RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5110
(284 letters)
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 147 bits (372), Expect = 4e-40
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 110 ELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVS 169
E+Y N + + ++AHE+AHQWFG+ T WW+ WL ES AT Y +
Sbjct: 242 EIYMDIAEN-SAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMD 300
Query: 170 WVEPTWRMEDLFVVEQVQVAFNSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
+ P W F V + A SD LK +H + + PD IS+ FD I Y KG S
Sbjct: 301 TLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGAS 356
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 146 bits (371), Expect = 6e-40
Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 110 ELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVS 169
E L D ++A+ L ++AHELAHQWFGN T WW+ WL E A E V+
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVN 405
Query: 170 WVEPTWRMEDLFVVEQVQVAFNSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
P + +D F+ D L S ++ TP I E FD + YNKG
Sbjct: 406 ATYPELQFDDYFLNV-CFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGAC 460
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 146 bits (371), Expect = 6e-40
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 110 ELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVS 169
E L D+ +++A+ L VAHELAHQWFGN T WW+ WL E A E+ VS
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 343
Query: 170 WVEPTWRMEDLFVVEQVQVAFNSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
P ++ D F + A D L SH +++ P I E FD + Y+KG
Sbjct: 344 VTHPELKVGDYFFGK-CFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGAC 398
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 102 bits (257), Expect = 8e-25
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 128 NFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQ 187
++AH+++H W GN T W + WL E E ++ + + +
Sbjct: 295 LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGE 354
Query: 188 VAFNSD-LKGSHAMTSETTTPDSI--SETFDHIIYNKGQS 224
+ + +H T I + + Y KG +
Sbjct: 355 LQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFA 394
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 100 bits (251), Expect = 5e-24
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 127 ENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQV 186
N ++AHELAH W GN T W++ WL E E ++ + ++
Sbjct: 294 SNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWS 353
Query: 187 QVAFNSD-LKGSHAMTS---ETTTPDSISETFDHIIYNKGQS 224
+ + D +K ++ + F + Y KG +
Sbjct: 354 DLQNSIDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFN 395
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 89.8 bits (223), Expect = 2e-20
Identities = 30/124 (24%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 122 AAGLLENFGL-----------------VAHELAHQWFGNYATPSWWSYAWLKESVATLFE 164
G +EN L +AHELAH W GN T W WL E + E
Sbjct: 271 PFGGMENPRLSFITPTVVAGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVE 330
Query: 165 YYVVSWVEPTWRMEDLFVV---EQVQVAFNSD-LKGSHAMTSETTTPDSISETFDHIIYN 220
++ V T R + + D + + PD + F + Y
Sbjct: 331 NRIMEAVFGTDRAVMEQALGAQDLNAEILELDASDTQLYIDLKGRDPD---DAFSGVPYV 387
Query: 221 KGQS 224
KGQ
Sbjct: 388 KGQL 391
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 81.9 bits (202), Expect = 1e-17
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 3/112 (2%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
LADS T +V HE H W GN T W LKE + +
Sbjct: 273 LADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRAS 332
Query: 174 TWRMEDLFVVEQVQVAFNSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
+ Q F D +H + + + ++ + +Y KG
Sbjct: 333 RAVRRIENIRLLRQHQFPEDAGPTAHPV--RPASYEEMNNFYTMTVYEKGAE 382
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 78.4 bits (193), Expect = 2e-16
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 1/115 (0%)
Query: 110 ELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVS 169
LA + +V HE HQ+ GN T W LKE + E
Sbjct: 277 ANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSE 336
Query: 170 WVEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
+ T V V F D + + S+ + +Y+KG
Sbjct: 337 EMTKTVTTRLSHVDLLRSVQFLED-SSPLSHPIRPESYVSMENFYTTTVYDKGSE 390
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 73.4 bits (180), Expect = 7e-15
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 1/111 (0%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
LA ++ T L+ ++ HE H W GN T W LKE + + S +
Sbjct: 298 LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGS 357
Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
V + F ++ A ++ + +Y KG
Sbjct: 358 RAVNRINNVRTMRGLQF-AEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAE 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.059
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 29/127 (22%)
Query: 146 TPSWWSYAWLKE--------------------SVATL---FEYYVVSWVEPTWRMEDLFV 182
T S++ + L+E + A L F YV S VEP+ + V
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 183 VEQVQVAFNSD-LKGS--HAMTSE-TTTPDSISETFDHII--YNKGQSPAHVEISHCPQR 236
+ F + L+G+ HA+ ++ D+ +I Y + A
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 237 VCLESAD 243
+
Sbjct: 144 ALFRAVG 150
Score = 31.9 bits (72), Expect = 0.28
Identities = 45/289 (15%), Positives = 85/289 (29%), Gaps = 116/289 (40%)
Query: 33 FKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYY-----------RFKWEKV-------- 73
F I ++I V+ +P + + F + +R Y + K EK+
Sbjct: 1659 FSI---LDI-VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 74 -----ESCEQNISRT--ASPLFILPLSMSL--VL----FLPPVSML------------CS 108
S + +S T P + + + L +P +
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPA-LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 109 SELYGLADSNRTTAA-GLLENFGLVAHELAHQWFGNYA-TPSWWSYAWLKESVATLFEYY 166
+++ + G+ + EL +G A P VA F
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG---------RVAASFS-- 1822
Query: 167 VVSWVEPTWRMEDL-FVVEQ--------VQVA-FNS---------DLKGSHAMTSETTTP 207
E L +VVE+ V++ +N DL+ A+
Sbjct: 1823 ----------QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR---AL------- 1862
Query: 208 DSISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLY 256
D+++ + I K Q ++I + + LE V L+
Sbjct: 1863 DTVTNVLNFI---KLQK---IDIIELQKSLSLEE---------VEGHLF 1896
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 31.9 bits (71), Expect = 0.27
Identities = 15/139 (10%), Positives = 38/139 (27%), Gaps = 14/139 (10%)
Query: 87 LFILPLSMSLV--LFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFG-- 142
F+ + + L + L S ++ L HE H W
Sbjct: 224 TFLTMVVGNGFGGLEHRNSTALLCSRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKT 283
Query: 143 ---------NYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSD 193
S+ W E + + F+ Y++ + + ++
Sbjct: 284 LKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSG-IIDEKRYLKLLGDTLSRVER 342
Query: 194 LKGSHAMTSETTTPDSISE 212
G + + ++ + ++
Sbjct: 343 GAGQYQQSVTESSFLAWTK 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.29
Identities = 17/168 (10%), Positives = 44/168 (26%), Gaps = 44/168 (26%)
Query: 152 YAWLKESVAT-------LFEYYVVSWVEPTWRMEDLFV---------VEQVQVAFNSDLK 195
Y +L + T + Y + + + +F +++ A
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 196 GS----HAM--------TSETTTPDSISETFDHIIY--NKGQSPAHVEISHCPQRVCLE- 240
+ + + D I+ N + + Q++ +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 241 ----------SADPPLVICLVTDKL-YLRHEWGLVEVKIPIRDVPQDP 277
S++ L I + +L L + + +V Q+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNA 256
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding,
P binding; 2.20A {Mus musculus}
Length = 140
Score = 30.1 bits (67), Expect = 0.46
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 20 IQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQN 79
++ L V ++ + EI + G P ++ V + ++ Y R K ++E+ E
Sbjct: 81 LESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDV--DRMLTDLAHYCRMKLMEIEALEAG 138
Query: 80 I 80
+
Sbjct: 139 V 139
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
monooxygenase; 1.70A {Methylococcus capsulatus str}
SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A
1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A
1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Length = 512
Score = 30.8 bits (69), Expect = 0.51
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWW-SYAWLKESVATLFEYYVVSWVE 172
D R A G + + ++ ++W + + LFEY VE
Sbjct: 226 ETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVE 285
Query: 173 PTWRMEDLFVVEQVQVAFNSDLK 195
P + D +V E + L
Sbjct: 286 PWVKTWDRWVYEDWGGIWIGRLG 308
>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET:
FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus
thermophilus}
Length = 791
Score = 26.7 bits (59), Expect = 9.9
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 89 ILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGL---VAHELAHQWFGNYA 145
P + LF V++ A L + L +H + H +
Sbjct: 556 FWPFYSAATLFAFFVAVAALPVPNVWMWVFLALFAYGLVRWALEDEYSHPVEHHTVTGKS 615
Query: 146 TPSWWSYAWLKESVATLFEYYVVSWV 171
+W AW S LF + ++
Sbjct: 616 -NAWMGMAWFIVSEVGLFAILIAGYL 640
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.432
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,336,864
Number of extensions: 241464
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 18
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)