RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5111
(132 letters)
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 89.5 bits (222), Expect = 5e-22
Identities = 26/60 (43%), Positives = 31/60 (51%)
Query: 72 REKFLLTSKHQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGT 131
RE LL + +D T V+ HE HQWFG+LVT WN WLNE FA+ E
Sbjct: 345 RETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAV 404
Score = 88.7 bits (220), Expect = 8e-22
Identities = 26/63 (41%), Positives = 31/63 (49%)
Query: 1 EKFLLTSKGQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTR 60
E LL + +D T V+ HE HQWFG+LVT WN WLNE FA+ E
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVN 405
Query: 61 MLY 63
Y
Sbjct: 406 ATY 408
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 88.7 bits (220), Expect = 8e-22
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 72 REKFLLTSKHQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGT 131
RE LL + + + T V HE HQWFG+LVT WN WLNE FA+ E+
Sbjct: 283 RESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSV 342
Score = 87.9 bits (218), Expect = 1e-21
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 1 EKFLLTSKGQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTR 60
E LL + + + T V HE HQWFG+LVT WN WLNE FA+ E+
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 343
Query: 61 MLY 63
+ +
Sbjct: 344 VTH 346
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 85.5 bits (212), Expect = 1e-20
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 72 REKFLLTSKHQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGT 131
RE ++ +++ + + +V+ HE HQWFGDLVT WN WLNE+FA Y
Sbjct: 241 REIYMDIAENS-AVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTM 299
Score = 83.2 bits (206), Expect = 6e-20
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 12 TTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTRMLY 63
+ + +V+ HE HQWFGDLVT WN WLNE+FA Y L+
Sbjct: 252 AVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLF 303
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 71.7 bits (176), Expect = 8e-16
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 17 QRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTRMLYVQE 66
+ +++ HE H W G+LVT SW WLNE F E ++ +
Sbjct: 292 KSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTD 341
Score = 69.0 bits (169), Expect = 6e-15
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 89 QRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGT 131
+ +++ HE H W G+LVT SW WLNE F E
Sbjct: 292 KSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIM 334
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 71.4 bits (175), Expect = 1e-15
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 17 QRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTRMLY 63
+ ++V+ H+ +H W G+LVT +W+ WLNE E L+
Sbjct: 293 KSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLF 339
Score = 68.7 bits (168), Expect = 7e-15
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 89 QRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGT 131
+ ++V+ H+ +H W G+LVT +W+ WLNE E
Sbjct: 293 KSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHIC 335
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 71.0 bits (174), Expect = 1e-15
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 17 QRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTRMLY 63
+ V+ HE H W G+LVT SWN WLNE + E ++
Sbjct: 293 RSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIH 339
Score = 68.3 bits (167), Expect = 1e-14
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 89 QRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGT 131
+ V+ HE H W G+LVT SWN WLNE + E
Sbjct: 293 RSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRII 335
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 62.2 bits (151), Expect = 1e-12
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 71 IREKFLLTSKHQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFG 130
LL SK + R +VV HE+ HQ+ G+ VT W L E E
Sbjct: 275 FNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLF 334
Query: 131 T 131
+
Sbjct: 335 S 335
Score = 59.5 bits (144), Expect = 1e-11
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 1 EKFLLTSKGQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEYFGTR 60
LL SK + R +VV HE+ HQ+ G+ VT W L E E +
Sbjct: 277 ANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSE 336
Query: 61 MLYVQEIPTPIREKFLLTSKHQCTTADFQRATSVVTHE 98
+ R + + D + + E
Sbjct: 337 EMTKTVTT---RLSHVDLLRSVQFLEDSSPLSHPIRPE 371
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 61.1 bits (148), Expect = 4e-12
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 43 FAWLNEAFARLFEYFGTRMLYVQEIP---------TPIREKFLLTSKHQCTTADFQRATS 93
W E F ++ ++ V K++L T D+
Sbjct: 255 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 314
Query: 94 VVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEY 128
V+ HE+ H W G+ VT W L E +
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQ 349
Score = 58.4 bits (141), Expect = 4e-11
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 1 EKFLLTSKGQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEY 56
K++L T D+ V+ HE+ H W G+ VT W L E +
Sbjct: 294 SKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQ 349
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 58.4 bits (141), Expect = 3e-11
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 71 IREKFLLTSKHQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEY 128
KF+L T DF+ SVV HE+ H W G+ VT W L E +
Sbjct: 267 FNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQ 324
Score = 54.9 bits (132), Expect = 5e-10
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 1 EKFLLTSKGQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLFEY 56
KF+L T DF+ SVV HE+ H W G+ VT W L E +
Sbjct: 269 TKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQ 324
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 27.7 bits (60), Expect = 1.3
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 14/70 (20%)
Query: 12 TTADFQRATSVVTHEFTHQWFG-----------DLVTPASWNFAWLNEAFARLFEYFGTR 60
++Q S+ HE+ H W L + W E YF
Sbjct: 260 MNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMT---SYFDDY 316
Query: 61 MLYVQEIPTP 70
+L+ I
Sbjct: 317 LLHTSGIIDE 326
Score = 26.1 bits (56), Expect = 4.3
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 73 EKFLLTSKHQCTTADFQRATSVVTHEFTHQWFG-----------DLVTPASWNFAWLNEA 121
K L+++ ++Q S+ HE+ H W L + W E
Sbjct: 249 RKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEG 308
Query: 122 FARLFEY 128
F+
Sbjct: 309 MTSYFDD 315
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A
{Sulfolobus tokodaii}
Length = 156
Score = 26.8 bits (60), Expect = 1.5
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 17/73 (23%)
Query: 61 MLYVQEIPTPIREKFLLTSKHQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNE 120
M+ +P + + + + F D +S + + +
Sbjct: 1 MIVYGLYKSPFGPITV--------AKNEKGFVML--------DFCDCAERSSLDNDYFTD 44
Query: 121 AFARLFEYF-GTR 132
F +L YF G +
Sbjct: 45 FFYKLDLYFEGKK 57
Score = 26.0 bits (58), Expect = 3.7
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 31 WFGDLVTPASWNFAWLNEAFARLFEYF-GTR 60
F D +S + + + F +L YF G +
Sbjct: 27 DFCDCAERSSLDNDYFTDFFYKLDLYFEGKK 57
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 25.4 bits (55), Expect = 5.6
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 4 LLTSKGQCTTADFQRATSVVTHEFTHQWFGDLVTPASWNFAWLNEAFARLF 54
LL KG ++ +R HE +V AW + AF +
Sbjct: 35 LLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAK-----AWTDPAFKQRL 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.134 0.451
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,094,247
Number of extensions: 105977
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 33
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)