BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5110
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 71/149 (47%), Gaps = 34/149 (22%)
Query: 106 LCSSELYGLADSNRTTAAGLLENFGLV--------------------------AHELAHQ 139
L S+ GL D N AG +EN+GLV AHELAHQ
Sbjct: 274 LPKSDQIGLPDFN----AGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQ 329
Query: 140 WFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSD-LKGSH 198
WFGN T WW+ WL E A+ EY + EPTW ++DL V+ V D L SH
Sbjct: 330 WFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSH 389
Query: 199 AMT---SETTTPDSISETFDHIIYNKGQS 224
++ SE TP ISE FD I Y+KG S
Sbjct: 390 PLSTPASEINTPAQISELFDAISYSKGAS 418
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
++AHELAHQWFGN T +WW+ WL E A+ EY EPTW ++DL V V
Sbjct: 362 VIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVM 421
Query: 191 NSD-LKGSHAMTS---ETTTPDSISETFDHIIYNKGQS 224
D L SH +T+ E TP ISE FD I Y+KG S
Sbjct: 422 AVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGAS 459
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
++AHELAHQWFGN T +WW+ WL E A+ EY EPTW ++DL V V
Sbjct: 318 VIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVM 377
Query: 191 NSD-LKGSHAMTS---ETTTPDSISETFDHIIYNKGQS 224
D L SH +T+ E TP ISE FD I Y+KG S
Sbjct: 378 AVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGAS 415
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
++AHELAHQWFGN T +WW+ WL E A+ EY EPTW ++DL V V
Sbjct: 319 VIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVM 378
Query: 191 NSD-LKGSHAMTS---ETTTPDSISETFDHIIYNKGQS 224
D L SH +T+ E TP ISE FD I Y+KG S
Sbjct: 379 AVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGAS 416
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
++AH+LAHQWFGN T +WW+ WL E A+ EY EPTW ++DL V V
Sbjct: 318 VIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVM 377
Query: 191 NSD-LKGSHAMTS---ETTTPDSISETFDHIIYNKGQS 224
D L SH +T+ E TP ISE FD I Y+KG S
Sbjct: 378 AVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGAS 415
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
++AHE+AHQWFG+ T WW+ WL ES AT Y + + P W F V + A
Sbjct: 262 VIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGAL 321
Query: 191 NSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
SD LK +H + + PD IS+ FD I Y KG S
Sbjct: 322 RSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGAS 356
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
++AHE+AHQWFG+ T WW+ WL ES AT Y + + P W F V + A
Sbjct: 262 VIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGAL 321
Query: 191 NSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
SD LK +H + + PD IS+ FD I Y KG S
Sbjct: 322 RSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGAS 356
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
L D+ +++A+ L+ VAHELAHQWFGN T WW+ WL E A E+ VS P
Sbjct: 297 LFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHP 356
Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
++ D F + L SH +++ P I E FD + Y+KG
Sbjct: 357 ELKVGDYFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKG 405
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
L D ++A+ L ++AHELAHQWFGN T WW+ WLKE A E V+ P
Sbjct: 350 LFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYP 409
Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
+ +D F+ +V L S ++ TP I E FD + YNKG
Sbjct: 410 ELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKG 458
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
L D+ +++A+ L VAHELAHQWFGN T WW+ WL E A E+ VS P
Sbjct: 288 LFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHP 347
Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
++ D F + L SH +++ P I E FD + Y+KG
Sbjct: 348 ELKVGDYFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKG 396
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
L D+ +++A+ L VAHELAHQWFGN T WW+ WL E A E+ VS P
Sbjct: 339 LFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHP 398
Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
++ D F + L SH +++ P I E FD + Y+KG
Sbjct: 399 ELKVGDYFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKG 447
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
L D ++A+ L ++AHELAHQWFGN T WW+ WL E A E V+ P
Sbjct: 350 LFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYP 409
Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
+ +D F+ +V L S ++ TP I E FD + YNKG
Sbjct: 410 ELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKG 458
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 113 GLADSNRTTAAGLL-----ENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
G+ N T A L N ++AHELAH W GN T W++ WL E E +
Sbjct: 275 GMESPNMTFATPTLIAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRI 334
Query: 168 VSWV--EPTWRMEDLFVVEQVQVAFNSDLKGSHAMTS------ETTTPDSISETFDHIIY 219
+ + EPT L +Q + +S +K ++ + T PD + F + Y
Sbjct: 335 IGAIHGEPTRHFSALIGWSDLQNSIDS-MKDPERFSTLVQNLNDNTDPD---DAFSTVPY 390
Query: 220 NKG 222
KG
Sbjct: 391 EKG 393
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 113 GLADSNRTTAAGLL-----ENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
G+ N T A L N ++AHELAH W GN T W++ WL E E +
Sbjct: 275 GMESPNMTFATPTLLAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRI 334
Query: 168 VSWV--EPTWRMEDLFVVEQVQVAFNSDLKGSHAMTS------ETTTPDSISETFDHIIY 219
+ + EPT L +Q + +S +K ++ + T PD + F + Y
Sbjct: 335 IGAIHGEPTRHFSALIGWSDLQNSIDS-MKDPERFSTLVQNLNDNTDPD---DAFSTVPY 390
Query: 220 NKG 222
KG
Sbjct: 391 EKG 393
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 97 VLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLK 156
+L LPP E L+ T AG L+AHELAH W GN T W WL
Sbjct: 263 LLMLPPSFPFGGMENPRLSFITPTVVAGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLN 322
Query: 157 ESVATLFEYYVVSWVEPTWRMEDLFVVEQV 186
E + E ++ V T D V+EQ
Sbjct: 323 EGFTSYVENRIMEAVFGT----DRAVMEQA 348
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 181 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 232
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 233 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 289
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 290 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 329
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 180 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 231
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 232 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 288
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 289 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 328
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 180 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 231
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 232 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 288
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 289 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 328
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 186 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 237
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 238 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 294
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 295 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 334
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 180 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 231
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 232 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 288
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 289 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 328
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 178 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 229
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 230 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 286
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 287 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 326
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 186 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 237
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP E L T AG
Sbjct: 238 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS 294
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AH+++H W GN T W + WL E E ++
Sbjct: 295 LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 334
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 EPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCE 77
+P + K+ + +Q I ++ V+G+ +S+++ RT + E+VE
Sbjct: 181 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI--------GPRTLVWSEKEQVEKSA 232
Query: 78 QNISRTASPLFILPLSMSL----------VLFLPPVSMLCSSELYGLADSNRTTAAGLLE 127
S T S +L ++ L +L LPP + L T AG
Sbjct: 233 YEFSETES---MLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMQNPCLTFVTPTLLAGDKS 289
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYV 167
++AHE++H W GN T W + WL E E ++
Sbjct: 290 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHI 329
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 182 VVEQVQVAFNSDLK---GSHAMTSETTTPDSISETFDHIIYNKGQSPAHV 228
+ E++Q+A+ +K G A + TT I ETF +++ +SP V
Sbjct: 131 LAEELQIAYRRRIKLKSGDFADEANATTESDIEETFKRLVHKLNKSPEEV 180
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 182 VVEQVQVAFNSDLK---GSHAMTSETTTPDSISETFDHIIYNKGQSPAHV 228
+ E+VQ+A+ +K G A + TT I ETF ++ +SP V
Sbjct: 113 LAEEVQIAYRRRIKLKRGDFADEANATTESDIEETFKKLVLKLNKSPEEV 162
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 182 VVEQVQVAF---NSDLK-GSHAMTSETTTPDSISETFDHIIYNKGQSPAHV 228
+ E+VQ+A NS LK G A TT I ET ++ G+SP V
Sbjct: 111 LAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEV 161
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLF---EYYVVSW 170
LADS T +V HE H W GN T W LKE + T+F E+
Sbjct: 273 LADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGL-TVFRDQEFSGDRA 331
Query: 171 VEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
R+E++ ++ Q Q F D G A + + + + +Y KG
Sbjct: 332 SRAVRRIENIRLLRQHQ--FPED-AGPTAHPVRPASYEEXNNFYTXTVYEKG 380
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 112 YGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESV 159
Y LA ++ T L+ ++ HE H W GN T W LKE +
Sbjct: 275 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGL 322
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 112 YGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESV 159
Y LA ++ T L+ ++ HE H W GN T W LKE +
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGL 343
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 112 YGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESV 159
Y LA ++ T L+ ++ HE H W GN T W LKE +
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGL 343
>pdb|3IB3|A Chain A, Crystal Structure Of Sacol2612 - CoceNOND FAMILY HYDROLASE
FROM Staphylococcus Aureus
pdb|3IB3|B Chain B, Crystal Structure Of Sacol2612 - CoceNOND FAMILY HYDROLASE
FROM Staphylococcus Aureus
pdb|3III|A Chain A, 1.95 Angstrom Crystal Structure Of Coce/nond Family
Hydrolase (sacol2612) From Staphylococcus Aureus
Length = 560
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 39 VEISVLGSPDSKKVVFSPWSVRNVRTYYR-FKWEKVESCEQNISRTASPLFILPLSMSLV 97
V++++ GS D K V SPWS R YY +W +S N + + + L ++ V
Sbjct: 121 VKVALRGS-DKSKGVLSPWSKREAEDYYEVIEWAANQSW-SNGNIGTNGVSYLAVTQWWV 178
Query: 98 LFLPPVSMLCSSELYGLADSNRTTA 122
L P + GL D R A
Sbjct: 179 ASLNPPHLKAXIPWEGLNDXYREVA 203
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVA----TLFEYYVVSWVEPTWRMEDLFVVEQV 186
+V HE HQ+ GN T W LKE + LF + V T R+ + ++ V
Sbjct: 298 VVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV--TTRLSHVDLLRSV 355
Query: 187 QVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
Q +S SH + E+ S++ + +Y+KG
Sbjct: 356 QFLEDSS-PLSHPIRPESYV--SMANFYTTTVYDKG 388
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 27.3 bits (59), Expect = 8.7, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVA----TLFEYYVVSWVEPTWRMEDLFVVEQV 186
+V HE HQ+ GN T W LKE + LF + V T R+ + ++ V
Sbjct: 299 VVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV--TTRLSHVDLLRSV 356
Query: 187 QVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
Q +S SH + E+ S+ + +Y+KG
Sbjct: 357 QFLEDSS-PLSHPIRPESYV--SMENFYTTTVYDKG 389
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 27.3 bits (59), Expect = 8.7, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVA----TLFEYYVVSWVEPTWRMEDLFVVEQV 186
+V HE HQ+ GN T W LKE + LF + V T R+ + ++ V
Sbjct: 299 VVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV--TTRLSHVDLLRSV 356
Query: 187 QVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
Q +S SH + E+ S+ + +Y+KG
Sbjct: 357 QFLEDSS-PLSHPIRPESYV--SMENFYTTTVYDKG 389
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 27.3 bits (59), Expect = 8.7, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 131 LVAHELAHQWFGNYATPSWWSYAWLKESVA----TLFEYYVVSWVEPTWRMEDLFVVEQV 186
+V HE HQ+ GN T W LKE + LF + V T R+ + ++ V
Sbjct: 298 VVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV--TTRLSHVDLLRSV 355
Query: 187 QVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
Q +S SH + E+ S+ + +Y+KG
Sbjct: 356 QFLEDSS-PLSHPIRPESYV--SMENFYTTTVYDKG 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,833,258
Number of Sequences: 62578
Number of extensions: 347686
Number of successful extensions: 660
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 36
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)