Query psy5107
Match_columns 74
No_of_seqs 100 out of 1021
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 17:27:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0527|consensus 99.9 3.5E-25 7.5E-30 163.5 6.1 62 10-71 55-116 (331)
2 PTZ00199 high mobility group p 99.9 6.9E-22 1.5E-26 122.9 7.4 66 7-72 12-79 (94)
3 cd01389 MATA_HMG-box MATA_HMG- 99.9 8.2E-22 1.8E-26 117.6 6.0 56 17-72 1-56 (77)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 9.5E-22 2.1E-26 116.2 6.0 56 17-72 1-56 (72)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 1.5E-19 3.3E-24 103.3 5.9 55 18-72 1-55 (66)
6 PF00505 HMG_box: HMG (high mo 99.8 5.5E-19 1.2E-23 101.9 5.1 55 18-72 1-55 (69)
7 smart00398 HMG high mobility g 99.8 2.1E-18 4.4E-23 98.9 6.1 56 17-72 1-56 (70)
8 KOG0528|consensus 99.8 2.4E-19 5.3E-24 137.3 2.7 60 12-71 320-379 (511)
9 cd00084 HMG-box High Mobility 99.8 2.1E-18 4.5E-23 97.9 5.8 55 18-72 1-55 (66)
10 COG5648 NHP6B Chromatin-associ 99.8 1.2E-18 2.6E-23 122.2 5.8 64 9-72 62-125 (211)
11 PF09011 HMG_box_2: HMG-box do 99.7 1.6E-16 3.5E-21 94.0 5.4 58 15-72 1-59 (73)
12 KOG0381|consensus 99.6 5.6E-16 1.2E-20 94.8 6.6 56 14-69 17-74 (96)
13 KOG3248|consensus 99.5 4.4E-14 9.5E-19 105.6 4.6 67 6-72 180-246 (421)
14 KOG0526|consensus 99.4 2.9E-13 6.4E-18 105.4 5.2 57 7-65 525-581 (615)
15 KOG2746|consensus 99.2 1.7E-11 3.8E-16 97.1 3.0 66 8-73 172-239 (683)
16 KOG4715|consensus 98.8 8.8E-09 1.9E-13 77.0 5.3 59 12-70 59-117 (410)
17 PF04769 MAT_Alpha1: Mating-ty 98.0 1.5E-05 3.2E-10 55.9 6.1 59 10-72 36-94 (201)
18 PF08073 CHDNT: CHDNT (NUC034) 97.3 0.00054 1.2E-08 39.5 4.3 39 22-60 13-51 (55)
19 PF06382 DUF1074: Protein of u 96.9 0.0014 3.1E-08 45.6 4.1 45 22-70 83-127 (183)
20 PF04690 YABBY: YABBY protein; 96.9 0.003 6.4E-08 43.5 5.6 46 15-60 119-164 (170)
21 COG5648 NHP6B Chromatin-associ 93.1 0.048 1E-06 38.8 1.3 54 17-70 143-196 (211)
22 PF06244 DUF1014: Protein of u 93.0 0.28 6E-06 32.2 4.7 47 15-61 69-116 (122)
23 PF14887 HMG_box_5: HMG (high 88.5 2.1 4.5E-05 26.5 5.2 53 18-71 4-56 (85)
24 KOG3223|consensus 83.1 0.99 2.1E-05 32.2 2.1 46 16-61 162-208 (221)
25 TIGR03481 HpnM hopanoid biosyn 77.1 1.8 4E-05 29.8 1.9 32 41-72 62-94 (198)
26 PRK15117 ABC transporter perip 74.5 2.8 6.1E-05 29.2 2.3 32 41-72 66-98 (211)
27 PF09164 VitD-bind_III: Vitami 70.8 16 0.00034 21.8 4.5 32 23-54 9-40 (68)
28 PF13412 HTH_24: Winged helix- 61.3 10 0.00022 19.7 2.3 21 37-57 12-32 (48)
29 cd08317 Death_ank Death domain 58.5 5.5 0.00012 23.6 1.0 19 41-59 3-21 (84)
30 smart00271 DnaJ DnaJ molecular 58.2 20 0.00043 19.1 3.2 35 29-63 19-59 (60)
31 PRK10236 hypothetical protein; 57.8 7.3 0.00016 28.3 1.7 25 48-72 118-142 (237)
32 PF06945 DUF1289: Protein of u 57.4 9.3 0.0002 21.0 1.8 24 44-72 23-46 (51)
33 PRK14279 chaperone protein Dna 55.1 19 0.0004 27.3 3.6 39 29-67 27-70 (392)
34 PRK10266 curved DNA-binding pr 54.6 29 0.00064 25.2 4.5 42 29-70 22-67 (306)
35 PRK14285 chaperone protein Dna 51.1 31 0.00068 25.8 4.2 40 29-68 21-65 (365)
36 PRK14299 chaperone protein Dna 50.6 29 0.00063 25.1 3.9 39 29-67 22-64 (291)
37 PF12290 DUF3802: Protein of u 50.0 32 0.00069 22.4 3.6 38 35-72 49-100 (113)
38 PRK14291 chaperone protein Dna 48.8 29 0.00064 26.1 3.8 39 29-67 21-63 (382)
39 PRK14281 chaperone protein Dna 48.0 27 0.00059 26.4 3.5 39 29-67 21-64 (397)
40 PRK14296 chaperone protein Dna 47.8 35 0.00075 25.7 4.0 39 30-68 23-65 (372)
41 PHA03102 Small T antigen; Revi 47.5 27 0.00058 23.5 3.1 37 29-65 25-62 (153)
42 PRK14283 chaperone protein Dna 46.7 35 0.00075 25.6 3.9 39 29-67 23-65 (378)
43 PTZ00037 DnaJ_C chaperone prot 46.6 35 0.00075 26.3 3.9 40 28-67 45-85 (421)
44 PF00226 DnaJ: DnaJ domain; I 45.5 20 0.00044 19.4 1.9 37 29-65 18-60 (64)
45 PRK14280 chaperone protein Dna 44.9 39 0.00085 25.3 3.9 39 29-67 22-64 (376)
46 PF06242 DUF1013: Protein of u 44.8 17 0.00036 24.5 1.7 19 36-54 77-95 (140)
47 KOG0713|consensus 44.5 40 0.00087 25.7 3.9 37 30-66 35-76 (336)
48 PF05494 Tol_Tol_Ttg2: Toluene 43.3 8.4 0.00018 25.3 0.1 33 40-72 35-68 (170)
49 PRK14276 chaperone protein Dna 42.1 46 0.001 25.0 4.0 39 29-67 22-64 (380)
50 PRK14295 chaperone protein Dna 41.9 48 0.001 25.1 4.0 42 29-70 27-73 (389)
51 PRK14290 chaperone protein Dna 41.5 49 0.0011 24.7 4.0 39 29-67 21-65 (365)
52 PRK14286 chaperone protein Dna 39.7 51 0.0011 24.7 3.8 39 29-67 22-65 (372)
53 PRK14284 chaperone protein Dna 39.5 44 0.00096 25.2 3.5 40 30-69 20-64 (391)
54 PRK14294 chaperone protein Dna 39.4 48 0.001 24.7 3.7 39 29-67 22-65 (366)
55 PRK14297 chaperone protein Dna 38.9 55 0.0012 24.6 3.9 38 29-66 22-64 (380)
56 PRK14287 chaperone protein Dna 38.5 59 0.0013 24.4 4.0 40 29-68 22-65 (371)
57 PF06417 DUF1077: Protein of u 37.5 12 0.00026 24.5 0.2 12 20-31 27-38 (124)
58 PRK14288 chaperone protein Dna 36.5 64 0.0014 24.2 3.9 40 29-68 21-65 (369)
59 cd06257 DnaJ DnaJ domain or J- 35.8 67 0.0014 16.5 3.9 33 29-61 18-55 (55)
60 PRK14278 chaperone protein Dna 35.1 65 0.0014 24.2 3.8 38 29-66 21-62 (378)
61 KOG0715|consensus 35.0 57 0.0012 23.8 3.4 35 32-66 64-102 (288)
62 PF13542 HTH_Tnp_ISL3: Helix-t 34.2 40 0.00087 17.5 1.9 31 28-58 12-43 (52)
63 KOG0493|consensus 34.1 72 0.0016 24.1 3.8 28 10-40 238-265 (342)
64 PF06628 Catalase-rel: Catalas 34.0 18 0.0004 20.7 0.6 20 52-71 13-32 (68)
65 PF10771 DUF2582: Protein of u 34.0 24 0.00052 20.6 1.1 27 45-71 3-29 (65)
66 PF15581 Imm35: Immunity prote 33.8 45 0.00097 21.0 2.3 29 44-72 31-59 (93)
67 TIGR02349 DnaJ_bact chaperone 33.4 77 0.0017 23.4 3.9 39 29-67 18-60 (354)
68 PRK14298 chaperone protein Dna 33.3 68 0.0015 24.2 3.6 38 30-67 24-65 (377)
69 PF15076 DUF4543: Domain of un 33.0 39 0.00085 20.3 1.9 21 11-31 25-45 (75)
70 PRK14282 chaperone protein Dna 32.7 62 0.0013 24.2 3.3 39 29-67 22-66 (369)
71 PRK14277 chaperone protein Dna 32.4 80 0.0017 23.8 3.9 40 29-68 23-67 (386)
72 PRK14292 chaperone protein Dna 30.9 93 0.002 23.2 4.0 39 30-68 21-63 (371)
73 KOG1827|consensus 30.6 2.2 4.8E-05 34.7 -4.9 44 21-64 552-595 (629)
74 PF13404 HTH_AsnC-type: AsnC-t 30.1 60 0.0013 16.9 2.1 18 36-53 11-28 (42)
75 PF06183 DinI: DinI-like famil 29.1 1.2E+02 0.0026 17.4 3.9 24 21-44 2-25 (65)
76 COG0484 DnaJ DnaJ-class molecu 28.9 99 0.0022 23.8 3.9 37 30-66 23-64 (371)
77 PRK10767 chaperone protein Dna 28.7 1.1E+02 0.0023 22.9 4.0 39 29-67 22-65 (371)
78 PRK14293 chaperone protein Dna 28.6 97 0.0021 23.2 3.8 39 28-66 20-62 (374)
79 PF10668 Phage_terminase: Phag 28.6 70 0.0015 18.4 2.4 24 22-53 10-33 (60)
80 cd08805 Death_ank1 Death domai 28.5 21 0.00046 21.6 0.2 18 42-59 4-21 (84)
81 PF04994 TfoX_C: TfoX C-termin 27.3 53 0.0012 19.6 1.8 38 34-71 40-81 (81)
82 KOG3318|consensus 26.7 25 0.00054 24.5 0.3 12 20-31 71-82 (178)
83 cd08804 Death_ank2 Death domai 25.7 34 0.00074 20.5 0.8 18 42-59 4-21 (84)
84 cd01670 Death Death Domain: a 25.4 41 0.00089 18.8 1.0 14 46-59 3-16 (79)
85 PRK14301 chaperone protein Dna 25.2 1.2E+02 0.0027 22.7 3.8 39 29-67 22-65 (373)
86 smart00351 PAX Paired Box doma 24.2 1.3E+02 0.0027 19.0 3.3 19 36-54 87-105 (125)
87 PF02650 HTH_WhiA: WhiA C-term 24.2 54 0.0012 19.9 1.5 19 34-52 46-64 (85)
88 PF11903 DUF3423: Protein of u 24.0 1.1E+02 0.0023 18.2 2.7 34 20-54 23-56 (72)
89 PF14374 Ribos_L4_asso_C: 60S 23.2 49 0.0011 20.1 1.1 14 40-53 7-20 (80)
90 cd00243 Lysin-Sp18 Sp18 and Ly 22.9 84 0.0018 20.6 2.3 29 23-54 53-84 (122)
91 PRK14289 chaperone protein Dna 22.4 1.8E+02 0.0039 21.8 4.2 37 30-66 24-65 (386)
92 PF12881 NUT_N: NUT protein N 22.0 3.1E+02 0.0067 21.0 5.3 34 38-71 245-278 (328)
93 PF10945 DUF2629: Protein of u 21.8 40 0.00086 18.5 0.5 29 41-73 16-44 (44)
94 cd08779 Death_PIDD Death Domai 21.1 52 0.0011 19.7 1.0 15 45-59 5-19 (86)
95 PF11460 DUF3007: Protein of u 20.7 94 0.002 19.9 2.1 35 33-71 68-102 (104)
96 PF01630 Glyco_hydro_56: Hyalu 20.7 2.3E+02 0.0049 21.6 4.4 34 23-56 120-153 (337)
No 1
>KOG0527|consensus
Probab=99.91 E-value=3.5e-25 Score=163.48 Aligned_cols=62 Identities=45% Similarity=0.651 Sum_probs=59.1
Q ss_pred ccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 10 TKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 10 ~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
..++..+||||||||||+|++++|++|.++||+|+|+||||+||.+|+.|+++||+||+|++
T Consensus 55 ~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 55 KDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred cCCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999986
No 2
>PTZ00199 high mobility group protein; Provisional
Probab=99.87 E-value=6.9e-22 Score=122.93 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=60.9
Q ss_pred CccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 7 MRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMH--NAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 7 ~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~--~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+.++++||+.||||+||||+|++++|..|..+||+++ +++||++||++|+.||++||.+|.+.+.
T Consensus 12 ~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~ 79 (94)
T PTZ00199 12 KNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQ 79 (94)
T ss_pred ccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999997 8999999999999999999999988764
No 3
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.86 E-value=8.2e-22 Score=117.63 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 17 ~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+||||+||||+|+++.|..|+++||+++++|||++||++|+.|+++||.+|.+.+.
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~ 56 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAE 56 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998764
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.86 E-value=9.5e-22 Score=116.22 Aligned_cols=56 Identities=41% Similarity=0.385 Sum_probs=54.2
Q ss_pred CCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 17 ~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
|||||+||||+|++++|..|+++||++++.|||++||++|+.||++||.+|.+.+.
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~ 56 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAK 56 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998875
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.80 E-value=1.5e-19 Score=103.34 Aligned_cols=55 Identities=27% Similarity=0.271 Sum_probs=53.1
Q ss_pred CCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 18 IKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 18 pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
||||+||||+|++++|..++.+||++++.+|++.||++|+.||++||.+|.+.+.
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~ 55 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAE 55 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999998764
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.77 E-value=5.5e-19 Score=101.94 Aligned_cols=55 Identities=38% Similarity=0.393 Sum_probs=51.0
Q ss_pred CCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 18 IKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 18 pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
||||+||||+|+++++..++.+||++++.+|+++||.+|+.||++||.+|.+.+.
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~ 55 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAE 55 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999988764
No 7
>smart00398 HMG high mobility group.
Probab=99.76 E-value=2.1e-18 Score=98.88 Aligned_cols=56 Identities=41% Similarity=0.427 Sum_probs=53.4
Q ss_pred CCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 17 ~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.||||+||||+|+++.|..+..+||++++++|+++||.+|+.||++||.+|.+.+.
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~ 56 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAK 56 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999988753
No 8
>KOG0528|consensus
Probab=99.76 E-value=2.4e-19 Score=137.30 Aligned_cols=60 Identities=48% Similarity=0.597 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
-..+.||||||||||.|+++.|++|.+.+|+++|.+|||+||..|+.||.-||+||.|+-
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQ 379 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQ 379 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHH
Confidence 345679999999999999999999999999999999999999999999999999999873
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.76 E-value=2.1e-18 Score=97.87 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 18 IKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 18 pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
||||+||||+|+++.|..++.+||+++..+|++.+|.+|+.|+++||.+|.+.+.
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~ 55 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAE 55 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999998763
No 10
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.76 E-value=1.2e-18 Score=122.24 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=61.3
Q ss_pred cccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 9 ATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 9 ~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.++++|||.||||++|||+|+.++|.+|++.+|++++.+|++++|++|+.|++.||.||-+.+.
T Consensus 62 ~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~ 125 (211)
T COG5648 62 VRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEAN 125 (211)
T ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999999988764
No 11
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.66 E-value=1.6e-16 Score=93.97 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCCCCCCchhHhHhHHHHHHHHHh-CCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 15 PNHIKRPMNAFMVWSQMERRKICEV-QPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 15 ~~~pKRP~nAfmlf~~~~R~~i~~~-~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
|++||||+|||++|+++++..++.. .+.....|+++.+|..|+.||++||.+|.+++.
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~ 59 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAK 59 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6789999999999999999999999 788889999999999999999999999999874
No 12
>KOG0381|consensus
Probab=99.64 E-value=5.6e-16 Score=94.79 Aligned_cols=56 Identities=27% Similarity=0.381 Sum_probs=53.1
Q ss_pred CC--CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHH
Q psy5107 14 NP--NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAE 69 (74)
Q Consensus 14 ~~--~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e 69 (74)
++ +.||||++||++|+++.|..++.+||++++.||++.+|++|..|+++||.+|-+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ 74 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEE 74 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66 499999999999999999999999999999999999999999999999999843
No 13
>KOG3248|consensus
Probab=99.47 E-value=4.4e-14 Score=105.62 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 6 PMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 6 ~~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.+++.+....|||.|+||||+|++++|++|.+++......+|.++||..|-.||.+|.-.|+|.++
T Consensus 180 ~~k~e~e~KkphiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElAr 246 (421)
T KOG3248|consen 180 ESKKEEEAKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELAR 246 (421)
T ss_pred hccccccccCccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Confidence 3444445345699999999999999999999999998889999999999999999999999999876
No 14
>KOG0526|consensus
Probab=99.40 E-value=2.9e-13 Score=105.40 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=53.5
Q ss_pred CccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcch
Q psy5107 7 MRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNW 65 (74)
Q Consensus 7 ~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~ 65 (74)
.+++|++|||+||||++|||+|.+..|..|+.+ +.+++||+|.+|++|+.||..|+|
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~k~~w 581 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSAKEEW 581 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcccchh
Confidence 466788999999999999999999999999998 999999999999999999997776
No 15
>KOG2746|consensus
Probab=99.16 E-value=1.7e-11 Score=97.08 Aligned_cols=66 Identities=29% Similarity=0.429 Sum_probs=60.9
Q ss_pred ccccCCCCCCCCCCCchhHhHhHHHH--HHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhhc
Q psy5107 8 RATKKNNPNHIKRPMNAFMVWSQMER--RKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLFS 73 (74)
Q Consensus 8 ~~~kk~~~~~pKRP~nAfmlf~~~~R--~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~~ 73 (74)
+...|.+..|++|||||||+|++.+| ..+.+.||+.+|.-||++||+.|-.|-..||+.|--.++|
T Consensus 172 rspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Q 239 (683)
T KOG2746|consen 172 RSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQ 239 (683)
T ss_pred CCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHH
Confidence 44566778899999999999999999 9999999999999999999999999999999999877765
No 16
>KOG4715|consensus
Probab=98.80 E-value=8.8e-09 Score=77.04 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHH
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQ 70 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~ 70 (74)
.+.|..|-+|+-.||.|++..++.|++.||++.-=||+|+||.||+-|.|+||.-|+-+
T Consensus 59 pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~E 117 (410)
T KOG4715|consen 59 PKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNE 117 (410)
T ss_pred CCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999988743
No 17
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=98.05 E-value=1.5e-05 Score=55.92 Aligned_cols=59 Identities=27% Similarity=0.474 Sum_probs=48.2
Q ss_pred ccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 10 TKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 10 ~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.++....+.+||+|+||.| |.-.....|+....++|.+|+..|.......+|-+.-.+.
T Consensus 36 ~~~~~~~~~kr~lN~Fm~F----Rsyy~~~~~~~~Qk~~S~~l~~lW~~dp~k~~W~l~ak~y 94 (201)
T PF04769_consen 36 SRKRSPEKAKRPLNGFMAF----RSYYSPIFPPLPQKELSGILTKLWEKDPFKNKWSLMAKAY 94 (201)
T ss_pred cccccccccccchhHHHHH----HHHHHhhcCCcCHHHHHHHHHHHHhCCccHhHHHHHhhhh
Confidence 3455667899999999999 5545577899999999999999999998888887765443
No 18
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.33 E-value=0.00054 Score=39.46 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=35.2
Q ss_pred CchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC
Q psy5107 22 MNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKS 60 (74)
Q Consensus 22 ~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s 60 (74)
++.|=+|.+..|+.|.+.||++..+.|-.+++.+||.-+
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999998643
No 19
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=96.93 E-value=0.0014 Score=45.59 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=41.3
Q ss_pred CchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHH
Q psy5107 22 MNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQ 70 (74)
Q Consensus 22 ~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~ 70 (74)
-|||+-|..+.|.+ |.+|+..|+...-+..|..|++.||..|.-+
T Consensus 83 nnaYLNFLReFRrk----h~~L~p~dlI~~AAraW~rLSe~eK~rYrr~ 127 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCGLSPQDLIQRAARAWCRLSEAEKNRYRRM 127 (183)
T ss_pred chHHHHHHHHHHHH----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 58999998888774 8999999999999999999999999999874
No 20
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.93 E-value=0.003 Score=43.55 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=40.6
Q ss_pred CCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC
Q psy5107 15 PNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKS 60 (74)
Q Consensus 15 ~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s 60 (74)
|.+-.|-++||-.|.++.=++|++.||++++.|.=+..+..|...+
T Consensus 119 PEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 119 PEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred ccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 3344566999999999999999999999999999999999998654
No 21
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=93.13 E-value=0.048 Score=38.81 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=50.3
Q ss_pred CCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHH
Q psy5107 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQ 70 (74)
Q Consensus 17 ~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~ 70 (74)
.+++|...|+-+....|+.+...+|+-.-.++++.+|..|+.++..-|.+|++.
T Consensus 143 ~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~ 196 (211)
T COG5648 143 PNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDK 196 (211)
T ss_pred CCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHH
Confidence 567889999999999999999999999999999999999999999999999864
No 22
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=92.98 E-value=0.28 Score=32.19 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=40.4
Q ss_pred CCCCC-CCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCC
Q psy5107 15 PNHIK-RPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSN 61 (74)
Q Consensus 15 ~~~pK-RP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~ 61 (74)
..||- |-.-||--|.-.+=+.|+++||+|.-+++-.+|-.+|..-++
T Consensus 69 drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 69 DRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 34654 555899999999999999999999999999999999987654
No 23
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=88.50 E-value=2.1 Score=26.49 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=41.3
Q ss_pred CCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 18 IKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 18 pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
|.-|-++==+|-+.......+.++.-...+. +.++..|..|++.||-+.+--+
T Consensus 4 PE~PKt~qe~Wqq~vi~dYla~~~~dr~K~~-kam~~~W~~me~Kekl~WIkKA 56 (85)
T PF14887_consen 4 PETPKTAQEIWQQSVIGDYLAKFRNDRKKAL-KAMEAQWSQMEKKEKLKWIKKA 56 (85)
T ss_dssp S----THHHHHHHHHHHHHHHHTTSTHHHHH-HHHHHHHHTTGGGHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHhhhhhhhHHHHHH
Confidence 4556777788999888888888998887774 4999999999999999887544
No 24
>KOG3223|consensus
Probab=83.09 E-value=0.99 Score=32.18 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=40.7
Q ss_pred CCC-CCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCC
Q psy5107 16 NHI-KRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSN 61 (74)
Q Consensus 16 ~~p-KRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~ 61 (74)
.|| ||-.-||--|-..+-++|+.+||++..++.-.+|-.+|..-+|
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPD 208 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPD 208 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCC
Confidence 454 6777889999999999999999999999999999999987665
No 25
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=77.13 E-value=1.8 Score=29.82 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=27.9
Q ss_pred CCCCHHHHHH-HHHHHhhcCCCCcchhHHHHhh
Q psy5107 41 PDMHNAEISK-RLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 41 P~~~~~eisk-~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
|-.++..||+ .||.-|+..|++++.-|.+...
T Consensus 62 ~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~ 94 (198)
T TIGR03481 62 EAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFR 94 (198)
T ss_pred HhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHH
Confidence 5678999987 7999999999999999988654
No 26
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=74.51 E-value=2.8 Score=29.17 Aligned_cols=32 Identities=6% Similarity=-0.161 Sum_probs=28.0
Q ss_pred CCCCHHHHHH-HHHHHhhcCCCCcchhHHHHhh
Q psy5107 41 PDMHNAEISK-RLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 41 P~~~~~eisk-~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
|..++..||+ .||.-|+..|.+++.-|.+...
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~ 98 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPAQREAYFAAFR 98 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHH
Confidence 8889999987 7899999999999999887653
No 27
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=70.80 E-value=16 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=26.3
Q ss_pred chhHhHhHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy5107 23 NAFMVWSQMERRKICEVQPDMHNAEISKRLAL 54 (74)
Q Consensus 23 nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~ 54 (74)
|-|.-|-+..+..+++..|+++..+|..++..
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEK 40 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 67888999999999999999999999988865
No 28
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=61.34 E-value=10 Score=19.74 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=15.2
Q ss_pred HHhCCCCCHHHHHHHHHHHhh
Q psy5107 37 CEVQPDMHNAEISKRLALLSL 57 (74)
Q Consensus 37 ~~~~P~~~~~eisk~lg~~W~ 57 (74)
-.++|.++..||++.+|-.+.
T Consensus 12 l~~~~~~t~~ela~~~~is~~ 32 (48)
T PF13412_consen 12 LRENPRITQKELAEKLGISRS 32 (48)
T ss_dssp HHHCTTS-HHHHHHHHTS-HH
T ss_pred HHHcCCCCHHHHHHHhCCCHH
Confidence 346899999999999975443
No 29
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=58.52 E-value=5.5 Score=23.63 Aligned_cols=19 Identities=26% Similarity=0.072 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHhhcC
Q psy5107 41 PDMHNAEISKRLALLSLYK 59 (74)
Q Consensus 41 P~~~~~eisk~lg~~W~~~ 59 (74)
|++....|++.||.-|+.+
T Consensus 3 ~~~~l~~ia~~lG~dW~~L 21 (84)
T cd08317 3 ADIRLADISNLLGSDWPQL 21 (84)
T ss_pred ccchHHHHHHHHhhHHHHH
Confidence 5778899999999999874
No 30
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=58.16 E-value=20 Score=19.06 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCCCCH------HHHHHHHHHHhhcCCCCc
Q psy5107 29 SQMERRKICEVQPDMHN------AEISKRLALLSLYKSNGF 63 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~------~eisk~lg~~W~~~s~~E 63 (74)
.+..|..++.-||+... .+....|.+.|..|+++.
T Consensus 19 k~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 19 KKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 45567788888998865 467778888888888765
No 31
>PRK10236 hypothetical protein; Provisional
Probab=57.77 E-value=7.3 Score=28.28 Aligned_cols=25 Identities=4% Similarity=-0.189 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 48 ISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 48 isk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.++++..|..||++|+.-|.+++.
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~ 142 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVD 142 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 4899999999999999999988763
No 32
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=57.37 E-value=9.3 Score=21.01 Aligned_cols=24 Identities=17% Similarity=-0.093 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 44 HNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 44 ~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+..||. .|..|++.||.-..+.|.
T Consensus 23 T~dEI~-----~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 23 TLDEIR-----DWKSMSDDERRAILARLR 46 (51)
T ss_pred cHHHHH-----HHhhCCHHHHHHHHHHHH
Confidence 345665 899999999999888775
No 33
>PRK14279 chaperone protein DnaJ; Provisional
Probab=55.12 E-value=19 Score=27.29 Aligned_cols=39 Identities=18% Similarity=0.056 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.+. .+.-+.|.+.+..|||++|+.-
T Consensus 27 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~ 70 (392)
T PRK14279 27 KKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKE 70 (392)
T ss_pred HHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhH
Confidence 34668888889998852 4666789999999999999854
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=54.62 E-value=29 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHHHH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLAEQ 70 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~e~ 70 (74)
.+.+|+..++-||+.. ..+.-+.+.+.|..|++++|.....+
T Consensus 22 k~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 22 KTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3466888888899875 56777899999999999998865543
No 35
>PRK14285 chaperone protein DnaJ; Provisional
Probab=51.15 E-value=31 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|+..++-||+... .+.=+.+.+.|..|+|++|+-..
T Consensus 21 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~y 65 (365)
T PRK14285 21 KKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65 (365)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHH
Confidence 35678888999999852 35567889999999999987543
No 36
>PRK14299 chaperone protein DnaJ; Provisional
Probab=50.56 E-value=29 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.. ..+.-+.+.+.|..|++++|.-.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~ 64 (291)
T PRK14299 22 KKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64 (291)
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4566888888899876 34667889999999999987743
No 37
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=50.02 E-value=32 Score=22.40 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHhCCCCCH--------------HHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 35 KICEVQPDMHN--------------AEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 35 ~i~~~~P~~~~--------------~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.|-.+||+++. -|+.-+|+.-|......|..-|+++..
T Consensus 49 ~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~ 100 (113)
T PF12290_consen 49 AVCEQNPELEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAFIEEFI 100 (113)
T ss_pred HHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45667888874 467889999999999999999988753
No 38
>PRK14291 chaperone protein DnaJ; Provisional
Probab=48.80 E-value=29 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.+ ..+.=+.|.+.|..||+++|+..
T Consensus 21 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~ 63 (382)
T PRK14291 21 KKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63 (382)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3566888888899976 34566789999999999998754
No 39
>PRK14281 chaperone protein DnaJ; Provisional
Probab=47.97 E-value=27 Score=26.41 Aligned_cols=39 Identities=18% Similarity=0.019 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+.+|+..++-||+... .+.-+.|.+.|..|++++|...
T Consensus 21 kkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~ 64 (397)
T PRK14281 21 KKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRR 64 (397)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 45778888899999863 4677899999999999987643
No 40
>PRK14296 chaperone protein DnaJ; Provisional
Probab=47.83 E-value=35 Score=25.66 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 30 QMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
+..|+..++-||+.+ ..+-=+.|.+.+..|||++|+...
T Consensus 23 ~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~Y 65 (372)
T PRK14296 23 QAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQY 65 (372)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhh
Confidence 456777788888875 335556789999999999998543
No 41
>PHA03102 Small T antigen; Reviewed
Probab=47.49 E-value=27 Score=23.54 Aligned_cols=37 Identities=24% Similarity=0.155 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcCCCCcch
Q psy5107 29 SQMERRKICEVQPDMH-NAEISKRLALLSLYKSNGFNW 65 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~-~~eisk~lg~~W~~~s~~Ek~ 65 (74)
.+..|...+.-||+.. +.+.-+.|++.|..++++.+.
T Consensus 25 KkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r 62 (153)
T PHA03102 25 RKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKS 62 (153)
T ss_pred HHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHh
Confidence 4567888899999986 566778899999988876654
No 42
>PRK14283 chaperone protein DnaJ; Provisional
Probab=46.68 E-value=35 Score=25.60 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++.||+.+ ..+.-+.+.+.+..|+|++|.-.
T Consensus 23 k~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~ 65 (378)
T PRK14283 23 KKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65 (378)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHH
Confidence 4567888888999985 45677889999999999998643
No 43
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=46.57 E-value=35 Score=26.31 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 28 WSQMERRKICEVQPDMH-NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 28 f~~~~R~~i~~~~P~~~-~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
-.+..|+..++-||+.. ..+.=+.|.+.+..|||++|+-.
T Consensus 45 IKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~ 85 (421)
T PTZ00037 45 IKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKI 85 (421)
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHH
Confidence 45678999999999986 34677789999999999998743
No 44
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=45.55 E-value=20 Score=19.45 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhCCCCC--HH----HHHHHHHHHhhcCCCCcch
Q psy5107 29 SQMERRKICEVQPDMH--NA----EISKRLALLSLYKSNGFNW 65 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~--~~----eisk~lg~~W~~~s~~Ek~ 65 (74)
.+..+..++.-||+.. .. +....|.+.|..|+++++.
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 18 KKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 4566788888899884 33 7888999999999888775
No 45
>PRK14280 chaperone protein DnaJ; Provisional
Probab=44.91 E-value=39 Score=25.34 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.+ ..+.-+.|.+.|..|++++|.-.
T Consensus 22 k~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 64 (376)
T PRK14280 22 KKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64 (376)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHH
Confidence 4566777778888865 45777889999999999998643
No 46
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=44.79 E-value=17 Score=24.51 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=16.3
Q ss_pred HHHhCCCCCHHHHHHHHHH
Q psy5107 36 ICEVQPDMHNAEISKRLAL 54 (74)
Q Consensus 36 i~~~~P~~~~~eisk~lg~ 54 (74)
|...||+++..+|+|++|.
T Consensus 77 lvk~hPel~DaQI~kLiGT 95 (140)
T PF06242_consen 77 LVKNHPELSDAQIAKLIGT 95 (140)
T ss_pred HHhcCCcccHHHHHHHhcC
Confidence 4457899999999999985
No 47
>KOG0713|consensus
Probab=44.54 E-value=40 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCC-----HHHHHHHHHHHhhcCCCCcchh
Q psy5107 30 QMERRKICEVQPDMH-----NAEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~-----~~eisk~lg~~W~~~s~~Ek~~ 66 (74)
+..|+...+-||+-+ ..+-=+.|+..|..|||+||+.
T Consensus 35 kAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 35 KAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 456888888888876 4556677888999999999985
No 48
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=43.33 E-value=8.4 Score=25.33 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=25.7
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCCCcchhHHHHhh
Q psy5107 40 QPDMHNAEISK-RLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 40 ~P~~~~~eisk-~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.|-+++..|++ .||.-|+.+|++++.-|.+...
T Consensus 35 ~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~ 68 (170)
T PF05494_consen 35 DPYFDFERMARRVLGRYWRKASPAQRQRFVEAFK 68 (170)
T ss_dssp GGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHH
Confidence 37888888876 5899999999999999987653
No 49
>PRK14276 chaperone protein DnaJ; Provisional
Probab=42.14 E-value=46 Score=24.98 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.+ ..+.-+.|.+.|..|++++|+-.
T Consensus 22 k~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 64 (380)
T PRK14276 22 KKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64 (380)
T ss_pred HHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhh
Confidence 3466777788888865 45677899999999999998743
No 50
>PRK14295 chaperone protein DnaJ; Provisional
Probab=41.86 E-value=48 Score=25.06 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhCCCCC-----HHHHHHHHHHHhhcCCCCcchhHHHH
Q psy5107 29 SQMERRKICEVQPDMH-----NAEISKRLALLSLYKSNGFNWLLAEQ 70 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~-----~~eisk~lg~~W~~~s~~Ek~~~~e~ 70 (74)
.+..|+..++-||+.. ..+.-+.|.+.|..|++++|+-...+
T Consensus 27 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 27 KKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred HHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4566888888899875 34677899999999999998765443
No 51
>PRK14290 chaperone protein DnaJ; Provisional
Probab=41.51 E-value=49 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.056 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCCCH------HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN------AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~------~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++.||+.+. .+.-+.|.+.|..|+++++...
T Consensus 21 k~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (365)
T PRK14290 21 KKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65 (365)
T ss_pred HHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhh
Confidence 34668888888999862 2556789999999999987643
No 52
>PRK14286 chaperone protein DnaJ; Provisional
Probab=39.68 E-value=51 Score=24.75 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCCCC-----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH-----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~-----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.+ ..+.-+.+.+.+..|+|++|+-.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 65 (372)
T PRK14286 22 KSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65 (372)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4567888888999985 24677889999999999998743
No 53
>PRK14284 chaperone protein DnaJ; Provisional
Probab=39.47 E-value=44 Score=25.19 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhHHH
Q psy5107 30 QMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLLAE 69 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~~e 69 (74)
+..|+..++-||+... .+.-+.+.+.+..|++++|+-...
T Consensus 20 kayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 64 (391)
T PRK14284 20 KAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYD 64 (391)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4568888888999863 457789999999999999875443
No 54
>PRK14294 chaperone protein DnaJ; Provisional
Probab=39.43 E-value=48 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+... .+.-+.+.+.|..|++++++..
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 22 KKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred HHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 35668888888998863 3566788999999999998754
No 55
>PRK14297 chaperone protein DnaJ; Provisional
Probab=38.93 E-value=55 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchh
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~ 66 (74)
.+..|+..++-||+.+. .+.-+.|.+.+..|++++|+-
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 22 KKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 34667888888998862 467789999999999998774
No 56
>PRK14287 chaperone protein DnaJ; Provisional
Probab=38.54 E-value=59 Score=24.40 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|+..++-||+.+ ..+.-+.+.+.+..|+|++|....
T Consensus 22 k~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~Y 65 (371)
T PRK14287 22 KKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHY 65 (371)
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHH
Confidence 3456777778888875 345667899999999999987543
No 57
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=37.48 E-value=12 Score=24.51 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=9.7
Q ss_pred CCCchhHhHhHH
Q psy5107 20 RPMNAFMVWSQM 31 (74)
Q Consensus 20 RP~nAfmlf~~~ 31 (74)
-|||+||+|+-.
T Consensus 27 ipMn~FMmyMsG 38 (124)
T PF06417_consen 27 IPMNLFMMYMSG 38 (124)
T ss_pred hhHHHHHHHHhC
Confidence 489999998654
No 58
>PRK14288 chaperone protein DnaJ; Provisional
Probab=36.46 E-value=64 Score=24.16 Aligned_cols=40 Identities=18% Similarity=0.020 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|+..++-||+.+. .+-=+.+.+.+..|++++|+...
T Consensus 21 kkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~Y 65 (369)
T PRK14288 21 KKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALY 65 (369)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 45678888889999863 34556788899999999987543
No 59
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=35.76 E-value=67 Score=16.51 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCC
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSN 61 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~ 61 (74)
.+..|..++.-||+... .+....|.+.|..|++
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 18 KKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 35668888889998864 4556677777776654
No 60
>PRK14278 chaperone protein DnaJ; Provisional
Probab=35.14 E-value=65 Score=24.21 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchh
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~ 66 (74)
.+.+|+..++-||+.. ..+.=+.|.+.+..|++++|..
T Consensus 21 k~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 21 KRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence 3466788888889885 3345567999999999998764
No 61
>KOG0715|consensus
Probab=34.98 E-value=57 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchh
Q psy5107 32 ERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 32 ~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~ 66 (74)
.+...++-||+.+ ..+..+.+.+.+..|+++||.-
T Consensus 64 f~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 64 FRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred HHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 3555666667665 6777888899999999999874
No 62
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=34.20 E-value=40 Score=17.49 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHhCCCC-CHHHHHHHHHHHhhc
Q psy5107 28 WSQMERRKICEVQPDM-HNAEISKRLALLSLY 58 (74)
Q Consensus 28 f~~~~R~~i~~~~P~~-~~~eisk~lg~~W~~ 58 (74)
+....+..|....-+. ++++|++.+|-.|..
T Consensus 12 ~T~~~~~~i~~~~~~~~s~~~vA~~~~vs~~T 43 (52)
T PF13542_consen 12 ITKRLEQYILKLLRESRSFKDVARELGVSWST 43 (52)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHCCCHHH
Confidence 3444555566666555 999999999988865
No 63
>KOG0493|consensus
Probab=34.14 E-value=72 Score=24.07 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=16.1
Q ss_pred ccCCCCCCCCCCCchhHhHhHHHHHHHHHhC
Q psy5107 10 TKKNNPNHIKRPMNAFMVWSQMERRKICEVQ 40 (74)
Q Consensus 10 ~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~ 40 (74)
+++...+..|||.+||- -++-.+|+.++
T Consensus 238 kkk~~~~eeKRPRTAFt---aeQL~RLK~EF 265 (342)
T KOG0493|consen 238 KKKSSSKEEKRPRTAFT---AEQLQRLKAEF 265 (342)
T ss_pred ccCCccchhcCcccccc---HHHHHHHHHHH
Confidence 33334556899999974 33444444443
No 64
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=34.04 E-value=18 Score=20.70 Aligned_cols=20 Identities=20% Similarity=-0.070 Sum_probs=15.3
Q ss_pred HHHHhhcCCCCcchhHHHHh
Q psy5107 52 LALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 52 lg~~W~~~s~~Ek~~~~e~~ 71 (74)
-|..|+.|+++||.-+++-+
T Consensus 13 a~~ly~~l~~~er~~lv~ni 32 (68)
T PF06628_consen 13 ARDLYRVLSDEERERLVENI 32 (68)
T ss_dssp HHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH
Confidence 46788888888888877644
No 65
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=33.95 E-value=24 Score=20.56 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 45 NAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 45 ~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
...|+---|..|+.|++...+.+.|..
T Consensus 3 ~~~IG~nAG~Vw~~L~~~~~~s~~el~ 29 (65)
T PF10771_consen 3 KENIGENAGKVWQLLNENGEWSVSELK 29 (65)
T ss_dssp HHHHHHHHHHHHHHHCCSSSEEHHHHH
T ss_pred hhHHHHHHHHHHHHHhhCCCcCHHHHH
Confidence 456888899999999998888887753
No 66
>PF15581 Imm35: Immunity protein 35
Probab=33.77 E-value=45 Score=20.97 Aligned_cols=29 Identities=3% Similarity=-0.236 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 44 HNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 44 ~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+...+..++...||.|+.++=.-=+|+.+
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~kl~ava 59 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLYKLEAVA 59 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46678889999999999987666666544
No 67
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=33.44 E-value=77 Score=23.37 Aligned_cols=39 Identities=15% Similarity=0.010 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.. ..+.-+.|.+.+..|++++++.-
T Consensus 18 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 60 (354)
T TIGR02349 18 KKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60 (354)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHh
Confidence 4566777888899886 34677789999999999987753
No 68
>PRK14298 chaperone protein DnaJ; Provisional
Probab=33.31 E-value=68 Score=24.16 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 30 QMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
+..|+..++-||+.+ ..+-=+.|.+.+..|++++|+-.
T Consensus 24 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~ 65 (377)
T PRK14298 24 KAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65 (377)
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhh
Confidence 456777778888875 23445688899999999998643
No 69
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=33.03 E-value=39 Score=20.27 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=17.1
Q ss_pred cCCCCCCCCCCCchhHhHhHH
Q psy5107 11 KKNNPNHIKRPMNAFMVWSQM 31 (74)
Q Consensus 11 kk~~~~~pKRP~nAfmlf~~~ 31 (74)
+...+++|--||.-||++.+.
T Consensus 25 r~~K~GfpdepmrE~ml~l~~ 45 (75)
T PF15076_consen 25 RPRKPGFPDEPMREYMLHLQA 45 (75)
T ss_pred CCCCCCCCcchHHHHHHHHHH
Confidence 344678899999999999874
No 70
>PRK14282 chaperone protein DnaJ; Provisional
Probab=32.70 E-value=62 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCCCCCH------HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN------AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~------~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.+. .+.-+.+.+....|+|++|+.-
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 66 (369)
T PRK14282 22 KRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66 (369)
T ss_pred HHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHH
Confidence 45678888888999853 3466778888999999998754
No 71
>PRK14277 chaperone protein DnaJ; Provisional
Probab=32.41 E-value=80 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|+..++-||+.+. .+.-+.|.+.+..|++++|....
T Consensus 23 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~y 67 (386)
T PRK14277 23 KKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQY 67 (386)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45678888888998852 35678999999999999987543
No 72
>PRK14292 chaperone protein DnaJ; Provisional
Probab=30.91 E-value=93 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 30 QMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
+..|+..++.||+.. ..+.-+.|.+....|++++++-..
T Consensus 21 ~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~y 63 (371)
T PRK14292 21 SAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHY 63 (371)
T ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhH
Confidence 466788888899876 456667888899999999876443
No 73
>KOG1827|consensus
Probab=30.57 E-value=2.2 Score=34.73 Aligned_cols=44 Identities=16% Similarity=-0.045 Sum_probs=39.7
Q ss_pred CCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcc
Q psy5107 21 PMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFN 64 (74)
Q Consensus 21 P~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek 64 (74)
-..+|+.|..+.+..+..+||+..+++++.+.|..|..+++.-|
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTVGFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCcccceeEEeecCCcccCccccc
Confidence 45789999999999999999999999999999999999885433
No 74
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=30.07 E-value=60 Score=16.93 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHhCCCCCHHHHHHHHH
Q psy5107 36 ICEVQPDMHNAEISKRLA 53 (74)
Q Consensus 36 i~~~~P~~~~~eisk~lg 53 (74)
+-+.++..++.+|+..+|
T Consensus 11 ~Lq~d~r~s~~~la~~lg 28 (42)
T PF13404_consen 11 LLQEDGRRSYAELAEELG 28 (42)
T ss_dssp HHHH-TTS-HHHHHHHHT
T ss_pred HHHHcCCccHHHHHHHHC
Confidence 345678899999999886
No 75
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=29.13 E-value=1.2e+02 Score=17.45 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=17.6
Q ss_pred CCchhHhHhHHHHHHHHHhCCCCC
Q psy5107 21 PMNAFMVWSQMERRKICEVQPDMH 44 (74)
Q Consensus 21 P~nAfmlf~~~~R~~i~~~~P~~~ 44 (74)
|.+|+=.+..+.-++|...+|++.
T Consensus 2 p~ga~~AL~~EL~kRl~~~yPd~~ 25 (65)
T PF06183_consen 2 PAGALEALESELTKRLHRQYPDAE 25 (65)
T ss_dssp -TTHHHHHHHHHHHHHHHH-SS-E
T ss_pred CccHHHHHHHHHHHHHHHHCCCce
Confidence 567777788888999999999875
No 76
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=99 Score=23.80 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchh
Q psy5107 30 QMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~ 66 (74)
+..|+..++-||+.+. .|-=|.+.+.-..|||+||+-
T Consensus 23 kAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 23 KAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4568888888888874 344566777778899999974
No 77
>PRK10767 chaperone protein DnaJ; Provisional
Probab=28.70 E-value=1.1e+02 Score=22.85 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+... .+.-+.+.+.|..|++++++.-
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (371)
T PRK10767 22 KKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAA 65 (371)
T ss_pred HHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 34668888888999852 3566789999999999998654
No 78
>PRK14293 chaperone protein DnaJ; Provisional
Probab=28.63 E-value=97 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchh
Q psy5107 28 WSQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 28 f~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~ 66 (74)
-.+..|+..++-||+.. ..+.-+.|.+.|..|++++++.
T Consensus 20 ik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 20 LKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred HHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 34566777788888865 4566678899999999988764
No 79
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=28.60 E-value=70 Score=18.39 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.1
Q ss_pred CchhHhHhHHHHHHHHHhCCCCCHHHHHHHHH
Q psy5107 22 MNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53 (74)
Q Consensus 22 ~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg 53 (74)
-.||.+| ...+-.+...||+..||
T Consensus 10 dkA~e~y--------~~~~g~i~lkdIA~~Lg 33 (60)
T PF10668_consen 10 DKAFEIY--------KESNGKIKLKDIAEKLG 33 (60)
T ss_pred HHHHHHH--------HHhCCCccHHHHHHHHC
Confidence 3578888 22456778888888887
No 80
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=28.54 E-value=21 Score=21.64 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhhcC
Q psy5107 42 DMHNAEISKRLALLSLYK 59 (74)
Q Consensus 42 ~~~~~eisk~lg~~W~~~ 59 (74)
++....|+..||..|+.+
T Consensus 4 ~~~l~~Ia~~LG~dW~~L 21 (84)
T cd08805 4 EMKMAVIREHLGLSWAEL 21 (84)
T ss_pred hhHHHHHHHHhcchHHHH
Confidence 455788999999999875
No 81
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=27.25 E-value=53 Score=19.56 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=22.9
Q ss_pred HHHHHhCCCCCHHHH----HHHHHHHhhcCCCCcchhHHHHh
Q psy5107 34 RKICEVQPDMHNAEI----SKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 34 ~~i~~~~P~~~~~ei----sk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
-+|++.+++.+..-+ +-+-|-.|..+++++|.-+.+++
T Consensus 40 ~~Lk~~~~~~~~~~L~aL~gAi~g~~~~~L~~~~K~~L~~~~ 81 (81)
T PF04994_consen 40 LRLKASGPSVCLNLLYALEGAIQGIHWADLPDEEKQELLEWF 81 (81)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTS-GGGS-HHHHHHHHH--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHcCCCHHHCCHHHHHHHHhcC
Confidence 367777888875544 44556679999999999887764
No 82
>KOG3318|consensus
Probab=26.68 E-value=25 Score=24.51 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.6
Q ss_pred CCCchhHhHhHH
Q psy5107 20 RPMNAFMVWSQM 31 (74)
Q Consensus 20 RP~nAfmlf~~~ 31 (74)
-|||.||+|+..
T Consensus 71 iPMN~FmmYMaG 82 (178)
T KOG3318|consen 71 IPMNLFMMYMAG 82 (178)
T ss_pred ccHHHHHHHHcC
Confidence 489999999653
No 83
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=25.70 E-value=34 Score=20.45 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhhcC
Q psy5107 42 DMHNAEISKRLALLSLYK 59 (74)
Q Consensus 42 ~~~~~eisk~lg~~W~~~ 59 (74)
++.-..|+..||..|+.+
T Consensus 4 ~~~l~~ia~~LG~dWk~L 21 (84)
T cd08804 4 EERLAVIADHLGFSWTEL 21 (84)
T ss_pred hhHHHHHHHHHhhhHHHH
Confidence 345678999999999875
No 84
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=25.36 E-value=41 Score=18.81 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhcC
Q psy5107 46 AEISKRLALLSLYK 59 (74)
Q Consensus 46 ~eisk~lg~~W~~~ 59 (74)
..|++.||..|+.+
T Consensus 3 ~~ia~~lg~~W~~l 16 (79)
T cd01670 3 DKLAKKLGKDWKKL 16 (79)
T ss_pred HHHHHHHhhHHHHH
Confidence 46888899999774
No 85
>PRK14301 chaperone protein DnaJ; Provisional
Probab=25.24 E-value=1.2e+02 Score=22.67 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+... .+.-+.+.+.|..|++++|+-.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 65 (373)
T PRK14301 22 KKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRAR 65 (373)
T ss_pred HHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhh
Confidence 35668888888998853 2355688889999999987643
No 86
>smart00351 PAX Paired Box domain.
Probab=24.16 E-value=1.3e+02 Score=19.01 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.6
Q ss_pred HHHhCCCCCHHHHHHHHHH
Q psy5107 36 ICEVQPDMHNAEISKRLAL 54 (74)
Q Consensus 36 i~~~~P~~~~~eisk~lg~ 54 (74)
+..+||+++..||...|.+
T Consensus 87 ~~~~~p~~t~~el~~~L~~ 105 (125)
T smart00351 87 YKQENPGIFAWEIRDRLLS 105 (125)
T ss_pred HHHHCCCCCHHHHHHHHHH
Confidence 5678999999999999875
No 87
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=24.15 E-value=54 Score=19.94 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.3
Q ss_pred HHHHHhCCCCCHHHHHHHH
Q psy5107 34 RKICEVQPDMHNAEISKRL 52 (74)
Q Consensus 34 ~~i~~~~P~~~~~eisk~l 52 (74)
..++.+||+++-.|++.++
T Consensus 46 a~lRl~~Pd~SL~EL~~~~ 64 (85)
T PF02650_consen 46 AELRLENPDASLKELGELL 64 (85)
T ss_dssp HHHHHH-TTS-HHHHHHTT
T ss_pred HHHHHHCccccHHHHHHHH
Confidence 3788899999999998776
No 88
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=23.98 E-value=1.1e+02 Score=18.20 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=21.6
Q ss_pred CCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy5107 20 RPMNAFMVWSQMERRKICEVQPDMHNAEISKRLAL 54 (74)
Q Consensus 20 RP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~ 54 (74)
|-.|+=+-|.-. =.++...||+++...|..+|-.
T Consensus 23 RSi~~QiE~War-iGr~~E~np~l~~~~I~~~l~~ 56 (72)
T PF11903_consen 23 RSINGQIEHWAR-IGRAAEDNPDLSYSFIEEMLLA 56 (72)
T ss_pred CCHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHH
Confidence 344444444222 1355678999999999888754
No 89
>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C.
Probab=23.19 E-value=49 Score=20.11 Aligned_cols=14 Identities=36% Similarity=0.722 Sum_probs=6.9
Q ss_pred CCCCCHHHHHHHHH
Q psy5107 40 QPDMHNAEISKRLA 53 (74)
Q Consensus 40 ~P~~~~~eisk~lg 53 (74)
.|-|+++|||++|-
T Consensus 7 ~~~MtN~Dl~RiIn 20 (80)
T PF14374_consen 7 RPKMTNADLSRIIN 20 (80)
T ss_dssp --S-S---HHHHHH
T ss_pred cchhccccHHHHhc
Confidence 36789999999985
No 90
>cd00243 Lysin-Sp18 Sp18 and Lysin from Archaegastropoda (marine mollusks of the families Halotidae and Trochidae) sperm. Both proteins play an important role in fertilization: sp18 mediates fusion between sperm and egg cell membrane, lysin dissolves the vitelline envelope surrounding the egg; they are believed to be a product of gene duplication and subsequent divergence.
Probab=22.90 E-value=84 Score=20.58 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=16.9
Q ss_pred chhHhHhHHHHHHHHHhCC---CCCHHHHHHHHHH
Q psy5107 23 NAFMVWSQMERRKICEVQP---DMHNAEISKRLAL 54 (74)
Q Consensus 23 nAfmlf~~~~R~~i~~~~P---~~~~~eisk~lg~ 54 (74)
+.||+|++. .|..-+= ..+.+-++..+|.
T Consensus 53 ~ny~~w~~k---~I~~lgR~p~~~dy~~~Gr~iGr 84 (122)
T cd00243 53 QNYMLWSKK---IIRKLGRPPNVKDYTRLGREIGR 84 (122)
T ss_pred HHHHHHHHH---HHHHhCCCCchhHHHHHHHHHhh
Confidence 567777554 4444442 3346777777775
No 91
>PRK14289 chaperone protein DnaJ; Provisional
Probab=22.39 E-value=1.8e+02 Score=21.83 Aligned_cols=37 Identities=22% Similarity=0.053 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchh
Q psy5107 30 QMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 30 ~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~ 66 (74)
+..|+..++-||+.+. .+.=+.+.+.|..|+++++..
T Consensus 24 ~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 24 KAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred HHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4567777888898863 345667888899999998876
No 92
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=22.01 E-value=3.1e+02 Score=20.97 Aligned_cols=34 Identities=21% Similarity=-0.021 Sum_probs=25.3
Q ss_pred HhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 38 EVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 38 ~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
...|.|+--|--.+-=.+|...|+-+++.|.|-+
T Consensus 245 r~kPtMtlEeGl~ra~qEW~~~SnfdRmifyema 278 (328)
T PF12881_consen 245 RLKPTMTLEEGLWRAVQEWQHTSNFDRMIFYEMA 278 (328)
T ss_pred hcCCCccHHHHHHHHHHHhhccccccHHHHHHHH
Confidence 3445555566656666789999999999999865
No 93
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=21.81 E-value=40 Score=18.47 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcchhHHHHhhc
Q psy5107 41 PDMHNAEISKRLALLSLYKSNGFNWLLAEQLFS 73 (74)
Q Consensus 41 P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~~ 73 (74)
|+++..|||+... .-+.=.+||+.-++++
T Consensus 16 p~~~Y~DIsr~e~----l~~~~~RWPLLaEl~~ 44 (44)
T PF10945_consen 16 PDINYIDISREER----LNQALQRWPLLAELAQ 44 (44)
T ss_pred CCccHHHHHHHHH----HHHHHHHChhHHHHhC
Confidence 8888888887653 2333457888877753
No 94
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=21.09 E-value=52 Score=19.67 Aligned_cols=15 Identities=27% Similarity=0.002 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhcC
Q psy5107 45 NAEISKRLALLSLYK 59 (74)
Q Consensus 45 ~~eisk~lg~~W~~~ 59 (74)
-..|+..||..|+.+
T Consensus 5 l~~ia~~LG~~Wk~l 19 (86)
T cd08779 5 LLSIAGRLGLDWQAI 19 (86)
T ss_pred HHHHHHHHhHHHHHH
Confidence 356899999999863
No 95
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.73 E-value=94 Score=19.91 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 33 RRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 33 R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
|+......-.+.+.++-|.+ ..|+++|..-+.+++
T Consensus 68 ~k~Ye~a~~~~~~~~lqkRl----e~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 68 RKDYEEAVDQLTNEELQKRL----EELSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HhCCHHHHHHHHHHh
Confidence 33344444455555666665 668999988877765
No 96
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=20.68 E-value=2.3e+02 Score=21.57 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=27.5
Q ss_pred chhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q psy5107 23 NAFMVWSQMERRKICEVQPDMHNAEISKRLALLS 56 (74)
Q Consensus 23 nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W 56 (74)
..-.+|+..=.+.++++||+++..+|.+.....+
T Consensus 120 ~~k~iYr~~S~~lv~~~hp~ws~~~v~~~A~~~F 153 (337)
T PF01630_consen 120 GSKDIYRNESIELVRQQHPDWSEKEVEKEAKKEF 153 (337)
T ss_dssp GGGHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999887766554
Done!