Query psy5108
Match_columns 345
No_of_seqs 201 out of 627
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 17:28:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5108.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5108hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t16a_ f.4.3.4 (A:) Long-chai 79.8 18 0.0013 31.2 15.1 70 275-344 273-383 (427)
2 d2fgqx1 f.4.3.1 (X:3-332) Pori 59.0 49 0.0036 27.9 15.5 47 278-324 240-290 (330)
3 d2fgqx1 f.4.3.1 (X:3-332) Pori 30.8 1.4E+02 0.01 24.7 13.9 42 303-344 236-286 (330)
4 d3prna_ f.4.3.1 (A:) Porin {Rh 28.1 1.3E+02 0.0097 23.7 15.8 23 302-324 249-271 (289)
5 d2pora_ f.4.3.1 (A:) Porin {Rh 24.5 1.5E+02 0.011 23.1 9.0 22 303-324 260-281 (301)
6 d3prna_ f.4.3.1 (A:) Porin {Rh 17.3 2.2E+02 0.016 22.2 17.0 14 330-343 253-266 (289)
7 d1phoa_ f.4.3.1 (A:) Porin {Es 16.3 2.6E+02 0.019 22.5 16.1 72 252-323 208-302 (330)
8 d2zfga1 f.4.3.1 (A:1-340) Pori 15.5 2.7E+02 0.02 22.4 9.4 18 305-322 294-311 (340)
9 d1p4ta_ f.4.1.1 (A:) Outer mem 10.1 2.9E+02 0.021 19.7 9.7 19 279-297 112-130 (155)
10 d1t16a_ f.4.3.4 (A:) Long-chai 7.4 5.4E+02 0.039 20.8 20.5 14 233-246 284-297 (427)
No 1
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=79.82 E-value=18 Score=31.25 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=46.3
Q ss_pred CceeeeEEEEccCceeEEEEEEEecc-----------------------CCCceEEEEEEEecCCCcEEEEEEc------
Q psy5108 275 KLFGGTVYQKLGPKLETGVQLAWSSE-----------------------SNDTKFAFGCKYDLENQASVRAKVN------ 325 (345)
Q Consensus 275 ~~~~~S~~~kv~~~~~vGae~~~~~~-----------------------~~~~~~~vG~ky~ld~~~~lKAKvn------ 325 (345)
..+..++-+++.++|.+.+++.|..- .....+.+|.+|++.+...+|+-+.
T Consensus 273 ~~~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~~~ 352 (427)
T d1t16a_ 273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPV 352 (427)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECCSS
T ss_pred cEEEEEEEEEeccceeEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccCCC
Confidence 45667777777788888888877421 1357788888888888888888644
Q ss_pred ------------CCCeEEEEEEEEccCCcee
Q psy5108 326 ------------NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 326 ------------n~g~vgl~y~qkL~p~v~l 344 (345)
+.-.++++...++.+++.+
T Consensus 353 ~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~i 383 (427)
T d1t16a_ 353 PAQNRSISIPDQDRFWLSAGTTYAFNKDASV 383 (427)
T ss_dssp CTTTCCSSSCCCCEEEEEEEEEEESSSSEEE
T ss_pred CcccccccccCCCCEEEEEEEEEEcCCCeEE
Confidence 1223566666666665543
No 2
>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]}
Probab=59.02 E-value=49 Score=27.87 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=28.6
Q ss_pred eeeEEEEccCceeEEEEEEEeccC----CCceEEEEEEEecCCCcEEEEEE
Q psy5108 278 GGTVYQKLGPKLETGVQLAWSSES----NDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 278 ~~S~~~kv~~~~~vGae~~~~~~~----~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
..+.-..+.+.+.+.+...+.-.. ....+.+|+.|.|.+.+.+=+.+
T Consensus 240 ~~~a~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~lSKrT~lYa~~ 290 (330)
T d2fgqx1 240 MLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNL 290 (330)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEE
T ss_pred EEEEEEEecccEEEEEEEEEEecccCCCCceEEEEEEEEEccCchHHhhhh
Confidence 344444555555554444443221 35668999999999888876553
No 3
>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]}
Probab=30.76 E-value=1.4e+02 Score=24.74 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=28.2
Q ss_pred CceEEEEEEEecCCCcEEEEEEc---------CCCeEEEEEEEEccCCcee
Q psy5108 303 DTKFAFGCKYDLENQASVRAKVN---------NASQIGLGYSQKLNDALSL 344 (345)
Q Consensus 303 ~~~~~vG~ky~ld~~~~lKAKvn---------n~g~vgl~y~qkL~p~v~l 344 (345)
...+.+++.|.+.+...+++... +.-.+.+.+++.|+++..|
T Consensus 236 ~~~~~~~a~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~lSKrT~l 286 (330)
T d2fgqx1 236 TNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTAL 286 (330)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEE
T ss_pred EeEEEEEEEEEecccEEEEEEEEEEecccCCCCceEEEEEEEEEccCchHH
Confidence 34567777777776666665432 1234899999999998764
No 4
>d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}
Probab=28.10 E-value=1.3e+02 Score=23.70 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=14.2
Q ss_pred CCceEEEEEEEecCCCcEEEEEE
Q psy5108 302 NDTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 302 ~~~~~~vG~ky~ld~~~~lKAKv 324 (345)
..+.++||++|.|.+.+.|.|-+
T Consensus 249 ~~~~~~lg~~Y~ls~~~~l~a~~ 271 (289)
T d3prna_ 249 ADTAYGIGADYQFAEGVKVSGSV 271 (289)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEE
T ss_pred cccEEEEEEEEEcCCCeEEEEEE
Confidence 35566666666666666666643
No 5
>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
Probab=24.46 E-value=1.5e+02 Score=23.10 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=13.4
Q ss_pred CceEEEEEEEecCCCcEEEEEE
Q psy5108 303 DTKFAFGCKYDLENQASVRAKV 324 (345)
Q Consensus 303 ~~~~~vG~ky~ld~~~~lKAKv 324 (345)
...++||+.|.|.+.+++-+-+
T Consensus 260 ~~~~~lG~~Y~Lsk~t~ly~~y 281 (301)
T d2pora_ 260 VTYYGLGASYDLGGGASIVGGI 281 (301)
T ss_dssp EEEEEEEEEEEEETTEEEEEEE
T ss_pred eeEEEEEEEEECCCCEEEEEEE
Confidence 3556666666666666666644
No 6
>d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}
Probab=17.27 E-value=2.2e+02 Score=22.20 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=6.4
Q ss_pred EEEEEEEEccCCce
Q psy5108 330 IGLGYSQKLNDALS 343 (345)
Q Consensus 330 vgl~y~qkL~p~v~ 343 (345)
+++.+++.|.|+++
T Consensus 253 ~~lg~~Y~ls~~~~ 266 (289)
T d3prna_ 253 YGIGADYQFAEGVK 266 (289)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EEEEEEEEcCCCeE
Confidence 44444444444443
No 7
>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences [TaxId: 562]}
Probab=16.34 E-value=2.6e+02 Score=22.51 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=40.0
Q ss_pred cceeEEeeEEcCceEEEEEecC--------------CCceeeeEEEEccCceeEEEEEEEeccC---------CCceEEE
Q psy5108 252 KANRLSLGFVGSDFVFHTNVDD--------------GKLFGGTVYQKLGPKLETGVQLAWSSES---------NDTKFAF 308 (345)
Q Consensus 252 tk~~~~lgY~~~d~~~s~~l~n--------------~~~~~~S~~~kv~~~~~vGae~~~~~~~---------~~~~~~v 308 (345)
..+.+++.|....+.+.+.... .+.+....-.++.+.+.+.+-..+.... ....++|
T Consensus 208 ~~~~~~a~Y~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 287 (330)
T d1phoa_ 208 EAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDV 287 (330)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEE
T ss_pred eeEEEEEEEEcceEEEEeEEEEeeecCCccccceeeeeeEEEEEEEeeccceeeEEEEEEEeccccccCCCCcceEEEEE
Confidence 4566677777766665543221 0112333333455555544443333211 1257889
Q ss_pred EEEEecCCCcEEEEE
Q psy5108 309 GCKYDLENQASVRAK 323 (345)
Q Consensus 309 G~ky~ld~~~~lKAK 323 (345)
|+.|.|.+.+.+-+-
T Consensus 288 G~~Y~lsk~~~~yae 302 (330)
T d1phoa_ 288 GATYYFNKNMSAFVD 302 (330)
T ss_dssp EEEEESSSSEEEEEE
T ss_pred EEEEEeCCCEEEEEE
Confidence 999999888888874
No 8
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different sequences [TaxId: 562]}
Probab=15.52 E-value=2.7e+02 Score=22.37 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=9.0
Q ss_pred eEEEEEEEecCCCcEEEE
Q psy5108 305 KFAFGCKYDLENQASVRA 322 (345)
Q Consensus 305 ~~~vG~ky~ld~~~~lKA 322 (345)
.+.||+.|.|.+.+.+-+
T Consensus 294 ~~~vG~~Y~lsk~~~~y~ 311 (340)
T d2zfga1 294 YFEVGATYYFNKNMSTYV 311 (340)
T ss_dssp EEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEEecCCEEEEE
Confidence 355555555554444443
No 9
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=10.06 E-value=2.9e+02 Score=19.70 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=8.4
Q ss_pred eeEEEEccCceeEEEEEEE
Q psy5108 279 GTVYQKLGPKLETGVQLAW 297 (345)
Q Consensus 279 ~S~~~kv~~~~~vGae~~~ 297 (345)
+.+-..++++|.+-+|..|
T Consensus 112 ~G~~y~lt~n~~~~~eyry 130 (155)
T d1p4ta_ 112 TGVSYAVTPNVDLDAGYRY 130 (155)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCEEEEEEEEE
Confidence 3334444444444444444
No 10
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=7.38 E-value=5.4e+02 Score=20.75 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.3
Q ss_pred ecceeEeEEEEEec
Q psy5108 233 YNGWLCGYSLKFDS 246 (345)
Q Consensus 233 ~~g~~lG~e~~yd~ 246 (345)
.+.|.++++..|..
T Consensus 284 ~~~~~l~~d~~~~~ 297 (427)
T d1t16a_ 284 DPQWAIHYSLAYTS 297 (427)
T ss_dssp ETTEEEEEEEEEEC
T ss_pred ccceeEEEeeeecc
Confidence 47788888887753
Done!