Query psy5107
Match_columns 74
No_of_seqs 100 out of 1021
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:27:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 8.7E-25 3E-29 133.2 7.1 65 8-72 11-75 (90)
2 2e6o_A HMG box-containing prot 99.9 1.2E-24 4.2E-29 131.7 7.0 65 8-72 8-72 (87)
3 1k99_A Upstream binding factor 99.9 1.3E-24 4.6E-29 134.8 7.0 64 9-72 2-65 (99)
4 1hme_A High mobility group pro 99.9 3.2E-24 1.1E-28 126.5 7.2 61 12-72 1-61 (77)
5 2co9_A Thymus high mobility gr 99.9 4E-24 1.4E-28 133.0 7.7 68 5-72 5-72 (102)
6 1hry_A Human SRY; DNA, DNA-bin 99.9 2.4E-24 8.3E-29 126.8 5.2 59 14-72 1-59 (76)
7 2crj_A SWI/SNF-related matrix- 99.9 1.4E-23 4.9E-28 128.1 7.9 61 12-72 2-62 (92)
8 2eqz_A High mobility group pro 99.9 1.2E-23 4.2E-28 126.9 7.4 66 7-72 5-72 (86)
9 2d7l_A WD repeat and HMG-box D 99.9 9.5E-24 3.2E-28 127.7 6.6 59 14-72 2-61 (81)
10 1i11_A Transcription factor SO 99.9 1.8E-23 6.1E-28 124.7 7.4 58 15-72 2-59 (81)
11 1j46_A SRY, sex-determining re 99.9 2.3E-23 8E-28 125.4 6.5 59 14-72 1-59 (85)
12 1cg7_A Protein (NON histone pr 99.9 4.5E-24 1.5E-28 130.7 2.4 67 6-72 9-75 (93)
13 3u2b_C Transcription factor SO 99.9 2.7E-23 9.3E-28 122.9 5.5 57 16-72 1-57 (79)
14 1wz6_A HMG-box transcription f 99.9 3.3E-23 1.1E-27 123.7 5.8 61 12-72 2-62 (82)
15 4a3n_A Transcription factor SO 99.9 2.6E-23 8.9E-28 120.5 5.0 57 16-72 1-57 (71)
16 2cs1_A PMS1 protein homolog 1; 99.9 5.6E-23 1.9E-27 125.5 6.7 61 12-72 2-62 (92)
17 3f27_D Transcription factor SO 99.9 3.9E-23 1.3E-27 123.3 5.6 59 14-72 3-61 (83)
18 1aab_A High mobility group pro 99.9 2.6E-23 9E-28 124.4 4.3 61 12-72 2-64 (83)
19 2lef_A LEF-1 HMG, protein (lym 99.9 1.1E-22 3.8E-27 122.5 6.3 57 16-72 1-57 (86)
20 2lhj_A High mobility group pro 99.9 1.7E-23 5.8E-28 128.8 2.4 65 8-72 13-79 (97)
21 1gt0_D Transcription factor SO 99.9 1.1E-22 3.9E-27 120.8 5.8 57 16-72 1-57 (80)
22 4euw_A Transcription factor SO 99.9 1.5E-22 5.2E-27 126.8 6.4 63 10-72 22-84 (106)
23 1wxl_A Single-strand recogniti 99.9 4E-22 1.4E-26 116.9 7.4 56 15-72 1-56 (73)
24 1ckt_A High mobility group 1 p 99.9 5.7E-22 1.9E-26 115.1 7.0 56 17-72 1-58 (71)
25 3nm9_A HMG-D, high mobility gr 99.9 7.9E-22 2.7E-26 115.7 7.2 55 16-72 2-56 (73)
26 2gzk_A Sex-determining region 99.8 4.1E-21 1.4E-25 125.9 6.8 64 9-72 80-143 (159)
27 2yrq_A High mobility group pro 99.8 5.9E-21 2E-25 126.9 7.6 64 9-72 93-156 (173)
28 2yrq_A High mobility group pro 99.8 1.5E-20 5.2E-25 124.9 7.1 66 7-72 5-72 (173)
29 2yuk_A Myeloid/lymphoid or mix 99.8 1.6E-22 5.4E-27 125.1 -2.9 61 8-72 13-75 (90)
30 1v64_A Nucleolar transcription 99.8 2.9E-20 1E-24 117.0 5.7 62 7-72 6-68 (108)
31 2cto_A Novel protein; high mob 99.8 1.2E-20 4.1E-25 117.0 3.0 60 11-72 4-66 (93)
32 3fgh_A Transcription factor A, 99.8 6.4E-20 2.2E-24 105.8 3.6 53 16-72 1-53 (67)
33 2gzk_A Sex-determining region 99.8 6.5E-19 2.2E-23 115.4 6.1 59 14-72 1-59 (159)
34 3tmm_A Transcription factor A, 99.8 2.8E-19 9.5E-24 124.9 3.5 61 12-72 36-96 (238)
35 1l8y_A Upstream binding factor 99.8 1.8E-18 6.2E-23 107.1 6.4 56 16-72 3-58 (91)
36 3tq6_A Transcription factor A, 99.7 6.3E-19 2.2E-23 121.5 4.5 59 14-72 6-64 (214)
37 1v63_A Nucleolar transcription 99.7 2.7E-18 9.2E-23 106.8 5.6 58 13-72 4-61 (101)
38 3tmm_A Transcription factor A, 99.6 1.7E-17 5.7E-22 115.9 -0.5 57 12-72 141-197 (238)
39 3tq6_A Transcription factor A, 99.6 9.9E-18 3.4E-22 115.5 -1.7 57 12-72 109-165 (214)
40 1hdj_A Human HSP40, HDJ-1; mol 64.9 9.4 0.00032 21.0 3.7 40 29-68 21-64 (77)
41 2yua_A Williams-beuren syndrom 61.9 13 0.00045 21.6 4.1 41 28-68 34-79 (99)
42 2och_A Hypothetical protein DN 58.4 7.3 0.00025 21.3 2.4 39 29-67 26-66 (73)
43 2o37_A Protein SIS1; HSP40, J- 58.1 14 0.00048 21.1 3.7 40 29-68 26-67 (92)
44 2dn9_A DNAJ homolog subfamily 55.1 7.4 0.00025 21.5 2.0 40 29-68 25-69 (79)
45 1bq0_A DNAJ, HSP40; chaperone, 51.2 8.1 0.00028 22.6 1.8 38 29-66 21-63 (103)
46 2ctp_A DNAJ homolog subfamily 50.6 11 0.00039 20.7 2.3 40 29-68 25-68 (78)
47 2qgu_A Probable signal peptide 50.0 5.3 0.00018 26.7 0.9 39 34-72 62-102 (211)
48 2l01_A Uncharacterized protein 48.6 8.9 0.00031 22.5 1.7 29 43-71 3-31 (77)
49 2ctw_A DNAJ homolog subfamily 47.5 23 0.00078 20.9 3.5 40 29-68 35-79 (109)
50 2cug_A Mkiaa0962 protein; DNAJ 47.2 22 0.00074 20.1 3.2 41 29-69 35-79 (88)
51 2ej7_A HCG3 gene; HCG3 protein 46.6 12 0.0004 20.8 2.0 40 29-68 27-72 (82)
52 2ctr_A DNAJ homolog subfamily 45.7 23 0.00078 20.0 3.2 40 29-68 25-68 (88)
53 2ctq_A DNAJ homolog subfamily 45.1 12 0.00041 22.3 2.0 39 29-67 38-81 (112)
54 2l6l_A DNAJ homolog subfamily 45.0 32 0.0011 21.3 4.0 37 29-65 28-75 (155)
55 2l02_A Uncharacterized protein 42.9 8.5 0.00029 22.8 1.0 29 43-71 1-29 (82)
56 2dmx_A DNAJ homolog subfamily 38.1 13 0.00046 21.1 1.3 40 29-68 27-72 (92)
57 2lgw_A DNAJ homolog subfamily 36.9 25 0.00085 20.5 2.4 40 29-68 20-65 (99)
58 1wjz_A 1700030A21RIK protein; 36.9 12 0.00041 21.2 1.0 39 29-67 34-83 (94)
59 2ys8_A RAB-related GTP-binding 36.3 19 0.00065 20.5 1.8 36 29-64 45-84 (90)
60 2qsa_A DNAJ homolog DNJ-2; J-d 35.6 9.2 0.00032 22.5 0.3 38 29-66 34-79 (109)
61 2p7v_B Sigma-70, RNA polymeras 33.8 48 0.0016 17.2 3.1 23 31-53 9-36 (68)
62 3apq_A DNAJ homolog subfamily 29.2 36 0.0012 21.3 2.4 39 29-67 20-63 (210)
63 1qbj_A Protein (double-strande 28.8 42 0.0014 19.0 2.4 29 25-53 4-38 (81)
64 3mhp_C TIC62_peptide, ferredox 27.8 15 0.00053 17.3 0.3 11 18-28 2-12 (26)
65 3ag7_A Putative uncharacterize 24.8 29 0.00098 20.7 1.2 35 29-63 58-104 (106)
66 3mkl_A HTH-type transcriptiona 24.3 68 0.0023 18.4 2.9 32 22-53 51-82 (120)
67 1n4c_A Auxilin; four helix bun 22.9 23 0.00078 23.5 0.5 37 29-65 135-179 (182)
68 3oou_A LIN2118 protein; protei 22.7 62 0.0021 18.2 2.4 31 23-53 51-81 (108)
69 3lsg_A Two-component response 22.7 63 0.0021 18.0 2.4 31 23-53 49-79 (103)
70 1ku3_A Sigma factor SIGA; heli 22.2 69 0.0024 16.8 2.4 23 31-53 14-41 (73)
71 3hho_A CO-chaperone protein HS 20.5 48 0.0016 21.2 1.7 38 29-66 24-71 (174)
72 1qgp_A Protein (double strande 20.1 52 0.0018 18.2 1.6 17 37-53 23-42 (77)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=8.7e-25 Score=133.24 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=61.3
Q ss_pred ccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 8 ~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.++++||++||||+||||+|++++|..|+.+||++++.|||++||++|+.|+++||.+|.+++.
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 75 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREA 75 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999998764
No 2
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=131.69 Aligned_cols=65 Identities=26% Similarity=0.280 Sum_probs=61.2
Q ss_pred ccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 8 ~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
..++++|+++||||+||||+|++++|..|+.+||++++.|||++||++|+.|+++||.+|.+++.
T Consensus 8 ~~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 72 (87)
T 2e6o_A 8 GTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAK 72 (87)
T ss_dssp SSCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999998864
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.91 E-value=1.3e-24 Score=134.80 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=61.0
Q ss_pred cccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 9 ATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 9 ~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+++++||++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 65 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQ 65 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999998764
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=3.2e-24 Score=126.54 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++||++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 61 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 61 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999998764
No 5
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=4e-24 Score=132.98 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCCccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 5 SPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 5 ~~~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
...+.++++||++||||+||||+|++++|..|+.+||++++.||+++||++|+.|+++||.+|.+++.
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 72 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTE 72 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34456677899999999999999999999999999999999999999999999999999999998764
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.90 E-value=2.4e-24 Score=126.77 Aligned_cols=59 Identities=37% Similarity=0.613 Sum_probs=55.4
Q ss_pred CCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 14 ~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
||++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 59 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQ 59 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998764
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.90 E-value=1.4e-23 Score=128.09 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+||++||||+||||+|++++|..|+.+||++++.|||++||++|+.||++||.+|.+.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 62 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAE 62 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999998764
No 8
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=126.90 Aligned_cols=66 Identities=21% Similarity=0.146 Sum_probs=61.1
Q ss_pred CccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 7 MRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMH--NAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 7 ~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~--~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+.++++||++||||+||||+|++++|..|+.+||+++ +.|||++||++|+.||++||.+|.+.+.
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 72 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 72 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35566789999999999999999999999999999997 6999999999999999999999998764
No 9
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=9.5e-24 Score=127.66 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=56.8
Q ss_pred CCCCCCCCCchhHhHhHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMH-NAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 14 ~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~-~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++++||||+||||+|++++|..|+.+||+++ ++|||++||++|+.|+++||.||.+.+.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~ 61 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAK 61 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6789999999999999999999999999998 9999999999999999999999999864
No 10
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=1.8e-23 Score=124.67 Aligned_cols=58 Identities=48% Similarity=0.578 Sum_probs=55.2
Q ss_pred CCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 15 PNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 15 ~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 59 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQA 59 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999998764
No 11
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.89 E-value=2.3e-23 Score=125.44 Aligned_cols=59 Identities=37% Similarity=0.613 Sum_probs=56.6
Q ss_pred CCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 14 ~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.|++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 59 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQ 59 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998764
No 12
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.88 E-value=4.5e-24 Score=130.72 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 6 PMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 6 ~~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
..+.++++|+++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 9 ~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 75 (93)
T 1cg7_A 9 KRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75 (93)
T ss_dssp CCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3345567899999999999999999999999999999999999999999999999999999998864
No 13
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=2.7e-23 Score=122.86 Aligned_cols=57 Identities=56% Similarity=0.748 Sum_probs=55.0
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++||||+||||+|++++|..|+.+||+++++|||++||++|+.|+++||.+|.+++.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 57 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAE 57 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999998864
No 14
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=3.3e-23 Score=123.72 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
..++++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 62 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAK 62 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999998764
No 15
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.88 E-value=2.6e-23 Score=120.45 Aligned_cols=57 Identities=39% Similarity=0.576 Sum_probs=51.6
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++||||+||||+|++++|+.|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 57 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAE 57 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999998764
No 16
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.6e-23 Score=125.45 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
..++++||||+||||+|++++|..|+.+||++++.|||++||++|+.|+++||.+|.+.+.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 62 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKAT 62 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999998764
No 17
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.88 E-value=3.9e-23 Score=123.33 Aligned_cols=59 Identities=37% Similarity=0.547 Sum_probs=53.6
Q ss_pred CCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 14 ~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+++||||+||||+|++++|..|+.+||+++++|||++||++|+.|+++||.+|.+++.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 61 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAE 61 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999998764
No 18
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=2.6e-23 Score=124.41 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMH--NAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~--~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++||++||||+||||+|++++|..|+.+||+++ +.|||++||++|+.||++||.+|.+.+.
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 64 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999997 5999999999999999999999998764
No 19
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.1e-22 Score=122.53 Aligned_cols=57 Identities=25% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 57 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELAR 57 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999998874
No 20
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.87 E-value=1.7e-23 Score=128.82 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=60.5
Q ss_pred ccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMH--NAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 8 ~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~--~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.++++||++||||+||||+|++++|..|+.+||+++ ++|||++||++|+.||++||.+|.+++.
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 79 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSD 79 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455679999999999999999999999999999999 9999999999999999999999988764
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.87 E-value=1.1e-22 Score=120.76 Aligned_cols=57 Identities=44% Similarity=0.637 Sum_probs=54.8
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++||||+||||+|++++|..|+.+||+++++|||++||++|+.||++||.+|.+++.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 57 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAK 57 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999998764
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=126.79 Aligned_cols=63 Identities=41% Similarity=0.618 Sum_probs=55.5
Q ss_pred ccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 10 TKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 10 ~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
...+++++||||+||||+|++++|+.|+.+||+++++|||++||++|+.|+++||.+|.+.+.
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 84 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAE 84 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999998764
No 23
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.87 E-value=4e-22 Score=116.93 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 15 PNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 15 ~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
|++||||+||||+|++++|..|+.+||+++++|||++||++|+.| +||.+|.+.+.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~ 56 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAA 56 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHH
Confidence 689999999999999999999999999999999999999999999 99999998764
No 24
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.86 E-value=5.7e-22 Score=115.11 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=53.1
Q ss_pred CCCCCCchhHhHhHHHHHHHHHhCCCCCH--HHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 17 HIKRPMNAFMVWSQMERRKICEVQPDMHN--AEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 17 ~pKRP~nAfmlf~~~~R~~i~~~~P~~~~--~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+||||+||||+|++++|..|+.+||++++ +|||++||++|+.||++||.||.+.+.
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 58 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 58 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 58999999999999999999999999975 999999999999999999999998764
No 25
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.86 E-value=7.9e-22 Score=115.67 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=52.7
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.||||+||||+|++++|+.|+.+||+++++||+++||++|+.|++ |.||.+.+.
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~ 56 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAA 56 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998 999998764
No 26
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.84 E-value=4.1e-21 Score=125.86 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 9 ATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 9 ~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.++.+||++||||+||||+|++++|..|+.+||+++++||+++||++|+.||++||.+|.+.+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~ 143 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 143 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999999999999999999999999999998764
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=126.89 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 9 ATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 9 ~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.++.+||++||||+||||+|++++|..|+.+||+++++||+++||++|+.||++||.+|.+++.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~ 156 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 156 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999999999999999999999999999998764
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=124.90 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=60.9
Q ss_pred CccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCC--CCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 7 MRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPD--MHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 7 ~~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~--~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+...++||++||||+||||+|++++|..|+.+||+ +++.|||++||++|+.||++||.+|.+.+.
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 72 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 72 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999 689999999999999999999999998764
No 29
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-22 Score=125.13 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=56.8
Q ss_pred ccccCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMH--NAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 8 ~~~kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~--~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.++++||+.||||+||||+||+++|++|+.+||+++ ++||| ++|+.|+++||.||.+.+.
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~ 75 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKAR 75 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHH
Confidence 3455679999999999999999999999999999999 99999 9999999999999998875
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=2.9e-20 Score=117.04 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=57.3
Q ss_pred CccccCCCCCCC-CCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 7 MRATKKNNPNHI-KRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 7 ~~~~kk~~~~~p-KRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+.++.+|+++| |||+||||+|++++|..|+ +++++||+++||++|+.|+++||.||.+.+.
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~ 68 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCD 68 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456778899999 9999999999999999987 8999999999999999999999999998764
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-20 Score=116.97 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=56.3
Q ss_pred cCCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHH---HHHhhcCCCCcchhHHHHhh
Q psy5107 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL---ALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 11 kk~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~l---g~~W~~~s~~Ek~~~~e~~~ 72 (74)
...++++||||+||||+|++++|++|+.+ +++++||+++| |++|+.|+++||.||.+.+.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~ 66 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAR 66 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678999999999999999999999998 89999999999 99999999999999998764
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.78 E-value=6.4e-20 Score=105.81 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=49.2
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
++||||+||||+|++++|..|+..|| +||+++||++|+.||++||.+|.+.+.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~ 53 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAK 53 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 57999999999999999999988776 799999999999999999999998764
No 33
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.76 E-value=6.5e-19 Score=115.35 Aligned_cols=59 Identities=37% Similarity=0.613 Sum_probs=56.2
Q ss_pred CCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 14 ~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+++||||+||||+|+++.|..|+.+||+++++|||++||++|+.||++||.+|.+.+.
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 59 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQ 59 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999998764
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.8e-19 Score=124.88 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
..+|++||||+||||+|++++|..|+++||+++++|||++||++|+.|+++||.+|.+.+.
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~ 96 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYR 96 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999998764
No 35
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.75 E-value=1.8e-18 Score=107.15 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=53.5
Q ss_pred CCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 16 ~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
+.||||++||++|+++.|..++.+||+ +++||||.||++|+.||+.||.||.+.+.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~ 58 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAA 58 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 689999999999999999999999999 99999999999999999999999988653
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=6.3e-19 Score=121.47 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 14 ~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.|++||||+||||+|++++|..|+++||+++++|||++||++|+.||++||.+|.+.+.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~ 64 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYR 64 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764
No 37
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.74 E-value=2.7e-18 Score=106.84 Aligned_cols=58 Identities=14% Similarity=-0.050 Sum_probs=50.1
Q ss_pred CCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 13 NNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 13 ~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
....+||||+||||+|+++++. ...++++++.||+++||++|+.|+++||.||.+.+.
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~ 61 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAE 61 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3457899999999999999975 334566889999999999999999999999998764
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.7e-17 Score=115.87 Aligned_cols=57 Identities=18% Similarity=0.033 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+|+++||||+||||+|++++|..|+.+||+ +|++.||++|+.|+++||.||.+++.
T Consensus 141 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~ 197 (238)
T 3tmm_A 141 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAK 197 (238)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4689999999999999999999998876664 99999999999999999999998764
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.63 E-value=9.9e-18 Score=115.48 Aligned_cols=57 Identities=18% Similarity=0.033 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCchhHhHhHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCcchhHHHHhh
Q psy5107 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 12 k~~~~~pKRP~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
.+|++.||||+||||+|++++|..|+.+||+ ||++.||++|+.|+++||.||.+++.
T Consensus 109 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~ 165 (214)
T 3tq6_A 109 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAK 165 (214)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3589999999999999999999998776664 99999999999999999999998764
No 40
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=64.94 E-value=9.4 Score=20.98 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+.. ..+..+.|.+.|..|+++++.-..
T Consensus 21 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 64 (77)
T 1hdj_A 21 KRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64 (77)
T ss_dssp HHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4566788888899875 578888999999999999876543
No 41
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.86 E-value=13 Score=21.56 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHhCCCCC-----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 28 WSQMERRKICEVQPDMH-----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 28 f~~~~R~~i~~~~P~~~-----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
-.+..|..+++-||+.. ..+.-+.|.+.|..|++++++...
T Consensus 34 Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 79 (99)
T 2yua_A 34 IKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79 (99)
T ss_dssp HHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 34567888899999986 367888999999999999887543
No 42
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=58.44 E-value=7.3 Score=21.29 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCCCH--HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN--AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~--~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|...+.-||+... .+.-+.|.+.|..|++++++--
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQI 66 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHH
Confidence 35667888888998863 5788899999999999987643
No 43
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=58.09 E-value=14 Score=21.12 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMH--NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~--~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+.. ..+.-+.|.+.|..|+++++.-..
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 67 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4567888899999985 567888999999999999887543
No 44
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.11 E-value=7.4 Score=21.49 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+... .+.-+.|.+.|..|++++++--.
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 69 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 45678888888998753 57788999999999998876543
No 45
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=51.15 E-value=8.1 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchh
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~ 66 (74)
.+..|+.+++-||+... .+.-+.|.+.|..|++++++-
T Consensus 21 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 63 (103)
T 1bq0_A 21 RKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63 (103)
T ss_dssp HHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 45667788888898753 467889999999999998764
No 46
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.55 E-value=11 Score=20.69 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+.. ..+.-+.|.+.|..|++++++--.
T Consensus 25 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 68 (78)
T 2ctp_A 25 KKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68 (78)
T ss_dssp HHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4566778888899985 467788899999999998876543
No 47
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=49.96 E-value=5.3 Score=26.66 Aligned_cols=39 Identities=3% Similarity=-0.049 Sum_probs=29.6
Q ss_pred HHHHHh-CCCCCHHHHHHH-HHHHhhcCCCCcchhHHHHhh
Q psy5107 34 RKICEV-QPDMHNAEISKR-LALLSLYKSNGFNWLLAEQLF 72 (74)
Q Consensus 34 ~~i~~~-~P~~~~~eisk~-lg~~W~~~s~~Ek~~~~e~~~ 72 (74)
..|... .|-.++..|++. ||.-|+.++.+++.-|.+...
T Consensus 62 ~~v~~~l~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~ 102 (211)
T 2qgu_A 62 QLVDQKIVPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFK 102 (211)
T ss_dssp HHHHHHTGGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHH
Confidence 344333 377788888765 699999999999999987643
No 48
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=48.60 E-value=8.9 Score=22.47 Aligned_cols=29 Identities=3% Similarity=-0.205 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 43 MHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 43 ~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
|+...|+-.-|..|+.|++...|.|.|..
T Consensus 3 M~k~~IG~nAG~VW~~L~~~~~~s~~el~ 31 (77)
T 2l01_A 3 MLKEKAGALAGQIWEALNGTEGLTQKQIK 31 (77)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCEEHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 56778999999999999998899988765
No 49
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.54 E-value=23 Score=20.93 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..+++-||+... .+.-+.|.+.|..|+++++.-..
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Y 79 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 45678888999999863 56788999999999998887543
No 50
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=47.17 E-value=22 Score=20.08 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHHH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLAE 69 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~e 69 (74)
.+..|..++.-||+.. ..+.-+.|.+.|..|++++++.-..
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 79 (88)
T 2cug_A 35 KKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79 (88)
T ss_dssp HHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4567888888899875 5678889999999999998765443
No 51
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.65 E-value=12 Score=20.80 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhCCCCCH------HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN------AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~------~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+... .+.-+.|.+.|..|++++++.-.
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 72 (82)
T 2ej7_A 27 KKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIY 72 (82)
T ss_dssp HHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 45667788888998763 35678899999999999887543
No 52
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.70 E-value=23 Score=19.98 Aligned_cols=40 Identities=10% Similarity=-0.050 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+.. ..+.-+.|.+.|..|++++++.-.
T Consensus 25 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 68 (88)
T 2ctr_A 25 KKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68 (88)
T ss_dssp HHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4567888889999976 356778899999999998876543
No 53
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.10 E-value=12 Score=22.27 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMHN-----AEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|...++-||+... .+.-+.|.+.|..|++++++--
T Consensus 38 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 81 (112)
T 2ctq_A 38 LAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81 (112)
T ss_dssp HHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 45678888889998763 6788899999999999987643
No 54
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=44.95 E-value=32 Score=21.34 Aligned_cols=37 Identities=14% Similarity=-0.019 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhCCCCCH-----------HHHHHHHHHHhhcCCCCcch
Q psy5107 29 SQMERRKICEVQPDMHN-----------AEISKRLALLSLYKSNGFNW 65 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~-----------~eisk~lg~~W~~~s~~Ek~ 65 (74)
.+..|+..+.-||+... .+..+.|.+.|..|+++.++
T Consensus 28 k~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R 75 (155)
T 2l6l_A 28 KQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETK 75 (155)
T ss_dssp HHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45678888899998752 37888999999999999876
No 55
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=42.95 E-value=8.5 Score=22.80 Aligned_cols=29 Identities=7% Similarity=-0.072 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchhHHHHh
Q psy5107 43 MHNAEISKRLALLSLYKSNGFNWLLAEQL 71 (74)
Q Consensus 43 ~~~~eisk~lg~~W~~~s~~Ek~~~~e~~ 71 (74)
|+...|+-..|..|+.|++...|.|.|..
T Consensus 1 M~k~~IG~nAG~VW~~L~~~~~~s~~el~ 29 (82)
T 2l02_A 1 MDKKIVGANAGKVWHALNEADGISIPELA 29 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCSBCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 34567888899999999988888888764
No 56
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.06 E-value=13 Score=21.07 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhCCCCCH------HHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMHN------AEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~------~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|..++.-||+... .+.-+.|.+.|..|+++.++--.
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 72 (92)
T 2dmx_A 27 KKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLY 72 (92)
T ss_dssp HHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 45668888888998752 46778899999999998876443
No 57
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=36.94 E-value=25 Score=20.51 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhCCCCC------HHHHHHHHHHHhhcCCCCcchhHH
Q psy5107 29 SQMERRKICEVQPDMH------NAEISKRLALLSLYKSNGFNWLLA 68 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~------~~eisk~lg~~W~~~s~~Ek~~~~ 68 (74)
.+..|+.++.-||+.. ..+..+.|.+.|..|+++++..-.
T Consensus 20 k~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~Y 65 (99)
T 2lgw_A 20 KKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIY 65 (99)
T ss_dssp HHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4566778888899876 346788999999999999876543
No 58
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=36.92 E-value=12 Score=21.22 Aligned_cols=39 Identities=13% Similarity=-0.090 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCCCCC-----------HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH-----------NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~-----------~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|..++.-||+.. ..+.-+.|.+.|..|+++++.--
T Consensus 34 k~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 83 (94)
T 1wjz_A 34 KQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKK 83 (94)
T ss_dssp HHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3566777888889984 34677889999999999987643
No 59
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.25 E-value=19 Score=20.55 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCCCcc
Q psy5107 29 SQMERRKICEVQPDMH----NAEISKRLALLSLYKSNGFN 64 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----~~eisk~lg~~W~~~s~~Ek 64 (74)
.+..|..+++-||+.. ..+.-+.|.+.|..|+++.+
T Consensus 45 k~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 84 (90)
T 2ys8_A 45 NKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 84 (90)
T ss_dssp HHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccc
Confidence 3567888888999875 56677788888887777655
No 60
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=35.60 E-value=9.2 Score=22.54 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCCCH--------HHHHHHHHHHhhcCCCCcchh
Q psy5107 29 SQMERRKICEVQPDMHN--------AEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~--------~eisk~lg~~W~~~s~~Ek~~ 66 (74)
.+..|+..+.-||+... .+..+.|.+.|..|+++.+.-
T Consensus 34 k~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 34 AKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp HHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 35678888888998653 477889999999999988763
No 61
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.85 E-value=48 Score=17.23 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHH
Q psy5107 31 MERRKICEVQ-----PDMHNAEISKRLA 53 (74)
Q Consensus 31 ~~R~~i~~~~-----P~~~~~eisk~lg 53 (74)
..|..|...+ .+++..||+..+|
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~lg 36 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQFD 36 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHC
Confidence 3455555555 7899999998876
No 62
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=29.16 E-value=36 Score=21.33 Aligned_cols=39 Identities=8% Similarity=-0.111 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhCCCCC-----HHHHHHHHHHHhhcCCCCcchhH
Q psy5107 29 SQMERRKICEVQPDMH-----NAEISKRLALLSLYKSNGFNWLL 67 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~-----~~eisk~lg~~W~~~s~~Ek~~~ 67 (74)
.+..|+..++-||+.. ..+.-+.|.+.+..|++++++--
T Consensus 20 k~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~ 63 (210)
T 3apq_A 20 RQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63 (210)
T ss_dssp HHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3566888888888875 35566788999999999887653
No 63
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.78 E-value=42 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=18.0
Q ss_pred hHhHhHHHHHHH---HHhCC---CCCHHHHHHHHH
Q psy5107 25 FMVWSQMERRKI---CEVQP---DMHNAEISKRLA 53 (74)
Q Consensus 25 fmlf~~~~R~~i---~~~~P---~~~~~eisk~lg 53 (74)
+|-.+.+...+| -.+++ .++..||++.||
T Consensus 4 ~~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 4 MLSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp --CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 444454444433 34566 889999999997
No 64
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=27.75 E-value=15 Score=17.26 Aligned_cols=11 Identities=9% Similarity=0.679 Sum_probs=8.6
Q ss_pred CCCCCchhHhH
Q psy5107 18 IKRPMNAFMVW 28 (74)
Q Consensus 18 pKRP~nAfmlf 28 (74)
..||++.|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 46888888766
No 65
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=24.85 E-value=29 Score=20.69 Aligned_cols=35 Identities=11% Similarity=-0.058 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCCCCH------------HHHHHHHHHHhhcCCCCc
Q psy5107 29 SQMERRKICEVQPDMHN------------AEISKRLALLSLYKSNGF 63 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~~------------~eisk~lg~~W~~~s~~E 63 (74)
.+..|+....-||+... .+.-+.|.+.|..|++++
T Consensus 58 KkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 58 RKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 45667788888887632 345578889999998876
No 66
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=24.31 E-value=68 Score=18.43 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=21.2
Q ss_pred CchhHhHhHHHHHHHHHhCCCCCHHHHHHHHH
Q psy5107 22 MNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53 (74)
Q Consensus 22 ~nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg 53 (74)
+..|+.-.+-.+..-.-.+++++..||+-.+|
T Consensus 51 ~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~G 82 (120)
T 3mkl_A 51 YSQLLTECRMQRALQLIVIHGFSIKRVAVSCG 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHC
Confidence 34555555545554444678999999988776
No 67
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=22.88 E-value=23 Score=23.46 Aligned_cols=37 Identities=19% Similarity=0.016 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhCCCCC--------HHHHHHHHHHHhhcCCCCcch
Q psy5107 29 SQMERRKICEVQPDMH--------NAEISKRLALLSLYKSNGFNW 65 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~--------~~eisk~lg~~W~~~s~~Ek~ 65 (74)
.+..|+.+..-||+.. ..++-+.|.+.|..|++++++
T Consensus 135 KkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR 179 (182)
T 1n4c_A 135 KKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179 (182)
T ss_dssp HHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhh
Confidence 3456788888888764 345777889999988887764
No 68
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.70 E-value=62 Score=18.20 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=19.8
Q ss_pred chhHhHhHHHHHHHHHhCCCCCHHHHHHHHH
Q psy5107 23 NAFMVWSQMERRKICEVQPDMHNAEISKRLA 53 (74)
Q Consensus 23 nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg 53 (74)
..|+.-.+-.+..-.-.+++++..||+-.+|
T Consensus 51 ~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~G 81 (108)
T 3oou_A 51 TDYLNRYRVNYAKEELLQTKDNLTIIAGKSG 81 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHcC
Confidence 4455544444444333468999999998776
No 69
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.69 E-value=63 Score=17.96 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=19.8
Q ss_pred chhHhHhHHHHHHHHHhCCCCCHHHHHHHHH
Q psy5107 23 NAFMVWSQMERRKICEVQPDMHNAEISKRLA 53 (74)
Q Consensus 23 nAfmlf~~~~R~~i~~~~P~~~~~eisk~lg 53 (74)
..|+.-.+-.+..-.-.+++++..||+-.+|
T Consensus 49 ~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~G 79 (103)
T 3lsg_A 49 QDYLLQKRMEKAKLLLLTTELKNYEIAEQVG 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHhC
Confidence 4455554544443333468999999988776
No 70
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.22 E-value=69 Score=16.81 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=15.9
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHH
Q psy5107 31 MERRKICEVQ-----PDMHNAEISKRLA 53 (74)
Q Consensus 31 ~~R~~i~~~~-----P~~~~~eisk~lg 53 (74)
..|..|...+ .+++..||+..+|
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l~ 41 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYFG 41 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHC
Confidence 3455554444 7899999998876
No 71
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=20.52 E-value=48 Score=21.21 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhCCCCC----------HHHHHHHHHHHhhcCCCCcchh
Q psy5107 29 SQMERRKICEVQPDMH----------NAEISKRLALLSLYKSNGFNWL 66 (74)
Q Consensus 29 ~~~~R~~i~~~~P~~~----------~~eisk~lg~~W~~~s~~Ek~~ 66 (74)
.+..|...+.-||+.. ..+....|.+.|..|+++.++-
T Consensus 24 k~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 24 SSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp HHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 4567888888899874 2357788999999999887654
No 72
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.07 E-value=52 Score=18.21 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.3
Q ss_pred HHhCC---CCCHHHHHHHHH
Q psy5107 37 CEVQP---DMHNAEISKRLA 53 (74)
Q Consensus 37 ~~~~P---~~~~~eisk~lg 53 (74)
..+++ .++..||++.||
T Consensus 23 L~~~~~~~~~t~~eLA~~Lg 42 (77)
T 1qgp_A 23 LEELGEGKATTAHDLSGKLG 42 (77)
T ss_dssp HHHHCSSSCEEHHHHHHHHC
T ss_pred HHHcCCCCCcCHHHHHHHHC
Confidence 66778 889999999987
Done!