Query psy5108
Match_columns 345
No_of_seqs 201 out of 627
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:28:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3126|consensus 100.0 1.1E-61 2.5E-66 456.2 25.3 254 1-345 2-257 (281)
2 cd07306 Porin3_VDAC Voltage-de 100.0 3.7E-56 8E-61 423.3 34.6 250 3-345 1-252 (276)
3 cd07303 Porin3 Eukaryotic pori 100.0 1.4E-46 3E-51 357.4 31.2 245 5-345 1-253 (274)
4 PF01459 Porin_3: Eukaryotic p 100.0 2.7E-40 5.9E-45 310.8 35.8 249 2-345 1-258 (273)
5 cd07305 Porin3_Tom40 Transloca 100.0 4.5E-28 9.8E-33 231.0 27.9 244 2-345 3-258 (279)
6 cd07306 Porin3_VDAC Voltage-de 99.7 2.7E-15 5.9E-20 142.9 22.9 187 99-344 4-198 (276)
7 KOG3126|consensus 99.6 1.4E-14 3E-19 137.4 15.0 186 99-343 7-202 (281)
8 cd07303 Porin3 Eukaryotic pori 99.4 2.6E-11 5.6E-16 115.7 21.6 185 103-344 6-199 (274)
9 PF01459 Porin_3: Eukaryotic p 99.4 3.1E-10 6.8E-15 106.7 24.2 183 103-344 9-204 (273)
10 KOG3296|consensus 99.2 1.3E-11 2.8E-16 118.1 5.2 176 163-344 102-286 (308)
11 cd07305 Porin3_Tom40 Transloca 99.0 2.2E-07 4.8E-12 88.8 23.4 140 197-344 53-205 (279)
12 TIGR00989 3a0801s07tom40 mitoc 97.7 0.002 4.2E-08 56.9 14.8 78 163-245 74-161 (161)
13 TIGR00989 3a0801s07tom40 mitoc 94.2 1.5 3.2E-05 38.9 12.9 91 251-344 55-154 (161)
14 PRK10716 long-chain fatty acid 89.6 26 0.00057 35.7 20.2 71 274-344 286-397 (435)
15 PF10082 DUF2320: Uncharacteri 86.2 36 0.00077 33.4 19.7 98 222-323 232-353 (381)
16 PF06178 KdgM: Oligogalacturon 77.3 61 0.0013 30.0 12.9 53 271-323 58-112 (218)
17 KOG3296|consensus 76.7 1.2 2.6E-05 43.4 1.2 93 249-343 132-231 (308)
18 COG2067 FadL Long-chain fatty 76.0 22 0.00049 36.5 10.2 101 221-322 283-399 (440)
19 cd00342 gram_neg_porins Porins 70.5 97 0.0021 29.2 14.4 19 304-322 237-255 (329)
20 PRK03761 LPS assembly outer me 70.2 69 0.0015 35.2 12.9 80 233-312 612-715 (778)
21 PF03349 Toluene_X: Outer memb 70.0 1.2E+02 0.0026 30.1 18.3 25 275-299 270-294 (427)
22 PF13609 Porin_4: Gram-negativ 69.0 1E+02 0.0022 28.8 12.9 38 287-324 261-303 (311)
23 PF13609 Porin_4: Gram-negativ 68.0 1E+02 0.0023 28.6 15.0 109 234-344 153-299 (311)
24 COG2067 FadL Long-chain fatty 65.8 90 0.002 32.1 11.9 26 274-299 285-310 (440)
25 PF04357 DUF490: Family of unk 61.7 70 0.0015 31.2 10.1 61 276-337 315-378 (379)
26 PF03349 Toluene_X: Outer memb 61.1 1.8E+02 0.0038 28.8 17.1 46 275-320 327-385 (427)
27 PRK04423 organic solvent toler 59.5 1.3E+02 0.0029 33.3 12.6 80 233-312 628-719 (798)
28 PF11854 DUF3374: Protein of u 55.1 3E+02 0.0066 29.7 16.1 119 180-306 431-555 (637)
29 PF11383 DUF3187: Protein of u 53.7 2.3E+02 0.005 27.9 15.6 51 278-328 241-300 (319)
30 PF06082 DUF940: Bacterial put 52.0 3.4E+02 0.0074 29.4 14.4 63 277-341 167-239 (658)
31 PRK04423 organic solvent toler 51.3 2.8E+02 0.006 30.8 13.4 103 168-270 617-729 (798)
32 PF03895 YadA_anchor: YadA-lik 51.1 1.1E+02 0.0023 23.3 8.5 36 288-325 26-61 (78)
33 cd00342 gram_neg_porins Porins 48.7 2.4E+02 0.0051 26.5 16.2 47 276-322 238-291 (329)
34 PF10082 DUF2320: Uncharacteri 47.6 2.8E+02 0.006 27.1 12.5 26 287-313 332-357 (381)
35 PRK15318 intimin-like protein 45.3 4.1E+02 0.0088 29.1 12.9 90 234-323 168-290 (730)
36 PRK03761 LPS assembly outer me 43.6 2.3E+02 0.0049 31.2 11.3 104 168-271 601-726 (778)
37 PRK10993 outer membrane protea 42.6 1.1E+02 0.0025 30.0 7.8 133 190-338 52-195 (314)
38 PRK09980 ompL outer membrane p 40.2 1.1E+02 0.0023 28.8 7.0 54 272-325 69-125 (230)
39 PF04453 OstA_C: Organic solve 39.7 2.2E+02 0.0048 27.7 9.7 48 222-269 306-354 (388)
40 PRK10716 long-chain fatty acid 34.7 5.1E+02 0.011 26.4 18.3 47 276-322 340-399 (435)
41 PF05420 BCSC_C: Cellulose syn 33.8 95 0.0021 30.9 5.9 42 275-316 298-341 (342)
42 PF06178 KdgM: Oligogalacturon 33.1 4E+02 0.0086 24.6 16.7 20 116-135 26-45 (218)
43 PF13557 Phenol_MetA_deg: Puta 31.5 3.9E+02 0.0084 24.0 18.3 48 278-325 168-230 (248)
44 PF13557 Phenol_MetA_deg: Puta 29.1 4.2E+02 0.0092 23.7 12.6 15 330-344 211-225 (248)
45 PF12519 DUF3722: Protein of u 28.1 1.6E+02 0.0035 28.2 6.1 63 234-297 190-259 (260)
46 PF03895 YadA_anchor: YadA-lik 24.7 3.1E+02 0.0068 20.7 6.5 36 277-313 42-77 (78)
No 1
>KOG3126|consensus
Probab=100.00 E-value=1.1e-61 Score=456.23 Aligned_cols=254 Identities=46% Similarity=0.824 Sum_probs=245.5
Q ss_pred CCCCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCCceEEEEEeeEeeeccccccccCcccccch
Q psy5108 1 MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSK 80 (345)
Q Consensus 1 m~p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (345)
|+||.|.||||.|||||+|||++++|+++++|++.+||+|+++|.++.+.+++.|.+|+||
T Consensus 2 ~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~------------------- 62 (281)
T KOG3126|consen 2 MAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKY------------------- 62 (281)
T ss_pred CCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEE-------------------
Confidence 7899999999999999999999999999999999999999999999988999999999999
Q ss_pred hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceee
Q psy5108 81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160 (345)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~ 160 (345)
++++| |+++
T Consensus 63 ----------------------------------------------------------------------~~~~~-glt~ 71 (281)
T KOG3126|consen 63 ----------------------------------------------------------------------KDKDY-GLTL 71 (281)
T ss_pred ----------------------------------------------------------------------eeccC-ceEE
Confidence 55889 9999
Q ss_pred EEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeE
Q psy5108 161 SEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLC 238 (345)
Q Consensus 161 t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~l 238 (345)
+|+|+|+|.|.|+|+++ ++||||++++.+|.|+++++++|++++|.|++++++++ .+.+.+|.+.+++|+|+++|++
T Consensus 72 t~kw~Tdn~L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~-~~~~~~P~i~~s~v~g~~g~l~ 150 (281)
T KOG3126|consen 72 TEKWNTDNTLGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGAD-DFLTANPLILGSLVLGHEGWLL 150 (281)
T ss_pred EEEeecCCccceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeec-cccccCCeEEEEEEecccceEE
Confidence 99999999999999997 99999999999999988999999999999999999986 5556899999999999999999
Q ss_pred eEEEEEeccCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCCc
Q psy5108 239 GYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQA 318 (345)
Q Consensus 239 G~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~ 318 (345)
|+|+.||++++++++|+++++|.++|+++++.++|++++.+|+|||+++.+++++++.|..+.++++|+||.||.+|+++
T Consensus 151 G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t 230 (281)
T KOG3126|consen 151 GYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDT 230 (281)
T ss_pred EEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108 319 SVRAKVNNASQIGLGYSQKLNDALSLN 345 (345)
Q Consensus 319 ~lKAKvnn~g~vgl~y~qkL~p~v~lt 345 (345)
+|||||||+|+++++|||+|||+|+++
T Consensus 231 ~VkAKVnn~g~~gl~yq~~lrp~i~~t 257 (281)
T KOG3126|consen 231 SVKAKVNNAGLAGLGYQQTLRPGIKVT 257 (281)
T ss_pred eeeeeecCCceeeEEEEEecCCCcEEE
Confidence 999999999999999999999999875
No 2
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=3.7e-56 Score=423.26 Aligned_cols=250 Identities=42% Similarity=0.781 Sum_probs=239.4
Q ss_pred CCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCCceEEEEEeeEeeeccccccccCcccccchhh
Q psy5108 3 PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDA 82 (345)
Q Consensus 3 p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~ 82 (345)
||+|+||||.|||||+|||+++.|+|+|+|++++||+|++.++++.+.++++|.+|+||.
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~-------------------- 60 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK-------------------- 60 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEE--------------------
Confidence 899999999999999999998999999999999999999999999877999999999992
Q ss_pred HhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEE
Q psy5108 83 KLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSE 162 (345)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~ 162 (345)
.. |++++|
T Consensus 61 -----------------------------------------------------------------------~~-~~t~~~ 68 (276)
T cd07306 61 -----------------------------------------------------------------------IK-GLTLTQ 68 (276)
T ss_pred -----------------------------------------------------------------------eC-CEEEEE
Confidence 23 789999
Q ss_pred EecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeE
Q psy5108 163 KWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGY 240 (345)
Q Consensus 163 ~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~ 240 (345)
+|+|+|.+.++|+++ ++||||++++++|.|+.+.++++|+++|+|+++++++++++. ..|.++.++++|+++|++|+
T Consensus 69 k~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~-~~p~~~~s~~~g~~~~~~G~ 147 (276)
T cd07306 69 KWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLN-KGPLVGASAVLGYKGFLLGA 147 (276)
T ss_pred EEeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEeccc-CCCeeEEEEEecccceEEEE
Confidence 999999999999999 669999999999999988999999999999999999999886 39999999999999999999
Q ss_pred EEEEeccCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCCcEE
Q psy5108 241 SLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASV 320 (345)
Q Consensus 241 e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~~l 320 (345)
|+.||++++++++++++++|+.+||+++++++|++.+++||||+|++++++|+|+.|+...+++.++||+||++|+++++
T Consensus 148 e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~v 227 (276)
T cd07306 148 EVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALV 227 (276)
T ss_pred EEEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEE
Confidence 99999999899999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEEcCCCeEEEEEEEEccCCceeC
Q psy5108 321 RAKVNNASQIGLGYSQKLNDALSLN 345 (345)
Q Consensus 321 KAKvnn~g~vgl~y~qkL~p~v~lt 345 (345)
|||||++|.++++|+|+|+|+++++
T Consensus 228 kakv~~~g~v~~~y~~kl~~~v~~t 252 (276)
T cd07306 228 KAKVNNDGQLGLSYQHKLRPGVTLT 252 (276)
T ss_pred EEEECCCceEEEEEEEEcCCCcEEE
Confidence 9999999999999999999999874
No 3
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=1.4e-46 Score=357.43 Aligned_cols=245 Identities=42% Similarity=0.780 Sum_probs=223.8
Q ss_pred CCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecC----CCceEEEEEeeEeeeccccccccCcccccch
Q psy5108 5 LYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLE----SGKIFGTLESKYKAKNYAGWLCGYSLKFDSK 80 (345)
Q Consensus 5 ~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~----~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (345)
.|.||||.|||||++||++| +||+|++.+++ +|+++++...+ .+++.+.+|+||
T Consensus 1 ~~~digk~ardll~~~~~~g-~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~------------------- 58 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGG-IKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKY------------------- 58 (274)
T ss_pred ChhHhhhhhHHhcccCCCCC-EEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEee-------------------
Confidence 48999999999999999988 59999999988 69999887743 346666666666
Q ss_pred hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceee
Q psy5108 81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160 (345)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~ 160 (345)
+++++ |+++
T Consensus 59 ----------------------------------------------------------------------~~~~~-~~t~ 67 (274)
T cd07303 59 ----------------------------------------------------------------------RWSPY-GLTF 67 (274)
T ss_pred ----------------------------------------------------------------------eecCC-CeEE
Confidence 55667 9999
Q ss_pred EEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeE
Q psy5108 161 SEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLC 238 (345)
Q Consensus 161 t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~l 238 (345)
+++|+++|.+.++++++ +.||||+++.+++.|+++.++++++.+|+++++++.++++ ..+|++..++++++++|++
T Consensus 68 ~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~--~~gp~v~~~~~~g~~~~~~ 145 (274)
T cd07303 68 TEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFD--IAGPLIRGALVLGYEGWLA 145 (274)
T ss_pred EEEEEcCCcceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEee--cCCCEEEEEEEEeecceEE
Confidence 99999999999999999 8899999999999887788999999999999888876654 4799999999999999999
Q ss_pred eEEEEEeccCccccceeEEeeEEc--CceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCC
Q psy5108 239 GYSLKFDSKDAKLKANRLSLGFVG--SDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLEN 316 (345)
Q Consensus 239 G~e~~yd~~~~~~tk~~~~lgY~~--~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~ 316 (345)
|+|+.||+++ .+++++++++|.. +||+++++++|++.+++||||||+++|++|+|++|+.+++++.++||+||+||+
T Consensus 146 G~e~~yd~~~-~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~ 224 (274)
T cd07303 146 GYQMVFETVS-RVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDP 224 (274)
T ss_pred EEEEEEeccc-cccccceEEEEEccCCCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCC
Confidence 9999999988 4689999999999 899999999999999999999999999999999999888999999999999999
Q ss_pred CcEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108 317 QASVRAKVNNASQIGLGYSQKLNDALSLN 345 (345)
Q Consensus 317 ~~~lKAKvnn~g~vgl~y~qkL~p~v~lt 345 (345)
++++|||||++|.++++|||+|+|+++|+
T Consensus 225 ~~~vkakids~g~v~~~~~~~l~~~~~lt 253 (274)
T cd07303 225 DACFSASVNNSSLVGLGYTQTLKPGIKLT 253 (274)
T ss_pred CCEEEEEECCCceEEEEEEEEcCCCcEEE
Confidence 99999999999999999999999999875
No 4
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=2.7e-40 Score=310.81 Aligned_cols=249 Identities=27% Similarity=0.466 Sum_probs=227.3
Q ss_pred CCCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCC-ceEEEEEeeEeeeccccccccCcccccch
Q psy5108 2 APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGWLCGYSLKFDSK 80 (345)
Q Consensus 2 ~p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~-~~~g~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (345)
+||.|.||+|.|||||++||+|+.++|+|++++++|+.|++++......+ .+.+.++++|.
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK------------------ 62 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE------------------
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe------------------
Confidence 59999999999999999999999999999999999999999999997767 89999999992
Q ss_pred hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceee
Q psy5108 81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160 (345)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~ 160 (345)
|.++
T Consensus 63 ----------------------------------------------------------------------------~~~~ 66 (273)
T PF01459_consen 63 ----------------------------------------------------------------------------GPKL 66 (273)
T ss_dssp ----------------------------------------------------------------------------CEEE
T ss_pred ----------------------------------------------------------------------------Ccee
Confidence 4467
Q ss_pred EEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeec-cee
Q psy5108 161 SEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYN-GWL 237 (345)
Q Consensus 161 t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~-g~~ 237 (345)
++.|+.++...++++++ +.|||++.+.+++.|.+..+..+++++|+++.+++.+++++ ...|.+..+.+.++. +|+
T Consensus 67 ~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~-~~~~~~~~s~~~~v~~~~~ 145 (273)
T PF01459_consen 67 TVKGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDN-DNNPIFNASYVQSVTPNLA 145 (273)
T ss_dssp EEEEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEE-STS-EEEEEEEEEET-TEE
T ss_pred eEEEEeCCcccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcc-cCCCcEEEEEEEeccccEE
Confidence 78999999999999999 89999999999998876678999999999999999998887 469999999999997 999
Q ss_pred EeEEEEEeccCccccceeEEeeEEcC----ceEEEEEe-cCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEE
Q psy5108 238 CGYSLKFDSKDAKLKANRLSLGFVGS----DFVFHTNV-DDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKY 312 (345)
Q Consensus 238 lG~e~~yd~~~~~~tk~~~~lgY~~~----d~~~s~~l-~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky 312 (345)
+|+|+.||...+.+.+++++++|..+ ++++++++ ++...+.+||||++++++++|+|+.|+....++.++||++|
T Consensus 146 lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~ 225 (273)
T PF01459_consen 146 LGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQY 225 (273)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEE
T ss_pred EEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEE
Confidence 99999999999999999999999988 99999999 46999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108 313 DLENQASVRAKVNNASQIGLGYSQKLNDALSLN 345 (345)
Q Consensus 313 ~ld~~~~lKAKvnn~g~vgl~y~qkL~p~v~lt 345 (345)
++++.++||+|||++|.++++|+++|+|+++|+
T Consensus 226 ~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ 258 (273)
T PF01459_consen 226 KLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLT 258 (273)
T ss_dssp EECTTEEEEEEEETTSEEEEEEEEEECTTEEEE
T ss_pred EcCcccEEEEEEcCCCEEEEEEEEecCCCcEEE
Confidence 999888999999999999999999999999874
No 5
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.97 E-value=4.5e-28 Score=230.96 Aligned_cols=244 Identities=14% Similarity=0.246 Sum_probs=204.4
Q ss_pred CCCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCC-ceEEEEEeeEeeeccccccccCcccccch
Q psy5108 2 APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGWLCGYSLKFDSK 80 (345)
Q Consensus 2 ~p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~-~~~g~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (345)
.|+.|.||.|.+|||+..+|..|. +|++.....+...++-+-..... + ...-.+-+.|..
T Consensus 3 nPg~~e~l~~e~k~~~~~~~~~G~-r~~~~k~ls~~f~~shs~~lg~~-~~~~~y~f~a~y~~----------------- 63 (279)
T cd07305 3 NPGTFEELHREVKEVFPLDFFDGF-RLDVNKGLSPHFQVSHSLHLGSS-SLTSSYQFGATYVG----------------- 63 (279)
T ss_pred CCccHHHHHHHHHHhcCccccccE-EEEEccccCcCeeEEEEEEECCC-CCCCCcEeeeEEec-----------------
Confidence 499999999999999999988555 99999887777666555444431 2 233455555521
Q ss_pred hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeecccc--ccce
Q psy5108 81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKN--YAGL 158 (345)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~--~~Gl 158 (345)
.+ .
T Consensus 64 ------------------------------------------------------------------------~~~~~--- 68 (279)
T cd07305 64 ------------------------------------------------------------------------DKQYP--- 68 (279)
T ss_pred ------------------------------------------------------------------------CCCcE---
Confidence 22 3
Q ss_pred eeEEEecCCCceEEEEEEEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCc-eEEeeeEEe-----
Q psy5108 159 TFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNP-VISAAGVLG----- 232 (345)
Q Consensus 159 t~t~~w~t~n~l~tei~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P-~v~~s~v~g----- 232 (345)
.+.-++++++.+.+.+...+.+.++..+..++ |+.+....+++++|..+++++. +.+.+| .++.+++++
T Consensus 69 ~~~~~id~~g~l~~~~~~~~~~~~~~k~~~~~-~~~~~~~~q~~~dy~g~d~t~~----l~~~n~~~~~~sg~~~~~ylq 143 (279)
T cd07305 69 FLQGDIDNDGNLNARIIHQLGDRLRSKLQAQL-QDSKFNMSQLELDYRGDDFTAS----LKLANPDILNETGIYVASYLQ 143 (279)
T ss_pred EEEEEeCCCCceeEEEEeccCcceEEEEEEEe-cCCCceeEEEEEEEcCCceEEE----EEEeCCCcccccEEEEEEEEE
Confidence 56668999999999998778899999888887 3435568999999999888864 445788 457788877
Q ss_pred --ecceeEeEEEEEec-cCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEE
Q psy5108 233 --YNGWLCGYSLKFDS-KDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFG 309 (345)
Q Consensus 233 --~~g~~lG~e~~yd~-~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG 309 (345)
.+.|.+|+|+.|++ +.++++.++++++|+.++|++++++++...+.+||||++++++++|+|+.|+...+++.+++|
T Consensus 144 ~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg 223 (279)
T cd07305 144 SVTPKLALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLG 223 (279)
T ss_pred EccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEE
Confidence 69999999999996 567789999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108 310 CKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN 345 (345)
Q Consensus 310 ~ky~ld~~~~lKAKvnn~g~vgl~y~qkL~p~v~lt 345 (345)
++|.++ ++.+||+||++|.++++|+|+|+|+++|+
T Consensus 224 ~~y~~~-~~~~k~~ids~g~v~~~~e~~l~~~~~l~ 258 (279)
T cd07305 224 YQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLPLSLL 258 (279)
T ss_pred EEEEcC-CCEEEEEEcCCCEEEEEEEEecCCCeEEE
Confidence 999996 99999999999999999999999999874
No 6
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=99.70 E-value=2.7e-15 Score=142.92 Aligned_cols=187 Identities=26% Similarity=0.417 Sum_probs=141.8
Q ss_pred eeecccccccee----eeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEEEecCCCceEEEE
Q psy5108 99 VFHTNVSSRQIF----NIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEV 174 (345)
Q Consensus 99 ~~~~~~~~rD~y----~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei 174 (345)
+.+-||++||.+ +++.|+|||+|++++||+|++.|.+.++.++++|+|| .+| ++. +...++
T Consensus 4 f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e-----~k~-------~~~--~~t~~~- 68 (276)
T cd07306 4 YFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLE-----AKY-------KIK--GLTLTQ- 68 (276)
T ss_pred eeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEE-----EEE-------EeC--CEEEEE-
Confidence 445689999954 3699999999999999999999999999999999999 777 444 433333
Q ss_pred EEEecccceEEEEEEEecCCCCcceEEEEEEecc-ceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCccccc
Q psy5108 175 SSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNS-LAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKA 253 (345)
Q Consensus 175 ~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~-~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk 253 (345)
+|+++ +.|.++...+ .+. +++-+-.+..|.|..++ ..
T Consensus 69 --------------k~~t~-----n~l~t~v~~~~~~~----------------------~glk~~~~~~~~p~~~~-~s 106 (276)
T cd07306 69 --------------KWNTD-----NVLLTEITIEDLLA----------------------PGLKLTLDTTFPPNTGK-KS 106 (276)
T ss_pred --------------EEeCC-----CceeEEEEECcccC----------------------CcceEEEEEEECCCCCC-ce
Confidence 66554 3444444422 221 34444455678877555 67
Q ss_pred eeEEeeEEcCceEEEEEecC--CCceeeeEEEEccCceeEEEEEEEeccC-CCceEEEEEEEecCCCcEEEEEEcCCCeE
Q psy5108 254 NRLSLGFVGSDFVFHTNVDD--GKLFGGTVYQKLGPKLETGVQLAWSSES-NDTKFAFGCKYDLENQASVRAKVNNASQI 330 (345)
Q Consensus 254 ~~~~lgY~~~d~~~s~~l~n--~~~~~~S~~~kv~~~~~vGae~~~~~~~-~~~~~~vG~ky~ld~~~~lKAKvnn~g~v 330 (345)
..+.++|.++.+.+.+.+.. ...+.+|..... ++|.+|+|+.|+..+ .-....+|++|.= ++.++.++++|...+
T Consensus 107 ~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~-~d~~~s~~l~~~~~l 184 (276)
T cd07306 107 GKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAEVVYDTAKSKFTKYNFALGYTN-GDFELSLKLNNGKTL 184 (276)
T ss_pred EEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEEEEEeccCCcEeeEEEEEEEec-CCeEEEEEECCCCEE
Confidence 78999999999888877654 455666655544 899999999999876 3456667777753 899999999999999
Q ss_pred EEEEEEEccCCcee
Q psy5108 331 GLGYSQKLNDALSL 344 (345)
Q Consensus 331 gl~y~qkL~p~v~l 344 (345)
.++|.|++.|++.+
T Consensus 185 ~~S~~~kv~~~l~~ 198 (276)
T cd07306 185 RGSYFHKVSPRLAV 198 (276)
T ss_pred EEEEEEEcCCCeEE
Confidence 99999999998765
No 7
>KOG3126|consensus
Probab=99.60 E-value=1.4e-14 Score=137.38 Aligned_cols=186 Identities=25% Similarity=0.378 Sum_probs=145.8
Q ss_pred eeeccccccceee----eeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEEEecCCCceEEEE
Q psy5108 99 VFHTNVSSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEV 174 (345)
Q Consensus 99 ~~~~~~~~rD~y~----~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei 174 (345)
..+-||.+||.|+ +|.|+++|+|++++||+|+++|+++++.+++.|++| .+| +|...|.++++
T Consensus 7 y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle-----~k~-------~~~~~glt~t~- 73 (281)
T KOG3126|consen 7 YADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLE-----TKY-------KDKDYGLTLTE- 73 (281)
T ss_pred hhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeE-----EEE-------eeccCceEEEE-
Confidence 4566999999654 899999999999999999999999999999999999 999 99999999988
Q ss_pred EEEecccceEEEEEEEecCCCCcceEEEEEEe-ccceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCccccc
Q psy5108 175 SSNIIDGARLAANTSFAPQTGDKTVKLSGEYK-NSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKA 253 (345)
Q Consensus 175 ~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~-~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk 253 (345)
.|+.+ +.|.++.. ++.+. +++.+..+..|-+..++ ..
T Consensus 74 --------------kw~Td-----n~L~t~I~~~~~~~----------------------pglk~~~~~s~~p~~~~-ks 111 (281)
T KOG3126|consen 74 --------------KWNTD-----NTLGTEITVEDQLA----------------------PGLKLTLDSSFSPNTGK-KS 111 (281)
T ss_pred --------------EeecC-----CccceEEEEccccC----------------------CceEEEEEEeecCcccc-cc
Confidence 77655 44555555 24344 45555556677776665 67
Q ss_pred eeEEeeEEcCceEEEEE--ecCCCceeeeEEEEccCceeEEEEEEEeccCC---CceEEEEEEEecCCCcEEEEEEcCCC
Q psy5108 254 NRLSLGFVGSDFVFHTN--VDDGKLFGGTVYQKLGPKLETGVQLAWSSESN---DTKFAFGCKYDLENQASVRAKVNNAS 328 (345)
Q Consensus 254 ~~~~lgY~~~d~~~s~~--l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~---~~~~~vG~ky~ld~~~~lKAKvnn~g 328 (345)
..+.++|..+.+.++.. +.....+.+|... -.+.|.+|+++.|+..++ ..++++|+.. +++++...+||.+
T Consensus 112 ~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~-g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~---~d~~l~~~~nn~~ 187 (281)
T KOG3126|consen 112 GKLKLSYARDHFNLGADDFLTANPLILGSLVL-GHEGWLLGYETTFDTASGKLTKYNAALGYTT---EDFTLHLNLNNGT 187 (281)
T ss_pred eeeecccccccceeeeccccccCCeEEEEEEe-cccceEEEEeEEEeccCCcEeeEEEEEEeec---CCcEEEEEecccc
Confidence 88899999998888762 1112334443222 257899999999999874 6677777765 8999999999999
Q ss_pred eEEEEEEEEccCCce
Q psy5108 329 QIGLGYSQKLNDALS 343 (345)
Q Consensus 329 ~vgl~y~qkL~p~v~ 343 (345)
.+..+++|++.+.+.
T Consensus 188 ~~~~s~yq~v~~~~~ 202 (281)
T KOG3126|consen 188 EFLASIYQRVNEKLE 202 (281)
T ss_pred hhhhhhhhhhcchhe
Confidence 999999999988743
No 8
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=99.43 E-value=2.6e-11 Score=115.66 Aligned_cols=185 Identities=25% Similarity=0.384 Sum_probs=130.7
Q ss_pred cccccceee---eeeEEEEEeeecCCCeeeeeccccccc----cCceecceeeeeccccccceeeEEEecCCCceEEEEE
Q psy5108 103 NVSSRQIFN---IDVIKIDLKTKTDSGVEFNSGGTAQLE----SGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVS 175 (345)
Q Consensus 103 ~~~~rD~y~---~g~~~ldvkTkt~ngv~ft~~g~~~~~----~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei~ 175 (345)
+|.+||.++ ...+++||+|.+++ +|++.|..... .+++.+++| .++ .+.+.+...++
T Consensus 6 gk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~-----~k~-------~~~~~~~t~~~-- 69 (274)
T cd07303 6 GKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLE-----TKY-------RWSPYGLTFTE-- 69 (274)
T ss_pred hhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEE-----Eee-------eecCCCeEEEE--
Confidence 566677555 11499999999998 69999988754 678888888 777 66666655555
Q ss_pred EEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCcccccee
Q psy5108 176 SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANR 255 (345)
Q Consensus 176 ~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk~~ 255 (345)
.|.++. .+.+++++. +.+. +++.+=+++.+++.+++ ....
T Consensus 70 -------------~~~~dn---~~~~~~~~~-~~~~----------------------~glk~~~~~~~~~~~~~-~~~q 109 (274)
T cd07303 70 -------------KWNTDN---TLGLEITVE-DQLS----------------------RGLKSTFDSSFSPNTGK-KNAK 109 (274)
T ss_pred -------------EEEcCC---cceEEEEEe-cccC----------------------CCeEEEEEEEECCCCcc-EEEE
Confidence 454441 122222222 1222 23333344566665554 6788
Q ss_pred EEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccC--CCceEEEEEEEecCCCcEEEEEEcCCCeEEEE
Q psy5108 256 LSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSES--NDTKFAFGCKYDLENQASVRAKVNNASQIGLG 333 (345)
Q Consensus 256 ~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~--~~~~~~vG~ky~ld~~~~lKAKvnn~g~vgl~ 333 (345)
+...|..+++.+.+.+.+...+-.++.+.+.++|.+|+|+.|+..+ ....+++++.-.. ++..+.++++|...+.++
T Consensus 110 ~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~y~~~y-~d~~~s~~l~~~~~l~~S 188 (274)
T cd07303 110 IKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDY-NEFQAHTNVNDGTEFGGS 188 (274)
T ss_pred EeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEEEEEEeccccccccceEEEEEccC-CCeEEEEEEcCCCeEEEE
Confidence 8899999999999998664455567788889999999999999854 3456666654333 788889999998999999
Q ss_pred EEEEccCCcee
Q psy5108 334 YSQKLNDALSL 344 (345)
Q Consensus 334 y~qkL~p~v~l 344 (345)
|.||++|++.+
T Consensus 189 y~hkvs~~~~~ 199 (274)
T cd07303 189 IYHKVNDKLEV 199 (274)
T ss_pred EEEEcCCceEE
Confidence 99999998875
No 9
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=99.36 E-value=3.1e-10 Score=106.66 Aligned_cols=183 Identities=23% Similarity=0.396 Sum_probs=121.6
Q ss_pred cccccce----eeeeeEEEEEeeecCCCeeeeeccccccccC-ceecceeeeeccccccceeeEEEecCCCceEEEEEEE
Q psy5108 103 NVSSRQI----FNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSN 177 (345)
Q Consensus 103 ~~~~rD~----y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~-~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei~~~ 177 (345)
+|.+||+ |++++++|||++++++++.|++.++..+... ++.+.+| . +.
T Consensus 9 ~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-------~-------~~------------- 61 (273)
T PF01459_consen 9 GKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFG-------A-------KY------------- 61 (273)
T ss_dssp CHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEE-------E-------EE-------------
T ss_pred hHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEE-------E-------EE-------------
Confidence 5566663 5789999999999999999999998776555 4444444 1 11
Q ss_pred ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCccccceeEE
Q psy5108 178 IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLS 257 (345)
Q Consensus 178 l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk~~~~ 257 (345)
. |.++.+.... + ..+.+++++.+. +. ++|.+-.++.+.+.+.. ....+.
T Consensus 62 -~-~~~~~~~~~~--d---~~~~~~~~~~~~-~~----------------------~~l~~~~~~~~~~~~~~-~~~~l~ 110 (273)
T PF01459_consen 62 -K-GPKLTVKGDT--D---NDGNLEASVRNK-LS----------------------PGLKLKLSAQLSPGSGK-KSAQLE 110 (273)
T ss_dssp -E-CEEEEEEEET--T---TEEEEEEEEESS-TT----------------------TTEEEEEEEEE-TTTS--EEEEEE
T ss_pred -e-CceeeEEEEe--C---CcccEEEEEecc-cC----------------------cceEEEEEEEEeecCCc-eeeEEE
Confidence 1 2222222221 1 124455555432 22 22222223334444333 678889
Q ss_pred eeEEcCceEEEEEecC--CCceeeeEEEEccCceeEEEEEEEeccCCCce-----EEEEEEEecCCCcEEEEEE-cCCCe
Q psy5108 258 LGFVGSDFVFHTNVDD--GKLFGGTVYQKLGPKLETGVQLAWSSESNDTK-----FAFGCKYDLENQASVRAKV-NNASQ 329 (345)
Q Consensus 258 lgY~~~d~~~s~~l~n--~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~-----~~vG~ky~ld~~~~lKAKv-nn~g~ 329 (345)
+.|..+++.+.+.+.+ ...+.+|+.|.+.|+|.+|+|+.|+...+... +.++.+|. +++.++.+.+ ++...
T Consensus 111 ~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~~~~~~~~~~~ 189 (273)
T PF01459_consen 111 ADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYT-HPDYTASATLSNNFGT 189 (273)
T ss_dssp EEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTE
T ss_pred EEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEecccc-ceeEEEEEEEcCCCCE
Confidence 9999999999998775 67789999999999999999999998875444 44445444 3699999999 78999
Q ss_pred EEEEEEEEccCCcee
Q psy5108 330 IGLGYSQKLNDALSL 344 (345)
Q Consensus 330 vgl~y~qkL~p~v~l 344 (345)
+.++|.|++++.+.+
T Consensus 190 l~~sy~~k~~~~~~~ 204 (273)
T PF01459_consen 190 LTASYFQKVNDKLQL 204 (273)
T ss_dssp EEEEEEEESSTTEEE
T ss_pred EEEEEEEEeccceee
Confidence 999999999998875
No 10
>KOG3296|consensus
Probab=99.20 E-value=1.3e-11 Score=118.11 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=139.8
Q ss_pred EecCCCceEEEEEEEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEe-------ecc
Q psy5108 163 KWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLG-------YNG 235 (345)
Q Consensus 163 ~w~t~n~l~tei~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g-------~~g 235 (345)
..+++|.+..++-+.+.++|...+..++ + .+..++.++..+.+.......+...+|.+..++++. .+.
T Consensus 102 ~vD~~Gslna~l~~~l~~~Lr~K~~~q~--~---~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~ 176 (308)
T KOG3296|consen 102 DVDNDGSLNARLIHQLTDNLRSKVALQI--Q---QSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR 176 (308)
T ss_pred ecCCCCchhheeecccchhhHHHHHHHh--c---chhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc
Confidence 6888999999987777888776665544 1 112566777766666655556666788865655442 399
Q ss_pred eeEeEEEEEec-cCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEec
Q psy5108 236 WLCGYSLKFDS-KDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDL 314 (345)
Q Consensus 236 ~~lG~e~~yd~-~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~l 314 (345)
|.+|.|+.|.. .........++.+|...++.+++++.- ..++++||||.+++++.|+|+.++..-+++..+++++|++
T Consensus 177 LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~-~g~~~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l 255 (308)
T KOG3296|consen 177 LSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ-QGLTGTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL 255 (308)
T ss_pred ccccceeEeccCCCccccceeeeeeeeecceeeEEeccc-ccceehhhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence 99999999998 333457789999999999888888864 4678999999999999999999998878888888888887
Q ss_pred C-CCcEEEEEEcCCCeEEEEEEEEccCCcee
Q psy5108 315 E-NQASVRAKVNNASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 315 d-~~~~lKAKvnn~g~vgl~y~qkL~p~v~l 344 (345)
. +++.+|++||++|.+++.++.||-+.+++
T Consensus 256 ~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~ 286 (308)
T KOG3296|consen 256 PTAQSVFRGSVDSNWSVGAVLEKKLPLPLTL 286 (308)
T ss_pred cCccceEEEEeccCceehhhhHhhcCCCcee
Confidence 6 78999999999999999999999777765
No 11
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=98.97 E-value=2.2e-07 Score=88.82 Aligned_cols=140 Identities=16% Similarity=0.285 Sum_probs=105.4
Q ss_pred cceEEEEEEeccc--eeeeeeeeeeecCceEEeeeEEee---cceeEeEEEEEeccCccccceeEEeeEEcCceEEEEEe
Q psy5108 197 KTVKLSGEYKNSL--AAVNLESEFKSLNPVISAAGVLGY---NGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNV 271 (345)
Q Consensus 197 ks~kL~~~y~~~~--~~~~~~~~l~~~~P~v~~s~v~g~---~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l 271 (345)
..-.+.+.|..+. ..+.+++ | |.-+.++-+-+ +++..- +..+....+...+.+.+.|..+||++.+++
T Consensus 53 ~~y~f~a~y~~~~~~~~~~~~i--d---~~g~l~~~~~~~~~~~~~~k--~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~ 125 (279)
T cd07305 53 SSYQFGATYVGDKQYPFLQGDI--D---NDGNLNARIIHQLGDRLRSK--LQAQLQDSKFNMSQLELDYRGDDFTASLKL 125 (279)
T ss_pred CCcEeeeEEecCCCcEEEEEEe--C---CCCceeEEEEeccCcceEEE--EEEEecCCCceeEEEEEEEcCCceEEEEEE
Confidence 3567888888665 4443333 2 22222232222 344333 333444445578999999999999999996
Q ss_pred cCC------CceeeeEEEEccCceeEEEEEEEe--ccCCCceEEEEEEEecCCCcEEEEEEcCCCeEEEEEEEEccCCce
Q psy5108 272 DDG------KLFGGTVYQKLGPKLETGVQLAWS--SESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALS 343 (345)
Q Consensus 272 ~n~------~~~~~S~~~kv~~~~~vGae~~~~--~~~~~~~~~vG~ky~ld~~~~lKAKvnn~g~vgl~y~qkL~p~v~ 343 (345)
.|. ..+.++|.|+|.++|.+|+|+.|. .......+.+|++|.- ++.++.+.+++.+.+.++|.|+++|++.
T Consensus 126 ~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~s~~l~~~~~l~asY~~kvs~~l~ 204 (279)
T cd07305 126 ANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTA-GNWIASGQLGAQGGLHLSYYRKLSDKLQ 204 (279)
T ss_pred eCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEEEEEEcCCCeEEEEEEEEcccceE
Confidence 653 567999999999999999999999 4667888999999986 7899999999999999999999999987
Q ss_pred e
Q psy5108 344 L 344 (345)
Q Consensus 344 l 344 (345)
+
T Consensus 205 l 205 (279)
T cd07305 205 L 205 (279)
T ss_pred e
Confidence 6
No 12
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=97.69 E-value=0.002 Score=56.89 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=58.4
Q ss_pred EecCCCceEEEEEEEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceE-Ee--eeEE-e------
Q psy5108 163 KWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVI-SA--AGVL-G------ 232 (345)
Q Consensus 163 ~w~t~n~l~tei~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v-~~--s~v~-g------ 232 (345)
..++++.+.+.+.+++.+.+...+.+++... .....+++.+|+.+++++. +++.+|.+ +. ++++ +
T Consensus 74 ~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~-~~~~~Q~e~DY~G~Dft~~----lk~~Np~~~~~~~sGi~v~sylQsV 148 (161)
T TIGR00989 74 NLDNDGAVSTRLNYRWGDRTISKVQFQISGG-QPDMCQFEHDHLGDDFSAS----LKAINPSFLEKGLTGIFVGSYLQSV 148 (161)
T ss_pred EeCCCCCEEEEEEEeeCcceeEEEEEEecCC-CCceEEEEEEecCCeEEEE----EEEcCcccccccceEEEEEeeeehh
Confidence 6677788888877777788877777776432 2358899999999999874 45588986 33 5554 3
Q ss_pred ecceeEeEEEEEe
Q psy5108 233 YNGWLCGYSLKFD 245 (345)
Q Consensus 233 ~~g~~lG~e~~yd 245 (345)
.|+|++|.|+.|+
T Consensus 149 Tp~LaLG~E~~yq 161 (161)
T TIGR00989 149 TPRLGLGLEALWQ 161 (161)
T ss_pred CcceeeeeeeEeC
Confidence 2999999999884
No 13
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=94.22 E-value=1.5 Score=38.92 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=66.1
Q ss_pred ccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEecc-CCCceEEEEEEEecCCCcEEEEEEcC---
Q psy5108 251 LKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSE-SNDTKFAFGCKYDLENQASVRAKVNN--- 326 (345)
Q Consensus 251 ~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~-~~~~~~~vG~ky~ld~~~~lKAKvnn--- 326 (345)
+..|.|++-|..+...+-..+++.-.+.+=+-|.+++++..=+++....+ .....+++-++ -+|.++..|+-|
T Consensus 55 ~p~Y~FgA~y~~~~~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~---G~Dft~~lk~~Np~~ 131 (161)
T TIGR00989 55 LPPYAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQPDMCQFEHDHL---GDDFSASLKAINPSF 131 (161)
T ss_pred CCCceeeeEecCCcEEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCCCceEEEEEEec---CCeEEEEEEEcCccc
Confidence 34588999998877777778887677888888889888766555554422 23344443333 278888888777
Q ss_pred -----CCeEEEEEEEEccCCcee
Q psy5108 327 -----ASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 327 -----~g~vgl~y~qkL~p~v~l 344 (345)
.|.+.+.|.|.+.|++.|
T Consensus 132 ~~~~~sGi~v~sylQsVTp~LaL 154 (161)
T TIGR00989 132 LEKGLTGIFVGSYLQSVTPRLGL 154 (161)
T ss_pred ccccceEEEEEeeeehhCcceee
Confidence 468999999999999876
No 14
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=89.58 E-value=26 Score=35.71 Aligned_cols=71 Identities=17% Similarity=0.342 Sum_probs=50.5
Q ss_pred CCceeeeEEEEccCceeEEEEEEEecc-----------------------CCCceEEEEEEEecCCCcEEEEEE--c---
Q psy5108 274 GKLFGGTVYQKLGPKLETGVQLAWSSE-----------------------SNDTKFAFGCKYDLENQASVRAKV--N--- 325 (345)
Q Consensus 274 ~~~~~~S~~~kv~~~~~vGae~~~~~~-----------------------~~~~~~~vG~ky~ld~~~~lKAKv--n--- 325 (345)
-+.+..++.|+++|+|.+.+.+.|..= ++...+++|.+|++.+..++|+=+ +
T Consensus 286 P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~yd~sp 365 (435)
T PRK10716 286 PEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSP 365 (435)
T ss_pred CcEEEEEeEEecCCcEEEEEEEEEeeecccceEEEEeCCCcceecccccceeeeEEEeeEEEECCCCeEEEEeeEeccCC
Confidence 356788999999999999999988321 125678889999988888888754 1
Q ss_pred -------------CCCeEEEEEEEEccCCcee
Q psy5108 326 -------------NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 326 -------------n~g~vgl~y~qkL~p~v~l 344 (345)
+...++++...++++++++
T Consensus 366 v~~~~r~~~~Pd~dr~~~s~G~~y~~~~~~~v 397 (435)
T PRK10716 366 VPAQNRSISIPDQDRFWLSAGTTYAFNKDASV 397 (435)
T ss_pred CCcCcccccccCCCCeEEEeeeEEEcCCCcEE
Confidence 1223666666666665544
No 15
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=86.20 E-value=36 Score=33.41 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=63.3
Q ss_pred CceEEeeeEEee-------------cceeEeEEEEEeccCccccceeEEeeEEcCce---EEEEEecCCCceeeeEEEEc
Q psy5108 222 NPVISAAGVLGY-------------NGWLCGYSLKFDSKDAKLKANRLSLGFVGSDF---VFHTNVDDGKLFGGTVYQKL 285 (345)
Q Consensus 222 ~P~v~~s~v~g~-------------~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~---~~s~~l~n~~~~~~S~~~kv 285 (345)
.+.+.+.+-+|+ .++.+.+.+.|.+... +...+.+.-.-.+. .....+ -..+.+++-|.+
T Consensus 232 t~~~~g~~~~Gy~~~~~d~~~~~d~~g~~~~~~l~w~pt~~--t~~~l~~~r~~~~~~~~~~~~~~--~~~~~~~~~h~~ 307 (381)
T PF10082_consen 232 TGKTRGEAKVGYQRRDFDDPSRRDFSGPSWDASLTWSPTPK--TTVTLSASRSIEESTDAGGSYVR--TTSVSLGWTHQL 307 (381)
T ss_pred cCcEEEEEEEEEEEeeccCCCccCCCceEEEEEEEEeccCc--eEEEEEEEEEEcCcccCCCcEEE--EEEEEEEEEEEe
Confidence 566777777765 6778888888876554 34444444333222 111112 145678889999
Q ss_pred cCceeEEEEEEEeccC--------CCceEEEEEEEecCCCcEEEEE
Q psy5108 286 GPKLETGVQLAWSSES--------NDTKFAFGCKYDLENQASVRAK 323 (345)
Q Consensus 286 ~~~~~vGae~~~~~~~--------~~~~~~vG~ky~ld~~~~lKAK 323 (345)
.+++.+.+.+.|.... ....+.+|..|.+.+...+.+.
T Consensus 308 ~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~~~~~y~~~r~~~~~~~ 353 (381)
T PF10082_consen 308 TPRLSLSLSAGYENRDYQGSDREDDTYSAGLGLTYRLNRWLSLSAG 353 (381)
T ss_pred eeeEEEEEEEEEEEeEcCCCCceeeEEEEEEEEEEEecCCEEEEEE
Confidence 9999998888887542 2567888888887666666554
No 16
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=77.32 E-value=61 Score=30.01 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=35.7
Q ss_pred ecCCCceeeeEEEEccCcee--EEEEEEEeccCCCceEEEEEEEecCCCcEEEEE
Q psy5108 271 VDDGKLFGGTVYQKLGPKLE--TGVQLAWSSESNDTKFAFGCKYDLENQASVRAK 323 (345)
Q Consensus 271 l~n~~~~~~S~~~kv~~~~~--vGae~~~~~~~~~~~~~vG~ky~ld~~~~lKAK 323 (345)
..++.++.+++..+++++|. .|..+.+.........-|-..|.+|++..+.+|
T Consensus 58 ~~ng~E~~~~y~~k~~d~~~l~PG~~~~~~s~~~~yrPylk~~Y~fd~~~~~~~R 112 (218)
T PF06178_consen 58 VSNGNEFEISYRYKLNDNFTLQPGFSLESNSDGTQYRPYLKLGYKFDNGLSVSGR 112 (218)
T ss_dssp ---EEEEEEEE-EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEE
T ss_pred ccceeEEEEEEEEEcCCCEEEecceEEEECCCccEEeeEEEEEEEecCCEEEEEE
Confidence 44578899999999999754 555555554445666677777788888777665
No 17
>KOG3296|consensus
Probab=76.71 E-value=1.2 Score=43.42 Aligned_cols=93 Identities=13% Similarity=0.324 Sum_probs=64.7
Q ss_pred ccccceeEEeeEEcCceEEEEEecCCC-----ceeeeEEEEccCceeEEEEEEEec--cCCCceEEEEEEEecCCCcEEE
Q psy5108 249 AKLKANRLSLGFVGSDFVFHTNVDDGK-----LFGGTVYQKLGPKLETGVQLAWSS--ESNDTKFAFGCKYDLENQASVR 321 (345)
Q Consensus 249 ~~~tk~~~~lgY~~~d~~~s~~l~n~~-----~~~~S~~~kv~~~~~vGae~~~~~--~~~~~~~~vG~ky~ld~~~~lK 321 (345)
+++-.+-+-..|...|+++.+..-|-+ .+.++|.|.|.++|.+|+|+-|.. ......++.+++|.. .....-
T Consensus 132 ~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~-~~~~~~ 210 (308)
T KOG3296|consen 132 SKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEH-SNWDAT 210 (308)
T ss_pred hhhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeee-cceeeE
Confidence 344456677778888888887765422 346788999999999999999998 346889999999975 333344
Q ss_pred EEEcCCCeEEEEEEEEccCCce
Q psy5108 322 AKVNNASQIGLGYSQKLNDALS 343 (345)
Q Consensus 322 AKvnn~g~vgl~y~qkL~p~v~ 343 (345)
+.+...| .-+.|.|++.+.+.
T Consensus 211 ~t~g~~g-~~~~y~~r~~~~~~ 231 (308)
T KOG3296|consen 211 VTLGQQG-LTGTYYQRAVEKLQ 231 (308)
T ss_pred Eeccccc-ceehhhhhhhhhhc
Confidence 4444443 33456677666654
No 18
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=76.04 E-value=22 Score=36.49 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=63.1
Q ss_pred cCceE-EeeeEEe-ecceeEeEEEEEeccCccccceeEEeeEEcCceEEEEE-ecCCCceeeeEEEEccCceeEEEEEEE
Q psy5108 221 LNPVI-SAAGVLG-YNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTN-VDDGKLFGGTVYQKLGPKLETGVQLAW 297 (345)
Q Consensus 221 ~~P~v-~~s~v~g-~~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~-l~n~~~~~~S~~~kv~~~~~vGae~~~ 297 (345)
.-|.. +.+...+ .++|++.+.+.|--=+ ++.+..+........+.-... ..|.-.+....=|+++++|..-+-+.|
T Consensus 283 ~lP~~~el~~~~~~~d~w~~~~s~~wT~WS-~f~~l~~~~~~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragiay 361 (440)
T COG2067 283 SLPASAELSGQHKVADQWAIHGSVKWTDWS-SFDKLDFVFTFGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIAY 361 (440)
T ss_pred ecCcEEEEeeeeccCCCeEEEEEEEEeecc-CCceEEEEEcCCCccccccccccccccEEeeeceeEcCccceEeeeeee
Confidence 44543 3333333 3889999988874322 344444444321222222222 445566777788889999998888889
Q ss_pred eccC-------------CCceEEEEEEEecCCCcEEEE
Q psy5108 298 SSES-------------NDTKFAFGCKYDLENQASVRA 322 (345)
Q Consensus 298 ~~~~-------------~~~~~~vG~ky~ld~~~~lKA 322 (345)
+.+. ...-+++|..|+++++..|.+
T Consensus 362 D~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~ 399 (440)
T COG2067 362 DQSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA 399 (440)
T ss_pred cCCCCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence 8653 244678899999998888775
No 19
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=70.48 E-value=97 Score=29.22 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=9.3
Q ss_pred ceEEEEEEEecCCCcEEEE
Q psy5108 304 TKFAFGCKYDLENQASVRA 322 (345)
Q Consensus 304 ~~~~vG~ky~ld~~~~lKA 322 (345)
..+.+|++|.+.+...+.+
T Consensus 237 ~~~~lga~Y~~~~~~~~~~ 255 (329)
T cd00342 237 NGYELGATYQLTPALRLGA 255 (329)
T ss_pred EEEEEeEEEEcCCceEEEE
Confidence 3455555555544444443
No 20
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=70.24 E-value=69 Score=35.23 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=58.1
Q ss_pred ecceeEeEEEEEeccCccccceeEEeeEEcCce-EEEEEe---c------------------C-CCceeeeEEEEccCce
Q psy5108 233 YNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDF-VFHTNV---D------------------D-GKLFGGTVYQKLGPKL 289 (345)
Q Consensus 233 ~~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~-~~s~~l---~------------------n-~~~~~~S~~~kv~~~~ 289 (345)
.+.|.+.+++-||+...++.+.++.+.|..+.. .+.+.. . + -..+..|..-+++++|
T Consensus 612 ~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~w 691 (778)
T PRK03761 612 SDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASWPIADRW 691 (778)
T ss_pred cCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEEEecCcE
Confidence 488999999999999999999999999986654 222210 0 0 1346678788899999
Q ss_pred eEEEEEEEeccCC-CceEEEEEEE
Q psy5108 290 ETGVQLAWSSESN-DTKFAFGCKY 312 (345)
Q Consensus 290 ~vGae~~~~~~~~-~~~~~vG~ky 312 (345)
.+.+...|+...+ .....+|.+|
T Consensus 692 ~~~g~~~ydl~~~~~~~~~~Gl~Y 715 (778)
T PRK03761 692 SIVGAYYYDTKANKPAEQLLGLQY 715 (778)
T ss_pred EEEEEEEeeCcCChhhhhhcCeee
Confidence 9999999998753 3344455555
No 21
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=70.00 E-value=1.2e+02 Score=30.06 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.8
Q ss_pred CceeeeEEEEccCceeEEEEEEEec
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSS 299 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~ 299 (345)
..+..++.|++.++|.+.+.+.|..
T Consensus 270 ~~~~~g~~~~~~~~~~l~~d~~~~~ 294 (427)
T PF03349_consen 270 ASLSLGVAYRFTDKLLLSADYEWTD 294 (427)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred eeEEEEEEEecCCCEEEEEEEEEEE
Confidence 4578899999999999999999964
No 22
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=69.03 E-value=1e+02 Score=28.77 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=23.5
Q ss_pred CceeEEEEEEEecc-----CCCceEEEEEEEecCCCcEEEEEE
Q psy5108 287 PKLETGVQLAWSSE-----SNDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 287 ~~~~vGae~~~~~~-----~~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
++|.+.++..+... .....++||++|.|.+.+.+.+.+
T Consensus 261 ~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~a~y 303 (311)
T PF13609_consen 261 GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSLYAEY 303 (311)
T ss_dssp TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEEEEEE
Confidence 44555555544322 236777777777777777777654
No 23
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=67.99 E-value=1e+02 Score=28.62 Aligned_cols=109 Identities=14% Similarity=0.212 Sum_probs=67.6
Q ss_pred cceeEeEEEEEeccCc-------------cccceeEEeeEEcC--ceEEEEEecC----C---CceeeeEEEEccCceeE
Q psy5108 234 NGWLCGYSLKFDSKDA-------------KLKANRLSLGFVGS--DFVFHTNVDD----G---KLFGGTVYQKLGPKLET 291 (345)
Q Consensus 234 ~g~~lG~e~~yd~~~~-------------~~tk~~~~lgY~~~--d~~~s~~l~n----~---~~~~~S~~~kv~~~~~v 291 (345)
.+|.+++...++.... ....+.+++.|..+ .+.+++.... . +.+..+.-..+ ..+.+
T Consensus 153 ~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~y~~~~~~~~~~~~~~~ga~y~~-~~~~l 231 (311)
T PF13609_consen 153 GGFSFGASYGPGEDDDNNGIGGSVAGDSDDDDVYGAGASYSFGGFGLTVAAGYSSADDNGGDNDAWGVGASYNF-GGFTL 231 (311)
T ss_dssp TTEEEEEEEEEETTCCC-TTBSS-TCCGCTTEEEEEEEEEEET-SSEEEEEEEEEEECCETCEEEEEEEEEEEC-SSEEE
T ss_pred CceEEEEEEeccCCccccccccccccccccccceEEEEEEEcCCcceEEEeeeecccccchheeeEEeeEEEEE-CcEEE
Confidence 5677766665543321 23467788888865 5665554321 1 12233333334 56777
Q ss_pred EEEEEEecc------CCCceEEEEEEEecCCCcEEEEEEcC----------CCeEEEEEEEEccCCcee
Q psy5108 292 GVQLAWSSE------SNDTKFAFGCKYDLENQASVRAKVNN----------ASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 292 Gae~~~~~~------~~~~~~~vG~ky~ld~~~~lKAKvnn----------~g~vgl~y~qkL~p~v~l 344 (345)
+++...... .....+.++..|.+ +...+.+.... .-.+++.++++|.|++++
T Consensus 232 ~a~y~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~ 299 (311)
T PF13609_consen 232 GAEYGQADNDGSGGDSDQDAYYVGAAYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSL 299 (311)
T ss_dssp EEEEEEEEEECCCCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEecCccccccceEEEEEEEEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEE
Confidence 777665321 24678889999999 66777776432 345899999999999876
No 24
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=65.77 E-value=90 Score=32.14 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=23.3
Q ss_pred CCceeeeEEEEccCceeEEEEEEEec
Q psy5108 274 GKLFGGTVYQKLGPKLETGVQLAWSS 299 (345)
Q Consensus 274 ~~~~~~S~~~kv~~~~~vGae~~~~~ 299 (345)
-+.+..+++|++.|+|.+...+.|..
T Consensus 285 P~~~el~~~~~~~d~w~~~~s~~wT~ 310 (440)
T COG2067 285 PASAELSGQHKVADQWAIHGSVKWTD 310 (440)
T ss_pred CcEEEEeeeeccCCCeEEEEEEEEee
Confidence 46788999999999999999999974
No 25
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=61.66 E-value=70 Score=31.15 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=45.5
Q ss_pred ceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCCcEEEEEEcCC--Ce-EEEEEEEE
Q psy5108 276 LFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNA--SQ-IGLGYSQK 337 (345)
Q Consensus 276 ~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~~lKAKvnn~--g~-vgl~y~qk 337 (345)
.....+=.++++++.+.++..++...... -.+..+|+|.+...+++++++. +. +++.|+.+
T Consensus 315 ~~~~~~gk~l~~~l~i~~~~~~~~~~~~~-~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~~ 378 (379)
T PF04357_consen 315 DTSVTVGKYLSDRLYISYQFGVDLGGSQT-GEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRKD 378 (379)
T ss_pred ceEEEEEEecCCCEEEEEEEeecCCCCce-EEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEEE
Confidence 34555666689999998887776543222 5777899999999999999665 76 77777665
No 26
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=61.07 E-value=1.8e+02 Score=28.84 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=31.0
Q ss_pred CceeeeEEEEccCceeEEEEEEEeccC-------------CCceEEEEEEEecCCCcEE
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSSES-------------NDTKFAFGCKYDLENQASV 320 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~~~-------------~~~~~~vG~ky~ld~~~~l 320 (345)
-.++...-++++|+|.+-+-+.|+... ....+++|..|++.+...+
T Consensus 327 ~~~~lG~~Y~~~~~l~lr~G~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~~~~~~~~ 385 (427)
T PF03349_consen 327 WVYRLGAEYKFNDKLTLRAGYAYDSSPIPDETRDPLLPDTDRHWLSAGAGYRFSKNLSL 385 (427)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESSSSEEE
T ss_pred heeeeeeEEEcCcCEEEEEEEEEeccccCccccchhhccCCcEEEEEeeEEEcCCCeEE
Confidence 345666667788888877777777543 2567888888887655443
No 27
>PRK04423 organic solvent tolerance protein; Provisional
Probab=59.48 E-value=1.3e+02 Score=33.31 Aligned_cols=80 Identities=9% Similarity=0.137 Sum_probs=58.3
Q ss_pred ecceeEeEEEEEeccCccccceeEEeeEEcCc-eEEEEE---ec-------CCCceeeeEEEEccCceeEEEEEEEeccC
Q psy5108 233 YNGWLCGYSLKFDSKDAKLKANRLSLGFVGSD-FVFHTN---VD-------DGKLFGGTVYQKLGPKLETGVQLAWSSES 301 (345)
Q Consensus 233 ~~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d-~~~s~~---l~-------n~~~~~~S~~~kv~~~~~vGae~~~~~~~ 301 (345)
.+.|.+..++.||+..+.+.+.++.++|..++ ..+.+. .. +-..+.+|.-.+++++|.+.+...|+...
T Consensus 628 ~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~W~~~g~~~ydl~~ 707 (798)
T PRK04423 628 NDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPRWSAVGRYYYSLLD 707 (798)
T ss_pred cCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCCEEEEEEEEEeCcC
Confidence 48899999999999888778888888886542 222222 11 12567888888899999999999999875
Q ss_pred C-CceEEEEEEE
Q psy5108 302 N-DTKFAFGCKY 312 (345)
Q Consensus 302 ~-~~~~~vG~ky 312 (345)
+ .....+|.+|
T Consensus 708 ~~~~e~~~GleY 719 (798)
T PRK04423 708 KKPLEIIGGVQW 719 (798)
T ss_pred CcchhhhcCcEE
Confidence 3 3444555555
No 28
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=55.06 E-value=3e+02 Score=29.70 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=59.9
Q ss_pred ccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCce--EEeeeEEe-ecceeEeEEEEEeccCccccceeE
Q psy5108 180 DGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPV--ISAAGVLG-YNGWLCGYSLKFDSKDAKLKANRL 256 (345)
Q Consensus 180 ~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~--v~~s~v~g-~~g~~lG~e~~yd~~~~~~tk~~~ 256 (345)
...++.+...|.|. ..=+..+..+|.+|.+.- ..++|. ..-. ++.++-+. .++|.+-+-..++.-+.... -
T Consensus 431 ~R~~~~l~~~~~~~-~~l~l~~~~~~~~DdY~~-t~~GL~-~~~~~~~~ld~~y~~~~~l~~~af~~~q~~~s~Q~---g 504 (637)
T PF11854_consen 431 DRTKLELRANYSPF-EDLSLSLSGRYANDDYDD-TDIGLT-ESDDYGYDLDASYQPSDDLSLYAFYNQQWIDSDQA---G 504 (637)
T ss_pred ccceeEEEeeeccc-cceEEeEEEEEccCCCCC-cccccc-cceeeeeeeeEEEEECCCeEEEEEEEeEeehhhhc---c
Confidence 34556677777665 233677777888776654 224442 1111 11222221 24444444444443332211 1
Q ss_pred EeeEEcCceEEEEEecC-CCceeeeEEEE--ccCceeEEEEEEEeccCCCceE
Q psy5108 257 SLGFVGSDFVFHTNVDD-GKLFGGTVYQK--LGPKLETGVQLAWSSESNDTKF 306 (345)
Q Consensus 257 ~lgY~~~d~~~s~~l~n-~~~~~~S~~~k--v~~~~~vGae~~~~~~~~~~~~ 306 (345)
...+..++| ...++| ...+++.+-+. +.++|.+|+..+|..+..++..
T Consensus 505 s~~~~~~~W--~~~~~D~~~~~G~G~~~~~l~~~kL~lg~dYsys~~~s~~~~ 555 (637)
T PF11854_consen 505 SQNFSTPDW--TSDTEDKVTTVGAGFSYQGLMDDKLSLGLDYSYSDSDSDTDV 555 (637)
T ss_pred ccCccCCCc--cccccceeEEEEeceEeecccCccEEEeeeEEEecCccceEe
Confidence 122333444 334444 44555544444 6788999999999876554444
No 29
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=53.73 E-value=2.3e+02 Score=27.86 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=38.3
Q ss_pred eeeEEEEccCceeEEEEEEEecc---------CCCceEEEEEEEecCCCcEEEEEEcCCC
Q psy5108 278 GGTVYQKLGPKLETGVQLAWSSE---------SNDTKFAFGCKYDLENQASVRAKVNNAS 328 (345)
Q Consensus 278 ~~S~~~kv~~~~~vGae~~~~~~---------~~~~~~~vG~ky~ld~~~~lKAKvnn~g 328 (345)
..+|=.++.+++.+-+|..+... +..+-+.+|++|++.+.+.+-.-+-.+.
T Consensus 241 ~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~ 300 (319)
T PF11383_consen 241 GLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENL 300 (319)
T ss_pred EEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecc
Confidence 45666677888888888888653 2368899999999988888877655444
No 30
>PF06082 DUF940: Bacterial putative lipoprotein (DUF940); InterPro: IPR010344 This entry consists of hypothetical bacterial proteins several of which are described as putative lipoproteins.
Probab=51.99 E-value=3.4e+02 Score=29.39 Aligned_cols=63 Identities=29% Similarity=0.517 Sum_probs=45.6
Q ss_pred eeeeEEEEccCceeEEEEEEEeccC----------CCceEEEEEEEecCCCcEEEEEEcCCCeEEEEEEEEccCC
Q psy5108 277 FGGTVYQKLGPKLETGVQLAWSSES----------NDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDA 341 (345)
Q Consensus 277 ~~~S~~~kv~~~~~vGae~~~~~~~----------~~~~~~vG~ky~ld~~~~lKAKvnn~g~vgl~y~qkL~p~ 341 (345)
|.+--||...+.+. +.+.|+... ..+.+.+|..|++.+...+.+-......+++.+.-.++++
T Consensus 167 FgGvey~~~~~~l~--l~aEYd~~~y~~e~~~~~~~~sp~N~G~~y~l~~~~~~~~~~~~g~~~~~~~~~~~n~~ 239 (658)
T PF06082_consen 167 FGGVEYQTPWDPLR--LKAEYDSNDYNSEPANGFEQSSPWNFGASYRLWDHLDLSASYQRGNTIGFGLSLSLNPN 239 (658)
T ss_pred cCceEeecccCCEE--EEEEECCCccccccccCCCcCCceeeeeEEEeccceeEEEEEecCCEEEEEEEEEecCc
Confidence 55556775555554 455565443 2345899999999999999999988888888887777664
No 31
>PRK04423 organic solvent tolerance protein; Provisional
Probab=51.34 E-value=2.8e+02 Score=30.82 Aligned_cols=103 Identities=10% Similarity=0.032 Sum_probs=67.1
Q ss_pred CceEEEEEEEecccceEEEEEEEecCCCC-cceEEEEEEecc---ceeeeeeeeeee---cCc--eEEeeeEEee-ccee
Q psy5108 168 NVLTTEVSSNIIDGARLAANTSFAPQTGD-KTVKLSGEYKNS---LAAVNLESEFKS---LNP--VISAAGVLGY-NGWL 237 (345)
Q Consensus 168 n~l~tei~~~l~~GLK~~l~~~~~p~~~~-ks~kL~~~y~~~---~~~~~~~~~l~~---~~P--~v~~s~v~g~-~g~~ 237 (345)
..+.+++.+++.+++.+.....|.|+.+. ..+.+.++|.-+ .++++-.-.-+. ..+ .+..++.+.. ++|.
T Consensus 617 SD~v~~~~~~~~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~W~ 696 (798)
T PRK04423 617 SAWVADANYMINDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPRWS 696 (798)
T ss_pred cceEEEEEEEecCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCCEE
Confidence 44566666668889999999999887432 133345566532 122211100000 011 2455666654 9999
Q ss_pred EeEEEEEeccCccccceeEEeeEEcCceEEEEE
Q psy5108 238 CGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTN 270 (345)
Q Consensus 238 lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~ 270 (345)
+.++..||....+....-+++.|...-|.+.+.
T Consensus 697 ~~g~~~ydl~~~~~~e~~~GleY~~~Cw~~~l~ 729 (798)
T PRK04423 697 AVGRYYYSLLDKKPLEIIGGVQWDSCCLAVRAL 729 (798)
T ss_pred EEEEEEEeCcCCcchhhhcCcEEcCCceEEEEE
Confidence 999999999998888999999999988877773
No 32
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=51.09 E-value=1.1e+02 Score=23.34 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=17.9
Q ss_pred ceeEEEEEEEeccCCCceEEEEEEEecCCCcEEEEEEc
Q psy5108 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVN 325 (345)
Q Consensus 288 ~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~~lKAKvn 325 (345)
++.+++-+.+.. ++..+++|++|.++++..+++.+.
T Consensus 26 ~~~~~~g~G~y~--g~~A~A~G~~~~~~~~~~~~~~~s 61 (78)
T PF03895_consen 26 KFSVGVGVGTYR--GESAVAVGASYRPNENVMVNAGVS 61 (78)
T ss_dssp -EEEEEEEEEET--TEEEEEEEEEEE-TSSEEEEEEEE
T ss_pred cEEEEEEEEeeC--CcccEEEEEEEEeCCCEEEEEEEE
Confidence 444555544442 455555566665555555555544
No 33
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=48.68 E-value=2.4e+02 Score=26.55 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=30.8
Q ss_pred ceeeeEEEEccCceeEEEEEEEeccC-------CCceEEEEEEEecCCCcEEEE
Q psy5108 276 LFGGTVYQKLGPKLETGVQLAWSSES-------NDTKFAFGCKYDLENQASVRA 322 (345)
Q Consensus 276 ~~~~S~~~kv~~~~~vGae~~~~~~~-------~~~~~~vG~ky~ld~~~~lKA 322 (345)
.+.++.-.++++++.+.+...+.... ....+.||+.|.|.+.+.+-+
T Consensus 238 ~~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~~~~~~l~~ 291 (329)
T cd00342 238 GYELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYALSKRTDLYA 291 (329)
T ss_pred EEEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEeeccchhhee
Confidence 34555556677677777766665321 346788899998887766654
No 34
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=47.61 E-value=2.8e+02 Score=27.06 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=17.0
Q ss_pred CceeEEEEEEEeccCCCceEEEEEEEe
Q psy5108 287 PKLETGVQLAWSSESNDTKFAFGCKYD 313 (345)
Q Consensus 287 ~~~~vGae~~~~~~~~~~~~~vG~ky~ 313 (345)
+.+.+++.+.|... ....+.++++|.
T Consensus 332 ~~~~~~~~~~y~~~-r~~~~~~~y~~~ 357 (381)
T PF10082_consen 332 DTYSAGLGLTYRLN-RWLSLSAGYRYE 357 (381)
T ss_pred eEEEEEEEEEEEec-CCEEEEEEEEEE
Confidence 34667777777763 566666666665
No 35
>PRK15318 intimin-like protein SinH; Provisional
Probab=45.27 E-value=4.1e+02 Score=29.15 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=50.9
Q ss_pred cceeEeEEEEEecc-CccccceeEEeeEEcCceEEEEEe-cCCCceeee-----EEEEccCceeEE------------EE
Q psy5108 234 NGWLCGYSLKFDSK-DAKLKANRLSLGFVGSDFVFHTNV-DDGKLFGGT-----VYQKLGPKLETG------------VQ 294 (345)
Q Consensus 234 ~g~~lG~e~~yd~~-~~~~tk~~~~lgY~~~d~~~s~~l-~n~~~~~~S-----~~~kv~~~~~vG------------ae 294 (345)
++|++|+.+-||.. ++.-.+..+++-|-.+.+.+++.. .....++.| |..|.-..|++. ++
T Consensus 168 ~~wMlG~NaFyD~d~s~~h~R~GlGaE~w~dyLkLsAN~Y~~LS~Wk~S~d~~dy~ERPAnG~DIraegyLPayPqLG~k 247 (730)
T PRK15318 168 GKWLLGGNIFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSEDFDFYEERPARGWDIRAEGWLPAYPQLGGK 247 (730)
T ss_pred CCEEEEeEEEEccCCCCCcceeeeeeEEEecceEEEEEeeecccccccccccCCcccccCCceeeEeeEecccCcccCce
Confidence 67788888888754 334466777777776666665541 111111111 122222223332 33
Q ss_pred EEE--------------eccCCCceEEEEEEEecCCCcEEEEE
Q psy5108 295 LAW--------------SSESNDTKFAFGCKYDLENQASVRAK 323 (345)
Q Consensus 295 ~~~--------------~~~~~~~~~~vG~ky~ld~~~~lKAK 323 (345)
+.| +..++-..+++|..|.+-|-.+|.+.
T Consensus 248 l~YEQY~Gd~V~LFg~~~~qknP~A~T~GlnYTPvPLvTl~~~ 290 (730)
T PRK15318 248 LVYEQYYGDEVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTD 290 (730)
T ss_pred EEEEEecCceeeecCCCCcccCcceEEEeeeecccccEEEeec
Confidence 333 12234688999999998898888874
No 36
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=43.58 E-value=2.3e+02 Score=31.24 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=66.2
Q ss_pred CceEEEEEEEecccceEEEEEEEecCCCC-cceEEEEEEeccce---eeeeee---e-ee--e---------cCc--eEE
Q psy5108 168 NVLTTEVSSNIIDGARLAANTSFAPQTGD-KTVKLSGEYKNSLA---AVNLES---E-FK--S---------LNP--VIS 226 (345)
Q Consensus 168 n~l~tei~~~l~~GLK~~l~~~~~p~~~~-ks~kL~~~y~~~~~---~~~~~~---~-l~--~---------~~P--~v~ 226 (345)
..+.+++.+++.+.+.+..+..|.|++.. ......+.|..+.. .++-.- . +. . ..+ .+.
T Consensus 601 Sd~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (778)
T PRK03761 601 SVWAGDTYWRISDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVG 680 (778)
T ss_pred chheeEeEEEecCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceee
Confidence 34555555557788888888888876542 24555555653322 111100 0 00 0 000 134
Q ss_pred eeeEEee-cceeEeEEEEEeccCccccceeEEeeEEcCceEEEEEe
Q psy5108 227 AAGVLGY-NGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNV 271 (345)
Q Consensus 227 ~s~v~g~-~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l 271 (345)
.++.+.. +.|.+.++..||..........+++.|...-|.+.+..
T Consensus 681 ~s~~~~l~~~w~~~g~~~ydl~~~~~~~~~~Gl~Y~~~Cw~~~~~~ 726 (778)
T PRK03761 681 AVASWPIADRWSIVGAYYYDTKANKPAEQLLGLQYNSCCWAIGVGY 726 (778)
T ss_pred EEEEEEecCcEEEEEEEEeeCcCChhhhhhcCeeecCceEEEEEEE
Confidence 4666654 99999999999999999899999999988877776654
No 37
>PRK10993 outer membrane protease; Reviewed
Probab=42.65 E-value=1.1e+02 Score=30.03 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred EecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeEE--EEEeccCccccceeE----EeeEEcC
Q psy5108 190 FAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYS--LKFDSKDAKLKANRL----SLGFVGS 263 (345)
Q Consensus 190 ~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e--~~yd~~~~~~tk~~~----~lgY~~~ 263 (345)
+.|.++.|-.+|.-++.+-.+ ++++++.++. +.|.++++ +.....++.+..+.. .-.|+..
T Consensus 52 Y~~~~g~kvSqLdW~~~n~~i-ik~~~~~~~~------------~~lsl~a~gw~~l~s~~G~M~DyDWl~~~~~~wt~~ 118 (314)
T PRK10993 52 YDEEGGRKLSQLDWKIKNAAI-IKGDINWDLL------------PRLSLGASGWTTLASGGGHMVDYDWLDSSQPGWTDR 118 (314)
T ss_pred ecCCCCcEEEEeeccccCceE-EEeecccccc------------cceEEeeeEEEEEecCCCccccccccCCCCCCCcce
Q ss_pred ceEEEEEec--CCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCC---cEEEEEEcCCCeEEEEEEEEc
Q psy5108 264 DFVFHTNVD--DGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQ---ASVRAKVNNASQIGLGYSQKL 338 (345)
Q Consensus 264 d~~~s~~l~--n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~---~~lKAKvnn~g~vgl~y~qkL 338 (345)
..+-...++ +.-++.+.++---.++..+|+-+.|. ..+..--+-|+.|..+++ ..+=. =-++.++.+|+|++
T Consensus 119 S~h~~t~l~ya~e~dln~~~w~l~~~~yklG~~aGyq-y~~~sw~A~GG~y~Y~~~~~r~~~g~--fPd~~~~I~Y~Q~f 195 (314)
T PRK10993 119 SHHPDTDLNYANEFDLNLKGWLLQNPNYRLGVMAGYQ-ETRFSWTAYGGSYIYSNGGFRDDIGT--FPDGERGIGYKQRF 195 (314)
T ss_pred ecCCCCchhhhhhcceecceeeecCCCceeeeEeeeE-EEeceeEccCceEEcCCCCCCCCccc--cCCCccceeeEEEe
No 38
>PRK09980 ompL outer membrane porin L; Provisional
Probab=40.18 E-value=1.1e+02 Score=28.78 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=35.9
Q ss_pred cCCCceeeeEE-EEccCceeEEEEEEEecc--CCCceEEEEEEEecCCCcEEEEEEc
Q psy5108 272 DDGKLFGGTVY-QKLGPKLETGVQLAWSSE--SNDTKFAFGCKYDLENQASVRAKVN 325 (345)
Q Consensus 272 ~n~~~~~~S~~-~kv~~~~~vGae~~~~~~--~~~~~~~vG~ky~ld~~~~lKAKvn 325 (345)
.++.++.+||. -|++++|.+---+.+... ......-|-.+|.++++..+.+|..
T Consensus 69 ~~~~E~~~sY~~~k~~d~~tl~PG~~~~s~s~~~~Y~PyLr~~y~f~~~~~~~~RYR 125 (230)
T PRK09980 69 HGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNR 125 (230)
T ss_pred ccceEEEEEEEeEecCCCEEEecceEEEecCCCceEeeEEEEEEEECCCeEEEEEee
Confidence 35788888995 499998665444444443 3455555777777777777777655
No 39
>PF04453 OstA_C: Organic solvent tolerance protein; InterPro: IPR007543 This family is involved in organic solvent tolerance in bacteria. The region contains several highly conserved, potentially catalytic, residues. ostA is one of a number of genes that confer organic solvent tolerance in Escherichia coli [, ]. This protein has significant medical importance since endoscopes are disinfected by pre-cleaning and soaking them in glutaraldehyde. Tolerant bacteria may, therefore, survive this disinfecting procedure [].; GO: 0010033 response to organic substance, 0016044 cellular membrane organization, 0019867 outer membrane
Probab=39.71 E-value=2.2e+02 Score=27.73 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=35.9
Q ss_pred CceEEeeeEEeecceeEeEEEEEeccCccccceeEEeeEEcC-ceEEEE
Q psy5108 222 NPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGS-DFVFHT 269 (345)
Q Consensus 222 ~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~-d~~~s~ 269 (345)
.|++....+-..++|.+..++.||+....+.+.++.+.|..+ .+.+.+
T Consensus 306 Sd~~~~~~~~~~~~l~l~~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (388)
T PF04453_consen 306 SDLVAELSLSPNDNLSLSSDTQYDPYDNRISRSNVSLSYRPDRGFSLNL 354 (388)
T ss_pred cceeEEEEEEecCCEEEEEEEEECCCCCceEEEEEEEEEEcCCCcEEEE
Confidence 344433334455899999999999999999999999999887 444433
No 40
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=34.72 E-value=5.1e+02 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=31.4
Q ss_pred ceeeeEEEEccCceeEEEEEEEeccC-------------CCceEEEEEEEecCCCcEEEE
Q psy5108 276 LFGGTVYQKLGPKLETGVQLAWSSES-------------NDTKFAFGCKYDLENQASVRA 322 (345)
Q Consensus 276 ~~~~S~~~kv~~~~~vGae~~~~~~~-------------~~~~~~vG~ky~ld~~~~lKA 322 (345)
.++...=++++++|.+-+-+.|+.+. ....+++|..|++.++..|.+
T Consensus 340 ~~~~G~~Y~~n~~l~LRaG~~yd~spv~~~~r~~~~Pd~dr~~~s~G~~y~~~~~~~vd~ 399 (435)
T PRK10716 340 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDV 399 (435)
T ss_pred EEEeeEEEECCCCeEEEEeeEeccCCCCcCcccccccCCCCeEEEeeeEEEcCCCcEEEE
Confidence 34555566788888877777777331 366788888888876655543
No 41
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=33.76 E-value=95 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=35.8
Q ss_pred CceeeeEEEEccCceeEEEEEEEeccC--CCceEEEEEEEecCC
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSSES--NDTKFAFGCKYDLEN 316 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~~~--~~~~~~vG~ky~ld~ 316 (345)
-.+.+..-.+|+++|.+|+.+.++... ++..+.+-.+|.+++
T Consensus 298 y~l~a~~eyrls~~~~lGg~~~~~~s~dY~~~~~~lylRY~f~~ 341 (342)
T PF05420_consen 298 YSLRAAVEYRLSPHWFLGGGLDIDNSGDYNPSHAMLYLRYSFDP 341 (342)
T ss_pred EEEEEEEEEEecCCEEEEEEEehhhcCCCCcceEEEEEEEeccC
Confidence 346788889999999999999999876 488899999998875
No 42
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=33.06 E-value=4e+02 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=12.7
Q ss_pred EEEEeeecCCCeeeeecccc
Q psy5108 116 KIDLKTKTDSGVEFNSGGTA 135 (345)
Q Consensus 116 ~ldvkTkt~ngv~ft~~g~~ 135 (345)
.|.+.-...||+.|.+.++.
T Consensus 26 Ri~~sh~f~nG~g~~~E~k~ 45 (218)
T PF06178_consen 26 RIKVSHRFDNGFGFSVEAKW 45 (218)
T ss_dssp EEEEEEE-TTSEEEEEEEEE
T ss_pred EEEEEEEccCCcEEEEEEEe
Confidence 45566677788877776644
No 43
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=31.55 E-value=3.9e+02 Score=24.02 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=34.5
Q ss_pred eeeEEEEccCceeEEEEEEEec---------------cCCCceEEEEEEEecCCCcEEEEEEc
Q psy5108 278 GGTVYQKLGPKLETGVQLAWSS---------------ESNDTKFAFGCKYDLENQASVRAKVN 325 (345)
Q Consensus 278 ~~S~~~kv~~~~~vGae~~~~~---------------~~~~~~~~vG~ky~ld~~~~lKAKvn 325 (345)
...+-++++++|.++++..+.. ......+..|..|.+.++..|.+.+.
T Consensus 168 ~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~gv~y~~~~~~~l~~~~~ 230 (248)
T PF13557_consen 168 NFALSYALTPKLSLGLEGYGYYDQLTDDKGNGVDNGSRQNSFYLGPGVSYQLSPNLSLDAGVG 230 (248)
T ss_pred EEEEEEEcCcceEEeEEeEEEEeeccccccCCccCCCccceEEEEEEEEEEEcCCeEEEEEEE
Confidence 3445667788999999888432 12467788899999988877777654
No 44
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=29.11 E-value=4.2e+02 Score=23.74 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=8.9
Q ss_pred EEEEEEEEccCCcee
Q psy5108 330 IGLGYSQKLNDALSL 344 (345)
Q Consensus 330 vgl~y~qkL~p~v~l 344 (345)
++......+.|++.|
T Consensus 211 ~~~gv~y~~~~~~~l 225 (248)
T PF13557_consen 211 LGPGVSYQLSPNLSL 225 (248)
T ss_pred EEEEEEEEEcCCeEE
Confidence 556666666665544
No 45
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=28.08 E-value=1.6e+02 Score=28.19 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=48.0
Q ss_pred cceeEeEEEEEeccCccccceeEEeeEEc------CceEEEEEecC-CCceeeeEEEEccCceeEEEEEEE
Q psy5108 234 NGWLCGYSLKFDSKDAKLKANRLSLGFVG------SDFVFHTNVDD-GKLFGGTVYQKLGPKLETGVQLAW 297 (345)
Q Consensus 234 ~g~~lG~e~~yd~~~~~~tk~~~~lgY~~------~d~~~s~~l~n-~~~~~~S~~~kv~~~~~vGae~~~ 297 (345)
..|.+|+|+=|-+.+.. -..+.+++|.. .-+++++++|. ..-+..+|--|+++...+..++.+
T Consensus 190 ~r~S~GaE~yys~~~ks-~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~~SrfdF 259 (260)
T PF12519_consen 190 GRFSAGAELYYSALNKS-PGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAFCSRFDF 259 (260)
T ss_pred ceEeeccEEEEEeeccC-CcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceEEeeccc
Confidence 48899999999876665 56788899853 35889999988 556778888888888777666543
No 46
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=24.66 E-value=3.1e+02 Score=20.74 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=24.1
Q ss_pred eeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEe
Q psy5108 277 FGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYD 313 (345)
Q Consensus 277 ~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ 313 (345)
+...+.+++++++.+-+.+++. ..++..+.+|..|.
T Consensus 42 ~A~G~~~~~~~~~~~~~~~s~~-~~~~~~~~~G~~~~ 77 (78)
T PF03895_consen 42 VAVGASYRPNENVMVNAGVSYG-SGGDVGAGAGVSYS 77 (78)
T ss_dssp EEEEEEEE-TSSEEEEEEEEEE-TTS--EEEEEEEEE
T ss_pred EEEEEEEEeCCCEEEEEEEEec-CCCCEEEEEEEEeE
Confidence 3445667779999988888884 45677778887774
Done!