RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5110
         (284 letters)



>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 3/136 (2%)

Query: 91  PLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWW 150
                 +L LPP       E   L     T  AG      ++AH+++H W GN  T   W
Sbjct: 44  VWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHQISHSWTGNLVTNKTW 103

Query: 151 SYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGS---HAMTSETTTP 207
            + WL E      E ++   +          +    ++  +    G            T 
Sbjct: 104 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 163

Query: 208 DSISETFDHIIYNKGQ 223
                 +  + Y KG 
Sbjct: 164 IDPDVAYSSVPYEKGF 179


>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus
          subtilis [TaxId: 1423]}
          Length = 324

 Score = 29.7 bits (66), Expect = 0.33
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 8  KPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPD 48
          K  +IV   G     +E++L++V      K +   V+G+ +
Sbjct: 16 KDVKIVFPEGL----DERILEAVSKLAGNKVLNPIVIGNEN 52


>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368
          {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 103

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 11 RIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVL 44
           I   NG P         +++   +G+ + I+  
Sbjct: 25 VIESINGMPTSNLTTYSAALKTISVGEVINITTD 58


>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 88

 Score = 25.6 bits (56), Expect = 2.9
 Identities = 5/34 (14%), Positives = 14/34 (41%)

Query: 11 RIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVL 44
           +   +  PI   + ++ +V+    G  V ++  
Sbjct: 39 VVTKVDDRPINSADALVAAVRSKAPGATVALTFQ 72


>d1pk6b_ b.22.1.1 (B:) Complement c1q globular head, B chain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 25.4 bits (55), Expect = 4.9
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 6/36 (16%)

Query: 187 QVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
           ++AF++    +  +  + T        FDH+I N  
Sbjct: 3   KIAFSATRTINVPLRRDQTI------RFDHVITNMN 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,095,319
Number of extensions: 49115
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 7
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)