RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5107
(74 letters)
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box
transcription factor 1, high mobility group box
transcription factor 1, structural genomics; NMR {Homo
sapiens}
Length = 87
Score = 76.7 bits (189), Expect = 1e-20
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 10 TKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+PN KRPMNAFM++++ R + ++ P N IS L
Sbjct: 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILG 53
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 90
Score = 76.3 bits (188), Expect = 2e-20
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 5 SPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
P + K KRP++A ++S+ +RR++ E +P++ +E+++ LA
Sbjct: 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLA 56
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX
domain, structural genomics, NPPSFA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
Length = 82
Score = 74.2 bits (183), Expect = 9e-20
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
+ +RPMNAF+++ + R + + P + N +K L
Sbjct: 4 GSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKIL 42
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain,
activator, DNA-binding, NUC transcription; HET: DNA;
2.77A {Homo sapiens}
Length = 106
Score = 74.7 bits (184), Expect = 1e-19
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 9 ATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
N H+KRPMNAFMVW+Q RRK+ + P +HNAE+SK L
Sbjct: 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTL 64
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein, DNA
sequence specific, testis determining.; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 81
Score = 73.4 bits (181), Expect = 1e-19
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
HIKRPMNAFMVW++ ERRKI + PDMHN+ ISK L
Sbjct: 3 PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKIL 39
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens}
Length = 71
Score = 73.0 bits (180), Expect = 2e-19
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
I+RPMNAFMVW++ ER+++ + PD+HNAE+SK L
Sbjct: 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKML 37
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA
complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1
PDB: 1hrz_A*
Length = 76
Score = 73.0 bits (180), Expect = 2e-19
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
+ +KRPMNAF+VWS+ +RRK+ P M N+EISK+L
Sbjct: 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQL 39
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain,
endodermal, activator, DNA- nucleus, transcription
regulation, transcrip complex; HET: DNA; 2.75A {Mus
musculus} PDB: 2yul_A
Length = 83
Score = 73.0 bits (180), Expect = 2e-19
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 14 NPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
+ I+RPMNAFMVW++ ER+++ + PD+HNAE+SK L
Sbjct: 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKML 41
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus
musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Length = 80
Score = 72.2 bits (178), Expect = 5e-19
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
+ +KRPMNAFMVWS+ +RRK+ + P MHN+EISKRL
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRL 37
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional
regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus
musculus}
Length = 79
Score = 71.8 bits (177), Expect = 6e-19
Identities = 32/36 (88%), Positives = 33/36 (91%)
Query: 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
HIKRPMNAFMVWSQ+ERRKI E PDMHNAEISKRL
Sbjct: 2 HIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRL 37
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG,
TCR-A, transcription factor; HET: DNA; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 86
Score = 70.7 bits (174), Expect = 2e-18
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
HIK+P+NAFM++ + R + +A I++ L
Sbjct: 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQIL 37
>1j46_A SRY, sex-determining region Y protein; MALE sex determining
factor, SRY, sex-reversal mutation; NMR {Homo sapiens}
SCOP: a.21.1.1 PDB: 1j47_A
Length = 85
Score = 70.7 bits (174), Expect = 2e-18
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
+ +KRPMNAF+VWS+ +RRK+ P M N+EISK+L
Sbjct: 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQL 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG
BOX, amphoterin, DNA/structural protein complex; NMR
{Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Length = 159
Score = 65.6 bits (160), Expect = 1e-15
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ +KRPMNAF+VWS+ +RRK+ P M N+EISK+L
Sbjct: 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLG 40
Score = 51.0 bits (122), Expect = 6e-10
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 4 YSPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
K +PN KRP +AF ++ R KI P + +++K+L
Sbjct: 75 RKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKL 123
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 60.9 bits (148), Expect = 2e-14
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ + K P+ ++ + R +I PD+ EI+K L
Sbjct: 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 43
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A
1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Length = 77
Score = 58.0 bits (141), Expect = 2e-13
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 15 PNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
PN KRP +AF ++ R KI P + +++K+L
Sbjct: 4 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 42
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 55.5 bits (134), Expect = 3e-12
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ + IK+PM+A ++ Q R + P + + ++
Sbjct: 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIE 43
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 55.4 bits (134), Expect = 3e-12
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
KK +PN KR ++A+M ++ R + PD+ ++ K+L
Sbjct: 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLG 56
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding
protein; NMR {Drosophila melanogaster}
Length = 73
Score = 53.4 bits (129), Expect = 9e-12
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ KR AFM+W R I P + EI+K+
Sbjct: 2 HMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGG 39
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box
domain, structural genomics, NPPSFA; NMR {Mus musculus}
Length = 102
Score = 54.3 bits (131), Expect = 9e-12
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ KK +PN ++P++A+ ++ + + I P+ E+SK +A
Sbjct: 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVA 53
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 53.9 bits (130), Expect = 1e-11
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHN--AEISKRLA 53
K +PN KR ++++M +++ +R +I P++ A I K +
Sbjct: 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIG 60
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 54.0 bits (130), Expect = 1e-11
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
K +P+ K+P+ + + +R K ++ P+M N +++K L+
Sbjct: 4 LKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILS 46
>3nm9_A HMG-D, high mobility group protein D; DNA bending,
non-sequence-specific, HMG chromosomal protein; HET:
DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A*
1hma_A 1qrv_A*
Length = 73
Score = 50.7 bits (122), Expect = 1e-10
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ KRP++A+ +W R I P + E++KR
Sbjct: 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGG 39
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 46.2 bits (110), Expect = 1e-08
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHN--AEISKRLA 53
K +P K M+A+ + Q R + + P++ AE SK+ +
Sbjct: 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCS 53
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1
Length = 83
Score = 45.0 bits (107), Expect = 3e-08
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 12 KNNPNHIKRPMNAFMVWSQMERRKICEVQPD--MHNAEISKRLA 53
K +P + M+++ + Q R + + PD ++ +E SK+ +
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCS 45
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group
box domain, helix-turn-helix, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 44.4 bits (104), Expect = 4e-08
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHN-AEISKRL 52
RP F +W + R I PD + A+I K
Sbjct: 4 GSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEG 41
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding,
helix-turn-helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 173
Score = 45.0 bits (106), Expect = 1e-07
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 4 YSPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
K +PN KRP +AF ++ R KI P + +++K+L
Sbjct: 88 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 137
Score = 44.6 bits (105), Expect = 2e-07
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPD--MHNAEISKRLA 53
K +P + M+++ + Q R + + PD ++ +E SK+ +
Sbjct: 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCS 53
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA
complex; HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 43.3 bits (101), Expect = 9e-07
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
R + + K+P+++++ +S+ + PD E+ +R+A
Sbjct: 32 RGSSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIA 77
Score = 32.1 bits (72), Expect = 0.007
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 4 YSPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ + + KRP +A+ V+ ++ E K +
Sbjct: 133 KAMTKKKELTLLGKPKRPRSAYNVYVAERFQEA----KGDSPQEKLKTVK 178
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT
DNA, protein-drug-DNA compl regulation-DNA complex;
HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1
PDB: 1j3x_A
Length = 71
Score = 40.4 bits (95), Expect = 1e-06
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 19 KRPMNAFMVWSQMERRKICEVQPDMHN--AEISKRLA 53
+ M+++ + Q R + + PD +E SK+ +
Sbjct: 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCS 39
>3tq6_A Transcription factor A, mitochondrial; transcription,
transcription regulation, mitochondrion; HET: DNA BRU
1PE; 2.45A {Homo sapiens}
Length = 214
Score = 40.1 bits (93), Expect = 1e-05
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ K+P+++++ +S+ + PD E+ +R+A
Sbjct: 3 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIA 45
Score = 29.7 bits (66), Expect = 0.050
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 4 YSPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ + + KRP +A+ V+ ++ E K +
Sbjct: 101 KAMTKKKELTLLGKPKRPRSAYNVYVAERFQEA----KGDSPQEKLKTVK 146
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial
transcription, activator, DNA- binding, mitochondrion,
phosphoprotein; 1.35A {Homo sapiens}
Length = 67
Score = 32.6 bits (75), Expect = 0.002
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 19 KRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
KRP +A+ V+ ++ P E K +
Sbjct: 4 KRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVK 34
>1v64_A Nucleolar transcription factor 1; DNA binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Length = 108
Score = 26.9 bits (59), Expect = 0.40
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLALLS 56
K + K P N++ ++ + +V S++ LLS
Sbjct: 11 DKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLS 56
>1v63_A Nucleolar transcription factor 1; DNA binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, DNA binding protein; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 101
Score = 26.4 bits (58), Expect = 0.63
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 19 KRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
K PMN + +SQ + E +
Sbjct: 10 KPPMNGYQKFSQELLSNGEL--NHLPLKERMVEIG 42
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 25.3 bits (54), Expect = 2.0
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 4 YSPMRATKKNNPNHIKRPMN-AFMVWSQMERRKICEVQPDMHNAEIS 49
Y T N + + AF VWS + K ++ M + +
Sbjct: 11 YRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVV 57
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A
1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A*
1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A*
1ciz_A* ...
Length = 173
Score = 25.2 bits (54), Expect = 2.4
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 4 YSPMRATKKNNPNHIKRPM-NAFMVWSQMERRKICEVQPDMHNAEIS 49
Y + T + + + A VW ++ + + IS
Sbjct: 17 YRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMIS 63
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 25.0 bits (55), Expect = 2.8
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 2 GLYSPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAE-ISK-----RLA 53
S + P+HI+RP A + E + ++N E I + L
Sbjct: 66 WPLSKINHV----PSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILG 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 3.1
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 15 PNHIKRPMNAF-MVWSQMERRKICEVQPDMHNAEISKR------LALLSLY 58
P P ++W + + + V +H + ++ +++ S+Y
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 24.4 bits (52), Expect = 4.1
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 4 YSPMRATKKNNPNHIKRPM-NAFMVWSQMERRKICEVQPDMHNAEIS 49
Y T N + + AF VWS + K ++ M + +
Sbjct: 12 YRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVV 58
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation,
psychrophilic, cold adaptation, temperature, glycosyl
hydrolase, family 8; HET: XYP XYS; 1.2A
{Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB:
1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Length = 405
Score = 24.4 bits (52), Expect = 5.2
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 8 RATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNA 46
+A +KN NH W + + D A
Sbjct: 104 KAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPA 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.414
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,083,188
Number of extensions: 45886
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 42
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)