RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5109
         (145 letters)



>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
           lactis, isozyme A [TaxId: 1358]}
          Length = 311

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 125 LESEFKSL---NPVISAAGVLGYN 145
           L + F +    NP ++A+GV    
Sbjct: 2   LNTTFANAKFANPFMNASGVHCMT 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,265
Number of extensions: 18271
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.1 bits)