RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy511
         (67 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)

Query: 7   MLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFI 42
           ML  +      L Q +++  +   NS  P  K V I
Sbjct: 338 ML--SISN---LTQEQVQDYVNKTNSHLPAGKQVEI 368



 Score = 26.2 bits (57), Expect = 0.87
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 2    PAFERMLW-RACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIF--FQGDQLKTRVMKIC 58
             A  + +W RA       +     + L DI   +P   ++ I F   +G +++     + 
Sbjct: 1640 KAA-QDVWNRADN---HFKDTYGFSIL-DIVINNP--VNLTIHFGGEKGKRIRENYSAMI 1692


>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
           alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
           2e8z_A* 2e9b_A*
          Length = 718

 Score = 23.9 bits (52), Expect = 4.4
 Identities = 3/21 (14%), Positives = 6/21 (28%)

Query: 23  IETPLEDINSGDPVYKSVFII 43
           I+T L            + + 
Sbjct: 413 IDTVLYMKEKATKAKPGILLF 433


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,005,015
Number of extensions: 42905
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 3
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)