RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy511
         (67 letters)



>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 272

 Score = 22.9 bits (48), Expect = 4.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 19  RQAEIETPLEDINSG 33
           RQA I   L +I SG
Sbjct: 254 RQAVITKELIEIISG 268


>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium
          discoideum [TaxId: 44689]}
          Length = 102

 Score = 22.5 bits (48), Expect = 4.3
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 5/32 (15%)

Query: 12 CRGNVFLRQAEIETPLEDINSGDPVYKSVFII 43
            G+   + AE+      +NSGD      F++
Sbjct: 9  ISGDKNAKVAEVPLATSSLNSGD-----CFLL 35


>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr
           virus [TaxId: 10376]}
          Length = 136

 Score = 22.1 bits (47), Expect = 7.8
 Identities = 3/36 (8%), Positives = 10/36 (27%), Gaps = 3/36 (8%)

Query: 30  INSGDPVYKSVFIIFFQGDQLKTRVMKICEGKKLSS 65
           +N      +   +++     L +      +   L  
Sbjct: 85  LNKYRRFCQ---LVYLHKHHLTSFYSPHSDAGVLGP 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,283
Number of extensions: 8869
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)