RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5103
(109 letters)
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 58.7 bits (141), Expect = 2e-12
Identities = 37/69 (53%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 41 LKFNFQNPDALRIFTTTLLRKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEA--NQIS 98
+ NF++P+A+R T TLLR+DFGL+++IP RL+PT+PLRLNYI W+EDL+ + S
Sbjct: 1 VSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKS 60
Query: 99 SPITGIDIG 107
+ GIDIG
Sbjct: 61 TLRRGIDIG 69
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 25.2 bits (54), Expect = 1.7
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 18 DFKQLAIEYPEFRKHLHQELSGKLKFNFQ 46
F+QL P+ L +++ +L+ +
Sbjct: 96 KFRQLIQVNPDILMRLSAQMARRLQVTSE 124
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein
transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.2 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 23 AIEYP--EFRKHLHQELSGKLKFNFQNPDAL 51
A E P ++ +L+Q G+L NF P L
Sbjct: 199 ACEIPRRDYLNYLNQMRLGRLPNNFWVPRCL 229
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 25.1 bits (54), Expect = 2.3
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 78 LPLRL-NYILWIEDLLEANQISSPITGIDIG 107
LP + +Y+ ++E+ + + + +G
Sbjct: 395 LPPQAQSYVRFVENHMGV-----AVKWVGVG 420
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 24.9 bits (54), Expect = 2.3
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 13 YRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLNVEIPPM 72
Y +P DF + + + K + +A T L R
Sbjct: 121 YGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGGTHTADLSRFPITARTTAIKG 180
Query: 73 RLVPT---------------LPLRLNYILWIEDLLEA 94
R + L + + + ED +E
Sbjct: 181 RFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVEL 217
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 24.8 bits (53), Expect = 2.3
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 18 DFKQLAIEYPEFRKHLHQELSGKLK 42
F++L+ + E L +++ +L+
Sbjct: 98 KFRELSQQDSEILYTLGSQMADRLR 122
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 24.6 bits (52), Expect = 3.2
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 18 DFKQLAIEYPEFRKHLHQELSGKLK 42
+F ++ EYP R+ +L
Sbjct: 168 NFNEVLEEYPMMRRAFETVAIDRLD 192
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 24.6 bits (53), Expect = 3.2
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 83 NYILWIEDLLEANQISSPITGIDIG 107
YIL IE L+ PI I +G
Sbjct: 395 KYILAIEKYLKT-----PIVWIGVG 414
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 24.4 bits (52), Expect = 3.3
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 18 DFKQLAIEYPEFRKHLHQELSGKLK 42
+ L F ++ + L+ +L
Sbjct: 106 AIEALLKGNTSFCRYFLKALAKELG 130
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 24.7 bits (53), Expect = 3.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 78 LPLRL-NYILWIEDLLEANQISSPITGIDIG 107
LP Y+ IE+L+ PI I IG
Sbjct: 395 LPKAAQQYVERIEELVGV-----PIHYIGIG 420
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 24.2 bits (52), Expect = 4.0
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 83 NYILWIEDLLEANQISSPITGIDIG 107
NYI IE+L PI I G
Sbjct: 397 NYIKRIEELTGV-----PIDIISTG 416
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium thermocellum [TaxId: 1515]}
Length = 642
Score = 24.0 bits (52), Expect = 5.1
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 4 NKFMHPRNKYRVPPDFKQLAIEY-----PEFRKH 32
KF+ R KYR P + + Y P H
Sbjct: 582 IKFIDIRTKYRQDPYYDIVYQAYLRGEAPVLNYH 615
>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium cellulolyticum [TaxId: 1521]}
Length = 629
Score = 24.0 bits (52), Expect = 5.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 4 NKFMHPRNKYRVPPDFKQLAIEY-----PEFRKH 32
KF+ R+KY+ P+++ + P R H
Sbjct: 575 VKFIDIRSKYKQDPEWQTMVAALQAGQVPTQRLH 608
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 23.5 bits (50), Expect = 6.1
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 11 NKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTLLRKDFGLNVEIP 70
++ + D + P L +L G+ + A + KDF + ++
Sbjct: 95 DELDITGDLTLNGVTKPV---TLEAKLIGQGDDPWGGKRAGFEAEGKIKLKDFNIKTDLG 151
Query: 71 PM 72
P
Sbjct: 152 PA 153
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 23.4 bits (50), Expect = 7.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 19 FKQLAIEYPEFRKHLHQEL 37
F L +PE K L ++
Sbjct: 349 FAVLDRSFPEDAKRLRAQV 367
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 381
Score = 23.3 bits (50), Expect = 9.1
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 47 NPDALRIFTTTLLRKDFGLNVEIPPMRLVPTLP 79
+ + LLR + + +P
Sbjct: 55 SGSKAVVGELQLLRDHITSDSTPLTFKWEKEIP 87
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 23.1 bits (49), Expect = 9.9
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 11 NKYRVPPDFKQLAIEYPEFRKHLHQE 36
+K+ +P + + PE + +++
Sbjct: 1 HKHAIPANIADRCLINPEQYETKYKQ 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.144 0.438
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,513
Number of extensions: 20276
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 23
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)