHHhhhhhhhhcccccceeeccC
Confidence 88999999855565554 9999998
No 17
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=48.34 E-value=52 Score=26.26 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=44.5
Q ss_pred HHHHHHHCCcchhchhhcCCCcEEeeC----CCHHHHHHHHHHHH----hhHh-Cc--eEEcCCCCcCCCCcchHHHHHH
Q psy5103 19 FKQLAIEYPEFRKHLHQELSGKLKFNF----QNPDALRIFTTTLL----RKDF-GL--NVEIPPMRLVPTLPLRLNYILW 87 (109)
Q Consensus 19 F~~La~~~p~l~~~v~~~~~G~~~iDF----~~~~Av~~LtkaLL----~~df-gL--~~~lP~~~LcP~vP~R~nYi~w 87 (109)
|.+|.+++|.++-.+.....+..+-.| +|+++...+.+.++ +..| || +|+-|..+= =+.-.|.+|+..
T Consensus 61 ~~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~-~~~~d~~~~~~l 139 (362)
T cd02872 61 FNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRG-GPPEDKENFVTL 139 (362)
T ss_pred HHHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCC-CCHHHHHHHHHH
Confidence 567788999999887653221111133 56666665555554 3333 34 366665321 111368999999
Q ss_pred HHHHHhhc
Q psy5103 88 IEDLLEAN 95 (109)
Q Consensus 88 i~dLl~~~ 95 (109)
|++|-...
T Consensus 140 l~~lr~~l 147 (362)
T cd02872 140 LKELREAF 147 (362)
T ss_pred HHHHHHHH
Confidence 98887653
No 18
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=46.81 E-value=11 Score=29.97 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=16.7
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 78 LPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 78 vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.|.|++||.=....--. -.+.++|||||
T Consensus 41 N~~rl~~i~~~~~~~~~---l~g~~vLDvGC 68 (243)
T COG2227 41 NPLRLDYIREVARLRFD---LPGLRVLDVGC 68 (243)
T ss_pred ccchhhhhhhhhhcccC---CCCCeEEEecC
Confidence 48899998655532000 13466777776
No 19
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=46.29 E-value=24 Score=27.91 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=27.7
Q ss_pred hHhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 61 KDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 61 ~dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
..+|++....++-|+|....=+ +++.++........ ++|||||
T Consensus 77 ~f~gl~~~v~~~vliPr~dTe~----Lve~~l~~~~~~~~-~ilDlGT 119 (280)
T COG2890 77 EFGGLRFKVDEGVLIPRPDTEL----LVEAALALLLQLDK-RILDLGT 119 (280)
T ss_pred eecceeeeeCCCceecCCchHH----HHHHHHHhhhhcCC-cEEEecC
Confidence 3678899999999999876532 44443321111122 8999998
No 20
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=45.65 E-value=39 Score=26.10 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=27.2
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.+|+++.++++-++|+-+... .+.++.+.+.. .+...++||+||
T Consensus 52 f~g~~~~v~~~vf~pr~~Te~-Lv~~~l~~~~~--~~~~~~vLDlg~ 95 (251)
T TIGR03704 52 FCGLRIAVDPGVFVPRRRTEF-LVDEAAALARP--RSGTLVVVDLCC 95 (251)
T ss_pred EcCeEEEECCCCcCCCccHHH-HHHHHHHhhcc--cCCCCEEEEecC
Confidence 357889999999997765533 33333333321 122357899987
No 21
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=45.38 E-value=57 Score=25.83 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=46.4
Q ss_pred cHHHHHHHCCcchhchhhcCCCcEEeeCC----CHHHHHHHHHHHH--hhHhCce-----EEcCCCC----cCCCCcchH
Q psy5103 18 DFKQLAIEYPEFRKHLHQELSGKLKFNFQ----NPDALRIFTTTLL--RKDFGLN-----VEIPPMR----LVPTLPLRL 82 (109)
Q Consensus 18 DF~~La~~~p~l~~~v~~~~~G~~~iDF~----~~~Av~~LtkaLL--~~dfgL~-----~~lP~~~----LcP~vP~R~ 82 (109)
.|.+|.+++|.++-.+.....+. +-.|+ |++..+.+.+.++ .+.||++ |+.|... -+=..-.|.
T Consensus 74 ~~~~lk~~~p~lkvl~siGG~~~-s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~ 152 (322)
T cd06548 74 QLRKLKQKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKE 152 (322)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCC-CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHH
Confidence 46788999999988876643222 22453 6666676766664 2345443 5556432 111124689
Q ss_pred HHHHHHHHHHhh
Q psy5103 83 NYILWIEDLLEA 94 (109)
Q Consensus 83 nYi~wi~dLl~~ 94 (109)
+|+..|++|-..
T Consensus 153 ~~~~ll~~Lr~~ 164 (322)
T cd06548 153 NFTLLLKELREA 164 (322)
T ss_pred HHHHHHHHHHHH
Confidence 999988888654
No 22
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=44.17 E-value=29 Score=23.86 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=20.4
Q ss_pred cEEeeCCCHHHHHHHHHHHHhhHhCceE
Q psy5103 40 KLKFNFQNPDALRIFTTTLLRKDFGLNV 67 (109)
Q Consensus 40 ~~~iDF~~~~Av~~LtkaLL~~dfgL~~ 67 (109)
.+-|||++|+++...-+..+++ |+.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~--g~~~ 94 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKH--GVPL 94 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHH--T-EE
T ss_pred CEEEEcCChHHhHHHHHHHHhC--CCCE
Confidence 4689999999999999999887 6653
No 23
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=43.98 E-value=54 Score=20.75 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=32.4
Q ss_pred HHHHHHCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCceEEc
Q psy5103 20 KQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLNVEI 69 (109)
Q Consensus 20 ~~La~~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~~~l 69 (109)
.+|++..|.|+-.... ..|...|-. ==+--.+.-...|++.||+++++
T Consensus 26 ~~l~~eDP~l~~~~d~-et~e~~l~g-~Gelhlev~~~~L~~~~~v~v~~ 73 (75)
T PF14492_consen 26 QKLSEEDPSLRVERDE-ETGELILSG-MGELHLEVLLERLKRRFGVEVEF 73 (75)
T ss_dssp HHHHHH-TTSEEEEET-TTSEEEEEE-SSHHHHHHHHHHHHHTTCEBEEE
T ss_pred HHHHhcCCeEEEEEcc-hhceEEEEE-CCHHHHHHHHHHHHHHHCCeeEe
Confidence 4788889988755432 356655543 34455677788899999998865
No 24
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=43.70 E-value=79 Score=24.74 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=42.4
Q ss_pred cHHHHHHHCCcchhchhhcCCCcE-EeeCCCHHHHHHHH------HHHHhhHhCce-----EEcCCCCcCCCCcchHHHH
Q psy5103 18 DFKQLAIEYPEFRKHLHQELSGKL-KFNFQNPDALRIFT------TTLLRKDFGLN-----VEIPPMRLVPTLPLRLNYI 85 (109)
Q Consensus 18 DF~~La~~~p~l~~~v~~~~~G~~-~iDF~~~~Av~~Lt------kaLL~~dfgL~-----~~lP~~~LcP~vP~R~nYi 85 (109)
.+.+|.+++|.+|-.+..-..+.. +.-+.++.+....- -.-+.+.||++ |+-|+ ..|.+|.
T Consensus 60 ~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-------~d~~~f~ 132 (253)
T cd06544 60 AVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-------ADPDTFV 132 (253)
T ss_pred HHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC-------cCHHHHH
Confidence 678999999999988876332210 11233443332221 11234555554 55453 2589999
Q ss_pred HHHHHHHhhc
Q psy5103 86 LWIEDLLEAN 95 (109)
Q Consensus 86 ~wi~dLl~~~ 95 (109)
..|.+|....
T Consensus 133 ~ll~~l~~~l 142 (253)
T cd06544 133 ECIGQLITEL 142 (253)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 25
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=40.63 E-value=24 Score=22.64 Aligned_cols=54 Identities=13% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCCCCccHHHHHHHC-Ccchhchhhc----CCCcEEeeCCCHHHHHHHHHHHHhhHhCce
Q psy5103 12 KYRVPPDFKQLAIEY-PEFRKHLHQE----LSGKLKFNFQNPDALRIFTTTLLRKDFGLN 66 (109)
Q Consensus 12 ~y~~~~DF~~La~~~-p~l~~~v~~~----~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~ 66 (109)
.+.+..+|+++-.+. +.|..-+... ..|+ .+.|+|..++.++..++-...|++.
T Consensus 5 ~f~~~~eLk~~L~~~~~~~~~~~~~kl~~YAlGR-~~~~~D~~~i~~i~~~~~~~~y~~~ 63 (76)
T PF07624_consen 5 SFEGAAELKQYLAERKDQFARCFAEKLLTYALGR-PLEFSDRCEIDRIVEAFKANGYRLR 63 (76)
T ss_pred ccCCHHHHHHHHHHCHHHHHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHHHHHcCCCHH
Confidence 355677888666666 6666655432 3476 5889999999999999999998874
No 26
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.22 E-value=55 Score=26.12 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCccHHHHHHHCCcchhchhhcCCC----------cEEeeCCCHHHHHHHHHHHHh--hHhCce
Q psy5103 15 VPPDFKQLAIEYPEFRKHLHQELSG----------KLKFNFQNPDALRIFTTTLLR--KDFGLN 66 (109)
Q Consensus 15 ~~~DF~~La~~~p~l~~~v~~~~~G----------~~~iDF~~~~Av~~LtkaLL~--~dfgL~ 66 (109)
....|++..++ .|++.+..| ..-+||+||+|+.-..+.+-+ .+.|++
T Consensus 93 ~~~~y~e~~~~-----g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 151 (319)
T cd06591 93 ETENYKEMDEK-----GYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVD 151 (319)
T ss_pred CChhHHHHHHC-----CEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCc
Confidence 34567777765 234444443 247999999998866554322 357887
No 27
>PF13708 Methyltransf_27: Methyltransferase domain
Probab=39.29 E-value=39 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCCcEEeeCCCHHHHHHHHHHHHhhH
Q psy5103 37 LSGKLKFNFQNPDALRIFTTTLLRKD 62 (109)
Q Consensus 37 ~~G~~~iDF~~~~Av~~LtkaLL~~d 62 (109)
++|...|-|++|+-+..||..|-+++
T Consensus 165 kkGt~Hi~fk~~dl~~klN~ila~~y 190 (194)
T PF13708_consen 165 KKGTAHITFKRPDLVDKLNRILAKHY 190 (194)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHHc
Confidence 45889999999999999999877654
No 28
>KOG2904|consensus
Probab=39.23 E-value=54 Score=27.28 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=34.8
Q ss_pred HhC-ceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFG-LNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfg-L~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
+|| |++..-++-|+|+ |-=-..+.|+.|.+....-.+.-..+|+||
T Consensus 111 ~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~~~~~~~ildlgt 157 (328)
T KOG2904|consen 111 PFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSEHSKHTHILDLGT 157 (328)
T ss_pred ccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhhhcccceEEEecC
Confidence 454 6777789999998 777889999999987654333346888887
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=37.90 E-value=43 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.345 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCCCCCceEEeecc
Q psy5103 85 ILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 85 i~wi~dLl~~~~~~~~v~glDIGT 108 (109)
..|-+.++....+...-++|||||
T Consensus 31 ~~~~~~~l~~l~~~~~~~vLDiGc 54 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAGTSALDVCC 54 (231)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCC
Confidence 445555555544444457788876
No 30
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.81 E-value=87 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=19.0
Q ss_pred EeeCCCHHHHHHHHHHH--HhhHhCce
Q psy5103 42 KFNFQNPDALRIFTTTL--LRKDFGLN 66 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaL--L~~dfgL~ 66 (109)
.+||+||+|..-..+.+ ...+.|++
T Consensus 134 ~~Dftnp~a~~ww~~~~~~~~~~~Gvd 160 (317)
T cd06599 134 FVDFTNPEGREWWKEGVKEALLDLGID 160 (317)
T ss_pred eecCCChHHHHHHHHHHHHHHhcCCCc
Confidence 69999999998877655 33456886
No 31
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=36.71 E-value=1.2e+02 Score=23.91 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=43.8
Q ss_pred cHH-HHHHHCCcchhchhhcCCCcEEeeC----CCHHHHHHHHHHHHh--hHhCc-----eEEcCCCCcCCCCcchHHHH
Q psy5103 18 DFK-QLAIEYPEFRKHLHQELSGKLKFNF----QNPDALRIFTTTLLR--KDFGL-----NVEIPPMRLVPTLPLRLNYI 85 (109)
Q Consensus 18 DF~-~La~~~p~l~~~v~~~~~G~~~iDF----~~~~Av~~LtkaLL~--~dfgL-----~~~lP~~~LcP~vP~R~nYi 85 (109)
+|. .|.+++|.++-.+.....+..+-.| +|+++.+.+.+.++. +.||+ +|+.|.. -..|.||+
T Consensus 55 ~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~-----~~d~~n~~ 129 (299)
T cd02879 55 TFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSS-----QVEMENFG 129 (299)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCC-----hhHHHHHH
Confidence 454 5677899999877653322111124 467777666665542 23443 3666631 24799999
Q ss_pred HHHHHHHhh
Q psy5103 86 LWIEDLLEA 94 (109)
Q Consensus 86 ~wi~dLl~~ 94 (109)
..|++|-..
T Consensus 130 ~ll~elr~~ 138 (299)
T cd02879 130 KLLEEWRAA 138 (299)
T ss_pred HHHHHHHHH
Confidence 999988654
No 32
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=35.82 E-value=39 Score=27.09 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=37.6
Q ss_pred CCccHHHHHHHCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCceEEcCCCCcCCCCcchHHHHHHHHHHHhh
Q psy5103 15 VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEA 94 (109)
Q Consensus 15 ~~~DF~~La~~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~ 94 (109)
.+||.++|.++.-+ ..+..|+++++...+.+|..+..-. .|+..+.-+-+-+..
T Consensus 48 ~~p~~~~ll~~l~~-------------a~~~~D~e~~~~~~r~lL~~HaST~-------------ERl~~Ld~fY~~if~ 101 (251)
T PF07091_consen 48 GRPDYDALLRKLQE-------------ALDVGDPEAIRAWCRRLLAGHASTR-------------ERLPNLDEFYDEIFG 101 (251)
T ss_dssp S---HHHHHHHHHH-------------HHCTTHHHHHHHHHHHHHHTSHHHH-------------CCGGGHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHh-------------ccCcCCHHHHHHHHHHHHhhccchh-------------hhhhhHHHHHHHHHh
Confidence 55666666555222 3567899999999999998876543 343333333333322
Q ss_pred cCCCCCceEEeeccC
Q psy5103 95 NQISSPITGIDIGRV 109 (109)
Q Consensus 95 ~~~~~~v~glDIGT~ 109 (109)
.++..-+++||||.
T Consensus 102 -~~~~p~sVlDigCG 115 (251)
T PF07091_consen 102 -RIPPPDSVLDIGCG 115 (251)
T ss_dssp -CS---SEEEEET-T
T ss_pred -cCCCCchhhhhhcc
Confidence 13446788999983
No 33
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=35.37 E-value=41 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=13.8
Q ss_pred HHHHHhhcCCCCCceEEeecc
Q psy5103 88 IEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 88 i~dLl~~~~~~~~v~glDIGT 108 (109)
+.+++...+....-++|||||
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGc 38 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGC 38 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcC
Confidence 346665544445578899997
No 34
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=34.92 E-value=57 Score=25.26 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhHhCceEEcCCCCcCCCCcchHHHH------HHHHHHHhhc-CCCCCceEEeeccC
Q psy5103 48 PDALRIFTTTLLRKDFGLNVEIPPMRLVPTLPLRLNYI------LWIEDLLEAN-QISSPITGIDIGRV 109 (109)
Q Consensus 48 ~~Av~~LtkaLL~~dfgL~~~lP~~~LcP~vP~R~nYi------~wi~dLl~~~-~~~~~v~glDIGT~ 109 (109)
|+....+.+ .+++.|+++..+.....+..+.+++..= .|++ +++.. ..+..+.++|.||+
T Consensus 60 p~~~~~l~~-~~~~~~~~~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~-~~aA~~~~~~~~lViD~GTA 126 (243)
T TIGR00671 60 PELTEAVRN-MIPKIKNIKPEIFFPLVYDGLPNLYKSPKELGIDRVAN-ALAAIKFYGFNVVVVDAGTA 126 (243)
T ss_pred CChHHHHHH-HHHHHhCCCcEEECCCccCCcccccCChhhccHHHHHH-HHHHHHHcCCCEEEEEcCCc
Confidence 544445544 4566788874333333444454444332 2333 33332 24567999999996
No 35
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.61 E-value=56 Score=26.48 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=19.1
Q ss_pred EEeeCCCHHHHHHHHHHH--HhhHhCce
Q psy5103 41 LKFNFQNPDALRIFTTTL--LRKDFGLN 66 (109)
Q Consensus 41 ~~iDF~~~~Av~~LtkaL--L~~dfgL~ 66 (109)
.-+||+||+|+.-....+ +..+.|++
T Consensus 152 ~~~Dftnp~a~~Ww~~~~~~~~~~~Gid 179 (340)
T cd06597 152 LMLDFTNPEAAQWWMEKRRYLVDELGID 179 (340)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 469999999998765544 33467887
No 36
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=34.48 E-value=39 Score=29.73 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=27.3
Q ss_pred EEcCCCCcCCCCc-chHHHHHHHHHHHhhcCCCC-CceEEeecc
Q psy5103 67 VEIPPMRLVPTLP-LRLNYILWIEDLLEANQISS-PITGIDIGR 108 (109)
Q Consensus 67 ~~lP~~~LcP~vP-~R~nYi~wi~dLl~~~~~~~-~v~glDIGT 108 (109)
+.+|.|.- -.| |=-.||.-|++++.....+. --+||||||
T Consensus 85 ~~FPgggt--~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGc 126 (506)
T PF03141_consen 85 FRFPGGGT--MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGC 126 (506)
T ss_pred EEeCCCCc--cccCCHHHHHHHHHHHhhccccCCceEEEEeccc
Confidence 56776542 234 55689999999997633233 367899997
No 37
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=33.95 E-value=86 Score=25.13 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEeeCCCHHHHHHHHHHHHh--hHhCce-E
Q psy5103 41 LKFNFQNPDALRIFTTTLLR--KDFGLN-V 67 (109)
Q Consensus 41 ~~iDF~~~~Av~~LtkaLL~--~dfgL~-~ 67 (109)
..+||+||+|+.-..+-+-. .+.|++ |
T Consensus 131 ~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~ 160 (317)
T cd06594 131 GVLDLTNPAARDWFKQVIKEMLLDLGLSGW 160 (317)
T ss_pred eeeecCCHHHHHHHHHHHHHHhhhcCCcEE
Confidence 45999999999877666532 557887 5
No 38
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=32.92 E-value=63 Score=27.76 Aligned_cols=26 Identities=8% Similarity=0.099 Sum_probs=19.3
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHH
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWI 88 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi 88 (109)
.||+++.+-++-|+|+..-=. =+.|+
T Consensus 81 F~g~~f~V~~~VLIPRpeTE~-Lve~~ 106 (506)
T PRK01544 81 FYSREFIVNKHVLIPRSDTEV-LVDVV 106 (506)
T ss_pred EcCcEEEeCCCcccCCCcHHH-HHHHH
Confidence 588999999999999965433 34443
No 39
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=32.88 E-value=27 Score=30.01 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=29.1
Q ss_pred HCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHHHhhHhCceEEcCCC
Q psy5103 25 EYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLNVEIPPM 72 (109)
Q Consensus 25 ~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~~~lP~~ 72 (109)
..|...+=+....+|...|| -...+|.|||+ ++|++|++
T Consensus 330 e~d~~~~ev~~q~dgs~iid--Gs~~iRdlNr~-------l~W~Lp~e 368 (423)
T COG4536 330 EHDTLAKEVIPQSDGSFIID--GSANVRDLNRA-------LDWNLPDE 368 (423)
T ss_pred cCcccchhhcccCCCcEEEe--CCCcHHHHHHh-------cCCCCCCC
Confidence 44555555677788887777 34579999999 69999965
No 40
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=32.59 E-value=68 Score=25.60 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=32.2
Q ss_pred CccHHHHHHHCCc----------------chhchhhcC-CCcEEeeCCCHHHHHHHHHHHHhhHhCce
Q psy5103 16 PPDFKQLAIEYPE----------------FRKHLHQEL-SGKLKFNFQNPDALRIFTTTLLRKDFGLN 66 (109)
Q Consensus 16 ~~DF~~La~~~p~----------------l~~~v~~~~-~G~~~iDF~~~~Av~~LtkaLL~~dfgL~ 66 (109)
..+|..||.+|.+ |.+|++.+. +|+ .+-+++.+...+..+.+++.-+..+
T Consensus 27 ~~~f~~LA~~CAP~V~P~tL~AIa~vESg~nP~AI~~N~~G~-~l~~qs~~EAi~~a~~l~~~g~s~D 93 (245)
T PRK13864 27 FAEFNQLARECAPSVAPSTLAAIAKVESRFDPLAVHDNTTGE-TLHWQNHAQATQSVRHRLEARHSLD 93 (245)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccCCCcceeecCCCC-ccCCCCHHHHHHHHHHHHhcCCcee
Confidence 4567788877755 777775433 354 4567777666777777777644443
No 41
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=32.31 E-value=20 Score=21.78 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=19.1
Q ss_pred HHHHHHHCCcchhchhhcCCCcEEeeCCCHHH
Q psy5103 19 FKQLAIEYPEFRKHLHQELSGKLKFNFQNPDA 50 (109)
Q Consensus 19 F~~La~~~p~l~~~v~~~~~G~~~iDF~~~~A 50 (109)
-.+|.++||++.+++... |= =.+++|..
T Consensus 7 I~el~~~yP~~~~il~~~--gf--~~l~~p~~ 34 (59)
T PF08984_consen 7 IYELLEQYPELIEILVSY--GF--HCLGNPVM 34 (59)
T ss_dssp HHHHHHH-GGGHHHHHHT--TG--GGGGSCCH
T ss_pred HHHHHHHCHHHHHHHHHc--CC--cccCCcHH
Confidence 468999999999998754 51 23566653
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=32.23 E-value=45 Score=27.65 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=21.4
Q ss_pred HhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 62 DFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 62 dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.||.++..+++.+ =.+.+++...++..-++|||||
T Consensus 241 f~g~~~~v~~~v~------------~te~l~~~~~~~~~~~vLDiGc 275 (475)
T PLN02336 241 VFGEGFVSTGGLE------------TTKEFVDKLDLKPGQKVLDVGC 275 (475)
T ss_pred HhCCCCCCCchHH------------HHHHHHHhcCCCCCCEEEEEec
Confidence 3777766665543 2344554444445578999998
No 43
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=30.59 E-value=23 Score=26.79 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=31.7
Q ss_pred ccHHHHHHHCCcchhchhhcCCCcEEeeCCCHHHHHHHHHHH------------HhhHhCceE----EcCCCCcCCCCcc
Q psy5103 17 PDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTL------------LRKDFGLNV----EIPPMRLVPTLPL 80 (109)
Q Consensus 17 ~DF~~La~~~p~l~~~v~~~~~G~~~iDF~~~~Av~~LtkaL------------L~~dfgL~~----~lP~~~LcP~vP~ 80 (109)
-.|.+|-.++.....|+....-+++.+.|.+.++-.. .|.+ |+.+||-.. +....+|-||-+.
T Consensus 10 ~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~-~r~~l~~~~~~~~g~~l~~yf~~~~~~~~~~~~~~L~~P~~~ 88 (184)
T PF04847_consen 10 AELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQR-ARQLLHWDGTSFNGKRLRVYFGQPTPIEDDSEKQYLEPPKPE 88 (184)
T ss_dssp HHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHH-HHHTST--TSEETTEE-EEE----SS------S--S------
T ss_pred HHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHH-HHHHhcccccccCCCceEEEEcccccccccccccccCCCCcc
Confidence 3578888999999999888888999999999654332 2333 344555433 3367788777776
Q ss_pred hH
Q psy5103 81 RL 82 (109)
Q Consensus 81 R~ 82 (109)
|.
T Consensus 89 K~ 90 (184)
T PF04847_consen 89 KQ 90 (184)
T ss_dssp --
T ss_pred ce
Confidence 65
No 44
>PF12563 Hemolysin_N: Hemolytic toxin N terminal; InterPro: IPR022220 This domain family is found in bacteria, and is approximately 190 amino acids in length. The family is found in association with PF07968 from PFAM, PF00652 from PFAM. This family is a bacterial virulence factor - hemolysin - which forms pores in erythrocytes and causes them to lyse. ; PDB: 1XEZ_A 3O44_I.
Probab=30.54 E-value=76 Score=24.52 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=26.0
Q ss_pred CcchhchhhcCCCcEEeeCCCH--HHHHHHHHHHHhhHhCceE
Q psy5103 27 PEFRKHLHQELSGKLKFNFQNP--DALRIFTTTLLRKDFGLNV 67 (109)
Q Consensus 27 p~l~~~v~~~~~G~~~iDF~~~--~Av~~LtkaLL~~dfgL~~ 67 (109)
+.++.-|. +.+-+.-||||.- +.-++-.|+.++.-+|+..
T Consensus 66 ~~ird~Vl-nq~krylvDFS~iede~~k~~aq~~~r~~~G~sF 107 (187)
T PF12563_consen 66 AQIRDDVL-NQNKRYLVDFSQIEDEEEKAQAQAKFRKQYGLSF 107 (187)
T ss_dssp HHHHHHHT-TS--EEEEE-TT--SHHHHHHHHHHHHHHHS-B-
T ss_pred HHHHHHHH-hcCCeEEEEccccCChHHHHHHHHHHHHHhCcCc
Confidence 34455454 4566789999985 4678999999999999964
No 45
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=29.55 E-value=59 Score=24.41 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=14.0
Q ss_pred HHHHHHhhcCCCCCceEEeecc
Q psy5103 87 WIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 87 wi~dLl~~~~~~~~v~glDIGT 108 (109)
+..+++........-++|||||
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGc 40 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGC 40 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcc
Confidence 3455665544445578899997
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=29.19 E-value=69 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=13.7
Q ss_pred HHHHHhhcCCCCCceEEeecc
Q psy5103 88 IEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 88 i~dLl~~~~~~~~v~glDIGT 108 (109)
..+++...++....++|||||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGc 61 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGS 61 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcC
Confidence 344554444556678899997
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=28.95 E-value=1e+02 Score=17.58 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=24.2
Q ss_pred HHHHHCCcchhchhhcCC-CcEEeeCCCHHHHHHHHHHH
Q psy5103 21 QLAIEYPEFRKHLHQELS-GKLKFNFQNPDALRIFTTTL 58 (109)
Q Consensus 21 ~La~~~p~l~~~v~~~~~-G~~~iDF~~~~Av~~LtkaL 58 (109)
++-++|-+........+. |...|.|.+.++.+..=+.|
T Consensus 3 ~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l 41 (56)
T PF13893_consen 3 KLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQL 41 (56)
T ss_dssp HHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHH
T ss_pred HHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHh
Confidence 445566666666655555 88899999987765444443
No 48
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=28.25 E-value=57 Score=22.40 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=21.3
Q ss_pred EeeCCCHHHHHHHHHHHHhhHhCce
Q psy5103 42 KFNFQNPDALRIFTTTLLRKDFGLN 66 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaLL~~dfgL~ 66 (109)
.+..++++..+++.++|-..+||+=
T Consensus 25 v~~~~~~e~~~~~~~~l~~~~~gII 49 (104)
T PRK01189 25 TIEAEGKDLVKKFLEIFNNPKCKYI 49 (104)
T ss_pred EEEcCCHHHHHHHHHHHhcCCeEEE
Confidence 4567888888999999999999985
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=27.95 E-value=77 Score=23.64 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 83 NYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 83 nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
.++.++...+.. +...-++|||||
T Consensus 29 ~~~~~~~~~l~~--~~~~~~VLDiGC 52 (204)
T TIGR03587 29 AKLAMFARALNR--LPKIASILELGA 52 (204)
T ss_pred HHHHHHHHHHHh--cCCCCcEEEEec
Confidence 345555555544 233456888887
No 50
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=27.59 E-value=31 Score=25.60 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=18.0
Q ss_pred cchhchhhcCCCcEEeeCCCHH
Q psy5103 28 EFRKHLHQELSGKLKFNFQNPD 49 (109)
Q Consensus 28 ~l~~~v~~~~~G~~~iDF~~~~ 49 (109)
++.+|...+.+|+..|||+..+
T Consensus 14 p~qPYAYi~~nG~L~IDiS~nN 35 (146)
T PF06510_consen 14 PLQPYAYINDNGKLVIDISPNN 35 (146)
T ss_pred cCCCeEEEecCCeEEEEecCCC
Confidence 5678887788999999998743
No 51
>PLN02244 tocopherol O-methyltransferase
Probab=27.31 E-value=1e+02 Score=24.82 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCcchHHHHHHHHHHHhhcCC-----CCCceEEeecc
Q psy5103 77 TLPLRLNYILWIEDLLEANQI-----SSPITGIDIGR 108 (109)
Q Consensus 77 ~vP~R~nYi~wi~dLl~~~~~-----~~~v~glDIGT 108 (109)
+...+..=+..++.++...++ ...-++|||||
T Consensus 91 ~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGC 127 (340)
T PLN02244 91 RGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGC 127 (340)
T ss_pred cccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecC
Confidence 444555556677777776654 34568999998
No 52
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=27.24 E-value=1.1e+02 Score=22.30 Aligned_cols=24 Identities=17% Similarity=0.010 Sum_probs=12.6
Q ss_pred HHHHHHHHhhcCCCCCceEEeecc
Q psy5103 85 ILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 85 i~wi~dLl~~~~~~~~v~glDIGT 108 (109)
+.++.+.+...+....-++|||||
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGc 72 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGC 72 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeC
Confidence 334444444322223457888887
No 53
>PRK13322 pantothenate kinase; Reviewed
Probab=26.95 E-value=2e+02 Score=22.32 Aligned_cols=62 Identities=16% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhHhCce-EEcCCCCcCCCCcchHHHHHH-----HHHHHhhc-CCCCCceEEeeccC
Q psy5103 48 PDALRIFTTTLLRKDFGLN-VEIPPMRLVPTLPLRLNYILW-----IEDLLEAN-QISSPITGIDIGRV 109 (109)
Q Consensus 48 ~~Av~~LtkaLL~~dfgL~-~~lP~~~LcP~vP~R~nYi~w-----i~dLl~~~-~~~~~v~glDIGT~ 109 (109)
|+++...-++.|++.|++. +.+..+.=++.+.+.+..-.. +..++... ..+..+.++|.||+
T Consensus 58 p~~~~~~l~~~l~~~~~~~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~~~~lViD~GTA 126 (246)
T PRK13322 58 SEEETARLVAILEKRLGIPVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAKNACLVIDCGTA 126 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCe
Confidence 5455555556667789987 466555555566555433222 22333332 23556889999996
No 54
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=26.67 E-value=60 Score=20.58 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.4
Q ss_pred EeeCCCHHHHHHHHHHH
Q psy5103 42 KFNFQNPDALRIFTTTL 58 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaL 58 (109)
.+||.+++|++.+.+.|
T Consensus 24 ~~~~~~~e~~~~f~~~L 40 (69)
T TIGR03595 24 KTPFNNDENLRRFARKL 40 (69)
T ss_pred HcCCCCHHHHHHHHHHH
Confidence 47999999999887764
No 55
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.47 E-value=98 Score=24.50 Aligned_cols=26 Identities=31% Similarity=0.761 Sum_probs=20.0
Q ss_pred EEeeCCCHHHHHHHHHHH--HhhHhCce
Q psy5103 41 LKFNFQNPDALRIFTTTL--LRKDFGLN 66 (109)
Q Consensus 41 ~~iDF~~~~Av~~LtkaL--L~~dfgL~ 66 (109)
..+||+||+|..-+.+.+ +..+.|++
T Consensus 130 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 157 (303)
T cd06592 130 AVLDFTNPEAVDWFLSRLKSLQEKYGID 157 (303)
T ss_pred ceEeCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 469999999998887655 34467887
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=26.16 E-value=1e+02 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=15.0
Q ss_pred cchhchhhcCC-CcEEeeCCC-HHHHHHHHH
Q psy5103 28 EFRKHLHQELS-GKLKFNFQN-PDALRIFTT 56 (109)
Q Consensus 28 ~l~~~v~~~~~-G~~~iDF~~-~~Av~~Ltk 56 (109)
+++.|+..+.+ --++|||+. +.+-..||+
T Consensus 93 ~~~~~i~~~~~~p~~~~~~~~~~~~~~l~tr 123 (404)
T TIGR03286 93 EVRRYIQENTNLPVVSYSFTERTTAGELLTR 123 (404)
T ss_pred HHHHHHHhcCCCCEEEEecccCCchhHHHHH
Confidence 45566654333 124567766 555555554
No 57
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=25.45 E-value=1.6e+02 Score=22.29 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHH--hhHhCce-----EEcCCCCcCCCCcchHHHHHHHHHHHhhc
Q psy5103 46 QNPDALRIFTTTLL--RKDFGLN-----VEIPPMRLVPTLPLRLNYILWIEDLLEAN 95 (109)
Q Consensus 46 ~~~~Av~~LtkaLL--~~dfgL~-----~~lP~~~LcP~vP~R~nYi~wi~dLl~~~ 95 (109)
+|+++...+.+.+. .+.||++ |+-|.. . |.+|...+++|-...
T Consensus 79 ~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~------~-~~~~~~fv~~Lr~~l 128 (253)
T cd06545 79 NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV------T-FGDYLVFIRALYAAL 128 (253)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc------c-HhHHHHHHHHHHHHH
Confidence 46666665655554 2345443 444532 1 889999998887653
No 58
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=57 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCCCCCceEEeecc
Q psy5103 85 ILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 85 i~wi~dLl~~~~~~~~v~glDIGT 108 (109)
+.|+++++. +.-++||+||
T Consensus 153 L~~Le~~~~-----~g~~vlDvGc 171 (300)
T COG2264 153 LEALEKLLK-----KGKTVLDVGC 171 (300)
T ss_pred HHHHHHhhc-----CCCEEEEecC
Confidence 677777775 3477888887
No 59
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=24.76 E-value=84 Score=25.32 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=25.6
Q ss_pred CccHHHHHHHCCcchhchhh----cCCCcEEeeCCCHHHHH
Q psy5103 16 PPDFKQLAIEYPEFRKHLHQ----ELSGKLKFNFQNPDALR 52 (109)
Q Consensus 16 ~~DF~~La~~~p~l~~~v~~----~~~G~~~iDF~~~~Av~ 52 (109)
...|+.|++.||.+.+|+.. +++|+ |+|+---+
T Consensus 165 ~l~~~~l~~lYPr~~dFlavR~~lDP~G~----F~N~yl~r 201 (257)
T PLN00107 165 NAAFDGAIAKYKKAGEFLKVKERLDPEGL----FSSEWSDK 201 (257)
T ss_pred CCCHHHHHHHCcCHHHHHHHHHHhCCCCc----cCCHHHHH
Confidence 46899999999999999854 66674 88865433
No 60
>PF14330 DUF4387: Domain of unknown function (DUF4387)
Probab=24.61 E-value=72 Score=22.17 Aligned_cols=38 Identities=24% Similarity=0.627 Sum_probs=26.1
Q ss_pred chhchhhcCCC--cEEee--CCCHHHHH------HHHHHHHhhHhCce
Q psy5103 29 FRKHLHQELSG--KLKFN--FQNPDALR------IFTTTLLRKDFGLN 66 (109)
Q Consensus 29 l~~~v~~~~~G--~~~iD--F~~~~Av~------~LtkaLL~~dfgL~ 66 (109)
+.+.+..++.| ..|+| |+++++-. .||+.+..+-||++
T Consensus 4 la~vIRSKNAGPf~lT~DI~F~~~e~Y~~vk~s~~l~~~~ia~Ly~i~ 51 (99)
T PF14330_consen 4 LAKVIRSKNAGPFELTFDIIFKDKEAYERVKASGVLTPELIARLYGID 51 (99)
T ss_pred HHHHHhccCCCCcEEEEEEEECCHHHHHHHHHcCccCHHHHHHHHCCC
Confidence 44555544446 46777 88877653 48999999999974
No 61
>PRK14967 putative methyltransferase; Provisional
Probab=24.49 E-value=1.6e+02 Score=21.81 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=18.6
Q ss_pred CceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 64 GLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 64 gL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
++.+.-+++-..|..-.++ +.+.+...++....++||+||
T Consensus 6 ~~~~~~~~g~~~p~~ds~~-----l~~~l~~~~~~~~~~vLDlGc 45 (223)
T PRK14967 6 PDALLRAPGVYRPQEDTQL-----LADALAAEGLGPGRRVLDLCT 45 (223)
T ss_pred CceeecCCCCcCCCCcHHH-----HHHHHHhcccCCCCeEEEecC
Confidence 3444555555555543322 223333323333456777776
No 62
>KOG4513|consensus
Probab=24.49 E-value=93 Score=27.16 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=39.5
Q ss_pred CcchhchhhcCCCcE-----EeeCCC--HHHHHHHHHHHHhhHhC---------ce--------EEc-CCCCcC-CCCcc
Q psy5103 27 PEFRKHLHQELSGKL-----KFNFQN--PDALRIFTTTLLRKDFG---------LN--------VEI-PPMRLV-PTLPL 80 (109)
Q Consensus 27 p~l~~~v~~~~~G~~-----~iDF~~--~~Av~~LtkaLL~~dfg---------L~--------~~l-P~~~Lc-P~vP~ 80 (109)
..|++|++..++|++ +|-|-| .+-.++.++||=+.+|+ |. =++ |..+|+ ||--+
T Consensus 248 e~L~p~vi~ge~Gr~~~~DdtiifFnfRADRMr~ia~a~~~~~~d~~~r~~~p~i~~~gMtqYk~el~psk~Lf~pp~i~ 327 (531)
T KOG4513|consen 248 EYLPPFVIVGERGRAVGPDDTIIFFNFRADRMRMIAKALEYNDFDKFDRVRHPNIRYAGMTQYKGELKPSKYLFSPPCID 327 (531)
T ss_pred cccCCeEEECCCCcccCCCCeEEEEecchHHHHHHHHHhccccccccccccCCcceEeehhhhccccCcceeeecccccc
Confidence 358899998877753 333444 34567999999999992 21 255 889999 88888
Q ss_pred h
Q psy5103 81 R 81 (109)
Q Consensus 81 R 81 (109)
|
T Consensus 328 ~ 328 (531)
T KOG4513|consen 328 R 328 (531)
T ss_pred c
Confidence 8
No 63
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=24.24 E-value=87 Score=25.28 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=17.5
Q ss_pred EEeeCCCHHHHHHHHHHHHhh
Q psy5103 41 LKFNFQNPDALRIFTTTLLRK 61 (109)
Q Consensus 41 ~~iDF~~~~Av~~LtkaLL~~ 61 (109)
+-|||+.|+++.+..+..+++
T Consensus 72 VvIDFT~P~~~~~n~~~~~~~ 92 (275)
T TIGR02130 72 ICIDYTHPSAVNDNAAFYGKH 92 (275)
T ss_pred EEEECCChHHHHHHHHHHHHC
Confidence 679999999999987776654
No 64
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=24.00 E-value=1.3e+02 Score=23.09 Aligned_cols=74 Identities=26% Similarity=0.371 Sum_probs=45.7
Q ss_pred HHHHHHHCCc--chhchhhcCCCc-EEeeCCCHHHHHH-HHHHHHhhHhCce-EEc----C-CCCcCCCCcchHHHHHHH
Q psy5103 19 FKQLAIEYPE--FRKHLHQELSGK-LKFNFQNPDALRI-FTTTLLRKDFGLN-VEI----P-PMRLVPTLPLRLNYILWI 88 (109)
Q Consensus 19 F~~La~~~p~--l~~~v~~~~~G~-~~iDF~~~~Av~~-LtkaLL~~dfgL~-~~l----P-~~~LcP~vP~R~nYi~wi 88 (109)
+..+++.+|+ +.+.+.. .|. ..+++.+|..... ....+++++||++ =++ - .+..+ .-.+.++=|.++
T Consensus 49 lHD~aK~~p~~~~~~~~~~--~~~~~~~~~~~~~llH~~vgay~~~~~fGi~De~VL~AI~~HTtg~-~~mt~ldkIiyi 125 (187)
T COG1713 49 LHDIAKELPEQKLLKIAKK--YGLELDLERESPLLLHGKVGAYLLKEEFGIKDEEVLSAIEYHTTGR-KQMTLLDKILYV 125 (187)
T ss_pred HHHHHhhCCHHHHHHHHHH--hCCCchhhccChHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhccCC-Cccchhhheeee
Confidence 3567778885 5555543 332 2356888888865 5677899999995 111 0 11122 335677778888
Q ss_pred HHHHhhc
Q psy5103 89 EDLLEAN 95 (109)
Q Consensus 89 ~dLl~~~ 95 (109)
+|-++..
T Consensus 126 AD~iEp~ 132 (187)
T COG1713 126 ADKIEPG 132 (187)
T ss_pred eccccCC
Confidence 8877664
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=78 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=11.6
Q ss_pred hhcCCCCCceEEeecc
Q psy5103 93 EANQISSPITGIDIGR 108 (109)
Q Consensus 93 ~~~~~~~~v~glDIGT 108 (109)
+..++...-++|||||
T Consensus 66 ~kl~L~~G~~lLDiGC 81 (283)
T COG2230 66 EKLGLKPGMTLLDIGC 81 (283)
T ss_pred HhcCCCCCCEEEEeCC
Confidence 3335566788999998
No 66
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.78 E-value=2e+02 Score=22.62 Aligned_cols=74 Identities=11% Similarity=0.000 Sum_probs=41.1
Q ss_pred HHHHHHHCCcchhc--hhhcCCCc--EEeeCCCHHHHHHHHHHHH--hhHhCce-E-----EcCCCCcCCCCcchHHHHH
Q psy5103 19 FKQLAIEYPEFRKH--LHQELSGK--LKFNFQNPDALRIFTTTLL--RKDFGLN-V-----EIPPMRLVPTLPLRLNYIL 86 (109)
Q Consensus 19 F~~La~~~p~l~~~--v~~~~~G~--~~iDF~~~~Av~~LtkaLL--~~dfgL~-~-----~lP~~~LcP~vP~R~nYi~ 86 (109)
+.+|.+++|.++-. +.....+. .+-=.+|+++.+.+.+.++ .+.||++ + +.|... .. ...|.+|+.
T Consensus 57 ~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~-~~-~~d~~~~~~ 134 (318)
T cd02876 57 IEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAY-GV-PDKRKELIQ 134 (318)
T ss_pred HHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhccc-CC-HHHHHHHHH
Confidence 46788888888877 33211110 0001245666666666654 3455444 3 344321 00 137999999
Q ss_pred HHHHHHhh
Q psy5103 87 WIEDLLEA 94 (109)
Q Consensus 87 wi~dLl~~ 94 (109)
.|++|-..
T Consensus 135 ~l~el~~~ 142 (318)
T cd02876 135 LVIHLGET 142 (318)
T ss_pred HHHHHHHH
Confidence 99998755
No 67
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=23.30 E-value=62 Score=25.44 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcCC-CCCceEEeecc
Q psy5103 85 ILWIEDLLEANQI-SSPITGIDIGR 108 (109)
Q Consensus 85 i~wi~dLl~~~~~-~~~v~glDIGT 108 (109)
+.||.++...... ..+++.||||.
T Consensus 36 v~wL~~~~~~~~~~~~~lrlLEVGa 60 (219)
T PF11968_consen 36 VEWLKELGVRPKNGRPKLRLLEVGA 60 (219)
T ss_pred HHHhhhhccccccccccceEEeecc
Confidence 5677766654332 34699999996
No 68
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=23.27 E-value=1.1e+02 Score=22.93 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhcC-CCC-CceEEeecc
Q psy5103 84 YILWIEDLLEANQ-ISS-PITGIDIGR 108 (109)
Q Consensus 84 Yi~wi~dLl~~~~-~~~-~v~glDIGT 108 (109)
+..++.|-|.... ++. ..+++||||
T Consensus 31 ~~~Hi~DSL~~~~~~~~~~~~~lDiGS 57 (184)
T PF02527_consen 31 WERHILDSLALLPFLPDFGKKVLDIGS 57 (184)
T ss_dssp HHHHHHHHHGGGGCS-CCCSEEEEETS
T ss_pred HHHHHHHHHHhhhhhccCCceEEecCC
Confidence 3456666665543 222 227999998
No 69
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=23.25 E-value=65 Score=26.18 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=24.3
Q ss_pred eEEcCCCCcCC---CCcchHHHHHHHH-HHHhhcC----CCCCceEEeecc
Q psy5103 66 NVEIPPMRLVP---TLPLRLNYILWIE-DLLEANQ----ISSPITGIDIGR 108 (109)
Q Consensus 66 ~~~lP~~~LcP---~vP~R~nYi~wi~-dLl~~~~----~~~~v~glDIGT 108 (109)
+|+-+.+.+-| .=|.|..||.... ..+..+. ....-++|||||
T Consensus 90 ~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGC 140 (322)
T PLN02396 90 TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGC 140 (322)
T ss_pred HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeC
Confidence 47776665443 5567888875432 2222111 123468999998
No 70
>KOG0942|consensus
Probab=23.07 E-value=30 Score=32.68 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=48.1
Q ss_pred ccHHHHHHHCCcchhchhh--cCCCcEEeeCCCHHHHHHHHHHHHhhHhCce--EEc-CCCCcCC-CCcchHHHHHHHHH
Q psy5103 17 PDFKQLAIEYPEFRKHLHQ--ELSGKLKFNFQNPDALRIFTTTLLRKDFGLN--VEI-PPMRLVP-TLPLRLNYILWIED 90 (109)
Q Consensus 17 ~DF~~La~~~p~l~~~v~~--~~~G~~~iDF~~~~Av~~LtkaLL~~dfgL~--~~l-P~~~LcP-~vP~R~nYi~wi~d 90 (109)
+||..|+.-.|+|-++++. +-+|. ...-.+|+=+....++|.. +++ |-|.=.| |.-||..|||-+.|
T Consensus 771 vd~~dL~SlDPeLY~nLifLk~y~gd-------di~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsn 843 (1001)
T KOG0942|consen 771 VDLHDLASLDPELYKNLIFLKNYNGD-------DISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSN 843 (1001)
T ss_pred CChhhhcccCHHHHHHHHHHHhcCCC-------chhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhh
Confidence 8999999999999998863 33341 2233344455677789884 666 5555554 66799999998876
Q ss_pred H
Q psy5103 91 L 91 (109)
Q Consensus 91 L 91 (109)
-
T Consensus 844 Y 844 (1001)
T KOG0942|consen 844 Y 844 (1001)
T ss_pred h
Confidence 4
No 71
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=23.06 E-value=1.2e+02 Score=22.24 Aligned_cols=8 Identities=50% Similarity=0.576 Sum_probs=5.0
Q ss_pred ceEEeecc
Q psy5103 101 ITGIDIGR 108 (109)
Q Consensus 101 v~glDIGT 108 (109)
-++|||||
T Consensus 44 ~~vLDiGc 51 (181)
T TIGR00138 44 KKVIDIGS 51 (181)
T ss_pred CeEEEecC
Confidence 45666665
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=23.05 E-value=70 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=9.1
Q ss_pred HhhcCCCCCceEEeecc
Q psy5103 92 LEANQISSPITGIDIGR 108 (109)
Q Consensus 92 l~~~~~~~~v~glDIGT 108 (109)
++..++...-++|||||
T Consensus 55 ~~~~~l~~G~~vLDiGc 71 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGC 71 (273)
T ss_dssp HTTTT--TT-EEEEES-
T ss_pred HHHhCCCCCCEEEEeCC
Confidence 33335556679999998
No 73
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=22.55 E-value=1.3e+02 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.295 Sum_probs=18.2
Q ss_pred EeeCCCHHHHHHHHHHHH--hhHhCce-EEc
Q psy5103 42 KFNFQNPDALRIFTTTLL--RKDFGLN-VEI 69 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaLL--~~dfgL~-~~l 69 (109)
-+||+||+|+.-....+- ..+.|++ |.+
T Consensus 131 ~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~ 161 (339)
T cd06602 131 FPDFLNPNTQEWWTDEIKDFHDQVPFDGLWI 161 (339)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCCcEEEe
Confidence 489999999886643331 2346887 533
No 74
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=22.33 E-value=1.1e+02 Score=18.74 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=38.5
Q ss_pred EeeCCCHHHHHHHHHHHHhhHhCce-EEcCC------CCcCCCCcchHHHHHHHHHHHhhcCCCCCceEEeec
Q psy5103 42 KFNFQNPDALRIFTTTLLRKDFGLN-VEIPP------MRLVPTLPLRLNYILWIEDLLEANQISSPITGIDIG 107 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaLL~~dfgL~-~~lP~------~~LcP~vP~R~nYi~wi~dLl~~~~~~~~v~glDIG 107 (109)
+|.-++.+-+..|.+-- ...+++ |.-|. +-++|| .++..+.++|...+++-.|.+=|++
T Consensus 2 rv~p~t~~q~~~L~~L~--~~~~~dfW~~~~~~~~~~dv~V~p-----~~~~~f~~~L~~~~i~~~v~i~dvq 67 (74)
T PF02244_consen 2 RVTPKTEEQLELLQELE--QSNELDFWKEPSSVGRPVDVMVPP-----EKLEEFEELLKEHGIEYEVLIEDVQ 67 (74)
T ss_dssp EEEESSHHHHHHHHHHH--HHSTEEEEESSSSTTSEEEEEEEG-----GGHHHHHHHHHHTT-EEEEEES-HH
T ss_pred EEEeCCHHHHHHHHHHh--cccceeeecCCCCCCCeEEEEECH-----HHHHHHHHHHHHCCCcEEEEeHHHH
Confidence 34557777777777655 888998 77776 234554 5677888888887765555554444
No 75
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=21.83 E-value=1.2e+02 Score=24.21 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=16.7
Q ss_pred EeeCCCHHHHHHHHHHHHhh--HhCce
Q psy5103 42 KFNFQNPDALRIFTTTLLRK--DFGLN 66 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaLL~~--dfgL~ 66 (109)
-+||+||+|+.-..+ .+++ +.|++
T Consensus 126 ~~Dftnp~a~~ww~~-~~~~~~~~Gvd 151 (339)
T cd06604 126 FPDFTNPKVREWWGS-LYKKFVDLGVD 151 (339)
T ss_pred ccCCCChHHHHHHHH-HHHHHhhCCCc
Confidence 379999999986644 3444 45776
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=21.60 E-value=1.1e+02 Score=22.48 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=8.3
Q ss_pred CCCceEEeecc
Q psy5103 98 SSPITGIDIGR 108 (109)
Q Consensus 98 ~~~v~glDIGT 108 (109)
...-++|||||
T Consensus 71 ~~~~~VLDiG~ 81 (205)
T PRK13944 71 RPGMKILEVGT 81 (205)
T ss_pred CCCCEEEEECc
Confidence 34468999997
No 77
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=21.45 E-value=91 Score=22.77 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=16.4
Q ss_pred eeCCCHHHHHHHHHHHHh
Q psy5103 43 FNFQNPDALRIFTTTLLR 60 (109)
Q Consensus 43 iDF~~~~Av~~LtkaLL~ 60 (109)
+||.|++||++..+.+.+
T Consensus 155 ~~~~dw~~v~~fa~~~~~ 172 (177)
T PRK11104 155 VEYTDWEQVANFAREFAQ 172 (177)
T ss_pred eeeCCHHHHHHHHHHHHh
Confidence 899999999999998765
No 78
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.34 E-value=74 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcCCCCCceEEee
Q psy5103 85 ILWIEDLLEANQISSPITGIDI 106 (109)
Q Consensus 85 i~wi~dLl~~~~~~~~v~glDI 106 (109)
+.|.++++...+...+|.|+||
T Consensus 47 li~~A~ml~~~~~~~~VigiDI 68 (206)
T PF04989_consen 47 LIFWASMLELLGGKGKVIGIDI 68 (206)
T ss_dssp HHHHHHHHHHTT---EEEEEES
T ss_pred HHHHHHHHHHhCCCceEEEEeC
Confidence 4588888887666678999998
No 79
>KOG0907|consensus
Probab=21.25 E-value=44 Score=22.82 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.2
Q ss_pred ccHHHHHHHCCcchhchhh
Q psy5103 17 PDFKQLAIEYPEFRKHLHQ 35 (109)
Q Consensus 17 ~DF~~La~~~p~l~~~v~~ 35 (109)
|-|.+||.+||+ ..|+..
T Consensus 41 P~~~~La~~y~~-v~Flkv 58 (106)
T KOG0907|consen 41 PKFEKLAEKYPD-VVFLKV 58 (106)
T ss_pred hHHHHHHHHCCC-CEEEEE
Confidence 579999999999 888743
No 80
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=21.04 E-value=1.2e+02 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCC-CCCceEEeecc
Q psy5103 85 ILWIEDLLEANQI-SSPITGIDIGR 108 (109)
Q Consensus 85 i~wi~dLl~~~~~-~~~v~glDIGT 108 (109)
+.||.+.+..... ....++|||||
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~ 54 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGC 54 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECC
Confidence 5788888865321 13467899987
No 81
>PF04362 Iron_traffic: Bacterial Fe(2+) trafficking; InterPro: IPR007457 The protein represented by this entry, YggX, serves to protect Fe-S clusters from oxidative damage []. The effect is two-fold: proteins that rely on Fe-S clusters do not become inactivated, and the release of free iron and hydrogen peroxide--a DNA damaging agent--is prevented. These observations are consistent with the hypothesis that YggX chelates free iron, and recent experiments show that YggX can indeed bind Fe(II) in vitro and in vivo []. Furthermore, YggX has a positive effect on the action of at least one Fe(II)-responsive protein. The combined actions of YggX is reminiscent of iron trafficking proteins [], and YggX is therefore proposed to play a role in Fe(II) trafficking []. In Escherichia coli, YggX was shown to be under the transcriptional control of the redox-sensing SoxRS system []. ; GO: 0005506 iron ion binding; PDB: 1YHD_A 1T07_A 1XS8_A.
Probab=21.03 E-value=74 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=24.8
Q ss_pred EeeCCCHHHHHHHHHHHHhhHhCceEEcCCCCc
Q psy5103 42 KFNFQNPDALRIFTTTLLRKDFGLNVEIPPMRL 74 (109)
Q Consensus 42 ~iDF~~~~Av~~LtkaLL~~dfgL~~~lP~~~L 74 (109)
++|..|++|...|.+..-+--||=.-+.|+|+.
T Consensus 54 rLn~~dp~~R~~L~~qM~~Flf~~~~~~~~gyv 86 (88)
T PF04362_consen 54 RLNMMDPEARKFLEEQMEKFLFGEGQDKPEGYV 86 (88)
T ss_dssp T--TTSHHHHHHHHHHHHHHTTTTTSS---SS-
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 489999999999999999999998888888874
No 82
>PLN02775 Probable dihydrodipicolinate reductase
Probab=20.76 E-value=1.1e+02 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.1
Q ss_pred EEeeCCCHHHHHHHHHHHHhh
Q psy5103 41 LKFNFQNPDALRIFTTTLLRK 61 (109)
Q Consensus 41 ~~iDF~~~~Av~~LtkaLL~~ 61 (109)
+-|||+.|+++....+..+++
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~ 103 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKN 103 (286)
T ss_pred EEEECCChHHHHHHHHHHHHC
Confidence 579999999999988877765
No 83
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.71 E-value=98 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.3
Q ss_pred cEEeeCCCHHHHHHHHHHHHhhHhCc
Q psy5103 40 KLKFNFQNPDALRIFTTTLLRKDFGL 65 (109)
Q Consensus 40 ~~~iDF~~~~Av~~LtkaLL~~dfgL 65 (109)
.+-|||+.|+++.++.+..+++-..+
T Consensus 71 DV~IDFT~P~~~~~~l~~~~~~~~~l 96 (266)
T COG0289 71 DVLIDFTTPEATLENLEFALEHGKPL 96 (266)
T ss_pred CEEEECCCchhhHHHHHHHHHcCCCe
Confidence 46899999999999999888765443
No 84
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=20.68 E-value=1.6e+02 Score=22.32 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=18.8
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCceEEeecc
Q psy5103 78 LPLRLNYILWIEDLLEANQISSPITGIDIGR 108 (109)
Q Consensus 78 vP~R~nYi~wi~dLl~~~~~~~~v~glDIGT 108 (109)
||+.-....-+..++... ....-++|||||
T Consensus 36 ~p~y~~~~~~~~~~~~~~-~~~~~~vLDlGc 65 (247)
T PRK15451 36 VPGYSNIISMIGMLAERF-VQPGTQVYDLGC 65 (247)
T ss_pred CCChHHHHHHHHHHHHHh-CCCCCEEEEEcc
Confidence 677776666666555432 233467899987
No 85
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=20.66 E-value=1.6e+02 Score=23.53 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=34.2
Q ss_pred hHhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcCCC--CCceEEeeccC
Q psy5103 61 KDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQIS--SPITGIDIGRV 109 (109)
Q Consensus 61 ~dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~~~--~~v~glDIGT~ 109 (109)
+||- .+.++. .||-=..+. -+..|.+.+...+++ ..+.+-|||+.
T Consensus 9 ~~~~--~~~~~~-~CpGCg~~~-il~~l~~al~~l~~~p~d~vvvsdiGc~ 55 (286)
T PRK11867 9 KDFR--NDQEPR-WCPGCGDGS-ILAALQRALAELGLDPENVAVVSGIGCS 55 (286)
T ss_pred HHhc--CCCCCC-cCCCCCCHH-HHHHHHHHHHHhCCCCCcEEEEeCCccc
Confidence 3554 465555 999999998 888999999776653 34889999973
No 86
>PF13979 SopA_C: SopA-like catalytic domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=20.50 E-value=1.7e+02 Score=22.25 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=34.4
Q ss_pred eeCCCHHHHHHHHHHHHhhHhCceEEcCCCCcCCCCcchHHHHHHHHHHHhhcC
Q psy5103 43 FNFQNPDALRIFTTTLLRKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQ 96 (109)
Q Consensus 43 iDF~~~~Av~~LtkaLL~~dfgL~~~lP~~~LcP~vP~R~nYi~wi~dLl~~~~ 96 (109)
....+|+++|.++.|||..-+.| .|.|-..-.+=.|...|++..+
T Consensus 95 tE~dSP~~LR~YA~ALl~kA~eL---------dP~i~s~~~~~~w~~rLlg~~~ 139 (172)
T PF13979_consen 95 TEYDSPKPLRRYANALLEKAYEL---------DPSIFSSQTFDDWKNRLLGLNN 139 (172)
T ss_dssp BSSC--HHHHHHHHHHHHHHHHH----------GGGCSHHHHHHHHHHHCTTTC
T ss_pred CCCCChHHHHHHHHHHHHHHHHh---------CcchhhHHHHHHHHHHHcCCCC
Confidence 35789999999999999998865 5666667888999999996543
Done!