Query psy5109
Match_columns 145
No_of_seqs 106 out of 321
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 3.3E-46 1.1E-50 305.3 19.1 144 1-145 13-159 (295)
2 3emn_X Voltage-dependent anion 90.8 5.2 0.00018 31.9 13.8 63 52-116 228-291 (295)
3 3fyf_A Protein BVU-3222; struc 21.8 2.5E+02 0.0084 20.8 7.0 40 89-128 126-165 (176)
4 2ys4_A Hydrocephalus-inducing 19.8 2E+02 0.0067 18.9 6.6 60 60-119 46-107 (122)
5 3m7o_A Lymphocyte antigen 86; 13.3 3.9E+02 0.013 19.3 6.1 32 89-120 60-91 (162)
6 2l0d_A Cell surface protein; s 12.0 3.5E+02 0.012 18.1 6.7 34 71-104 38-72 (114)
7 2a50_A ASFP595, GFP-like non-f 9.7 2E+02 0.0068 18.2 2.4 32 27-61 23-54 (73)
8 2r2c_A 28 kDa outer membrane p 6.7 5.9E+02 0.02 18.1 4.2 69 53-123 41-118 (183)
9 3sg6_A Gcamp2, myosin light ch 6.7 2.9E+02 0.0099 23.0 2.8 38 25-65 172-209 (450)
10 1d2s_A SHBG, sex hormone-bindi 6.6 5.4E+02 0.019 17.6 3.9 46 26-72 30-78 (170)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=3.3e-46 Score=305.32 Aligned_cols=144 Identities=49% Similarity=0.859 Sum_probs=139.9
Q ss_pred CC-CCCCCCccccccccccCCCCCcceEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCC
Q psy5109 1 MA-PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDN 79 (145)
Q Consensus 1 M~-pp~f~DiGK~ArDlL~kgy~~g~~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n 79 (145)
|+ ||+|+||||+|||||+|||++|.|||+|||+++|||+|+++|.++++.++++|+||+||+++++ |++++|+|+|+|
T Consensus 13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~-g~t~~~kw~t~n 91 (295)
T 3emn_X 13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEY-GLTFTEKWNTDN 91 (295)
T ss_dssp CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTT-TEEEEEEEETTS
T ss_pred cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCC-cEEEEEEEeCCC
Confidence 66 9999999999999999999999999999999999999999999999889999999999999999 999999999999
Q ss_pred cEEEEEEEE--ecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEeeecCCCeEEEEEEeeeC
Q psy5109 80 VLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYN 145 (145)
Q Consensus 80 ~l~t~i~~~--l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~~~~~~p~v~~s~v~g~~ 145 (145)
.|.++|+++ ++||||++++++|.|+++.|++||+++|+|++++++++++++..+|+|++|+|+|++
T Consensus 92 ~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~ 159 (295)
T 3emn_X 92 TLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYE 159 (295)
T ss_dssp CEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEET
T ss_pred cEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeC
Confidence 999999999 999999999999999988899999999999999999999997789999999999974
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=90.84 E-value=5.2 Score=31.88 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=38.8
Q ss_pred ceeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEEecCCceEEEEEEEecCC-CCcceEEEeEE
Q psy5109 52 KIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQT-GDKTVKLSGEY 116 (145)
Q Consensus 52 ~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~l~~Glk~~l~~~~~P~~-~~ks~kl~~~y 116 (145)
...-.+.+||...+ ..++.-+.++++.+..-++.++.|++++++++.+.... ..+.-|+.+++
T Consensus 228 ~~~~tvG~ky~ld~--~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l 291 (295)
T 3emn_X 228 NTRFGIAAKYQVDP--DACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGL 291 (295)
T ss_dssp EEEEEEEEEECCSS--SEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEE
T ss_pred CcEEEEEEEEEcCC--CCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEE
Confidence 34445555666532 23667788888887777777777888888877764432 12345655544
No 3
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=21.79 E-value=2.5e+02 Score=20.75 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=27.0
Q ss_pred ecCCceEEEEEEEecCCCCcceEEEeEEeccCeEEEEEEe
Q psy5109 89 IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESE 128 (145)
Q Consensus 89 l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~~~~~~~~~ 128 (145)
-..|....+..+..|.++.-+..+.-.|-+..+.+.+.+.
T Consensus 126 ~g~~dsa~v~i~l~~g~n~asv~V~pnfN~n~itf~G~L~ 165 (176)
T 3fyf_A 126 NGIAVSATVSIVLTGGTNQASVTINPNFSGNTLTMNGYLV 165 (176)
T ss_dssp ECSSCEEEEEEEECTTSSEEEEEEEETTCCCCEEEEEEEE
T ss_pred cccceEEEEEEEEeCCCCeEEEEEccccCCCceEEEEEEE
Confidence 3566677777775554555577777777778888777754
No 4
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=19.77 E-value=2e+02 Score=18.86 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=36.7
Q ss_pred EEEeccccCcEEEEEEcCCCcEEEEEEEE-ecCCceEEEEEEEecCCCCc-ceEEEeEEecc
Q psy5109 60 KYKAKNYAGLTFSEKWNTDNVLTTEVSSN-IIDGARLAANTSFAPQTGDK-TVKLSGEYKNS 119 (145)
Q Consensus 60 ky~~~~~~Glt~~~kw~t~n~l~t~i~~~-l~~Glk~~l~~~~~P~~~~k-s~kl~~~y~~~ 119 (145)
.+...|.+.+...-+|...+.+.-+-..- |.||-...+..+|.|..... .+.+.+.|...
T Consensus 46 ~~~l~N~g~~~~~f~~~~~~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 46 ILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGESMQLEVEFEPQSVGDHSGRLIVCYDTG 107 (122)
T ss_dssp EEEEECCSSSCEEEEEECCTTEEEESSEEEECTTCEEEEEEEECCSSSBCCCCBCEEEESSS
T ss_pred EEEEEECCCCCEEEEEecCCCeEEECCcCEECCCCEEEEEEEEEcCCCccEEEEEEEEECCC
Confidence 33444442234444666666544333322 88999999999999985333 66777777443
No 5
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*
Probab=13.32 E-value=3.9e+02 Score=19.31 Aligned_cols=32 Identities=6% Similarity=-0.154 Sum_probs=22.0
Q ss_pred ecCCceEEEEEEEecCCCCcceEEEeEEeccC
Q psy5109 89 IIDGARLAANTSFAPQTGDKTVKLSGEYKNSL 120 (145)
Q Consensus 89 l~~Glk~~l~~~~~P~~~~ks~kl~~~y~~~~ 120 (145)
..+|-++.+++.+.|+..-+.+.+++...-..
T Consensus 60 ~~~G~nl~i~a~~Ilr~dI~~ly~~l~v~~~~ 91 (162)
T 3m7o_A 60 KQIQSNLNIRFGIILRQDIRKLFLDITLMAKG 91 (162)
T ss_dssp SEECSSCEEEEEEECSSCCSEEEEEEEEEETT
T ss_pred CCCCCcEEEEEEEEEcccceeeEEEEEEEECC
Confidence 56888899999999986655555554544433
No 6
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=12.01 E-value=3.5e+02 Score=18.07 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=24.9
Q ss_pred EEEEEcCCCcEEEEEEEE-ecCCceEEEEEEEecC
Q psy5109 71 FSEKWNTDNVLTTEVSSN-IIDGARLAANTSFAPQ 104 (145)
Q Consensus 71 ~~~kw~t~n~l~t~i~~~-l~~Glk~~l~~~~~P~ 104 (145)
++.+|.-++.......+. |+.|-..++.++|.|.
T Consensus 38 ~~V~ly~~g~~v~t~~v~~LaaG~s~tv~~~w~~~ 72 (114)
T 2l0d_A 38 FNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLD 72 (114)
T ss_dssp EEEEEEETTEEEEEEEESCBCBTCEEEEEEEEECC
T ss_pred EEEEEEECCEEEcceecccccCCCEEEEEEEEeec
Confidence 444555455666666777 9999998899998887
No 7
>2a50_A ASFP595, GFP-like non-fluorescent chromoprotein FP595 CHAI; ASCP, fluorescent protein, photochromic prote reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a52_A* 2a53_A* 2a54_A* 2a56_A* 3cfa_L* 3cff_L* 3cfh_L*
Probab=9.74 E-value=2e+02 Score=18.20 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=18.8
Q ss_pred EEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEE
Q psy5109 27 KIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKY 61 (145)
Q Consensus 27 kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky 61 (145)
++.+.-. -||.+|...|...- ++..|..+.+.
T Consensus 23 kl~meG~-VNGh~F~i~GeG~G--~P~eG~q~~~l 54 (73)
T 2a50_A 23 KTTIEGT-VNGHYFKCTGKGEG--NPFEGTQEMKI 54 (73)
T ss_dssp EEEEEEE-ETTEEEEEEEEEEE--ETTTTEEEEEE
T ss_pred EEEEEEE-ECCEEEEEEEEEee--cCCCCEEEEEE
Confidence 4444443 68999998887762 33344444443
No 8
>2r2c_A 28 kDa outer membrane protein OMP28; lipoprotein, structural genomics, PSI, MCSG, protein initiative; 1.80A {Porphyromonas gingivalis}
Probab=6.65 E-value=5.9e+02 Score=18.09 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=25.0
Q ss_pred eeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEE-e--cCC--ceEEEEEE----EecCCCCcceEEEeEEeccCeEE
Q psy5109 53 IFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSN-I--IDG--ARLAANTS----FAPQTGDKTVKLSGEYKNSLAAV 123 (145)
Q Consensus 53 v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~-l--~~G--lk~~l~~~----~~P~~~~ks~kl~~~y~~~~~~~ 123 (145)
+...++.....+...+|.++..|+..+.+..+++++ . ... .++.+-.. -.|+. ........|.|+++--
T Consensus 41 ~~~~i~~~l~~~a~~~I~l~a~~~~~~~i~v~~~~~~~~~~~~~~~~L~v~LvED~i~~~Q~--~G~n~~~~y~HnhVvR 118 (183)
T 2r2c_A 41 WDVPIAEQMEQKAKINIFAVAEYTDTQKIKVTVKGKILEGNTLPKSMVQVYLLEDKLIAPQV--DGNTTVENYEHNHVLR 118 (183)
T ss_dssp CCCCCC-------CEEEEEEEEEEETTEEEEEEEEEECTTCCCCSEEEEEEEEEEC-------------------CEEEE
T ss_pred HHHHHHHHHccCCCceEEEEEEecCCCeEEEEEEEEEeccCCCCCeEEEEEEEECCceeeec--CCCCCCcCcEeceEEE
Confidence 344444443333333778888887445577666666 3 222 34333321 01221 2334455788887643
No 9
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=6.65 E-value=2.9e+02 Score=23.02 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=27.6
Q ss_pred ceEEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEecc
Q psy5109 25 VIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKN 65 (145)
Q Consensus 25 ~~kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~ 65 (145)
++++.+.-. -||.+|+..|... +.+-.|.++.+++...
T Consensus 172 ~~~~~~~g~-~ng~~f~~~g~g~--g~~~~g~~~~~~~~~~ 209 (450)
T 3sg6_A 172 PILVELDGD-VNGHKFSVSGEGE--GDATYGKLTLKFICTT 209 (450)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEE--EEGGGTEEEEEEEETT
T ss_pred ceEEEEEEE-ECCEEEEEEeccc--cCCCCCcEEEEEEEcC
Confidence 344455554 7999999999888 4467788888887643
No 10
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=6.61 E-value=5.4e+02 Score=17.57 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=0.0
Q ss_pred eEEEEEeccCCCeEEEEeE---eeecCCCceeEeeEEEEEeccccCcEEE
Q psy5109 26 IKIDLKTKTDSGVEFNSGG---TAQLESGKIFGTLESKYKAKNYAGLTFS 72 (145)
Q Consensus 26 ~kl~~kT~t~~gv~fts~g---~~~~~~~~v~G~le~ky~~~~~~Glt~~ 72 (145)
+.|+++|..++|+=|.... .....-....|.++.+|..... .+++.
T Consensus 30 is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~-~~~~~ 78 (170)
T 1d2s_A 30 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWA-QLTVG 78 (170)
T ss_dssp EEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSC-EEEEE
T ss_pred EEEEEEeCCCCEEEEEecCCCCCCEEEEEEeCCEEEEEEECCCc-eEEEe
Done!