BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5105
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DC64|MET16_DANRE Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2
SV=1
Length = 471
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
M+ NK MHPRN+Y+ PPDF LA +YPEF+KH+ L+G++ NF++P+A+R T T+L
Sbjct: 1 MALNKSMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLL 92
++DFGL +EIP RL+PT+PLRLNYI W+EDL+
Sbjct: 61 KEDFGLTIEIPLERLIPTVPLRLNYIHWVEDLI 93
>sp|Q5ZIA0|MET16_CHICK Methyltransferase-like protein 16 OS=Gallus gallus GN=METTL16
PE=2 SV=1
Length = 558
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
M+ NK MH RN+Y+ PPDF LA +YPEFR+H+ L+G++ NF++P+A+R T T+L
Sbjct: 1 MALNKSMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLL 92
++DFGL ++IP RL+PT+PLRLNYI W+EDL+
Sbjct: 61 KEDFGLTIDIPLERLIPTVPLRLNYIHWVEDLI 93
>sp|Q6GR37|MET16_XENLA Methyltransferase-like protein 16 OS=Xenopus laevis GN=mettl16
PE=2 SV=1
Length = 547
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
M+ NK MHPRN+Y+ PPDF LA +YPEF++H++ L+G++ NF++P A+R T T+L
Sbjct: 1 MALNKSMHPRNRYKDKPPDFAYLASKYPEFKQHVNVNLAGRVSLNFKDPCAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLL 92
++DFGL ++IP RL+PT+PLRLNYI W+EDL+
Sbjct: 61 KEDFGLTIDIPLERLIPTVPLRLNYIHWVEDLI 93
>sp|Q9CQG2|MET16_MOUSE Methyltransferase-like protein 16 OS=Mus musculus GN=Mettl16 PE=1
SV=1
Length = 553
Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
M+ +K MH RN+Y+ PPDF LA +YP+F++H+ L+G++ NF++P+A+R T T+L
Sbjct: 1 MALSKSMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLL 92
R+DFGL+++IP RL+PT+PLRLNYI W+EDL+
Sbjct: 61 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLI 93
>sp|Q09357|MET16_CAEEL Methyltransferase-like protein 16 homolog OS=Caenorhabditis
elegans GN=mett-10 PE=1 SV=2
Length = 479
Score = 116 bits (290), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
MS N MHPRN YR PPDFK LA+EYPEFRK +GK+ F+F+ A+R T T+L
Sbjct: 1 MSQNNEMHPRNPYRNKPPDFKALAVEYPEFRKFCQYVSNGKVTFDFKKDAAVRCLTQTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQIS 98
+KDF L+VEIPP LVP +P +LNY L I+DLL+AN+++
Sbjct: 61 KKDFNLDVEIPPGHLVPRVPQKLNYCLLIDDLLKANKLT 99
>sp|Q86W50|MET16_HUMAN Methyltransferase-like protein 16 OS=Homo sapiens GN=METTL16 PE=1
SV=2
Length = 562
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
M+ +K MH RN+Y+ PPDF LA +YP+F++H+ L+G++ NF++P+A+R T T+L
Sbjct: 1 MALSKSMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLL 92
R+DFGL+++IP RL+PT+PLRLNYI W+EDL+
Sbjct: 61 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLI 93
>sp|Q61J97|MET16_CAEBR Methyltransferase-like protein 16 homolog OS=Caenorhabditis
briggsae GN=CBG09879 PE=3 SV=1
Length = 481
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 1 MSFNKFMHPRNKYR-VPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVL 59
M+ MHPRN YR PPDFK LAIEYPEFRK +GK+ +F+ A+R T T+L
Sbjct: 1 MAQGNEMHPRNPYRDKPPDFKALAIEYPEFRKFCQYVSNGKVTLDFRKDAAVRCLTQTLL 60
Query: 60 RKDFGLNVEIPPMRLVPTLPLRLNYILWIEDLLEANQISS 99
+KDF LNV +P LVP +P +LNY L I+D+L+AN I+S
Sbjct: 61 KKDFSLNVNLPAGHLVPRVPQKLNYCLLIDDILQANSITS 100
>sp|Q290Z2|MET16_DROPS Methyltransferase-like protein 16 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA20428 PE=3 SV=2
Length = 305
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 4 NKF-MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKD 62
NK+ MHPRN RVPPD+ +LAI+Y +FR+ EL+GK+ NF+N LR + +L++
Sbjct: 7 NKYAMHPRNILRVPPDYTKLAIKYRDFRQVCELELTGKVSVNFRNEKTLRELSKMLLKEY 66
Query: 63 FGLNVEIPPMRLVPTLPLRLNYILWIEDLL 92
F L+V+ P LVPTL LRLNYILW+ED+L
Sbjct: 67 FELDVDFAPGSLVPTLALRLNYILWLEDML 96
>sp|Q7K3B9|MET16_DROME Methyltransferase-like protein 16 homolog OS=Drosophila
melanogaster GN=CG7544 PE=2 SV=1
Length = 305
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 61/87 (70%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
MHPRN R PD+ ++AI+Y +FR+ EL+GK+ NF+N LR T +L++ + L+
Sbjct: 13 MHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVNFRNEKTLRELTKMLLKEYYDLD 72
Query: 67 VEIPPMRLVPTLPLRLNYILWIEDLLE 93
V+ P LVPTL LRLNYILW+EDL+E
Sbjct: 73 VDFAPGSLVPTLALRLNYILWLEDLME 99
>sp|Q554C9|MET16_DICDI Methyltransferase-like protein 16 homolog OS=Dictyostelium
discoideum GN=DDB_G0275203 PE=3 SV=1
Length = 568
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 4 NKFMHPRNKYRV-PPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKD 62
N MH N YR PP+FK LA +YP F K++ + ++++ +A + T +L D
Sbjct: 39 NDSMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATKELTRVLLDHD 98
Query: 63 FGLNVEIPPMRLVPTLPLRLNYILWIEDLLE 93
FGL +E+P L PTL LR+NY+ WI D L+
Sbjct: 99 FGLRIELPDNYLCPTLTLRINYLYWISDQLK 129
>sp|A4VP05|RLMF_PSEU5 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
stutzeri (strain A1501) GN=rlmF PE=3 SV=1
Length = 327
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN++ DF +L PE +++ GK +F NPDA+R+F +LR+ +G+
Sbjct: 18 LHPRNRHSGRYDFPKLIAACPELGEYVILNPYGKQSIDFANPDAVRVFNRALLRQFYGIQ 77
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEAN 95
+ +IP L P +P R +Y+ + DLL A+
Sbjct: 78 HWDIPAGYLCPPVPGRADYLHGLADLLAAD 107
>sp|A6W2M9|RLMF_MARMS Ribosomal RNA large subunit methyltransferase F OS=Marinomonas sp.
(strain MWYL1) GN=rlmF PE=3 SV=1
Length = 327
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN +R DF LA PE + G +F NP+A++ +L +G+
Sbjct: 18 LHPRNPHRARYDFALLADSCPELSGFIQLNQYGNESVDFANPNAVKTLNRALLNHFYGVA 77
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEANQI 97
+IPP L P +P R +YI ++ DLL A+ +
Sbjct: 78 FWDIPPGYLCPPIPGRADYIHYLADLLAASNL 109
>sp|Q3KHM8|RLMF_PSEPF Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rlmF PE=3 SV=1
Length = 340
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF L PE K + GK +F +PDA+R+F +L+ +G+
Sbjct: 31 LHPRNRHQGRYDFPALIKTTPELAKFVITNPYGKESIDFASPDAVRVFNRALLKSFYGIQ 90
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEAN 95
+ +IP L P +P R +YI ++ DLL +N
Sbjct: 91 HWDIPADYLCPPVPGRADYIHFLADLLASN 120
>sp|Q1I5F5|RLMF_PSEE4 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
entomophila (strain L48) GN=rlmF PE=3 SV=1
Length = 316
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF L +P+ + GK +F NP+A+R+F +L+ +G+
Sbjct: 7 LHPRNRHQGRYDFPALIKAHPDLARFTITNPYGKPSIDFANPEAVRVFNRALLKAQYGVQ 66
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ +IP L P +P R +YI + DLL
Sbjct: 67 HWDIPADYLCPPIPGRADYIHVLADLL 93
>sp|B1JBB3|RLMF_PSEPW Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain W619) GN=rlmF PE=3 SV=1
Length = 316
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLR 60
M+ +HPRN+++ DF L +P+ + GK +F NP+A+R+F +L+
Sbjct: 1 MTQKPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLK 60
Query: 61 KDFGL-NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+G+ + +IP L P +P R +YI DLL
Sbjct: 61 AQYGIQHWDIPADYLCPPIPGRADYIHVAADLL 93
>sp|B0KQK4|RLMF_PSEPG Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain GB-1) GN=rlmF PE=3 SV=1
Length = 316
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLR 60
M+ +HPRN+++ DF L +P+ + GK +F NP+A+R+F +L+
Sbjct: 1 MTEKPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLK 60
Query: 61 KDFGL-NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+G+ + +IP L P +P R +YI DLL
Sbjct: 61 AQYGIQHWDIPADYLCPPIPGRADYIHVAADLL 93
>sp|A5VZ65|RLMF_PSEP1 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=rlmF PE=3 SV=1
Length = 317
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF L +P+ + GK +F NP+A+R+F +L+ +G+
Sbjct: 8 LHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKAQYGIQ 67
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ +IP L P +P R +YI DLL
Sbjct: 68 HWDIPADYLCPPIPGRADYIHVAADLL 94
>sp|Q88P77|RLMF_PSEPK Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain KT2440) GN=rlmF PE=3 SV=1
Length = 317
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF L +P+ + GK +F NP+A+R+F +L+ +G+
Sbjct: 8 LHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKAQYGIQ 67
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ +IP L P +P R +YI DLL
Sbjct: 68 HWDIPADYLCPPIPGRADYIHVAADLL 94
>sp|A4SKI2|RLMF_AERS4 Ribosomal RNA large subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rlmF PE=3 SV=1
Length = 325
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ P DF L + PE R + G +F +P A++ +L +G+
Sbjct: 21 LHPRNRHQAPYDFDALCLRTPELRPLVFVNEHGTQTLDFADPAAVKALNKALLALHYGIA 80
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ ++P L P +P R++Y+ + DLL
Sbjct: 81 HWDLPAGYLCPPIPGRVDYLHRVADLL 107
>sp|Q4KHU0|RLMF_PSEF5 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=rlmF PE=3
SV=2
Length = 341
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF QL PE + + GK +F +P A+R+F +L+ +G+
Sbjct: 31 LHPRNRHQGRYDFPQLIKSTPELGQFVILNPYGKESIDFADPAAVRVFNRALLKAFYGIA 90
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEA-NQISSP 100
+ +IP L P +P R +Y+ ++ DLL + NQ P
Sbjct: 91 HWDIPADFLCPPVPGRADYVHFLADLLASHNQGEIP 126
>sp|Q4ZXI1|RLMF_PSEU2 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=rlmF PE=3 SV=1
Length = 328
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF +L PE + GK +F NP A+R+F +L+ +G+
Sbjct: 27 LHPRNRHQGQYDFAKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKAFYGIA 86
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ +IP L P +P R +Y+ ++ DLL
Sbjct: 87 HWDIPADYLCPPIPGRADYLHFLADLL 113
>sp|C3K6G1|RLMF_PSEFS Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
fluorescens (strain SBW25) GN=rlmF PE=3 SV=1
Length = 339
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN++ DF+ L PE + + GK +F +PDA+R+F +L+ +G+
Sbjct: 31 LHPRNRHTGRYDFQALIKTTPELAQFVIINPYGKESIDFASPDAVRVFNRALLKSFYGIQ 90
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEA 94
+ +IP L P +P R +Y+ ++ DLL +
Sbjct: 91 HWDIPADYLCPPVPGRADYVHFLADLLAS 119
>sp|A4TM00|RLMF_YERPP Ribosomal RNA large subunit methyltransferase F OS=Yersinia pestis
(strain Pestoides F) GN=rlmF PE=3 SV=1
Length = 336
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|Q0HP08|RLMF_SHESM Ribosomal RNA large subunit methyltransferase F OS=Shewanella sp.
(strain MR-4) GN=rlmF PE=3 SV=1
Length = 364
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFG 64
K +HPRN + DF L + YP+ + + G L +F +P A++ +L+ +G
Sbjct: 51 KRLHPRNLHINGYDFPVLMVSYPKLKAFVRPTPYGDLSIDFADPSAVKTLNAALLQHHYG 110
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
L +IP L P +P R++Y+ ++ DLL
Sbjct: 111 LAFWDIPKGALCPPIPGRVDYLHYLADLL 139
>sp|B1JH95|RLMF_YERPY Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rlmF
PE=3 SV=2
Length = 336
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|Q669D4|RLMF_YERPS Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rlmF
PE=3 SV=1
Length = 336
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|B2K7Y6|RLMF_YERPB Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rlmF
PE=3 SV=2
Length = 336
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|A7FGU1|RLMF_YERP3 Ribosomal RNA large subunit methyltransferase F OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rlmF PE=3 SV=1
Length = 336
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|Q1QEW1|RLMF_PSYCK Ribosomal RNA large subunit methyltransferase F OS=Psychrobacter
cryohalolentis (strain K5) GN=rlmF PE=3 SV=2
Length = 345
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN ++ DF+ L PE KH G+ NF + A+R+ +L +G+
Sbjct: 29 LHPRNPHQGRYDFEVLTRALPELAKHTITNPKGESTINFSDSAAVRVLNQALLANYYGVK 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLL 92
+IP L P +P R +YI +I DLL
Sbjct: 89 FWDIPEGYLCPPIPGRADYIHYIADLL 115
>sp|A9R6I2|RLMF_YERPG Ribosomal RNA large subunit methyltransferase F OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rlmF PE=3 SV=1
Length = 336
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLTPTAYGDISVDFADPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADSLCPPIPGRADYVHHLADLLAS 117
>sp|C3LMU1|RLMF_VIBCM Ribosomal RNA large subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rlmF PE=3 SV=1
Length = 362
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L PE + H+ + G+ NF +P ++++ +L +G+
Sbjct: 49 LHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHYGVT 108
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLL 92
+IP L P +P R +YI + DLL
Sbjct: 109 YWDIPEGFLCPPIPGRADYIHRVADLL 135
>sp|Q9KRM2|RLMF_VIBCH Ribosomal RNA large subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rlmF PE=3 SV=1
Length = 362
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L PE + H+ + G+ NF +P ++++ +L +G+
Sbjct: 49 LHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHYGVT 108
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLL 92
+IP L P +P R +YI + DLL
Sbjct: 109 YWDIPEGFLCPPIPGRADYIHRVADLL 135
>sp|A1RQ03|RLMF_SHESW Ribosomal RNA large subunit methyltransferase F OS=Shewanella sp.
(strain W3-18-1) GN=rlmF PE=3 SV=1
Length = 357
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFG 64
K +HPRN + DF L +P + G L +F +P+A++ T +L+ +G
Sbjct: 46 KALHPRNVHINGYDFNALIKAFPRLNAFVRPTSFGGLSIDFADPEAVKTLNTALLKHHYG 105
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
++ +IP L P +P R++Y+ ++ DLL
Sbjct: 106 IDFWDIPKGALCPPIPGRVDYLHYLADLL 134
>sp|A4Y1N1|RLMF_SHEPC Ribosomal RNA large subunit methyltransferase F OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rlmF PE=3
SV=1
Length = 357
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFG 64
K +HPRN + DF L +P + G L +F +P+A++ T +L+ +G
Sbjct: 46 KALHPRNVHINGYDFNALIKAFPRLNAFVRPTSFGGLSIDFADPEAVKTLNTALLKHHYG 105
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
++ +IP L P +P R++Y+ ++ DLL
Sbjct: 106 IDFWDIPKGALCPPIPGRVDYLHYLADLL 134
>sp|A5WBC6|RLMF_PSYWF Ribosomal RNA large subunit methyltransferase F OS=Psychrobacter
sp. (strain PRwf-1) GN=rlmF PE=3 SV=1
Length = 327
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN ++ DF +L PE KH SG+ NF + DA+ +L + +
Sbjct: 24 LHPRNPHQGRYDFDKLIKALPELEKHAITNPSGEATINFSDADAVLTLNKALLAHHYNIK 83
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEANQISS 99
++P L P +P R +YI + DLL N S
Sbjct: 84 YWDLPKGYLCPPIPGRADYIHQVADLLNNNNSGS 117
>sp|A1JU40|RLMF_YERE8 Ribosomal RNA large subunit methyltransferase F OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rlmF PE=3 SV=1
Length = 335
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L++ PE L G + +F +P A+++ +L+ +G+
Sbjct: 29 LHPRNRHRSRYDFDALSVSCPELIPFLAPTAYGDISIDFASPLAVKMLNKALLKHFYGIE 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEA 94
+IP L P +P R +Y+ + DLL +
Sbjct: 89 YWDIPADFLCPPIPGRADYVHHLADLLAS 117
>sp|Q64RQ5|RLMF_BACFR Ribosomal RNA large subunit methyltransferase F OS=Bacteroides
fragilis (strain YCH46) GN=rlmF PE=3 SV=1
Length = 305
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+H RN++ DF +L EYP +K + G +F NP A++ +L +G+
Sbjct: 7 LHKRNRHNGQYDFSRLTEEYPPLKKFIVLNAYGTTSIDFFNPRAVKALNKALLISCYGIR 66
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEAN 95
+IP L P +P R +YI +I DL++ +
Sbjct: 67 YWDIPKNYLCPPIPGRADYIHYIADLIQPD 96
>sp|Q887M4|RLMF_PSESM Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmF PE=3 SV=2
Length = 328
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF +L PE + GK +F NP A+R+F +L+ +G+
Sbjct: 27 LHPRNRHQGHYDFPKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKAFYGIA 86
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEANQ 96
+ +IP L P +P R +Y+ ++ D+L +
Sbjct: 87 HWDIPADYLCPPIPGRADYLHFLADVLAEDH 117
>sp|Q4FVS6|RLMF_PSYA2 Ribosomal RNA large subunit methyltransferase F OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=rlmF PE=3 SV=1
Length = 345
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN ++ DF L PE KH G+ NF + A+R+ +L +G+
Sbjct: 29 LHPRNPHQGRYDFVALTHALPELAKHTITNPKGEPTINFSDSAAVRVLNQALLAHYYGVK 88
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLL 92
+IP L P +P R +YI +I DLL
Sbjct: 89 FWDIPEGYLCPPIPGRADYIHYIADLL 115
>sp|Q6LIW6|RLMF_PHOPR Ribosomal RNA large subunit methyltransferase F OS=Photobacterium
profundum GN=rlmF PE=3 SV=1
Length = 338
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN + DF L + P+ + + G L +F +P A+++ +L + +
Sbjct: 15 LHPRNPHSQRYDFNALILSCPDLTPFVAENQFGDLSVDFSDPAAVKMLNKALLHHFYNVE 74
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
N +IPP L P +P R +YI I DLL
Sbjct: 75 NWDIPPGYLCPPIPGRADYIHHIADLL 101
>sp|B8E3W0|RLMF_SHEB2 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS223) GN=rlmF PE=3 SV=1
Length = 365
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLR 60
+ K +HPRN + DF L +P + + G L +F +P A++ +L+
Sbjct: 50 VEIKKALHPRNAHLNGYDFPALISAFPRLKTFVRPTPYGALSIDFADPLAVKTLNAALLK 109
Query: 61 KDFGLNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
+G+ +IP L P +P R++Y+ ++ DLL
Sbjct: 110 HHYGIGAWDIPQGALCPPIPGRVDYVHYVADLL 142
>sp|A0KHV5|RLMF_AERHH Ribosomal RNA large subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rlmF PE=3 SV=1
Length = 318
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ P DF L PE + + G +F +P A++ +L +G+
Sbjct: 11 LHPRNRHQAPYDFDALCQRTPELQPFVFVNEHGTQTLDFADPAAVKALNKALLALHYGIA 70
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ ++P L P +P R++Y+ + DLL
Sbjct: 71 HWDLPAGYLCPPIPGRVDYLHRVADLL 97
>sp|A9KVB0|RLMF_SHEB9 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS195) GN=rlmF PE=3 SV=1
Length = 365
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 5 KFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFG 64
K +HPRN + DF L +P + + G L NF +P A++ +L+ +G
Sbjct: 54 KALHPRNAHLNGYDFPALISAFPRLKTFVRPTPYGALSVNFADPLAVKTLNAALLKHHYG 113
Query: 65 LNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
+ IP L P +P R++Y+ ++ DLL
Sbjct: 114 IGSWNIPEGALCPPIPGRVDYVHYVADLL 142
>sp|Q48MF3|RLMF_PSE14 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rlmF PE=3 SV=2
Length = 328
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN+++ DF +L PE + GK +F +P A+R+F +L+ +G+
Sbjct: 27 LHPRNRHQGHYDFAKLIKSSPELAAFVILNPYGKESIDFADPQAVRVFNRALLKAFYGIA 86
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLL 92
+ +IP L P +P R +Y+ ++ DLL
Sbjct: 87 HWDIPADYLCPPIPGRADYLHFLADLL 113
>sp|Q12T32|RLMF_SHEDO Ribosomal RNA large subunit methyltransferase F OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=rlmF PE=3 SV=1
Length = 360
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 3 FNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKD 62
K +HPRN ++ DF L+ P + G + +F NPDA++ +L
Sbjct: 42 LTKALHPRNVHKYGYDFAALSKTLPALTPFVGPNAYGNISIDFANPDAVKQLNAALLLHH 101
Query: 63 FGL-NVEIPPMRLVPTLPLRLNYILWIEDLLEA 94
+ + + +IP L P +P R++Y+ ++ DLL A
Sbjct: 102 YSIRDWDIPHGYLCPPIPGRVDYLHYLADLLSA 134
>sp|A6WHK9|RLMF_SHEB8 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS185) GN=rlmF PE=3 SV=1
Length = 365
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MSFNKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLR 60
+ K +HPRN + DF L +P+ + + G L +F +P A++ +L+
Sbjct: 50 VEIKKALHPRNAHLNGYDFPALISAFPQLKTFVRPTPYGALSVDFADPLAVKTLNAALLK 109
Query: 61 KDFGLNV-EIPPMRLVPTLPLRLNYILWIEDLL 92
+G+ IP L P +P R++Y+ ++ DLL
Sbjct: 110 HHYGIGSWNIPEGALCPPIPGRVDYVHYVADLL 142
>sp|A8HA69|RLMF_SHEPA Ribosomal RNA large subunit methyltransferase F OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=rlmF PE=3
SV=1
Length = 380
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 4 NKFMHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDF 63
+K +HPRN + DF L +P+ + + G L +F +P A+++ +L+ +
Sbjct: 46 SKALHPRNAHNNGYDFAALVTAFPKLKAFVKPNPYGNLSIDFADPVAVKMLNAALLKFHY 105
Query: 64 GL-NVEIPPMRLVPTLPLRLNYILWIEDLLEANQIS 98
G+ + +IP L P +P R +YI + DLL + S
Sbjct: 106 GVGHWDIPDGFLCPPIPGRADYIHHVADLLAVKKSS 141
>sp|B1KP42|RLMF_SHEWM Ribosomal RNA large subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rlmF PE=3 SV=1
Length = 382
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGL- 65
+HPRN +R DF +L P ++ G L +F +P A++ +L+ D+ +
Sbjct: 45 LHPRNLHRDGYDFDKLTKVSPVLTPYVQPNPYGNLSIDFADPQAVKALNAAILKLDYQID 104
Query: 66 NVEIPPMRLVPTLPLRLNYILWIEDLLEA 94
N +IP L P +P R++Y+ +I DLL
Sbjct: 105 NWDIPEGFLCPPIPGRVDYLHYIYDLLAG 133
>sp|C1DPF6|RLMF_AZOVD Ribosomal RNA large subunit methyltransferase F OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=rlmF PE=3 SV=1
Length = 335
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+HPRN++R DF L +P + GK +F +P+A++ +L + +G+
Sbjct: 18 LHPRNRHRGRYDFPALIRRHPALAAFVILNPYGKRSIDFADPEAVKALNRALLAEHYGIR 77
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLEANQ 96
+IPP L P +P R +Y+ + DLL A
Sbjct: 78 QWDIPPGYLCPPIPGRADYLHGLADLLAAEH 108
>sp|Q5LBA7|RLMF_BACFN Ribosomal RNA large subunit methyltransferase F OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=rlmF PE=3
SV=1
Length = 305
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 7 MHPRNKYRVPPDFKQLAIEYPEFRKHLHQELSGKLKFNFQNPDALRIFTTTVLRKDFGLN 66
+H RN++ DF +L EYP +K + G +F NP A++ +L +G+
Sbjct: 7 LHKRNRHNGQYDFSRLTEEYPPLKKFIVLNAYGTTSIDFFNPRAVKALNKALLISYYGIR 66
Query: 67 V-EIPPMRLVPTLPLRLNYILWIEDLLE 93
+IP L P +P R +YI +I DL++
Sbjct: 67 YWDIPKNYLCPPIPGRADYIHYIADLIQ 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,296,301
Number of Sequences: 539616
Number of extensions: 1436759
Number of successful extensions: 4090
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3831
Number of HSP's gapped (non-prelim): 139
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)