Query psy511
Match_columns 67
No_of_seqs 103 out of 325
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:30:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 97.8 4.9E-05 1.7E-09 52.0 6.6 52 2-66 162-213 (357)
2 1zpw_X Hypothetical protein TT 66.1 7.6 0.00026 21.6 3.4 25 40-64 5-31 (90)
3 2ivy_A Hypothetical protein SS 63.8 11 0.00039 21.4 3.9 23 40-62 4-28 (101)
4 1ty4_C Egg laying defective EG 55.6 2.1 7E-05 22.6 -0.3 19 46-64 20-38 (57)
5 3exc_X Uncharacterized protein 53.0 18 0.00062 20.2 3.4 23 40-62 5-29 (91)
6 3oq2_A Crispr-associated prote 43.1 29 0.00098 19.7 3.3 25 39-63 8-39 (103)
7 2i0x_A Hypothetical protein PF 40.7 18 0.00061 19.9 2.1 24 41-64 3-27 (85)
8 2np2_A HBB; protein-DNA comple 36.2 51 0.0017 18.6 3.6 31 27-57 74-106 (108)
9 1i17_A Mouse doppel, prion-lik 33.3 14 0.00047 21.6 0.8 11 4-14 81-91 (107)
10 2vt1_B Surface presentation of 29.2 72 0.0025 18.0 3.5 25 42-66 19-44 (93)
11 1x6i_A Hypothetical protein YG 29.0 21 0.00071 20.1 1.1 12 3-14 8-19 (91)
12 1lg4_A Doppel protein, prion-l 28.7 18 0.00062 21.7 0.8 10 4-13 105-114 (129)
13 2wh6_B BCL-2-like protein 11; 28.0 38 0.0013 15.0 1.6 15 49-63 7-21 (26)
14 3bzy_B ESCU; auto cleavage pro 27.7 73 0.0025 17.5 3.2 25 42-66 19-44 (83)
15 1f46_A Cell division protein Z 27.7 1E+02 0.0034 18.3 4.4 63 4-66 41-113 (140)
16 2vog_B BCL-2-modifying factor; 26.6 26 0.00089 15.6 1.0 14 49-62 8-21 (27)
17 4es1_A BH0342 protein; ferredo 26.5 29 0.00098 19.8 1.4 17 48-64 21-37 (100)
18 3t7y_A YOP proteins translocat 23.6 93 0.0032 17.6 3.2 24 43-66 35-59 (97)
19 3c01_E Surface presentation of 23.4 94 0.0032 17.6 3.2 25 42-66 19-44 (98)
20 3t76_A VANU, transcriptional r 22.9 32 0.0011 18.7 1.1 13 52-64 66-78 (88)
21 3l3e_A DNA topoisomerase 2-bin 21.9 1.1E+02 0.0037 16.7 3.3 17 49-65 29-45 (107)
22 1zpv_A ACT domain protein; str 21.6 50 0.0017 17.2 1.7 18 48-65 60-77 (91)
23 3rlk_A A1 protein; beta-barrel 21.3 15 0.0005 23.5 -0.6 12 9-20 88-99 (192)
24 1pq1_B BCL2-like protein 11; B 21.2 25 0.00086 16.4 0.4 14 50-63 8-21 (33)
25 2k6o_A Cathelicidin antimicrob 20.8 47 0.0016 16.0 1.3 13 47-59 10-22 (37)
26 2wiu_B HTH-type transcriptiona 20.7 60 0.0021 16.4 1.9 15 51-65 54-68 (88)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=97.83 E-value=4.9e-05 Score=51.97 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=39.5
Q ss_pred hhHHHHHHHhhCCcEEEEeeecCCcccCCCCCCceeeEEEEEEEecHHHHHHHHHhhhhcCCeee
Q psy511 2 PAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGKKLSSV 66 (67)
Q Consensus 2 ~~fer~lwR~~RGN~~~~~~~i~~~~~d~~~~~~~~k~vFiv~~~G~~l~~Ki~KIc~~f~a~~~ 66 (67)
..|++.|||+++|..+.... +...+++|+++++ ....++|++||+++|++.|
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~vv~~~-~~~~~~v~~il~s~~f~~~ 213 (357)
T 3rrk_A 162 EAVRKALQEALADRFVLEAE------------PLENQLAALVVVK-RSELEAARSSLSRLGLAEL 213 (357)
T ss_dssp HHHHHHHHHHHTTSCEEEEE------------ECSSSEEEEEEEE-GGGHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHHhcCCeEEEEee------------cCCCcEEEEEEEE-HHHHHHHHHHHHHCCCeec
Confidence 47899999999995443221 1125788999996 5577899999999999876
No 2
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=66.14 E-value=7.6 Score=21.64 Aligned_cols=25 Identities=4% Similarity=0.262 Sum_probs=19.0
Q ss_pred EEEEEEe--cHHHHHHHHHhhhhcCCe
Q psy511 40 VFIIFFQ--GDQLKTRVMKICEGKKLS 64 (67)
Q Consensus 40 vFiv~~~--G~~l~~Ki~KIc~~f~a~ 64 (67)
-++|.|- .+.-+.|+.|+|.++|.+
T Consensus 5 ~~lV~YDI~~~kr~~kv~k~l~~yg~r 31 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLANLLKSYGER 31 (90)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHTTEEE
T ss_pred EEEEEEeCCChHHHHHHHHHHHHhCcc
Confidence 3566663 468899999999999844
No 3
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=63.77 E-value=11 Score=21.39 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=18.5
Q ss_pred EEEEEE--ecHHHHHHHHHhhhhcC
Q psy511 40 VFIIFF--QGDQLKTRVMKICEGKK 62 (67)
Q Consensus 40 vFiv~~--~G~~l~~Ki~KIc~~f~ 62 (67)
-++|+| +.+..+.|+.|+|..+|
T Consensus 4 ~~lV~YDI~~~kr~~kv~k~L~~yG 28 (101)
T 2ivy_A 4 LYLIFYDITDDNLRNRVAEFLKKKG 28 (101)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCChHHHHHHHHHHHHhC
Confidence 356666 35789999999999998
No 4
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=55.56 E-value=2.1 Score=22.64 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=16.3
Q ss_pred ecHHHHHHHHHhhhhcCCe
Q psy511 46 QGDQLKTRVMKICEGKKLS 64 (67)
Q Consensus 46 ~G~~l~~Ki~KIc~~f~a~ 64 (67)
-|-.|+.|+-+.|+.|.+.
T Consensus 20 i~~~IG~KL~~MCDdFDae 38 (57)
T 1ty4_C 20 IGYEIGSKLAAMCDDFDAQ 38 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999764
No 5
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=53.03 E-value=18 Score=20.24 Aligned_cols=23 Identities=4% Similarity=0.218 Sum_probs=16.8
Q ss_pred EEEEEE--ecHHHHHHHHHhhhhcC
Q psy511 40 VFIIFF--QGDQLKTRVMKICEGKK 62 (67)
Q Consensus 40 vFiv~~--~G~~l~~Ki~KIc~~f~ 62 (67)
-.+|+| +.+.-+.|+.|+|..+|
T Consensus 5 ~vlV~YDI~~~krr~kv~k~l~~yG 29 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNKLANNLKKLG 29 (91)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCCchHHHHHHHHHHHhC
Confidence 345666 23567799999999987
No 6
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=43.05 E-value=29 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEEEEe-c-H-----HHHHHHHHhhhhcCC
Q psy511 39 SVFIIFFQ-G-D-----QLKTRVMKICEGKKL 63 (67)
Q Consensus 39 ~vFiv~~~-G-~-----~l~~Ki~KIc~~f~a 63 (67)
+-.+|+|- . + .-+.|+.|+|..+|-
T Consensus 8 M~vlV~YDI~~~t~~g~kr~~kv~k~l~~yG~ 39 (103)
T 3oq2_A 8 MLVLISYDVSFEDPGGQRRLRRIAKACQDYGQ 39 (103)
T ss_dssp EEEEEEEECCTTSHHHHHHHHHHHHHHGGGEE
T ss_pred EEEEEEEECCCCCchhHHHHHHHHHHHHHhCc
Confidence 44556662 3 2 689999999999873
No 7
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=40.71 E-value=18 Score=19.91 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=16.8
Q ss_pred EEEEEe-cHHHHHHHHHhhhhcCCe
Q psy511 41 FIIFFQ-GDQLKTRVMKICEGKKLS 64 (67)
Q Consensus 41 Fiv~~~-G~~l~~Ki~KIc~~f~a~ 64 (67)
.+|.|- ++.-+.|+.|+|+.++..
T Consensus 3 vlv~YDI~~kR~~kv~k~l~~yg~r 27 (85)
T 2i0x_A 3 IVVVYDVGVERVNKVKKFLRMHLNW 27 (85)
T ss_dssp EEEEEECCSSSHHHHHHHHTTTSEE
T ss_pred EEEEeeCChHHHHHHHHHHHHhCcc
Confidence 345552 456789999999998643
No 8
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=36.20 E-value=51 Score=18.55 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=21.3
Q ss_pred ccCCCCCCce--eeEEEEEEEecHHHHHHHHHh
Q psy511 27 LEDINSGDPV--YKSVFIIFFQGDQLKTRVMKI 57 (67)
Q Consensus 27 ~~d~~~~~~~--~k~vFiv~~~G~~l~~Ki~KI 57 (67)
-.||.||+.+ .-.-=+.|-+|..|++.+++|
T Consensus 74 grNP~Tge~i~i~a~~~v~Fkp~k~Lk~~v~~~ 106 (108)
T 2np2_A 74 ARNPQTGEYVKVLDHHVAYFRPGKDLKERVWGI 106 (108)
T ss_dssp CBCTTTCCBCCBCCEEEEEEEECHHHHHHHHSC
T ss_pred cCCCCCCcEEEecCCCcEEEEECHHHHHHHHhh
Confidence 3689999853 222335566899999998764
No 9
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=33.28 E-value=14 Score=21.63 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=8.7
Q ss_pred HHHHHHHhhCC
Q psy511 4 FERMLWRACRG 14 (67)
Q Consensus 4 fer~lwR~~RG 14 (67)
.+|+|||..|-
T Consensus 81 ~qriLwrLirE 91 (107)
T 1i17_A 81 HQRVLWRLIKE 91 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999998763
No 10
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=29.22 E-value=72 Score=17.99 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=19.5
Q ss_pred EEEEec-HHHHHHHHHhhhhcCCeee
Q psy511 42 IIFFQG-DQLKTRVMKICEGKKLSSV 66 (67)
Q Consensus 42 iv~~~G-~~l~~Ki~KIc~~f~a~~~ 66 (67)
+|...| +.+..||+++++..+..++
T Consensus 19 ~VvAKG~~~~A~~I~e~A~e~gVPi~ 44 (93)
T 2vt1_B 19 FISLIETNQCALAVRKYANEVGIPTV 44 (93)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHcCCCEE
Confidence 355556 8999999999998887653
No 11
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=28.96 E-value=21 Score=20.07 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.7
Q ss_pred hHHHHHHHhhCC
Q psy511 3 AFERMLWRACRG 14 (67)
Q Consensus 3 ~fer~lwR~~RG 14 (67)
...|++||+=||
T Consensus 8 ~~~RL~~rsrRG 19 (91)
T 1x6i_A 8 NKARIHWACRRG 19 (91)
T ss_dssp CHHHHHHHTCCS
T ss_pred HHHHHHHHHHcc
Confidence 457999999777
No 12
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=28.66 E-value=18 Score=21.75 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=8.3
Q ss_pred HHHHHHHhhC
Q psy511 4 FERMLWRACR 13 (67)
Q Consensus 4 fer~lwR~~R 13 (67)
.+|+|||..|
T Consensus 105 ~qRiLwrLir 114 (129)
T 1lg4_A 105 HQQVLWRLVQ 114 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5899999865
No 13
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=28.00 E-value=38 Score=14.95 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhcCC
Q psy511 49 QLKTRVMKICEGKKL 63 (67)
Q Consensus 49 ~l~~Ki~KIc~~f~a 63 (67)
-+.+-+++|-|.|++
T Consensus 7 ~iAqELRRIGDeFN~ 21 (26)
T 2wh6_B 7 WIAQELRRIGDEFNA 21 (26)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHhh
Confidence 367889999999988
No 14
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=27.69 E-value=73 Score=17.48 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEec-HHHHHHHHHhhhhcCCeee
Q psy511 42 IIFFQG-DQLKTRVMKICEGKKLSSV 66 (67)
Q Consensus 42 iv~~~G-~~l~~Ki~KIc~~f~a~~~ 66 (67)
+|...| +.+..||+++++..|..++
T Consensus 19 ~VvAKG~~~~A~~I~~~A~e~~VPi~ 44 (83)
T 3bzy_B 19 LVIETGKDAKALQIIKLAELYDIPVI 44 (83)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHcCCCEE
Confidence 345556 8999999999998887653
No 15
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=27.66 E-value=1e+02 Score=18.35 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCcEEEEeeecCCc-ccCCCCCC-ceeeEEEEEEEec--------HHHHHHHHHhhhhcCCeee
Q psy511 4 FERMLWRACRGNVFLRQAEIETP-LEDINSGD-PVYKSVFIIFFQG--------DQLKTRVMKICEGKKLSSV 66 (67)
Q Consensus 4 fer~lwR~~RGN~~~~~~~i~~~-~~d~~~~~-~~~k~vFiv~~~G--------~~l~~Ki~KIc~~f~a~~~ 66 (67)
|.|-.+..-.|++.+....+.+| ..||...+ ...-.+|.+--++ +.+.+=-+++++.+++.+.
T Consensus 41 fhr~~~~~g~g~vlFSlan~~~pg~Fd~~~~~~~t~gvtlfl~lP~~~~~~~~F~~M~~~A~~lA~~L~g~ll 113 (140)
T 1f46_A 41 YHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQLFKLMLQSAQHIADEVGGVVL 113 (140)
T ss_dssp EEEESSTTCCSCEEEEEEESSTTCCCCTTCCSCEESEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred eEEccccCCCCCEEEEEEecCCCCCCCcchhcCccCcEEEEEECCCCCcHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 33434445678888888888444 55665222 3344555555555 4677888889999988764
No 16
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=26.58 E-value=26 Score=15.64 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhhcC
Q psy511 49 QLKTRVMKICEGKK 62 (67)
Q Consensus 49 ~l~~Ki~KIc~~f~ 62 (67)
++.+|+.=|.|.||
T Consensus 8 ~Ia~KLQcI~DQFH 21 (27)
T 2vog_B 8 QIARKLQCIADQFH 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78899999999886
No 17
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=26.47 E-value=29 Score=19.82 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhcCCe
Q psy511 48 DQLKTRVMKICEGKKLS 64 (67)
Q Consensus 48 ~~l~~Ki~KIc~~f~a~ 64 (67)
..-+.|+.|+|+.++-+
T Consensus 21 ~kR~~kv~k~~~~yg~r 37 (100)
T 4es1_A 21 TKRLRKVAKACQNYGQR 37 (100)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHhChh
Confidence 35688999999998744
No 18
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=23.55 E-value=93 Score=17.63 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=18.8
Q ss_pred EEEec-HHHHHHHHHhhhhcCCeee
Q psy511 43 IFFQG-DQLKTRVMKICEGKKLSSV 66 (67)
Q Consensus 43 v~~~G-~~l~~Ki~KIc~~f~a~~~ 66 (67)
|...| +.+.++|+++++..|..++
T Consensus 35 VvAKG~~~~A~~I~~~A~e~gVPi~ 59 (97)
T 3t7y_A 35 IIAMGVNLRAKRIIAEAEKYGVPIM 59 (97)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEeCcHHHHHHHHHHHHcCCeEE
Confidence 44555 8999999999998887653
No 19
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=23.43 E-value=94 Score=17.65 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=19.3
Q ss_pred EEEEec-HHHHHHHHHhhhhcCCeee
Q psy511 42 IIFFQG-DQLKTRVMKICEGKKLSSV 66 (67)
Q Consensus 42 iv~~~G-~~l~~Ki~KIc~~f~a~~~ 66 (67)
+|...| +.+..||+++++..+..++
T Consensus 19 ~VvAKG~~~~A~~I~e~A~e~gVPi~ 44 (98)
T 3c01_E 19 MISVYETNQRALAVRAYAEKVGVPVI 44 (98)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHcCCCee
Confidence 345556 8999999999998877653
No 20
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.95 E-value=32 Score=18.71 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=8.3
Q ss_pred HHHHHhhhhcCCe
Q psy511 52 TRVMKICEGKKLS 64 (67)
Q Consensus 52 ~Ki~KIc~~f~a~ 64 (67)
..+.|||+.|+++
T Consensus 66 ~~l~kIa~~L~v~ 78 (88)
T 3t76_A 66 TVLLAICEYLNCD 78 (88)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCcC
Confidence 4566777777664
No 21
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=21.94 E-value=1.1e+02 Score=16.69 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhcCCee
Q psy511 49 QLKTRVMKICEGKKLSS 65 (67)
Q Consensus 49 ~l~~Ki~KIc~~f~a~~ 65 (67)
.-+..++++++.+||++
T Consensus 29 ~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 29 KKQSELNGIAASLGADY 45 (107)
T ss_dssp GGHHHHHHHHHHTTCEE
T ss_pred HhHHHHHHHHHHcCCEE
Confidence 56889999999999875
No 22
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=21.56 E-value=50 Score=17.15 Aligned_cols=18 Identities=6% Similarity=0.040 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhcCCee
Q psy511 48 DQLKTRVMKICEGKKLSS 65 (67)
Q Consensus 48 ~~l~~Ki~KIc~~f~a~~ 65 (67)
+++.++++++++.++..+
T Consensus 60 ~~l~~~L~~~~~~~~~~~ 77 (91)
T 1zpv_A 60 TYLRNEFEAFGQTLNVKI 77 (91)
T ss_dssp HHHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 689999999999888765
No 23
>3rlk_A A1 protein; beta-barrel, polyproline helix, structural protein; HET: PG4; 1.76A {Enterobacteria phage qbeta} PDB: 3rlc_A*
Probab=21.26 E-value=15 Score=23.47 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=9.9
Q ss_pred HHhhCCcEEEEe
Q psy511 9 WRACRGNVFLRQ 20 (67)
Q Consensus 9 wR~~RGN~~~~~ 20 (67)
+|-||||-|+..
T Consensus 88 ~RrCRGNGYiDL 99 (192)
T 3rlk_A 88 FRGCRGNGYIDL 99 (192)
T ss_dssp BCEECCTTEEEC
T ss_pred eccccCCceEcc
Confidence 588999999764
No 24
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=21.19 E-value=25 Score=16.41 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhcCC
Q psy511 50 LKTRVMKICEGKKL 63 (67)
Q Consensus 50 l~~Ki~KIc~~f~a 63 (67)
+.|.+++|-|.|+|
T Consensus 8 IAQELRRIGDeFNa 21 (33)
T 1pq1_B 8 IAQELRRIGDEFNE 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhc
Confidence 67889999999886
No 25
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=20.84 E-value=47 Score=15.95 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=8.2
Q ss_pred cHHHHHHHHHhhh
Q psy511 47 GDQLKTRVMKICE 59 (67)
Q Consensus 47 G~~l~~Ki~KIc~ 59 (67)
|+.+..+++||-+
T Consensus 10 geKig~~~kkIgQ 22 (37)
T 2k6o_A 10 KEKIGKEFKRIVQ 22 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666777777643
No 26
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.69 E-value=60 Score=16.45 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=10.9
Q ss_pred HHHHHHhhhhcCCee
Q psy511 51 KTRVMKICEGKKLSS 65 (67)
Q Consensus 51 ~~Ki~KIc~~f~a~~ 65 (67)
...+.+||+.|+++.
T Consensus 54 ~~~l~~i~~~l~~~~ 68 (88)
T 2wiu_B 54 LTTFFKILQSLELSM 68 (88)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhCCCH
Confidence 456788888888764
Done!