Query psy5109
Match_columns 145
No_of_seqs 106 out of 321
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 17:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5109.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5109hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t95a3 d.58.11.3 (A:162-234) 12.0 1.1E+02 0.0079 17.8 3.3 21 68-88 31-51 (73)
2 d1xrxa1 a.43.1.7 (A:1-35) SeqA 7.8 20 0.0015 18.2 -1.2 13 7-19 19-31 (35)
3 d1ip9a_ d.15.2.2 (A:) Bud emer 7.6 1.2E+02 0.0089 17.6 2.3 25 102-126 5-29 (85)
4 d1ng7a_ a.178.1.1 (A:) Soluble 7.2 75 0.0055 17.9 1.1 10 1-10 1-10 (60)
5 d2dexx2 b.6.1.6 (X:4-112) Pept 7.2 2.2E+02 0.016 17.7 3.5 77 25-121 21-98 (109)
6 d1osma_ f.4.3.1 (A:) Porin {Kl 6.4 2.8E+02 0.02 18.7 4.3 46 53-105 13-64 (342)
7 d2g3ra1 b.34.9.1 (A:1485-1537) 6.4 2.1E+02 0.015 15.1 4.6 26 68-93 4-30 (53)
8 d1uisa_ d.22.1.1 (A:) Red fluo 6.3 1.5E+02 0.011 20.8 2.7 36 27-65 14-49 (227)
9 d1e42a2 d.105.1.1 (A:825-937) 6.3 3E+02 0.022 16.9 3.9 30 71-100 65-95 (113)
10 d2zfga1 f.4.3.1 (A:1-340) Pori 5.9 2.2E+02 0.016 19.4 3.4 19 83-101 41-63 (340)
No 1
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.96 E-value=1.1e+02 Score=17.76 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.6
Q ss_pred CcEEEEEEcCCCcEEEEEEEE
Q psy5109 68 GLTFSEKWNTDNVLTTEVSSN 88 (145)
Q Consensus 68 Glt~~~kw~t~n~l~t~i~~~ 88 (145)
|=-..|.|.+|+.+...+++.
T Consensus 31 g~i~kEeW~~DGSw~~vveiP 51 (73)
T d1t95a3 31 GGVTREEWQRDGSWICVMRIP 51 (73)
T ss_dssp CCEEEEEECTTSCEEEEEEEE
T ss_pred CcchhhcccCCCcEEEEEEec
Confidence 434688999999999999876
No 2
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=7.77 E-value=20 Score=18.22 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.3
Q ss_pred CCccccccccccC
Q psy5109 7 GDLGKHARDLFSK 19 (145)
Q Consensus 7 ~DiGK~ArDlL~k 19 (145)
-+||..|.|+|.+
T Consensus 19 ~~iGEsaSdILRR 31 (35)
T d1xrxa1 19 KHIGESASDILRR 31 (35)
T ss_dssp SSTTCCHHHHHHH
T ss_pred hHhccCHHHHHHH
Confidence 4789999998754
No 3
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.60 E-value=1.2e+02 Score=17.56 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=19.7
Q ss_pred ecCCCCcceEEEeEEeccCeEEEEE
Q psy5109 102 APQTGDKTVKLSGEYKNSLAAVNLE 126 (145)
Q Consensus 102 ~P~~~~ks~kl~~~y~~~~~~~~~~ 126 (145)
.|..+.++.|+++.|..+.+.+...
T Consensus 5 s~~~~~~~ikVKv~~~~D~~~~~l~ 29 (85)
T d1ip9a_ 5 SSTSGLKTTKIKFYYKDDIFALMLK 29 (85)
T ss_dssp CCCCCCCCEEEEECBTTCCEEEEEC
T ss_pred CCCCCCCCEEEEEEECCcEEEEEeC
Confidence 3556678999999999998877654
No 4
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=7.24 E-value=75 Score=17.92 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=6.1
Q ss_pred CCCCCCCCcc
Q psy5109 1 MAPPLYGDLG 10 (145)
Q Consensus 1 M~pp~f~DiG 10 (145)
|-||.|.||-
T Consensus 1 ~GPp~yk~l~ 10 (60)
T d1ng7a_ 1 MGPLQYKDLK 10 (60)
T ss_dssp CCSSCCCCCS
T ss_pred CCCCcccceE
Confidence 5566676653
No 5
>d2dexx2 b.6.1.6 (X:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.16 E-value=2.2e+02 Score=17.65 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=42.6
Q ss_pred ceEEEEEeccCCC-eEEEEeEeeecCCCceeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEEecCCceEEEEEEEec
Q psy5109 25 VIKIDLKTKTDSG-VEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAP 103 (145)
Q Consensus 25 ~~kl~~kT~t~~g-v~fts~g~~~~~~~~v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~l~~Glk~~l~~~~~P 103 (145)
.+.+|+...++.| ..|+..++..-. =.+..+.+++-+ . +-...|- |.+++.+.+... .|
T Consensus 21 e~~lDv~~~AP~g~~sF~v~~SpgV~-V~v~~s~~~~~~--~----~g~~rWp------------L~~~~ev~v~M~-ap 80 (109)
T d2dexx2 21 LTQLDICSSAPEDCTSFSINASPGVV-VDIAHSPPAKKK--S----TGSSTWP------------LDPGVEVTLTMK-AA 80 (109)
T ss_dssp CEEEECSTTCC---CEEEEEECTTEE-EEC--------------------CEE------------CCTTCCEEEEEC-SC
T ss_pred EEEEEeecCCCCCCeEEEEEcCCCeE-EEEecCCccccc--c----CCccccc------------CCCCcEEEEEEc-CC
Confidence 4577777777777 356666544431 112222222211 0 1222333 788888888888 88
Q ss_pred CCCCcceEEEeEEeccCe
Q psy5109 104 QTGDKTVKLSGEYKNSLA 121 (145)
Q Consensus 104 ~~~~ks~kl~~~y~~~~~ 121 (145)
.......|+.+.|-.+..
T Consensus 81 S~~~~D~KV~vsYyg~~~ 98 (109)
T d2dexx2 81 SGSTGDQKVQISYYGPKT 98 (109)
T ss_dssp CSSTTCEEEEEEEEETTE
T ss_pred CCcCCCCEEEEEEeCCCC
Confidence 888889999999987743
No 6
>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.41 E-value=2.8e+02 Score=18.71 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=25.3
Q ss_pred eeEeeEEEEEeccccCcEEEEEEcCCCcEEEEEEEE----ecCCceEEEEEEE--ecCC
Q psy5109 53 IFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSN----IIDGARLAANTSF--APQT 105 (145)
Q Consensus 53 v~G~le~ky~~~~~~Glt~~~kw~t~n~l~t~i~~~----l~~Glk~~l~~~~--~P~~ 105 (145)
+.|.|++.+.+.+..+... .+ -.++|.++ |.+||++.+..-+ .++.
T Consensus 13 ~yG~i~~~~~~~~~~~~~~---~~----~~SR~G~~g~edLg~gl~a~~~lE~~~~~~~ 64 (342)
T d1osma_ 13 LYGKIDGLHYFSDDKDVDG---DQ----TYMRLGVKGETQINDQLTGYGQWEYNVQANN 64 (342)
T ss_dssp EEEEEEEEEEEESSTTTCE---EC----CEEEEEEEEEEECSSSCEEEEEEEEEEECSS
T ss_pred EEEEEEEEEEEccCCcccC---cc----cceEEEEEEEEECCCCcEEEEEEEEEEEcCC
Confidence 5566666666544312221 22 24556666 8899988766543 4543
No 7
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=2.1e+02 Score=15.09 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=17.4
Q ss_pred CcEEEEEEcCCCcEEE-EEEEEecCCc
Q psy5109 68 GLTFSEKWNTDNVLTT-EVSSNIIDGA 93 (145)
Q Consensus 68 Glt~~~kw~t~n~l~t-~i~~~l~~Gl 93 (145)
||.+-.||.+++-+-+ +|+-++..|-
T Consensus 4 glrvvakwssn~yfysg~i~rd~g~~r 30 (53)
T d2g3ra1 4 GLRVVAKWSSNGYFYSGKITRDVGAGK 30 (53)
T ss_dssp TCEEEEECTTTCCEEEEEEEEEEETTE
T ss_pred eEEEEEEeecCCEEEeeEEehhcCCce
Confidence 7888889998887654 4443355554
No 8
>d1uisa_ d.22.1.1 (A:) Red fluorescent protein fp61 {Sea anemone (Entacmaea quadricolor) [TaxId: 6118]}
Probab=6.28 E-value=1.5e+02 Score=20.81 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=24.8
Q ss_pred EEEEEeccCCCeEEEEeEeeecCCCceeEeeEEEEEecc
Q psy5109 27 KIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKN 65 (145)
Q Consensus 27 kl~~kT~t~~gv~fts~g~~~~~~~~v~G~le~ky~~~~ 65 (145)
++.+.-. -||.+|+..|... +++..|..+.+++...
T Consensus 14 k~~meG~-VNGh~F~i~GeG~--G~p~eG~q~~~l~vtk 49 (227)
T d1uisa_ 14 MVVMEGS-VNGYQFKCTGEGD--GNPYMGTQTMRIKVVE 49 (227)
T ss_dssp EEEEEEE-ETTEEEEEEEEEE--EETTTTEEEEEEEEEE
T ss_pred EEEEEEE-ECCEEEEEEEeee--cCCCCCEEEEEEEEec
Confidence 3344343 6899999998887 4577777777776543
No 9
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=3e+02 Score=16.85 Aligned_cols=30 Identities=13% Similarity=-0.051 Sum_probs=18.8
Q ss_pred EEEEEcCCCcEEEEEEEE-ecCCceEEEEEE
Q psy5109 71 FSEKWNTDNVLTTEVSSN-IIDGARLAANTS 100 (145)
Q Consensus 71 ~~~kw~t~n~l~t~i~~~-l~~Glk~~l~~~ 100 (145)
++.|-.++-.+..|+++. -.|++|+.+++.
T Consensus 65 fS~K~~n~i~~L~El~~~~g~~~~kl~lKt~ 95 (113)
T d1e42a2 65 QSLKLTNGIWILAELRIQPGNPNYTLSLKCR 95 (113)
T ss_dssp EEEEBTTSCEEEEEEEECTTCSCEEEEEEES
T ss_pred EEEEcCCCCEEEEEEEEecCCCcEEEEEecC
Confidence 455666666677777766 456666666664
No 10
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different sequences [TaxId: 562]}
Probab=5.92 E-value=2.2e+02 Score=19.38 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=13.5
Q ss_pred EEEEEE----ecCCceEEEEEEE
Q psy5109 83 TEVSSN----IIDGARLAANTSF 101 (145)
Q Consensus 83 t~i~~~----l~~Glk~~l~~~~ 101 (145)
++|.++ |.+|+++.....+
T Consensus 41 SRiG~~g~~~l~~gl~a~~~~E~ 63 (340)
T d2zfga1 41 ARLGFKGETQINSDLTGYGQWEY 63 (340)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEEEEEECCCCeEEEEEEEE
Confidence 556666 8899988766654
Done!