Query psy5108
Match_columns 345
No_of_seqs 201 out of 627
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:28:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 1.7E-66 5.7E-71 496.9 32.9 255 1-345 13-270 (295)
2 3emn_X Voltage-dependent anion 99.8 3.1E-18 1.1E-22 163.3 21.7 190 98-344 18-216 (295)
3 3bs0_A TODX; beta barrel, oute 87.8 20 0.00067 34.7 16.5 71 274-344 278-392 (439)
4 3bry_A TBUX; beta barrel, oute 87.5 21 0.00072 34.4 18.6 50 275-324 279-356 (441)
5 3prn_A Porin; integral membran 87.0 20 0.00067 33.5 16.2 72 253-325 193-272 (289)
6 3pgu_A Long-chain fatty acid t 83.0 35 0.0012 33.0 17.6 50 275-324 273-345 (427)
7 3dwo_X Probable outer membrane 79.9 47 0.0016 32.4 23.5 71 274-344 285-397 (451)
8 2por_A Porin; HET: C8E; 1.80A 79.0 16 0.00056 33.6 11.2 41 304-344 230-277 (301)
9 3vy8_X Outer membrane protein; 71.0 45 0.0015 31.6 12.2 41 303-344 271-326 (355)
10 2fgq_X OMP32, outer membrane p 68.2 75 0.0026 29.3 13.7 41 304-344 239-288 (332)
11 2wjr_A Probable N-acetylneuram 60.7 14 0.00047 32.9 5.9 53 271-323 50-104 (214)
12 3nsg_A Outer membrane protein 56.3 1.3E+02 0.0044 28.0 13.9 40 304-343 253-307 (341)
13 1pho_A Phosphoporin; outer mem 51.9 1.4E+02 0.0047 27.1 14.0 109 235-344 144-299 (330)
14 2zfg_A Outer membrane protein 48.7 1.6E+02 0.0056 27.0 13.7 42 303-344 254-309 (340)
15 4e1t_A Invasin; outer membrane 38.7 2.2E+02 0.0076 25.7 14.2 92 234-325 64-188 (245)
16 2lme_A Adhesin YADA; trimeric 36.4 96 0.0033 24.1 6.6 34 288-323 53-86 (105)
17 3pgu_A Long-chain fatty acid t 36.1 3E+02 0.01 26.4 18.7 43 275-317 325-380 (427)
18 3bs0_A TODX; beta barrel, oute 31.4 3.4E+02 0.012 25.7 16.0 42 277-318 336-390 (439)
19 2j1n_A Outer membrane protein 27.3 3.6E+02 0.012 24.6 14.9 109 235-344 142-312 (346)
20 3dwo_X Probable outer membrane 27.0 4.3E+02 0.015 25.4 18.0 41 275-315 337-390 (451)
21 2por_A Porin; HET: C8E; 1.80A 24.5 3.9E+02 0.013 24.0 15.3 23 302-324 259-281 (301)
22 3qra_A AIL, attachment invasio 22.9 3.1E+02 0.011 22.3 10.2 14 330-343 118-131 (157)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=1.7e-66 Score=496.89 Aligned_cols=255 Identities=46% Similarity=0.870 Sum_probs=247.0
Q ss_pred CC-CCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCCceEEEEEeeEeeeccccccccCcccccc
Q psy5108 1 MA-PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDS 79 (345)
Q Consensus 1 m~-p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~ 79 (345)
|+ ||+|+||||.|||||+|||+++.+||+|||+++|||+|+++|.++.+.++++|+||+||
T Consensus 13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~ky------------------ 74 (295)
T 3emn_X 13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKY------------------ 74 (295)
T ss_dssp CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEE------------------
T ss_pred cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEE------------------
Confidence 54 99999999999999999999998899999999999999999999987899999999999
Q ss_pred hhhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeecccccccee
Q psy5108 80 KDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLT 159 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt 159 (345)
++++| ||+
T Consensus 75 -----------------------------------------------------------------------k~~~~-g~t 82 (295)
T 3emn_X 75 -----------------------------------------------------------------------RWTEY-GLT 82 (295)
T ss_dssp -----------------------------------------------------------------------EETTT-TEE
T ss_pred -----------------------------------------------------------------------EecCC-cEE
Confidence 55889 999
Q ss_pred eEEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeeccee
Q psy5108 160 FSEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWL 237 (345)
Q Consensus 160 ~t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~ 237 (345)
++|+|+|+|.|.|||+++ ++||||++++++|.|+++.|++||+++|+|++++++++++++..+|+++.++|+|+++|+
T Consensus 83 ~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~ 162 (295)
T 3emn_X 83 FTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWL 162 (295)
T ss_dssp EEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEE
T ss_pred EEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEE
Confidence 999999999999999999 999999999999999988999999999999999999999987789999999999999999
Q ss_pred EeEEEEEeccCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCC
Q psy5108 238 CGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQ 317 (345)
Q Consensus 238 lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~ 317 (345)
+|+|+.||++++++++++++++|+.+||+++++++|++.+++||||||++++++|+|+.|+.+.++++++||+||+||++
T Consensus 163 ~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~ 242 (295)
T 3emn_X 163 AGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPD 242 (295)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSS
T ss_pred EEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108 318 ASVRAKVNNASQIGLGYSQKLNDALSLN 345 (345)
Q Consensus 318 ~~lKAKvnn~g~vgl~y~qkL~p~v~lt 345 (345)
+++||||||+|.++++|+|+|+|+|+|+
T Consensus 243 ~~vKakvn~~g~v~~~y~~kl~p~v~lt 270 (295)
T 3emn_X 243 ACFSAKVNNSSLIGLGYTQTLKPGIKLT 270 (295)
T ss_dssp EEEEEEEETTSEEEEEEEEEEETTEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCcEEE
Confidence 9999999999999999999999999874
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=99.80 E-value=3.1e-18 Score=163.32 Aligned_cols=190 Identities=26% Similarity=0.421 Sum_probs=150.1
Q ss_pred ceeeccccccce----eeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEEEecCCCceEEE
Q psy5108 98 FVFHTNVSSRQI----FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTE 173 (345)
Q Consensus 98 ~~~~~~~~~rD~----y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~te 173 (345)
.+.+-||++||. ||+++|+|||||+++|||+|++.|++.+++++|+|+|| .+| +|...++..++
T Consensus 18 ~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le-----~ky-------k~~~~g~t~~~ 85 (295)
T 3emn_X 18 TYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLE-----TKY-------RWTEYGLTFTE 85 (295)
T ss_dssp CGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEE-----EEE-------EETTTTEEEEE
T ss_pred cccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEE-----EEE-------EecCCcEEEEE
Confidence 345668999884 46899999999999999999999999999999999999 999 99999988887
Q ss_pred EEEEecccceEEEEEEEecCCCCcceEEEEEEeccc-eeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCcccc
Q psy5108 174 VSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSL-AAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLK 252 (345)
Q Consensus 174 i~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~-~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~t 252 (345)
+|+++ +.|.+++.-+. +.-++++.+ +..|.|.+++ .
T Consensus 86 ---------------kw~t~-----n~l~t~i~~~~~l~~Glk~~~----------------------~~~~~P~~~~-k 122 (295)
T 3emn_X 86 ---------------KWNTD-----NTLGTEITVEDQLARGLKLTF----------------------DSSFSPNTGK-K 122 (295)
T ss_dssp ---------------EEETT-----SCEEEEEEEESSSSTTEEEEE----------------------EEEEETTTTE-E
T ss_pred ---------------EEeCC-----CcEEEEEEEccccCCceEEEE----------------------EEEECCCCCC-c
Confidence 78776 56777777433 555444444 4668787765 6
Q ss_pred ceeEEeeEEcCceEEEEEec---CCCceeeeEEEEccCceeEEEEEEEeccCCC-ceEEEEEEEecCCCcEEEEEEcCCC
Q psy5108 253 ANRLSLGFVGSDFVFHTNVD---DGKLFGGTVYQKLGPKLETGVQLAWSSESND-TKFAFGCKYDLENQASVRAKVNNAS 328 (345)
Q Consensus 253 k~~~~lgY~~~d~~~s~~l~---n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~-~~~~vG~ky~ld~~~~lKAKvnn~g 328 (345)
...+.+.|.++.+.+...++ .+..+.+|..- ..++|.+|+|+.|+...+. +...+|..|.- +++.+.+++++..
T Consensus 123 s~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~-g~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~-~d~~~s~~l~~~~ 200 (295)
T 3emn_X 123 NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVL-GYEGWLAGYQMNFETSKSRVTQSNFAVGYKT-DEFQLHTNVNDGT 200 (295)
T ss_dssp EEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEE-EETTEEEEEEEEEETTTTEEEEEEEEEEEEC-SSEEEEEEEETTT
T ss_pred ceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEE-eeCCEEEEEEEEEEeCCCCeeeEEEEEEEcC-CCEEEEEEECCCC
Confidence 78999999999998855542 23455555322 2589999999999987643 34566666653 8999999999989
Q ss_pred eEEEEEEEEccCCcee
Q psy5108 329 QIGLGYSQKLNDALSL 344 (345)
Q Consensus 329 ~vgl~y~qkL~p~v~l 344 (345)
.+.++|.|+++|++++
T Consensus 201 ~~~aSy~qkvs~~~~~ 216 (295)
T 3emn_X 201 EFGGSIYQKVNKKLET 216 (295)
T ss_dssp EEEEEEEEECSSSEEE
T ss_pred eEEEEEEEECCCceEE
Confidence 9999999999998865
No 3
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=87.78 E-value=20 Score=34.72 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=51.7
Q ss_pred CCceeeeEEEEccCceeEEEEEEEecc--------------------------CCCceEEEEEEEecCCCcEEEEEEc--
Q psy5108 274 GKLFGGTVYQKLGPKLETGVQLAWSSE--------------------------SNDTKFAFGCKYDLENQASVRAKVN-- 325 (345)
Q Consensus 274 ~~~~~~S~~~kv~~~~~vGae~~~~~~--------------------------~~~~~~~vG~ky~ld~~~~lKAKvn-- 325 (345)
-..+..++.|++.++|.+.+++.|..= +....+.||..|++++..++||=++
T Consensus 278 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~yd 357 (439)
T 3bs0_A 278 PASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYA 357 (439)
T ss_dssp CCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEEEC
T ss_pred CcEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeEcc
Confidence 356899999999999999999988521 1245789999999999999998542
Q ss_pred ----------------CCCeEEEEEEEEccCCcee
Q psy5108 326 ----------------NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 326 ----------------n~g~vgl~y~qkL~p~v~l 344 (345)
+...++++...++.++++|
T Consensus 358 ~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~i 392 (439)
T 3bs0_A 358 QQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRI 392 (439)
T ss_dssp C------CCCTTSCCCCSEEEEEEEEEESSSSEEE
T ss_pred cCCCCcccccccccCccceEEEeeeEEEcCCCcEE
Confidence 1223556666666665543
No 4
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=87.53 E-value=21 Score=34.37 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=40.7
Q ss_pred CceeeeEEEEccCceeEEEEEEEecc----------------------------CCCceEEEEEEEecCCCcEEEEEE
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSSE----------------------------SNDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~~----------------------------~~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
..+..++.|++.++|.+.+.+.|..= +....+++|..|++++..++||=+
T Consensus 279 ~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~ 356 (441)
T 3bry_A 279 AQLTVGISHQFNDQLSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGGF 356 (441)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEee
Confidence 56789999999999999999988531 125688999999999999998853
No 5
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=87.02 E-value=20 Score=33.50 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=33.2
Q ss_pred ceeEEeeEEcC-ceEEEEEecCC------CceeeeEEEEccCceeEEEEEE-EeccCCCceEEEEEEEecCCCcEEEEEE
Q psy5108 253 ANRLSLGFVGS-DFVFHTNVDDG------KLFGGTVYQKLGPKLETGVQLA-WSSESNDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 253 k~~~~lgY~~~-d~~~s~~l~n~------~~~~~S~~~kv~~~~~vGae~~-~~~~~~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
.+-++++|.-. .+.+.+...+. +.+..+.-..+ ..+.+.+... .......+.++||+.|.|-..+++++-+
T Consensus 193 ~~~l~~~y~fG~~~~v~~~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy 271 (289)
T 3prn_A 193 IAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAF-GATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSV 271 (289)
T ss_dssp EEEEEEEECCSSSEEEEEEEEECTTSTTCSEEEEEEEEEE-TTEEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCeEEEEEEEccccccCCceEEEEEEeEe-cCeEEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEE
Confidence 45555566555 55555544321 22333333334 2233333222 1111234566666666666666666544
Q ss_pred c
Q psy5108 325 N 325 (345)
Q Consensus 325 n 325 (345)
.
T Consensus 272 ~ 272 (289)
T 3prn_A 272 Q 272 (289)
T ss_dssp E
T ss_pred E
Confidence 3
No 6
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=83.02 E-value=35 Score=33.05 Aligned_cols=50 Identities=18% Similarity=0.436 Sum_probs=40.4
Q ss_pred CceeeeEEEEccCceeEEEEEEEec--------------------c---CCCceEEEEEEEecCCCcEEEEEE
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSS--------------------E---SNDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~--------------------~---~~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
..+..++.|++.++|.+.+++.|.. . +....+++|..|++++..++|+=+
T Consensus 273 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~ 345 (427)
T 3pgu_A 273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGI 345 (427)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESSCSCEEEEEETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEecCCCEEEEEEEEEEEeccccceEEEcCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEE
Confidence 4567889999999999999999851 0 136788999999998889998853
No 7
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=79.89 E-value=47 Score=32.39 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=52.5
Q ss_pred CCceeeeEEEEccCceeEEEEEEEecc----------------------CCCceEEEEEEEecCCCcEEEEEEc--C---
Q psy5108 274 GKLFGGTVYQKLGPKLETGVQLAWSSE----------------------SNDTKFAFGCKYDLENQASVRAKVN--N--- 326 (345)
Q Consensus 274 ~~~~~~S~~~kv~~~~~vGae~~~~~~----------------------~~~~~~~vG~ky~ld~~~~lKAKvn--n--- 326 (345)
-..+..++.++++++|.+.+.+.|..- +....+++|..|++.+..++|+=+. +
T Consensus 285 P~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~~yd~sp~ 364 (451)
T 3dwo_X 285 PAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQTPT 364 (451)
T ss_dssp CCEEEEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEEEEECCSC
T ss_pred CcEEEEEEEEEeCCCEEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEEEEccCCC
Confidence 356788999999999999999988631 2368899999999999999998432 1
Q ss_pred -------------CCeEEEEEEEEcc--CCcee
Q psy5108 327 -------------ASQIGLGYSQKLN--DALSL 344 (345)
Q Consensus 327 -------------~g~vgl~y~qkL~--p~v~l 344 (345)
...+++....++. ++++|
T Consensus 365 ~~~~~~~~~P~~~~~~~s~G~~y~~~~~~~~~l 397 (451)
T 3dwo_X 365 HNATRDPRIPDGDRYFASLGAGYRFQSMPELSI 397 (451)
T ss_dssp CTTTCCSSSCCCCEEEEEEEEEEECSSSSSEEE
T ss_pred CcccccccccCCCCEEEEEeEEEEecCCCCeEE
Confidence 1225666666777 66554
No 8
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=79.01 E-value=16 Score=33.61 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=23.3
Q ss_pred ceEEEEE--EEecCCCcEEEEEEc-----CCCeEEEEEEEEccCCcee
Q psy5108 304 TKFAFGC--KYDLENQASVRAKVN-----NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 304 ~~~~vG~--ky~ld~~~~lKAKvn-----n~g~vgl~y~qkL~p~v~l 344 (345)
..+.+|. +|.+.+..+|++-.. +...+++.|.+.|.|++++
T Consensus 230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~l 277 (301)
T 2por_A 230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASI 277 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEE
Confidence 3456666 666654444555432 2236677777777777654
No 9
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=71.05 E-value=45 Score=31.63 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=29.5
Q ss_pred CceEEEEEEEecCCCcEEEEEE--------cC-------CCeEEEEEEEEccCCcee
Q psy5108 303 DTKFAFGCKYDLENQASVRAKV--------NN-------ASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 303 ~~~~~vG~ky~ld~~~~lKAKv--------nn-------~g~vgl~y~qkL~p~v~l 344 (345)
...++++++|.+++ ..+++-. ++ .-.+.+.+.+.|+++.++
T Consensus 271 ~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKrt~~ 326 (355)
T 3vy8_X 271 QTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSA 326 (355)
T ss_dssp EEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEE
T ss_pred eeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCCeEE
Confidence 56888999998876 6655432 21 235899999999998764
No 10
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=68.16 E-value=75 Score=29.32 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred ceEEEEEEEecCCCcEEEEEEc---------CCCeEEEEEEEEccCCcee
Q psy5108 304 TKFAFGCKYDLENQASVRAKVN---------NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 304 ~~~~vG~ky~ld~~~~lKAKvn---------n~g~vgl~y~qkL~p~v~l 344 (345)
..+.+|.+|.+.+...+++-.. +...+.+.+.+.|+++..|
T Consensus 239 ~~~~~ga~y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~l 288 (332)
T 2fgq_X 239 NSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTAL 288 (332)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEE
T ss_pred eEEEEEEEEEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHh
Confidence 4456666666655555554321 1134666666677666543
No 11
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=60.74 E-value=14 Score=32.90 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=34.8
Q ss_pred ecCCCceeeeEEEEccCceeEEEEEE--EeccCCCceEEEEEEEecCCCcEEEEE
Q psy5108 271 VDDGKLFGGTVYQKLGPKLETGVQLA--WSSESNDTKFAFGCKYDLENQASVRAK 323 (345)
Q Consensus 271 l~n~~~~~~S~~~kv~~~~~vGae~~--~~~~~~~~~~~vG~ky~ld~~~~lKAK 323 (345)
..++.++.++|..|++++|.+..-+. +.........-|-..|.+|++..+.+|
T Consensus 50 ~~ng~E~~~~Y~~k~~d~~~l~PG~~~~~~s~~~~YkPylk~~Y~fd~~~~~~~R 104 (214)
T 2wjr_A 50 ALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIR 104 (214)
T ss_dssp --CEEEEEEEECEESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEE
T ss_pred ccccEEEEEEEEEEcCCCEEEecceEEEecCCCcEEeeEEEEeEEeCCCEEEEEE
Confidence 45578899999999998865544444 555444555666666777777666664
No 12
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=56.33 E-value=1.3e+02 Score=27.99 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=21.9
Q ss_pred ceEEEEEEEecCCCcEEEEE-----EcC----------CCeEEEEEEEEccCCce
Q psy5108 304 TKFAFGCKYDLENQASVRAK-----VNN----------ASQIGLGYSQKLNDALS 343 (345)
Q Consensus 304 ~~~~vG~ky~ld~~~~lKAK-----vnn----------~g~vgl~y~qkL~p~v~ 343 (345)
..++++++|+++|...+++- .++ ...+.+.+.+.|+++..
T Consensus 253 ~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~ 307 (341)
T 3nsg_A 253 QNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMN 307 (341)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEE
T ss_pred EEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEE
Confidence 45667777776665555442 111 12356666666766654
No 13
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=51.89 E-value=1.4e+02 Score=27.09 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred ceeEeEEEEEecc-----CccccceeEEeeEEcC--ceEEEEEe-----------------cCCCceeeeEEEEccCcee
Q psy5108 235 GWLCGYSLKFDSK-----DAKLKANRLSLGFVGS--DFVFHTNV-----------------DDGKLFGGTVYQKLGPKLE 290 (345)
Q Consensus 235 g~~lG~e~~yd~~-----~~~~tk~~~~lgY~~~--d~~~s~~l-----------------~n~~~~~~S~~~kv~~~~~ 290 (345)
+|.++++..+.-. ...-..+.+++.|..+ .+.+.+.. .+.+.+.+..-..+ ..+.
T Consensus 144 G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~-g~~~ 222 (330)
T 1pho_A 144 GLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDA-NNIY 222 (330)
T ss_dssp TEEEEEEEECCBCSSCSTTCBCSEEEEEEEEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEE-TTEE
T ss_pred ceEEEEEEecCCCCCccccccCCeEEEEEEEEcCCCCEEEEEEEEEecccccccccccCCccchheEEEEEEEEe-CCEE
Q ss_pred EEEEEEEeccC---------CCceEEEEEEEecCCCcEEEEEE--------------cCCCeEEEEEEEEccCCcee
Q psy5108 291 TGVQLAWSSES---------NDTKFAFGCKYDLENQASVRAKV--------------NNASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 291 vGae~~~~~~~---------~~~~~~vG~ky~ld~~~~lKAKv--------------nn~g~vgl~y~qkL~p~v~l 344 (345)
+++...+.... ....+++|.+|.+.|...+.+-. .+...+.+.+.+.|+++..|
T Consensus 223 l~a~Y~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~l 299 (330)
T 1pho_A 223 LATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSA 299 (330)
T ss_dssp EEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEE
T ss_pred EEEEEEeeEEccCCCCCcceeeEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEEE
No 14
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=48.74 E-value=1.6e+02 Score=26.99 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=25.0
Q ss_pred CceEEEEEEEecCCCcEEEEE-----Ec---------CCCeEEEEEEEEccCCcee
Q psy5108 303 DTKFAFGCKYDLENQASVRAK-----VN---------NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 303 ~~~~~vG~ky~ld~~~~lKAK-----vn---------n~g~vgl~y~qkL~p~v~l 344 (345)
...++++++|.+.|...+.+- .+ +...+.+.+.+.|+++..|
T Consensus 254 ~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrT~l 309 (340)
T 2zfg_A 254 TQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMST 309 (340)
T ss_dssp EEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEecCCeEE
Confidence 345677777777666555531 11 1135677777777776553
No 15
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=38.71 E-value=2.2e+02 Score=25.68 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=57.7
Q ss_pred cceeEeEEEEEecc-CccccceeEEeeEEcCceEEEEEe-cCCCceee-----eEEEEccCceeEEEE------------
Q psy5108 234 NGWLCGYSLKFDSK-DAKLKANRLSLGFVGSDFVFHTNV-DDGKLFGG-----TVYQKLGPKLETGVQ------------ 294 (345)
Q Consensus 234 ~g~~lG~e~~yd~~-~~~~tk~~~~lgY~~~d~~~s~~l-~n~~~~~~-----S~~~kv~~~~~vGae------------ 294 (345)
++|++|+.+-||-. ++.-.+..+++-|-.+.+.+++.. -.....+- .+..|+-+.+++.++
T Consensus 64 ~~wm~G~N~FyD~d~t~~h~R~glG~E~~~d~l~lsaN~Y~~ls~w~~s~~~~~y~ERpa~G~Di~~~~~LP~~p~lg~~ 143 (245)
T 4e1t_A 64 NGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGK 143 (245)
T ss_dssp TTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEECSCCEECSSCTTCEEEECCEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEeEEEEecCCCCCCceeEeEEEEEeCceEEEEEEEeccCccccCccccccccccCCceeEEEEEECCCChhccce
Confidence 78889998888865 233467778888887777776641 11111211 334444444444444
Q ss_pred EEEe--------------ccCCCceEEEEEEEecCCCcEEEEEEc
Q psy5108 295 LAWS--------------SESNDTKFAFGCKYDLENQASVRAKVN 325 (345)
Q Consensus 295 ~~~~--------------~~~~~~~~~vG~ky~ld~~~~lKAKvn 325 (345)
+.|. ..++...+++|..|.+-|-.++.+--.
T Consensus 144 l~yeqy~Gd~V~lf~~~~~q~np~a~t~G~~YtPvPLltl~~~~~ 188 (245)
T 4e1t_A 144 LMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQR 188 (245)
T ss_dssp EEEEEECSSSBCTTCTTSCBSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccccccccCCCcccCCchhEEEEeEEeecccEEEecccc
Confidence 3321 123578999999999999999998643
No 16
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=36.40 E-value=96 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=20.1
Q ss_pred ceeEEEEEEEeccCCCceEEEEEEEecCCCcEEEEE
Q psy5108 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAK 323 (345)
Q Consensus 288 ~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~~lKAK 323 (345)
++.+++-+.... ++..++||+.|.++++..+|+.
T Consensus 53 k~~v~~g~G~y~--g~~AvAvG~~~~~n~~~~~~~~ 86 (105)
T 2lme_A 53 KVNFTAGVGGYR--SSQALAIGSGYRVNESVALKAG 86 (105)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEESSSBCCEEE
T ss_pred cEEEEEEEeccC--CceEEEEEEEEEeCCCEEEEEE
Confidence 355555555442 4566666666666666666665
No 17
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=36.10 E-value=3e+02 Score=26.36 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=28.4
Q ss_pred CceeeeEEEEccCceeEEEEEEEeccC-------------CCceEEEEEEEecCCC
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSSES-------------NDTKFAFGCKYDLENQ 317 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~~~-------------~~~~~~vG~ky~ld~~ 317 (345)
..++...-++++++|.+-+-+.|+... ....+++|..|++.++
T Consensus 325 ~~~~lG~eY~~~~~~~lRaG~~yd~spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~ 380 (427)
T 3pgu_A 325 YRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKD 380 (427)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEECCCCGGGCBTTBCCSCEEEEEEEEEEESSSS
T ss_pred cEEEEEEEEEcCCCEEEEEEEEEccCCCCcccccccccCCCCEEEEEeEEEEcCCC
Confidence 345566666777887777777776542 2456788888877544
No 18
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=31.39 E-value=3.4e+02 Score=25.68 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=23.3
Q ss_pred eeeeEEEEccCceeEEEEEEEeccC-------------CCceEEEEEEEecCCCc
Q psy5108 277 FGGTVYQKLGPKLETGVQLAWSSES-------------NDTKFAFGCKYDLENQA 318 (345)
Q Consensus 277 ~~~S~~~kv~~~~~vGae~~~~~~~-------------~~~~~~vG~ky~ld~~~ 318 (345)
++...-++++++|.+-+-+.|+... ....+++|..|++.+..
T Consensus 336 ~~lG~ey~~~~~~~lRaG~~yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~ 390 (439)
T 3bs0_A 336 ASIGTAYKYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDS 390 (439)
T ss_dssp EEEEEEEECSSSEEEEEEEEECC------CCCTTSCCCCSEEEEEEEEEESSSSE
T ss_pred EEEEEEEEcCCCEEEEEeeEcccCCCCcccccccccCccceEEEeeeEEEcCCCc
Confidence 4445555566666666656555431 24566777777665433
No 19
>2j1n_A Outer membrane protein C; transport protein, beta-barrel, ION transport, osmoporin; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 3nb3_D 4a8d_M 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=27.34 E-value=3.6e+02 Score=24.61 Aligned_cols=109 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred ceeEeEEEEEecc-------------------CccccceeEEeeEEcCceEEEEEe------------------cCCCce
Q psy5108 235 GWLCGYSLKFDSK-------------------DAKLKANRLSLGFVGSDFVFHTNV------------------DDGKLF 277 (345)
Q Consensus 235 g~~lG~e~~yd~~-------------------~~~~tk~~~~lgY~~~d~~~s~~l------------------~n~~~~ 277 (345)
+|.++++..+.-. ...-..+.+++.|....+.+.+.. .+.+.+
T Consensus 142 G~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Y~~g~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~ 221 (346)
T 2j1n_A 142 GLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETY 221 (346)
T ss_dssp TEEEEEEEECCBCBCSSSCCCSSBCTTCCCGGGCBCCEEEEEEEEEETTEEEEEEEEEEECCTTTSSTTSBCCCSEEEEE
T ss_pred CEEEEEEEEecCCCccccccccccccCCcccccccCceEEEEEEEEeCCEEEEEEEEEecCcccccccccccccccceEE
Q ss_pred eeeEEEEccCceeEEEEEEEeccCCC----------ceEEEEEEEecCCCcEEEEEE------------cCCC---eEEE
Q psy5108 278 GGTVYQKLGPKLETGVQLAWSSESND----------TKFAFGCKYDLENQASVRAKV------------NNAS---QIGL 332 (345)
Q Consensus 278 ~~S~~~kv~~~~~vGae~~~~~~~~~----------~~~~vG~ky~ld~~~~lKAKv------------nn~g---~vgl 332 (345)
.+..-..+. .+.+++.......... ..++++++|++.+...+.+-. .+.. .+.+
T Consensus 222 ~~g~~Y~~g-~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~a~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l 300 (346)
T 2j1n_A 222 TGGLKYDAN-NIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDV 300 (346)
T ss_dssp EEEEEEEET-TEEEEEEEEEEESCSBCTTSBBCSEEEEEEEEEEECCTTSEEEEEEEEEEEEESCSTTCCSEEEEEEEEE
T ss_pred EEEEEEeeC-CEEEEEEEeeeEeccccCccccceEEEEEEEEEEEEEecCeEEEEEEEEEeccccccccCCcceEEEEEE
Q ss_pred EEEEEccCCcee
Q psy5108 333 GYSQKLNDALSL 344 (345)
Q Consensus 333 ~y~qkL~p~v~l 344 (345)
.+.+.|+++..+
T Consensus 301 g~~Y~lSKrt~l 312 (346)
T 2j1n_A 301 GATYYFNKNMST 312 (346)
T ss_dssp EEEEESSSSEEE
T ss_pred EEEEEecCCeEE
No 20
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=26.98 E-value=4.3e+02 Score=25.38 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=28.8
Q ss_pred CceeeeEEEEccCceeEEEEEEEeccC-------------CCceEEEEEEEecC
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSSES-------------NDTKFAFGCKYDLE 315 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~~~-------------~~~~~~vG~ky~ld 315 (345)
..++...-.+++++|.+-+-+.|+... ....+++|..|++.
T Consensus 337 ~~~~lG~eY~~~~~~tlRaG~~yd~sp~~~~~~~~~~P~~~~~~~s~G~~y~~~ 390 (451)
T 3dwo_X 337 WTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQ 390 (451)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEECS
T ss_pred eEEEEEEEEEeCCCEEEEEEEEEccCCCCcccccccccCCCCEEEEEeEEEEec
Confidence 445666777788888888888887542 24568888888775
No 21
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=24.50 E-value=3.9e+02 Score=24.04 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=18.3
Q ss_pred CCceEEEEEEEecCCCcEEEEEE
Q psy5108 302 NDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 302 ~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
..+.++||+.|.|.+.+.+-+-+
T Consensus 259 ~a~~~~lg~~Y~Ls~~~~lya~y 281 (301)
T 2por_A 259 DVTYYGLGASYDLGGGASIVGGI 281 (301)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccEEEEEEEEcCCCCeEEEEEE
Confidence 35678888999888888888764
No 22
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=22.91 E-value=3.1e+02 Score=22.31 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=6.9
Q ss_pred EEEEEEEEccCCce
Q psy5108 330 IGLGYSQKLNDALS 343 (345)
Q Consensus 330 vgl~y~qkL~p~v~ 343 (345)
+|+..+..+.|++.
T Consensus 118 ~GaGvey~~~~n~~ 131 (157)
T 3qra_A 118 YGAGLQFNPHPNFV 131 (157)
T ss_dssp EEEEEEECSSTTEE
T ss_pred EEEEEEEEecCCEE
Confidence 44455555555443
Done!