Query psy5109
Match_columns 145
No_of_seqs 106 out of 321
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:29:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3126|consensus 100.0 3.7E-42 8E-47 279.7 14.2 143 1-145 2-146 (281)
2 cd07306 Porin3_VDAC Voltage-de 100.0 8.2E-38 1.8E-42 253.7 18.5 139 3-145 1-141 (276)
3 cd07303 Porin3 Eukaryotic pori 99.9 1.2E-24 2.5E-29 177.0 15.9 135 5-145 1-141 (274)
4 PF01459 Porin_3: Eukaryotic p 99.9 1.7E-21 3.7E-26 155.4 20.0 137 2-144 1-140 (273)
5 cd07305 Porin3_Tom40 Transloca 98.7 3E-07 6.5E-12 74.9 12.5 132 3-143 4-138 (279)
6 cd07305 Porin3_Tom40 Transloca 92.5 4.8 0.00011 32.6 13.2 78 33-115 198-275 (279)
7 cd07303 Porin3 Eukaryotic pori 92.1 5.7 0.00012 32.3 14.1 79 33-115 192-270 (274)
8 TIGR00989 3a0801s07tom40 mitoc 90.2 6.9 0.00015 29.9 13.0 125 3-136 4-131 (161)
9 cd07306 Porin3_VDAC Voltage-de 88.1 13 0.00027 30.1 14.4 51 51-103 209-259 (276)
10 PF01459 Porin_3: Eukaryotic p 87.1 13 0.00028 29.2 14.7 101 26-127 78-183 (273)
11 COG4762 Uncharacterized protei 34.0 37 0.00081 25.9 2.4 30 3-32 10-39 (168)
12 KOG1693|consensus 26.4 1.2E+02 0.0025 24.2 4.0 60 4-63 23-96 (209)
13 smart00604 MD MD domain. 23.6 1.1E+02 0.0024 23.0 3.3 25 23-47 6-30 (145)
No 1
>KOG3126|consensus
Probab=100.00 E-value=3.7e-42 Score=279.72 Aligned_cols=143 Identities=50% Similarity=0.848 Sum_probs=137.7
Q ss_pred CCCCCCCCccccccccccCCCCCcceEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCCc
Q psy5109 1 MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 80 (145)
Q Consensus 1 M~pp~f~DiGK~ArDlL~kgy~~g~~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~ 80 (145)
|+||+|+||||.|||||+|||++|+|+++|+|++++||+|+++|.++++.+++.|++|+||+++++ |++++|+|+|+|.
T Consensus 2 ~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~-glt~t~kw~Tdn~ 80 (281)
T KOG3126|consen 2 MAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDY-GLTLTEKWNTDNT 80 (281)
T ss_pred CCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccC-ceEEEEEeecCCc
Confidence 459999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEEEE--ecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCCeEEEEEEeeeC
Q psy5109 81 LTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYN 145 (145)
Q Consensus 81 l~t~i~~~--l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p~v~~s~v~g~~ 145 (145)
|.++|+++ ++||||++++++|.|+.+.+++|++++|.|++++++++ ++.+++|.+.+|+|+|+|
T Consensus 81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~-~~~~~~P~i~~s~v~g~~ 146 (281)
T KOG3126|consen 81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGAD-DFLTANPLILGSLVLGHE 146 (281)
T ss_pred cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeec-cccccCCeEEEEEEeccc
Confidence 99999997 99999999999999988999999999999999999996 555689999999999986
No 2
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=8.2e-38 Score=253.69 Aligned_cols=139 Identities=47% Similarity=0.843 Sum_probs=132.9
Q ss_pred CCCCCCccccccccccCCCCCcceEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCCcEE
Q psy5109 3 PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLT 82 (145)
Q Consensus 3 pp~f~DiGK~ArDlL~kgy~~g~~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~ 82 (145)
||+|+||||.|||||+|||++|.|+|+|+|++++||+|+++|+++++.+++.|++|+||+++ |++++|+|+|+|+|.
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~---~~t~~~k~~t~n~l~ 77 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIK---GLTLTQKWNTDNVLL 77 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeC---CEEEEEEEeCCCcee
Confidence 89999999999999999999999999999999999999999999998899999999999875 679999999999999
Q ss_pred EEEEEE--ecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCCeEEEEEEeeeC
Q psy5109 83 TEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYN 145 (145)
Q Consensus 83 t~i~~~--l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p~v~~s~v~g~~ 145 (145)
++|+++ ++||||++++++|.|+.+.+++||+++|+|+++++++++++. ..|.+++|+|+|++
T Consensus 78 t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~-~~p~~~~s~~~g~~ 141 (276)
T cd07306 78 TEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLN-KGPLVGASAVLGYK 141 (276)
T ss_pred EEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEeccc-CCCeeEEEEEeccc
Confidence 999999 669999999999999988899999999999999999999996 49999999999874
No 3
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=99.93 E-value=1.2e-24 Score=177.04 Aligned_cols=135 Identities=45% Similarity=0.767 Sum_probs=123.5
Q ss_pred CCCCccccccccccCCCCCcceEEEEEeccCCCeEEEEeEeeecC----CCceeEeeEEEEEeccccCcEEEEEEcCCCc
Q psy5109 5 LYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLE----SGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 80 (145)
Q Consensus 5 ~f~DiGK~ArDlL~kgy~~g~~kl~~kT~t~~gv~fts~g~~~~~----~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~ 80 (145)
+|.||||.|||||++||.+| ++|+|+|.+++ +|++++....+ ...+.+++|++|+++++ |++++++|+++|.
T Consensus 1 ~~~digk~ardll~~~~~~g-~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~t~~~~~~~dn~ 76 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGG-IKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPY-GLTFTEKWNTDNT 76 (274)
T ss_pred ChhHhhhhhHHhcccCCCCC-EEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCC-CeEEEEEEEcCCc
Confidence 58999999999999999999 69999999998 68888888753 57999999999999999 9999999999999
Q ss_pred EEEEEEEE--ecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCCeEEEEEEeeeC
Q psy5109 81 LTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYN 145 (145)
Q Consensus 81 l~t~i~~~--l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p~v~~s~v~g~~ 145 (145)
+.++++++ +.||+|+.+.+++.|.++.++++++.+|++++++++..+++ .+|+|..++++|++
T Consensus 77 ~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~--~gp~v~~~~~~g~~ 141 (274)
T cd07303 77 LGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDI--AGPLIRGALVLGYE 141 (274)
T ss_pred ceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeec--CCCEEEEEEEEeec
Confidence 99999999 89999999999998887888999999999998888777664 79999999999874
No 4
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=99.89 E-value=1.7e-21 Score=155.43 Aligned_cols=137 Identities=31% Similarity=0.463 Sum_probs=122.0
Q ss_pred CCCCCCCccccccccccCCCCCcceEEEEEeccCCCeEEEEeEeeecCCC-ceeEeeEEEEEeccccCcEEEEEEcCCCc
Q psy5109 2 APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGLTFSEKWNTDNV 80 (145)
Q Consensus 2 ~pp~f~DiGK~ArDlL~kgy~~g~~kl~~kT~t~~gv~fts~g~~~~~~~-~v~G~le~ky~~~~~~Glt~~~kw~t~n~ 80 (145)
+||.|.||+|.|||||.+||+|+.++|+|++++++++.|++++....... .+.+.++++|. |.+++++|++++.
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~ 75 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK-----GPKLTVKGDTDND 75 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE-----CEEEEEEEETTTE
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe-----CceeeEEEEeCCc
Confidence 49999999999999999999999899999999999999999999998777 99999999998 4488999999999
Q ss_pred EEEEEEEE--ecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCCeEEEEEEeee
Q psy5109 81 LTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGY 144 (145)
Q Consensus 81 l~t~i~~~--l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p~v~~s~v~g~ 144 (145)
..++++++ +.+||++.+.+.+.|.+..+..+++++|+++.+++++.+++ ...|.+.+|.+.+.
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~-~~~~~~~~s~~~~v 140 (273)
T PF01459_consen 76 GNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDN-DNNPIFNASYVQSV 140 (273)
T ss_dssp EEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEE-STS-EEEEEEEEEE
T ss_pred ccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcc-cCCCcEEEEEEEec
Confidence 99999999 89999999999988886678999999999999999999998 46999999998864
No 5
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=98.72 E-value=3e-07 Score=74.93 Aligned_cols=132 Identities=12% Similarity=0.193 Sum_probs=103.4
Q ss_pred CCCCCCccccccccccCCCCCcceEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEecc--ccCcEEEEEEcCCCc
Q psy5109 3 PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKN--YAGLTFSEKWNTDNV 80 (145)
Q Consensus 3 pp~f~DiGK~ArDlL~kgy~~g~~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~--~~Glt~~~kw~t~n~ 80 (145)
|+.|.||.|.|||++..+|.-|. ++++.....+.+.++-+-..........-.+.+.|...+ . .+..++++++.
T Consensus 4 Pg~~e~l~~e~k~~~~~~~~~G~-r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~---~~~~~id~~g~ 79 (279)
T cd07305 4 PGTFEELHREVKEVFPLDFFDGF-RLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYP---FLQGDIDNDGN 79 (279)
T ss_pred CccHHHHHHHHHHhcCccccccE-EEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcE---EEEEEeCCCCc
Confidence 89999999999999999998675 999999999999998887777532155678888998877 5 88889999999
Q ss_pred EEEEEEEEecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCC-eEEEEEEee
Q psy5109 81 LTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNP-VISAAGVLG 143 (145)
Q Consensus 81 l~t~i~~~l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p-~v~~s~v~g 143 (145)
|.+.+..++.+.++..+.+. .|+.......++++|..+.+++... +.+| .++.+++++
T Consensus 80 l~~~~~~~~~~~~~~k~~~~-~~~~~~~~~q~~~dy~g~d~t~~l~----~~n~~~~~~sg~~~ 138 (279)
T cd07305 80 LNARIIHQLGDRLRSKLQAQ-LQDSKFNMSQLELDYRGDDFTASLK----LANPDILNETGIYV 138 (279)
T ss_pred eeEEEEeccCcceEEEEEEE-ecCCCceeEEEEEEEcCCceEEEEE----EeCCCcccccEEEE
Confidence 99999977888888888777 4454445778888888877765543 3455 345555543
No 6
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=92.54 E-value=4.8 Score=32.63 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=47.1
Q ss_pred ccCCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEEecCCceEEEEEEEecCCCCcceEE
Q psy5109 33 KTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKL 112 (145)
Q Consensus 33 ~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~l~~Glk~~l~~~~~P~~~~ks~kl 112 (145)
+..+.+++-+.-..+.........+..+|..++. .+.-+.++++.+...++-++.+++.+++++.+.+. ++..|+
T Consensus 198 kvs~~l~lG~el~~~~~~~es~~tvg~~y~~~~~---~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kf 272 (279)
T cd07305 198 KLSDKLQLGVELELNLRTRESTATLGYQYDFRQS---RFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKF 272 (279)
T ss_pred EcccceEeeeeeeecccCCceeEEEEEEEEcCCC---EEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceE
Confidence 3334444444444444445566667777776655 67777777777777777667777777777765433 234454
Q ss_pred EeE
Q psy5109 113 SGE 115 (145)
Q Consensus 113 ~~~ 115 (145)
.++
T Consensus 273 G~g 275 (279)
T cd07305 273 GFG 275 (279)
T ss_pred EEE
Confidence 443
No 7
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=92.06 E-value=5.7 Score=32.31 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=49.4
Q ss_pred ccCCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEEecCCceEEEEEEEecCCCCcceEE
Q psy5109 33 KTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKL 112 (145)
Q Consensus 33 ~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~l~~Glk~~l~~~~~P~~~~ks~kl 112 (145)
+-.+.+++-+....+...+...-.|..+|+..+ +..+.-+.++++.+..-++.+|-|++.+++++.+.|. ...-|+
T Consensus 192 kvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~--~~~vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~Kf 267 (274)
T cd07303 192 KVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDP--DACFSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKL 267 (274)
T ss_pred EcCCceEEEEEEEeeccCCccEEEEEEEEecCC--CCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeE
Confidence 334444444444444333455667777777655 2377778888888888887668888888888876544 234455
Q ss_pred EeE
Q psy5109 113 SGE 115 (145)
Q Consensus 113 ~~~ 115 (145)
.++
T Consensus 268 G~g 270 (274)
T cd07303 268 GLG 270 (274)
T ss_pred EEE
Confidence 444
No 8
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=90.21 E-value=6.9 Score=29.92 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=77.3
Q ss_pred CCCCCCccccc-cccccCCCCCcceEEEEEecc--CCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCC
Q psy5109 3 PPLYGDLGKHA-RDLFSKGYNIDVIKIDLKTKT--DSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDN 79 (145)
Q Consensus 3 pp~f~DiGK~A-rDlL~kgy~~g~~kl~~kT~t--~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n 79 (145)
|.+|-+|-|.| ||++-+-|.|...++|+.-.- ++-+.++=+-.... .....=...+.|...+. .+--..+++.
T Consensus 4 PGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs-~~~p~Y~FgA~y~~~~~---~l~G~id~dG 79 (161)
T TIGR00989 4 PGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGS-QRLPPYAFSALFGTNQL---FAQGNLDNDG 79 (161)
T ss_pred CccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCC-CCCCCceeeeEecCCcE---EEEEEeCCCC
Confidence 88999999999 999999999987899987652 44343333222221 11111122233432222 3455889999
Q ss_pred cEEEEEEEEecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCCeE
Q psy5109 80 VLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVI 136 (145)
Q Consensus 80 ~l~t~i~~~l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p~v 136 (145)
.|.+.+..++.+.+..-+.+...+. ......++.+|.-+.+.+... +.+|.+
T Consensus 80 ~l~ar~~~~~~~~~~~K~~~Q~~~~-~~~~~Q~e~DY~G~Dft~~lk----~~Np~~ 131 (161)
T TIGR00989 80 AVSTRLNYRWGDRTISKVQFQISGG-QPDMCQFEHDHLGDDFSASLK----AINPSF 131 (161)
T ss_pred CEEEEEEEeeCcceeEEEEEEecCC-CCceEEEEEEecCCeEEEEEE----EcCccc
Confidence 9999988777777744444432322 124667888888888866644 356654
No 9
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=88.06 E-value=13 Score=30.12 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred CceeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEEecCCceEEEEEEEec
Q psy5109 51 GKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAP 103 (145)
Q Consensus 51 ~~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~l~~Glk~~l~~~~~P 103 (145)
+...-.+.++|+..+ +-.+.-+.+++..+...++.++.|++.+++++.+.+
T Consensus 209 ~~~~~~vg~~y~l~~--~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~ 259 (276)
T cd07306 209 NETTFAVGGQYALDP--DALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDA 259 (276)
T ss_pred CCcEEEEEEEEEcCC--CCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeec
Confidence 344555555665543 125566666666666666655666666666665543
No 10
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=87.06 E-value=13 Score=29.20 Aligned_cols=101 Identities=15% Similarity=0.281 Sum_probs=59.5
Q ss_pred eEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEEecCCceEEEEEEEecCC
Q psy5109 26 IKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQT 105 (145)
Q Consensus 26 ~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~l~~Glk~~l~~~~~P~~ 105 (145)
..+++.-....|+.++......++.+...+.++..|+.+.+ .+++...++....+.......+.|++-+-.+..|....
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~-~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~ 156 (273)
T PF01459_consen 78 LEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDF-NATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSS 156 (273)
T ss_dssp EEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTE-EEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTT
T ss_pred EEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCE-EEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEeccc
Confidence 34555554467788888777666555689999999998888 44444444224444444444477888888888876653
Q ss_pred CCcc-eEEEeEEecc----CeEEEEEE
Q psy5109 106 GDKT-VKLSGEYKNS----LAAVNLES 127 (145)
Q Consensus 106 ~~ks-~kl~~~y~~~----~~~~~~~~ 127 (145)
..-. -.+.+.|... .+.+.+.+
T Consensus 157 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 183 (273)
T PF01459_consen 157 GKSSKYNAGLSYAARYTHPDYTASATL 183 (273)
T ss_dssp TCEEEEEEEEEEEET----TEEEEEEE
T ss_pred CCcCcceEEEEEeccccceeEEEEEEE
Confidence 2222 1223444444 66665554
No 11
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.96 E-value=37 Score=25.91 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.0
Q ss_pred CCCCCCccccccccccCCCCCcceEEEEEe
Q psy5109 3 PPLYGDLGKHARDLFSKGYNIDVIKIDLKT 32 (145)
Q Consensus 3 pp~f~DiGK~ArDlL~kgy~~g~~kl~~kT 32 (145)
|+.|.|+|-.+..=+-++|+++..++.+-+
T Consensus 10 ~~~~~e~g~s~~gr~p~g~~~~~~~l~lG~ 39 (168)
T COG4762 10 PLTYPEVGASATGRLPAGYNHLDVSLQLGT 39 (168)
T ss_pred CCCcccccccccCcCCccccceeEEEEecc
Confidence 889999999999999999988866776654
No 12
>KOG1693|consensus
Probab=26.38 E-value=1.2e+02 Score=24.22 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=42.4
Q ss_pred CCCCCccccccccccCCCCC--------------cceEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEe
Q psy5109 4 PLYGDLGKHARDLFSKGYNI--------------DVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKA 63 (145)
Q Consensus 4 p~f~DiGK~ArDlL~kgy~~--------------g~~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~ 63 (145)
|.=++|-+.||+||+-|-.. |+.-+|+.-++|+|=.+...-.+..++=.+.+...+.|++
T Consensus 23 elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~f 96 (209)
T KOG1693|consen 23 ELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTF 96 (209)
T ss_pred cEEEEcCCcchhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEE
Confidence 55678999999999877221 3556677777888877777766666555566666677765
No 13
>smart00604 MD MD domain.
Probab=23.58 E-value=1.1e+02 Score=22.96 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=21.0
Q ss_pred CcceEEEEEeccCCCeEEEEeEeee
Q psy5109 23 IDVIKIDLKTKTDSGVEFNSGGTAQ 47 (145)
Q Consensus 23 ~g~~kl~~kT~t~~gv~fts~g~~~ 47 (145)
-|.|+|.+++...++..+++....+
T Consensus 6 ~G~w~l~v~s~~s~~C~l~vR~qS~ 30 (145)
T smart00604 6 PGTWTITVRANGSNSCTISVRSQSS 30 (145)
T ss_pred CceEEEEEecCCCCCEEEEEEeccc
Confidence 3789999999988888888887655
Done!