RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5107
(74 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 55.2 bits (133), Expect = 8e-13
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ +KRPMNAFMVWS+ +RRK+ + P MHN+EISKRL
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 38
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 54.2 bits (130), Expect = 3e-12
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 5 SPMRATKKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
P + K KRP++A ++S+ +RR++ E +P++ +E+++ L
Sbjct: 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLL 55
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 52.6 bits (126), Expect = 1e-11
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
HIK+P+NAFM++ + R + +A I++ L
Sbjct: 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILG 38
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 51.7 bits (124), Expect = 2e-11
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 17 HIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
HIKRPMNAFMVW++ ERRKI + PDMHN+ ISK L
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILG 38
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 51.0 bits (122), Expect = 4e-11
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ +KRPMNAF+VWS+ +RRK+ P M N+EISK+L
Sbjct: 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLG 40
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 49.5 bits (118), Expect = 3e-10
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRL 52
KK +PN KR ++A+M ++ R + PD+ ++ K+L
Sbjct: 14 KKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKL 55
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 49.2 bits (117), Expect = 3e-10
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKR 51
K +P+ K+P+ + + +R K ++ P+M N +++K
Sbjct: 4 LKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKI 44
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 47.1 bits (112), Expect = 1e-09
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 16 NHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ KRP++A+M+W R I P + E++KR
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGG 39
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 45.2 bits (107), Expect = 8e-09
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 19 KRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
KRP +AF ++ R KI P + +++K+L
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 38
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 41.4 bits (97), Expect = 4e-07
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
+ K PMN + +SQ + E +
Sbjct: 2 SSGSSGPKKPPMNGYQKFSQELLSNG--ELNHLPLKERMVEIG 42
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 40.2 bits (94), Expect = 5e-07
Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 19 KRPMNAFMVWSQMERRKICEVQPD--MHNAEISKRLA 53
+ M+++ + Q R + + PD ++ +E SK+ +
Sbjct: 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCS 39
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 40.3 bits (94), Expect = 1e-06
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 11 KKNNPNHIKRPMNAFMVWSQMERRKICEVQPDMHNAEISKRLA 53
K + K P N++ ++ + D+ + E +
Sbjct: 11 DKFDGRPTKPPPNSYSLYCAELMANM----KDVPSTERMVLCS 49
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 162
Score = 22.9 bits (48), Expect = 5.0
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 4 YSPMRATKKNNPNHIKRPM-NAFMVWSQMERRKICEVQPDMHNAEIS 49
Y +R + +++ + A VWS++ EV + I
Sbjct: 16 YRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMID 62
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl
transferase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 22.5 bits (48), Expect = 5.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 1 MGLYSPMRATKKNNPNH 17
+ Y+ R T NN N
Sbjct: 3 ISQYACQRRTTLNNYNQ 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.132 0.414
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,270
Number of extensions: 9483
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 15
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)