Query psy5112
Match_columns 184
No_of_seqs 106 out of 393
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00295 B41 Band 4.1 homolo 100.0 1.8E-27 4E-32 189.9 13.8 136 16-184 2-138 (207)
2 KOG3530|consensus 99.9 9.7E-23 2.1E-27 182.6 10.9 136 14-184 7-143 (616)
3 KOG0248|consensus 99.8 6.9E-22 1.5E-26 179.2 3.2 124 1-183 610-734 (936)
4 KOG4261|consensus 99.8 1.5E-20 3.1E-25 172.3 -1.0 157 17-184 84-250 (1003)
5 KOG0792|consensus 99.8 4.1E-18 8.8E-23 160.7 10.9 137 16-184 21-157 (1144)
6 PF09379 FERM_N: FERM N-termin 99.5 7.6E-14 1.6E-18 96.4 7.1 79 22-133 1-80 (80)
7 cd01787 GRB7_RA RA (RAS-associ 99.5 2E-13 4.4E-18 95.5 8.1 84 17-130 2-85 (85)
8 KOG3527|consensus 99.5 1.4E-13 2.9E-18 128.3 8.1 133 16-184 30-163 (975)
9 KOG3529|consensus 99.4 9.3E-14 2E-18 127.6 5.2 135 15-184 11-147 (596)
10 KOG3552|consensus 99.4 2.1E-13 4.5E-18 127.7 2.5 134 16-179 182-321 (1298)
11 PF00373 FERM_M: FERM central 99.3 1.2E-12 2.6E-17 96.8 5.3 48 137-184 3-50 (126)
12 smart00314 RA Ras association 99.0 6E-09 1.3E-13 73.5 9.4 85 17-130 2-89 (90)
13 PF00788 RA: Ras association ( 99.0 5.4E-09 1.2E-13 73.4 8.6 84 17-130 2-91 (93)
14 cd01768 RA RA (Ras-associating 98.9 8.8E-09 1.9E-13 72.2 8.3 62 19-82 1-65 (87)
15 KOG3784|consensus 98.6 2E-07 4.2E-12 81.4 9.0 138 17-179 107-246 (407)
16 cd01777 SNX27_RA Ubiquitin dom 98.5 2.2E-07 4.7E-12 65.3 5.9 64 17-82 1-64 (87)
17 KOG3751|consensus 98.5 2.9E-07 6.4E-12 82.8 6.0 87 15-131 186-272 (622)
18 KOG3531|consensus 98.3 2.6E-06 5.6E-11 80.2 8.2 133 16-183 38-171 (1036)
19 cd01778 RASSF1_RA Ubiquitin-li 97.7 0.00023 5E-09 51.0 7.3 65 17-82 6-71 (96)
20 cd01776 Rin1_RA Ubiquitin doma 97.3 0.0007 1.5E-08 47.1 5.9 57 20-81 2-62 (87)
21 cd01775 CYR1_RA Ubiquitin doma 97.3 0.0014 3.1E-08 47.0 7.6 61 17-82 2-62 (97)
22 cd01784 rasfadin_RA Ubiquitin- 97.3 0.00064 1.4E-08 47.8 5.7 58 21-81 5-63 (87)
23 cd01760 RBD Ubiquitin-like dom 97.2 0.0006 1.3E-08 46.5 4.2 45 20-67 2-46 (72)
24 cd01783 DAGK_delta_RA Ubiquiti 97.1 0.004 8.6E-08 44.8 7.5 57 26-82 15-71 (97)
25 cd01785 PDZ_GEF_RA Ubiquitin-l 97.0 0.005 1.1E-07 42.5 7.4 51 17-68 2-52 (85)
26 KOG4371|consensus 96.9 0.00066 1.4E-08 65.8 3.4 136 20-182 40-177 (1332)
27 cd01782 AF6_RA_repeat1 Ubiquit 96.9 0.0063 1.4E-07 44.5 7.7 62 19-82 23-90 (112)
28 PF02196 RBD: Raf-like Ras-bin 96.9 0.0071 1.5E-07 41.0 7.1 44 19-65 2-45 (71)
29 cd01817 RGS12_RBD Ubiquitin do 96.8 0.0026 5.7E-08 43.4 4.7 44 20-66 2-45 (73)
30 smart00455 RBD Raf-like Ras-bi 96.8 0.0032 6.9E-08 42.6 5.0 44 20-66 2-45 (70)
31 KOG1574|consensus 96.7 0.005 1.1E-07 53.8 6.5 72 16-109 4-75 (375)
32 KOG4257|consensus 96.7 0.00074 1.6E-08 63.1 1.4 149 19-183 4-155 (974)
33 cd01781 AF6_RA_repeat2 Ubiquit 96.6 0.015 3.3E-07 42.1 7.6 58 25-82 13-78 (100)
34 PF14847 Ras_bdg_2: Ras-bindin 96.5 0.0088 1.9E-07 43.7 6.2 50 18-68 1-50 (105)
35 KOG4229|consensus 96.1 0.0033 7.1E-08 61.9 2.5 134 14-176 607-741 (1062)
36 cd00196 UBQ Ubiquitin-like pro 95.9 0.02 4.3E-07 34.8 4.7 44 21-67 1-44 (69)
37 KOG2378|consensus 95.8 0.031 6.6E-07 50.4 7.1 59 6-68 224-282 (573)
38 cd01779 Myosin_IXb_RA ubitquit 95.8 0.049 1.1E-06 39.0 6.7 79 29-129 26-104 (105)
39 PF11543 UN_NPL4: Nuclear pore 95.5 0.023 5E-07 39.4 4.2 47 17-67 4-50 (80)
40 PF00789 UBX: UBX domain; Int 95.3 0.093 2E-06 35.8 6.7 51 16-68 5-55 (82)
41 cd01807 GDX_N ubiquitin-like d 95.3 0.061 1.3E-06 36.2 5.6 45 18-65 1-45 (74)
42 cd01818 TIAM1_RBD Ubiquitin do 95.1 0.047 1E-06 37.5 4.4 35 21-55 3-37 (77)
43 cd01804 midnolin_N Ubiquitin-l 94.9 0.093 2E-06 35.8 5.7 39 17-55 1-39 (78)
44 cd01794 DC_UbP_C dendritic cel 94.9 0.061 1.3E-06 36.1 4.5 43 20-65 1-43 (70)
45 cd01792 ISG15_repeat1 ISG15 ub 94.9 0.094 2E-06 35.9 5.6 45 16-63 1-45 (80)
46 cd01809 Scythe_N Ubiquitin-lik 94.8 0.11 2.3E-06 34.3 5.6 45 18-65 1-45 (72)
47 cd01763 Sumo Small ubiquitin-r 94.8 0.1 2.2E-06 36.4 5.6 47 15-64 9-55 (87)
48 PTZ00044 ubiquitin; Provisiona 94.6 0.12 2.6E-06 34.6 5.5 44 18-64 1-44 (76)
49 cd01806 Nedd8 Nebb8-like ubiq 94.4 0.13 2.9E-06 34.1 5.5 44 18-64 1-44 (76)
50 PF11976 Rad60-SLD: Ubiquitin- 94.4 0.16 3.4E-06 33.7 5.7 46 18-65 1-46 (72)
51 KOG4239|consensus 94.4 0.071 1.5E-06 45.8 4.8 50 18-68 204-253 (348)
52 cd06409 PB1_MUG70 The MUG70 pr 94.2 0.4 8.8E-06 33.7 7.6 49 19-67 2-51 (86)
53 cd01802 AN1_N ubiquitin-like d 94.1 0.18 3.9E-06 36.5 5.9 49 14-65 24-72 (103)
54 cd01803 Ubiquitin Ubiquitin. U 93.7 0.22 4.7E-06 33.1 5.3 44 18-64 1-44 (76)
55 smart00213 UBQ Ubiquitin homol 93.7 0.24 5.1E-06 31.4 5.3 44 18-65 1-44 (64)
56 cd01805 RAD23_N Ubiquitin-like 93.6 0.24 5.2E-06 33.2 5.4 36 18-53 1-36 (77)
57 cd01798 parkin_N amino-termina 93.4 0.2 4.3E-06 33.2 4.7 43 20-65 1-43 (70)
58 smart00666 PB1 PB1 domain. Pho 93.2 0.72 1.6E-05 31.2 7.4 47 17-67 1-47 (81)
59 PF11470 TUG-UBL1: GLUT4 regul 93.1 0.19 4.1E-06 33.5 4.1 41 22-65 1-41 (65)
60 cd01796 DDI1_N DNA damage indu 92.8 0.31 6.6E-06 32.6 5.0 43 20-65 1-44 (71)
61 cd01767 UBX UBX (ubiquitin reg 92.7 0.54 1.2E-05 31.8 6.1 47 18-68 3-49 (77)
62 smart00166 UBX Domain present 92.5 0.71 1.5E-05 31.5 6.5 49 17-68 4-52 (80)
63 PF02824 TGS: TGS domain; Int 92.3 0.18 4E-06 32.8 3.2 33 20-54 1-33 (60)
64 cd01772 SAKS1_UBX SAKS1-like U 92.1 0.65 1.4E-05 31.8 5.9 47 18-68 5-51 (79)
65 cd01810 ISG15_repeat2 ISG15 ub 92.0 0.35 7.6E-06 32.4 4.5 43 20-65 1-43 (74)
66 cd01790 Herp_N Homocysteine-re 92.0 0.46 1E-05 32.9 5.1 36 17-52 1-38 (79)
67 cd06407 PB1_NLP A PB1 domain i 91.7 1.4 3E-05 30.7 7.3 47 18-67 1-47 (82)
68 cd01812 BAG1_N Ubiquitin-like 91.7 0.56 1.2E-05 30.7 5.2 44 18-65 1-44 (71)
69 cd01770 p47_UBX p47-like ubiqu 91.4 1.1 2.3E-05 30.8 6.5 49 18-68 5-53 (79)
70 cd00153 RalGDS_RA Ubiquitin do 90.7 2.7 5.9E-05 29.5 7.8 50 19-68 4-57 (87)
71 cd01786 STE50_RA Ubiquitin-lik 90.7 1.6 3.4E-05 31.2 6.7 52 28-82 25-76 (98)
72 cd06406 PB1_P67 A PB1 domain i 90.2 1 2.3E-05 31.3 5.4 36 17-54 2-37 (80)
73 PF00240 ubiquitin: Ubiquitin 90.0 0.71 1.5E-05 30.1 4.4 39 24-65 2-40 (69)
74 cd01808 hPLIC_N Ubiquitin-like 89.8 0.99 2.1E-05 29.9 5.0 42 19-64 2-43 (71)
75 KOG1892|consensus 89.8 0.72 1.6E-05 45.4 5.8 60 18-82 41-108 (1629)
76 cd06408 PB1_NoxR The PB1 domai 89.1 2.8 6.2E-05 29.5 7.0 46 17-67 2-47 (86)
77 KOG4371|consensus 88.7 0.59 1.3E-05 46.2 4.4 77 102-184 573-652 (1332)
78 PF13881 Rad60-SLD_2: Ubiquiti 88.6 1.3 2.8E-05 32.6 5.3 34 17-50 2-36 (111)
79 cd01816 Raf_RBD Ubiquitin doma 88.2 1.2 2.7E-05 30.4 4.5 45 20-67 2-46 (74)
80 cd01791 Ubl5 UBL5 ubiquitin-li 88.0 2 4.3E-05 29.0 5.5 38 18-55 2-39 (73)
81 cd01769 UBL Ubiquitin-like dom 87.0 1.5 3.2E-05 28.0 4.4 34 22-55 2-35 (69)
82 cd01774 Faf1_like2_UBX Faf1 ik 86.9 3 6.6E-05 29.0 6.1 48 17-68 4-51 (85)
83 KOG4335|consensus 85.5 0.016 3.5E-07 52.6 -7.5 145 16-183 240-388 (558)
84 cd05992 PB1 The PB1 domain is 84.7 6.1 0.00013 26.3 6.7 47 18-68 1-48 (81)
85 PF00564 PB1: PB1 domain; Int 84.2 9 0.00019 25.7 7.4 48 17-67 1-48 (84)
86 cd01771 Faf1_UBX Faf1 UBX doma 83.4 5.8 0.00013 27.3 6.1 47 18-68 5-51 (80)
87 PF13019 Telomere_Sde2: Telome 83.3 4.2 9.2E-05 31.9 6.0 48 18-67 1-52 (162)
88 cd01793 Fubi Fubi ubiquitin-li 83.0 4 8.6E-05 27.2 5.1 37 26-65 7-43 (74)
89 cd01797 NIRF_N amino-terminal 83.0 3.6 7.8E-05 28.0 5.0 45 18-65 1-47 (78)
90 cd01773 Faf1_like1_UBX Faf1 ik 82.9 5.4 0.00012 27.7 5.8 46 19-68 7-52 (82)
91 cd01813 UBP_N UBP ubiquitin pr 82.8 4.6 0.0001 27.2 5.4 36 19-55 2-37 (74)
92 cd01780 PLC_epsilon_RA Ubiquit 82.6 5.3 0.00011 28.5 5.7 45 24-68 9-53 (93)
93 PF00887 ACBP: Acyl CoA bindin 82.4 2.4 5.1E-05 29.4 3.9 36 149-184 5-42 (87)
94 cd01800 SF3a120_C Ubiquitin-li 81.8 2.9 6.3E-05 28.1 4.1 38 25-65 5-42 (76)
95 cd00435 ACBP Acyl CoA binding 81.2 2.9 6.3E-05 29.1 4.0 37 148-184 4-40 (85)
96 PF00794 PI3K_rbd: PI3-kinase 79.9 5.1 0.00011 28.7 5.1 61 15-81 14-79 (106)
97 KOG0005|consensus 78.3 5.5 0.00012 26.2 4.2 38 18-55 1-38 (70)
98 cd06398 PB1_Joka2 The PB1 doma 77.2 20 0.00044 25.3 7.3 48 18-68 1-53 (91)
99 KOG3727|consensus 75.8 1.3 2.9E-05 41.1 1.2 45 136-180 271-315 (664)
100 cd01799 Hoil1_N Ubiquitin-like 75.5 8.9 0.00019 25.9 5.0 33 23-55 8-40 (75)
101 PLN02560 enoyl-CoA reductase 74.6 12 0.00027 32.2 6.8 44 19-62 2-48 (308)
102 KOG1117|consensus 72.6 18 0.00039 35.7 7.8 69 14-83 923-994 (1186)
103 PF08817 YukD: WXG100 protein 71.8 11 0.00024 25.4 4.8 46 19-64 4-52 (79)
104 TIGR00601 rad23 UV excision re 71.6 8.4 0.00018 34.3 5.1 48 18-65 1-48 (378)
105 cd06410 PB1_UP2 Uncharacterize 69.3 27 0.00058 25.0 6.5 44 21-68 16-59 (97)
106 PF14533 USP7_C2: Ubiquitin-sp 66.8 18 0.00039 29.3 5.8 50 18-67 19-73 (213)
107 KOG1769|consensus 64.7 29 0.00062 25.1 5.8 41 15-55 18-58 (99)
108 KOG4261|consensus 64.4 17 0.00037 35.4 5.8 50 18-68 4-53 (1003)
109 KOG3542|consensus 61.1 6.4 0.00014 37.9 2.4 51 17-68 758-808 (1283)
110 cd01814 NTGP5 Ubiquitin-like N 59.8 9.4 0.0002 28.2 2.6 37 16-52 3-40 (113)
111 PTZ00458 acyl CoA binding prot 57.8 21 0.00045 25.2 4.1 36 149-184 5-42 (90)
112 KOG4335|consensus 54.8 6.1 0.00013 36.4 1.1 62 122-184 197-264 (558)
113 cd02639 R3H_RRM R3H domain of 54.8 21 0.00046 23.3 3.4 30 26-55 14-45 (60)
114 PF08825 E2_bind: E2 binding d 54.5 20 0.00044 24.9 3.5 37 32-68 1-41 (84)
115 KOG2689|consensus 51.2 30 0.00066 29.5 4.6 50 16-68 209-258 (290)
116 cd01668 TGS_RelA_SpoT TGS_RelA 51.2 22 0.00047 21.9 3.1 26 21-48 2-27 (60)
117 cd05479 RP_DDI RP_DDI; retrope 50.5 14 0.00029 27.2 2.3 39 16-55 15-53 (124)
118 cd01612 APG12_C Ubiquitin-like 50.0 48 0.001 23.1 4.9 37 29-67 17-53 (87)
119 cd06404 PB1_aPKC PB1 domain is 49.7 86 0.0019 21.9 6.0 46 20-68 3-48 (83)
120 TIGR02281 clan_AA_DTGA clan AA 49.2 20 0.00044 26.3 3.0 52 7-63 4-55 (121)
121 COG4895 Uncharacterized conser 47.0 7.5 0.00016 25.1 0.3 24 4-30 34-57 (63)
122 PHA01083 hypothetical protein 45.1 24 0.00053 27.3 2.9 25 150-174 30-55 (149)
123 cd01611 GABARAP Ubiquitin doma 45.0 68 0.0015 23.5 5.2 36 29-66 42-77 (112)
124 smart00144 PI3K_rbd PI3-kinase 44.6 86 0.0019 22.5 5.7 37 15-51 15-52 (108)
125 cd06395 PB1_Map2k5 PB1 domain 43.9 31 0.00068 24.1 3.0 46 18-66 1-48 (91)
126 cd06396 PB1_NBR1 The PB1 domai 40.3 64 0.0014 22.4 4.2 43 19-67 2-47 (81)
127 PF12436 USP7_ICP0_bdg: ICP0-b 40.2 70 0.0015 26.5 5.2 56 11-68 62-123 (249)
128 PF14039 YusW: YusW-like prote 37.3 40 0.00086 23.9 2.9 32 31-63 55-86 (92)
129 PRK08364 sulfur carrier protei 36.9 57 0.0012 21.4 3.5 30 20-54 5-36 (70)
130 PTZ00380 microtubule-associate 36.3 67 0.0015 24.0 4.0 35 30-67 42-77 (121)
131 KOG2086|consensus 35.9 1E+02 0.0023 27.5 5.8 48 19-68 307-354 (380)
132 PRK05783 hypothetical protein; 35.5 76 0.0016 22.1 4.0 36 27-62 41-78 (84)
133 PF13650 Asp_protease_2: Aspar 35.5 26 0.00056 23.1 1.6 30 26-55 6-35 (90)
134 PLN02799 Molybdopterin synthas 35.4 96 0.0021 20.7 4.5 25 27-51 18-42 (82)
135 PRK06437 hypothetical protein; 34.0 65 0.0014 21.1 3.3 32 26-64 9-40 (67)
136 PF02991 Atg8: Autophagy prote 33.7 82 0.0018 22.8 4.1 34 30-65 35-68 (104)
137 PF06755 DUF1219: Protein of u 33.4 26 0.00056 25.8 1.4 41 28-68 47-87 (114)
138 PF07358 DUF1482: Protein of u 33.4 1.3E+02 0.0028 19.5 4.5 34 17-50 3-36 (57)
139 COG5227 SMT3 Ubiquitin-like pr 33.0 1.2E+02 0.0026 21.7 4.6 38 17-54 24-61 (103)
140 PF13975 gag-asp_proteas: gag- 32.9 38 0.00083 22.3 2.1 31 25-55 15-45 (72)
141 PF12859 Apc1: Anaphase-promot 32.8 87 0.0019 22.3 4.1 27 2-36 1-27 (105)
142 PF14560 Ubiquitin_2: Ubiquiti 32.5 1.6E+02 0.0034 19.9 7.0 46 18-66 2-49 (87)
143 PF02700 PurS: Phosphoribosylf 32.2 88 0.0019 21.4 3.9 36 27-63 39-76 (80)
144 PF14009 DUF4228: Domain of un 31.3 72 0.0016 24.1 3.7 30 15-46 13-42 (181)
145 PLN02593 adrenodoxin-like ferr 29.5 97 0.0021 22.6 4.0 26 21-46 2-29 (117)
146 PF04110 APG12: Ubiquitin-like 29.5 2E+02 0.0044 20.1 5.7 37 29-67 17-53 (87)
147 COG4281 ACB Acyl-CoA-binding p 29.4 85 0.0018 21.7 3.3 38 146-183 3-40 (87)
148 cd00754 MoaD Ubiquitin domain 29.1 92 0.002 20.3 3.5 26 27-52 15-40 (80)
149 KOG4146|consensus 29.0 1.7E+02 0.0037 21.0 4.8 48 16-68 3-61 (101)
150 PF08428 Rib: Rib/alpha-like r 28.0 75 0.0016 20.7 2.8 19 16-34 41-59 (65)
151 PF05585 DUF1758: Putative pep 27.4 1.2E+02 0.0025 23.1 4.3 36 20-55 1-38 (164)
152 TIGR01687 moaD_arch MoaD famil 27.4 88 0.0019 21.1 3.3 24 28-52 16-39 (88)
153 TIGR02008 fdx_plant ferredoxin 26.8 1.8E+02 0.0039 20.2 4.8 26 20-45 5-30 (97)
154 cd02640 R3H_NRF R3H domain of 26.5 82 0.0018 20.4 2.7 29 26-54 14-44 (60)
155 PF14782 BBS2_C: Ciliary BBSom 26.3 1E+02 0.0022 28.0 4.2 35 21-55 261-295 (431)
156 PF15016 DUF4520: Domain of un 24.9 83 0.0018 22.0 2.7 22 17-38 48-69 (85)
157 KOG0011|consensus 24.3 1.2E+02 0.0026 26.7 4.0 37 18-54 1-37 (340)
158 cd06411 PB1_p51 The PB1 domain 24.0 2E+02 0.0043 19.8 4.4 33 29-62 8-40 (78)
159 PF13732 DUF4162: Domain of un 23.5 2.2E+02 0.0048 18.6 5.0 39 16-54 29-67 (84)
160 TIGR00302 phosphoribosylformyl 23.5 1.6E+02 0.0035 19.8 4.0 34 28-62 40-75 (80)
161 KOG3878|consensus 23.0 67 0.0015 28.4 2.3 25 160-184 50-74 (469)
162 TIGR03833 conserved hypothetic 23.0 91 0.002 20.5 2.4 25 3-30 32-56 (62)
163 KOG4248|consensus 22.9 1E+02 0.0022 31.2 3.8 36 19-54 4-39 (1143)
164 cd06007 R3H_DEXH_helicase R3H 22.6 1.1E+02 0.0024 19.7 2.8 30 26-55 13-44 (59)
165 PF02597 ThiS: ThiS family; I 22.4 1.2E+02 0.0026 19.5 3.1 24 29-52 13-36 (77)
166 cd01795 USP48_C USP ubiquitin- 22.0 1.4E+02 0.003 21.8 3.4 30 26-55 13-42 (107)
167 TIGR01682 moaD molybdopterin c 21.0 1.5E+02 0.0032 19.7 3.4 27 26-52 14-41 (80)
168 cd02641 R3H_Smubp-2_like R3H d 21.0 95 0.0021 20.0 2.2 27 28-54 16-44 (60)
169 cd05484 retropepsin_like_LTR_2 20.6 1.3E+02 0.0029 20.3 3.1 43 24-66 6-48 (91)
170 KOG1363|consensus 20.5 1.5E+02 0.0033 27.2 4.2 49 16-68 382-430 (460)
No 1
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.95 E-value=1.8e-27 Score=189.92 Aligned_cols=136 Identities=32% Similarity=0.406 Sum_probs=117.3
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
.|+.++|+++||+..++.+|++||++|+++.||+++||. ...+||||+....+ +...|+.+..+
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~--~~~~F~L~~~~~~~-~~~~~l~~~~~------------- 65 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR--ESEYFGLQFEDPDE-DLSHWLDPAKT------------- 65 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC--ccceeEEEEEcCCC-CcCeeCCCccC-------------
Confidence 589999999999999999999999999999999999998 78999999987621 22368877765
Q ss_pred eeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC-CCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHH
Q psy5112 96 VMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL-SKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAAL 174 (184)
Q Consensus 96 ~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~-~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl 174 (184)
++|...+| .+++|+||+|+|+++. ....|+.+..++|.|++++|++|++||+.++|++|||+
T Consensus 66 --l~~~~~~~---------------~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal 128 (207)
T smart00295 66 --LLDQDVKS---------------EPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAAL 128 (207)
T ss_pred --HHHhcCCC---------------CCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHH
Confidence 66654322 3589999999999874 34568888889999999999999999999999999999
Q ss_pred HHhHhhcCCC
Q psy5112 175 LSQVCFKQVG 184 (184)
Q Consensus 175 ~~Q~e~Gd~~ 184 (184)
++|+++||++
T Consensus 129 ~~q~~~gd~~ 138 (207)
T smart00295 129 ALQAEFGDYD 138 (207)
T ss_pred HHHHHhcCCC
Confidence 9999999985
No 2
>KOG3530|consensus
Probab=99.88 E-value=9.7e-23 Score=182.55 Aligned_cols=136 Identities=21% Similarity=0.272 Sum_probs=118.8
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE-EEeCCCCCCcccccCcchhhccccCCCcc
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL-FSDDPIDKNLEHYLEPELKVSQTKGKYPL 92 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL-~~~~~~~~~~~~~l~~~~k~~~~~~~~~~ 92 (184)
.+.-+.|+|.|+||+...+.+-..+.+.++++.||..|+|.|. ++||| |.+.. +..+||++..+
T Consensus 7 ~k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~--DYFGLry~D~~---~~~hWLD~tK~---------- 71 (616)
T KOG3530|consen 7 SKKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEK--DYFGLRYQDSS---KVRHWLDPTKS---------- 71 (616)
T ss_pred CCcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceeee--eccceeeechh---hcceecCcchh----------
Confidence 3456789999999999999999999999999999999999966 55999 66654 67789998876
Q ss_pred ceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHH
Q psy5112 93 KIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELA 172 (184)
Q Consensus 93 ~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LA 172 (184)
| . +.-+ ...++.|+||+|||..++....++.+++++|.|+++||+.||++|+.+.|++||
T Consensus 72 -----I----~------kqvK-----~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLa 131 (616)
T KOG3530|consen 72 -----I----K------KQVK-----IGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELA 131 (616)
T ss_pred -----H----H------HHhc-----cCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHH
Confidence 1 1 1111 234799999999999998889999999999999999999999999999999999
Q ss_pred HHHHhHhhcCCC
Q psy5112 173 ALLSQVCFKQVG 184 (184)
Q Consensus 173 Al~~Q~e~Gd~~ 184 (184)
|+.+|.|+||||
T Consensus 132 Al~lQsELGDYn 143 (616)
T KOG3530|consen 132 ALILQSELGDYN 143 (616)
T ss_pred HHHHHHHhcCCC
Confidence 999999999997
No 3
>KOG0248|consensus
Probab=99.84 E-value=6.9e-22 Score=179.18 Aligned_cols=124 Identities=37% Similarity=0.647 Sum_probs=113.0
Q ss_pred CceeeeeccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcc
Q psy5112 1 MEVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPE 80 (184)
Q Consensus 1 ~e~~~~~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~ 80 (184)
|||.|+|+|||+||+.|++|+|+|+||+++.|.+|.+.
T Consensus 610 mEv~S~LlRnp~hhslPfSIpVhf~Ng~YqvVgFDgsQ------------------------------------------ 647 (936)
T KOG0248|consen 610 LEVTSVLTRDVTRTKFPHSISVKLPNSEYQIVEFDGKQ------------------------------------------ 647 (936)
T ss_pred heehhhhhcCcccccCCcceeeeccCCeeEEEeecchH------------------------------------------
Confidence 89999999999999999999999999999999999981
Q ss_pred hhhccccCCCccceeeeeehhHHHHHHHHHHhCCCcccCCc-eeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcC
Q psy5112 81 LKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNR-CVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLG 159 (184)
Q Consensus 81 ~k~~~~~~~~~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~-~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G 159 (184)
+ |||+|++||+.++++.-|+ +... --.+++|+++|+-.....+++.++.|+|.|.-+.|+.|
T Consensus 648 -e---------------iCDaiSkWEqaske~qpGk-eg~~~v~~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~g 710 (936)
T KOG0248|consen 648 -K---------------LCDALSTWETRSRDAQRGR-VISDCAAALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNG 710 (936)
T ss_pred -H---------------HHHHHHHHHHhhhhhcCCc-chhHHHHHHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcC
Confidence 3 9999999999999988887 3433 34567788888888888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhhcCC
Q psy5112 160 RFPLTKELALELAALLSQVCFKQV 183 (184)
Q Consensus 160 ~~p~~~e~a~~LAAl~~Q~e~Gd~ 183 (184)
++|.+.+.+.++|||.+|.+|||-
T Consensus 711 r~p~~~~l~e~~AaL~aq~~~gd~ 734 (936)
T KOG0248|consen 711 RIPLSNQLCESLAALYAQMVFGDA 734 (936)
T ss_pred cCcchHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999985
No 4
>KOG4261|consensus
Probab=99.78 E-value=1.5e-20 Score=172.28 Aligned_cols=157 Identities=18% Similarity=0.295 Sum_probs=131.9
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCC----CCcc-----cccCcchhhcccc
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPID----KNLE-----HYLEPELKVSQTK 87 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~----~~~~-----~~l~~~~k~~~~~ 87 (184)
.--++|.++||..+++.+|.+.++.++..+||.++||+ |++.|+|..+.... +... ..++...||..++
T Consensus 84 ~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt--nyeeyslvre~~~~~~~~~tgtl~~~~~~m~~~~kme~Lk 161 (1003)
T KOG4261|consen 84 QRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT--NYEEYSLVREDIEEQNEEGTGTLNLKRKLMRKERKMEKLR 161 (1003)
T ss_pred cccceeeecccccceeeecccccHHHHHHHHHhccCcc--chhhhhhhHHHHHHhcCCCCceEEeehhHHHhhhhhHHHH
Confidence 45679999999999999999999999999999999999 99999996543321 1111 2335555788888
Q ss_pred CCCccceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC-CCCCChhhHHhHHHhhhhhhhcCCCCCCHH
Q psy5112 88 GKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL-SKKETDRERLLLCYQTNQQVVLGRFPLTKE 166 (184)
Q Consensus 88 ~~~~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~-~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e 166 (184)
+|. ..|.--+|....|..+.+.+ ..+|++++||+||+.+. +.+.||+..+|+|.|+++++++|.+|++.+
T Consensus 162 kkl-------~td~el~wld~~rtlreqgi--de~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~ 232 (1003)
T KOG4261|consen 162 KKL-------HTDDELNWLDHSRTLREQGI--DEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFE 232 (1003)
T ss_pred hhc-------ccchhhhhHHHhHHHHhcCc--cHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHH
Confidence 887 88888899887776555443 35799999999999765 589999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcCCC
Q psy5112 167 LALELAALLSQVCFKQVG 184 (184)
Q Consensus 167 ~a~~LAAl~~Q~e~Gd~~ 184 (184)
.|.++|++|+|++||+|+
T Consensus 233 kA~e~a~~qshiq~g~~~ 250 (1003)
T KOG4261|consen 233 KACEFAGFQSHIQFGPHN 250 (1003)
T ss_pred HHHHHhccccccccCCch
Confidence 999999999999999985
No 5
>KOG0792|consensus
Probab=99.75 E-value=4.1e-18 Score=160.70 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=115.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
..++++|.|+|+++.++.+.+..|..++++.+|++|+|+++ ..|+| ...+.+.+..+|++.+..
T Consensus 21 s~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~--~yFgl-~~~~~k~~~~rWvdleK~------------- 84 (1144)
T KOG0792|consen 21 SCVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELREK--EYFGL-LWSPDKPDQIRWVDLEKP------------- 84 (1144)
T ss_pred ceEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhccccc--ccccc-cccCCccCccceeccchh-------------
Confidence 38999999999999999999999999999999999999965 55662 222223466788877753
Q ss_pred eeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHHH
Q psy5112 96 VMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALL 175 (184)
Q Consensus 96 ~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~ 175 (184)
.+++... .+.++.++||++||+.++....++.++..+|.|++.||+.|+.||+.+.|+.||++.
T Consensus 85 -------------lkkql~k---~a~~p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~ya 148 (1144)
T KOG0792|consen 85 -------------LKKQLIK---VANPPLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYA 148 (1144)
T ss_pred -------------HHHhhhc---cCCCceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhh
Confidence 1122211 234789999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcCCC
Q psy5112 176 SQVCFKQVG 184 (184)
Q Consensus 176 ~Q~e~Gd~~ 184 (184)
.|++||||+
T Consensus 149 vQae~gdy~ 157 (1144)
T KOG0792|consen 149 VQAEFGDYN 157 (1144)
T ss_pred hhhhhcchh
Confidence 999999996
No 6
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=99.50 E-value=7.6e-14 Score=96.38 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=61.6
Q ss_pred EEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE-eCCCCCCcccccCcchhhccccCCCccceeeeeeh
Q psy5112 22 VHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS-DDPIDKNLEHYLEPELKVSQTKGKYPLKIYVMLCD 100 (184)
Q Consensus 22 V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~-~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~i~D 100 (184)
|+||||+..++.+|+++|++|+++.||++|||. ..++|||+. ... .+..+||+++.+ +.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~--e~~~FgL~~~~~~--~~~~~wL~~~k~---------------l~~ 61 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK--EKEYFGLQYQVDK--DGEHHWLDLDKK---------------LKK 61 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS--SGGGEEEEE-EBT--TSSEEEE-SSSB---------------GGG
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC--CccEEEEEEeecC--CCcceeccCccc---------------HHH
Confidence 799999999999999999999999999999999 678999988 333 255688888876 322
Q ss_pred hHHHHHHHHHHhCCCcccCCceeEEEEeeeeee
Q psy5112 101 VISKWETALREKGTGKFENNRCVQFIYKNRLYF 133 (184)
Q Consensus 101 ~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~ 133 (184)
.+. ....+++|+||+|+|+
T Consensus 62 q~~--------------~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 62 QLK--------------KNNPPFTLYFRVKFYP 80 (80)
T ss_dssp STB--------------TSSSSEEEEEEESS--
T ss_pred HcC--------------CCCCCEEEEEEEEECC
Confidence 211 1245899999999984
No 7
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=99.48 E-value=2e-13 Score=95.54 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=72.7
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccceee
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYV 96 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~ 96 (184)
+.+++|++.||+++++.||+..||+|+|+.++.|.++. +..+++|++..|. ...||.+.+.+.
T Consensus 2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~--~~~~W~LvE~~P~-l~lER~~EDHE~-------------- 64 (85)
T cd01787 2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ--DDSSWTLVEHLPH-LQLERLFEDHEL-------------- 64 (85)
T ss_pred ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC--CCCCeEEEEecch-hhhhhhccchHH--------------
Confidence 57899999999999999999999999999999999999 7799999999981 124899999997
Q ss_pred eeehhHHHHHHHHHHhCCCcccCCceeEEEEeee
Q psy5112 97 MLCDVISKWETALREKGTGKFENNRCVQFIYKNR 130 (184)
Q Consensus 97 ~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k 130 (184)
+.|+++.|.+. .+-+|+|||.
T Consensus 65 -vvdvl~~W~~~------------~~n~l~f~k~ 85 (85)
T cd01787 65 -VVEVLSTWHSA------------GNSVLFFRKN 85 (85)
T ss_pred -HHHHHHhcccC------------CCcEEEEecC
Confidence 99999999551 1357888873
No 8
>KOG3527|consensus
Probab=99.46 E-value=1.4e-13 Score=128.33 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=111.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE-EEeCCCCCCcccccCcchhhccccCCCccce
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL-FSDDPIDKNLEHYLEPELKVSQTKGKYPLKI 94 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL-~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~ 94 (184)
.+..++|.++||+...+.++....++++++.+|+.|+|-|++ +|+| |.... +...||++... ..|
T Consensus 30 k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEkd--yfgl~~~~~~---~~~~wlD~~k~----i~k----- 95 (975)
T KOG3527|consen 30 KDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEKD--YFGLTYLTSS---EQKNWLDPAKE----IKK----- 95 (975)
T ss_pred CCccceEEEeeCCcceeeeecccccchhHHHHhhccchhhhh--hceeEEecCC---CCccccccchh----hhc-----
Confidence 577899999999999999999999999999999999999764 5777 44443 44457765542 001
Q ss_pred eeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHH
Q psy5112 95 YVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAAL 174 (184)
Q Consensus 95 ~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl 174 (184)
.-.+.+|.|.|-.||+.+++.....+..++.+.+|++.||+.|++||+.-.-+-|+.+
T Consensus 96 ----------------------~vr~~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~allgsy 153 (975)
T KOG3527|consen 96 ----------------------QVRSFPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHALLGSY 153 (975)
T ss_pred ----------------------ccccCccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCccccchhhhhhhhhH
Confidence 1134689999999999988877777778999999999999999999999999999999
Q ss_pred HHhHhhcCCC
Q psy5112 175 LSQVCFKQVG 184 (184)
Q Consensus 175 ~~Q~e~Gd~~ 184 (184)
.+|.|.|||+
T Consensus 154 ~vq~E~gdYd 163 (975)
T KOG3527|consen 154 TVQSELGDYD 163 (975)
T ss_pred hHHhHhccCC
Confidence 9999999996
No 9
>KOG3529|consensus
Probab=99.43 E-value=9.3e-14 Score=127.56 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=113.3
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE-EEeCCCCCCcccccCcchhhccccCCCccc
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL-FSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL-~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
..++.++|+.+|..-. +.+++.+|++++...||..+||+|+ ..||| |.++. +...||..+.+
T Consensus 11 ~~~~~~rv~~~d~e~~-~~i~~~~t~~~l~dlv~~~~glre~--~yfgl~~~d~~---~~~~wl~~d~~----------- 73 (596)
T KOG3529|consen 11 TKPINVRVTTMDAELE-FAIQPKTTGKQLFDLVVKTIGLRES--WYFGLQYTDSK---GEPTWLKLDKK----------- 73 (596)
T ss_pred cCCcceeeeehhhhhh-hhhCcchhHHHHHHHHhccCCCchh--hhcccccccCC---CCcchhhccch-----------
Confidence 4689999999999998 9999999999999999999999955 66898 66665 66778876665
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCC-CCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHH
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLS-KKETDRERLLLCYQTNQQVVLGRFPLTKELALELA 172 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~-~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LA 172 (184)
++|- .. .+..+..|.|+.+||..+.. ...+..+..|+|.|++..|+.|..+|+.|..+.||
T Consensus 74 ----v~~~-----------d~---~k~~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~~la 135 (596)
T KOG3529|consen 74 ----VLDQ-----------DV---PKDSPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETSVLLA 135 (596)
T ss_pred ----hhhh-----------hc---CCCCCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Confidence 2221 11 12233799999999998764 56677779999999999999999999999999999
Q ss_pred HHHHhHhhcCCC
Q psy5112 173 ALLSQVCFKQVG 184 (184)
Q Consensus 173 Al~~Q~e~Gd~~ 184 (184)
|+++|+.+|||+
T Consensus 136 s~~vqa~~gdy~ 147 (596)
T KOG3529|consen 136 SYAVQAKYGDYD 147 (596)
T ss_pred HHHHHHHhcccc
Confidence 999999999985
No 10
>KOG3552|consensus
Probab=99.36 E-value=2.1e-13 Score=127.71 Aligned_cols=134 Identities=21% Similarity=0.259 Sum_probs=105.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC--CCCCcccccCcchhhccccCCCccc
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP--IDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~--~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
+|.+++||+.||+++.+.+|.+||++||+-++-+||-|. +.+.|||..+-- .+.+.-..|.+.+.
T Consensus 182 mPNVLKvyLENGQTKsFkfdatTtVkDVIltl~eKLsi~--~iE~FsL~LE~~~s~~rnkL~LLheqEs----------- 248 (1298)
T KOG3552|consen 182 MPNVLKVYLENGQTKSFKFDATTTVKDVILTLLEKLSIC--CIELFSLVLEHVKSLKRNKLTLLHEQES----------- 248 (1298)
T ss_pred chhHHHHHHhcCccceeeecccccHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhcccceeEeecHHHH-----------
Confidence 789999999999999999999999999999999999999 889999953221 11233334444432
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC--CCCCChhhHHhHHHhhhhhhhcCCCCCC--HHHHH
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL--SKKETDRERLLLCYQTNQQVVLGRFPLT--KELAL 169 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~--~~~~d~~e~~l~y~Q~~~~v~~G~~p~~--~e~a~ 169 (184)
|++- .++ +++...|++||.-|-..+. -...||+.+.++|.|.-+||...||... .+.|+
T Consensus 249 --------l~qV-----~~R----p~sHk~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elAL 311 (1298)
T KOG3552|consen 249 --------LAQV-----AAR----PGSHKLRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELAL 311 (1298)
T ss_pred --------HHHH-----HhC----CcccceeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHH
Confidence 1111 111 3456799999998766654 2478999999999999999999999975 69999
Q ss_pred HHHHHHHhHh
Q psy5112 170 ELAALLSQVC 179 (184)
Q Consensus 170 ~LAAl~~Q~e 179 (184)
+|||||+|..
T Consensus 312 RLAALhm~~~ 321 (1298)
T KOG3552|consen 312 RLAALHMHQH 321 (1298)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 11
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.34 E-value=1.2e-12 Score=96.83 Aligned_cols=48 Identities=31% Similarity=0.397 Sum_probs=44.6
Q ss_pred CCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 137 SKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 137 ~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
....|+++++++|.|++++|+.|+|||+.++|++|||+++|+++||++
T Consensus 3 ~~~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~ 50 (126)
T PF00373_consen 3 LHIDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYN 50 (126)
T ss_dssp GGTTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSST
T ss_pred cccCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 347899999999999999999999999999999999999999999985
No 12
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=98.97 E-value=6e-09 Score=73.54 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=70.7
Q ss_pred CeEEEEEEec---CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccc
Q psy5112 17 PHSIPVHLLN---GAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 17 pi~~~V~llD---g~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
..+++|+.-| ++++++.|++.||++|+++.+.+|.||.+ +...|+|++... .+.++.|.++++
T Consensus 2 ~~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~-~~~~y~L~e~~~--~~~er~L~~~e~----------- 67 (90)
T smart00314 2 TFVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTD-DPEEYVLVEVLP--DGKERVLPDDEN----------- 67 (90)
T ss_pred ceEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCC-CcccEEEEEEeC--CcEEEEeCCCCc-----------
Confidence 4578999988 99999999999999999999999999995 378999999983 367899999987
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeee
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNR 130 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k 130 (184)
..+++..|.+ .....+|++|++
T Consensus 68 ----Pl~~~~~~~~-----------~~~~~~f~lr~~ 89 (90)
T smart00314 68 ----PLQLQKLWPR-----------RGPNLRFVLRKR 89 (90)
T ss_pred ----ceEehhhCCC-----------CCCcEEEEEEeC
Confidence 7777888822 123467888875
No 13
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=98.95 E-value=5.4e-09 Score=73.42 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=69.2
Q ss_pred CeEEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE--EeCCCCCCcccccCcchhhccccCCC
Q psy5112 17 PHSIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF--SDDPIDKNLEHYLEPELKVSQTKGKY 90 (184)
Q Consensus 17 pi~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~--~~~~~~~~~~~~l~~~~k~~~~~~~~ 90 (184)
..+++||..|++ ++++.|+++||++|+++.++++.||.+ +...|+|+ .... +.++.|.+++.
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~-~~~~y~L~~~~~~~---~~er~L~~~E~-------- 69 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAE-DPSDYCLVEVEESG---GEERPLDDDEC-------- 69 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSS-SGGGEEEEEEECTT---TEEEEETTTSB--------
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCC-CCCCEEEEEEEcCC---CEEEEcCCCCc--------
Confidence 357999999999 999999999999999999999999933 88999995 4443 67899999986
Q ss_pred ccceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeee
Q psy5112 91 PLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNR 130 (184)
Q Consensus 91 ~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k 130 (184)
..++...|.+.. ...+|+||++
T Consensus 70 -------pl~i~~~~~~~~-----------~~~~f~lr~~ 91 (93)
T PF00788_consen 70 -------PLQIQLQWPKDS-----------QNSRFVLRRK 91 (93)
T ss_dssp -------HHHHHHTTSSGT-----------TTEEEEEEEC
T ss_pred -------hHHHHHhCcccc-----------CceEEEEEEc
Confidence 788888884321 2478999875
No 14
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=98.91 E-value=8.8e-09 Score=72.16 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=55.2
Q ss_pred EEEEEEec---CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 19 SIPVHLLN---GAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 19 ~~~V~llD---g~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
.++|+..| |+++++.|++.+|++|+++.+.+|.|+.+ +...|+||+....+ ..++.|.++++
T Consensus 1 ~ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~-~~~~y~L~ev~~~~-~~er~L~~~e~ 65 (87)
T cd01768 1 VLRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDD-DPEDYALVEVLGDG-GLERLLLPDEC 65 (87)
T ss_pred CEEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcC-CcccEEEEEEECCc-eEEEEeCCCCC
Confidence 37899999 99999999999999999999999999998 78899999998711 27889989887
No 15
>KOG3784|consensus
Probab=98.62 E-value=2e-07 Score=81.41 Aligned_cols=138 Identities=20% Similarity=0.138 Sum_probs=100.1
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccceee
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYV 96 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~ 96 (184)
...+.|.+|||+..++.+--+.|+.++++.+|.++|+.+.-...||||+....+.+ .+.--.|
T Consensus 107 ~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~~~~---~ls~vRk-------------- 169 (407)
T KOG3784|consen 107 EVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVRDNDPG---NLSFVRK-------------- 169 (407)
T ss_pred eeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEeccCCC---cceeeee--------------
Confidence 47889999999999999999999999999999999999877889999998762211 2211112
Q ss_pred eeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC--CCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHH
Q psy5112 97 MLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL--SKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAAL 174 (184)
Q Consensus 97 ~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~--~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl 174 (184)
+.|.-+-...... .+.....+.+|+-+|.... ...++.+...|+|.|+..|+.+|.--.+.++--+|-|+
T Consensus 170 -l~~fE~p~vs~t~-------~~~~~~~l~LRk~~~ds~~e~~L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~sl 241 (407)
T KOG3784|consen 170 -LADFESPYVSLTS-------NYVSACELLLRKWYWDSSRERALMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSL 241 (407)
T ss_pred -ecccccccccccc-------cccccccceeeeeeecchhhhHHhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHH
Confidence 3333222221111 0122345888888777654 34666777889999999999999988777666699999
Q ss_pred HHhHh
Q psy5112 175 LSQVC 179 (184)
Q Consensus 175 ~~Q~e 179 (184)
|.|-.
T Consensus 242 q~q~~ 246 (407)
T KOG3784|consen 242 QEEES 246 (407)
T ss_pred HHhhh
Confidence 98753
No 16
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=98.54 E-value=2.2e-07 Score=65.34 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
+..++|.+|||+..++.+-.+.++.++.+.+|.+|||.+.....||||+... .+.+|-|.+.+-
T Consensus 1 ~V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~--~~f~RKL~dfE~ 64 (87)
T cd01777 1 DVELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVIN--HSFVRKLAPNEF 64 (87)
T ss_pred CeEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEec--ceEEEeccCccC
Confidence 4679999999999999999999999999999999999987889999999865 345566666663
No 17
>KOG3751|consensus
Probab=98.46 E-value=2.9e-07 Score=82.78 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=75.2
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccce
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKI 94 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~ 94 (184)
.++++|+|+.-||+++.+.||.-.||+++|+.+++|=... +.+-|.||+..+ .-.+||.+.+.++
T Consensus 186 vrklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~--~d~~W~LvEh~P-~L~iER~fEDHEl------------ 250 (622)
T KOG3751|consen 186 VRKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCA--DDEDWCLVEHYP-HLQIERVFEDHEL------------ 250 (622)
T ss_pred ccceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhh--cccceeeeeecc-hhhhhhhhhhHHH------------
Confidence 3689999999999999999999999999999999999999 778899999887 2246899999998
Q ss_pred eeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeee
Q psy5112 95 YVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRL 131 (184)
Q Consensus 95 ~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~ 131 (184)
+.++++.|-. ..+-+|+||++.
T Consensus 251 ---VVEvls~W~~------------dseNK~lF~k~~ 272 (622)
T KOG3751|consen 251 ---VVEVLSMWTQ------------DSENKLLFRKNP 272 (622)
T ss_pred ---HHHHHhhccc------------CCCceeEEeecc
Confidence 9999999933 124579998885
No 18
>KOG3531|consensus
Probab=98.28 E-value=2.6e-06 Score=80.25 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=107.1
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE-EEeCCCCCCcccccCcchhhccccCCCccce
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL-FSDDPIDKNLEHYLEPELKVSQTKGKYPLKI 94 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL-~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~ 94 (184)
.-..++|.++|++...+.|....-++.+++.||.+|+|.| .++||| |.+.. ..--||+....
T Consensus 38 k~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e--~dyfglef~~~~---~~~~wld~~kp------------ 100 (1036)
T KOG3531|consen 38 KICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVE--CDYFGLEFQDIN---GNHCWLDLEKP------------ 100 (1036)
T ss_pred ceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceee--ccccceeecccc---CceEEecccch------------
Confidence 4568899999999999999999999999999999999995 566888 55443 22345544432
Q ss_pred eeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHH
Q psy5112 95 YVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAAL 174 (184)
Q Consensus 95 ~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl 174 (184)
| .|..+ ...+..+.|-.++|-+++...+....++++-.|...|...|+.-|....|.-|++.
T Consensus 101 ---i----------~rqi~-----~~~~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~lLss~ 162 (1036)
T KOG3531|consen 101 ---I----------LRQIR-----RPKDVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAALLSSH 162 (1036)
T ss_pred ---H----------HHHhc-----CccchhhheeecccCCCccccchhHHHHhhhhccccccccCCccCCCchhhhhhcc
Confidence 1 11111 12245678888899888888888888999999999999999999999999999999
Q ss_pred HHhHhhcCC
Q psy5112 175 LSQVCFKQV 183 (184)
Q Consensus 175 ~~Q~e~Gd~ 183 (184)
..|.+.|||
T Consensus 163 ~~qse~gdf 171 (1036)
T KOG3531|consen 163 IVQSEIGDF 171 (1036)
T ss_pred cccccCCch
Confidence 999999997
No 19
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=97.68 E-value=0.00023 Score=51.02 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=50.5
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCc-ccccCcchh
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNL-EHYLEPELK 82 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~-~~~l~~~~k 82 (184)
.-+...++|-|+.+.+.|+|++|+.|+.+.+.+|-.+.+ |+..||||+.....++. .+-|.+.+.
T Consensus 6 ~~~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~-nP~kFALYe~~h~~ge~~~rkL~d~E~ 71 (96)
T cd01778 6 RTSTSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVD-NPRKFALFEREHRTGQVYLRKLSDDEC 71 (96)
T ss_pred eEEEEEeccCCceeEEEEecCCcHHHHHHHHHHhheecc-CCcceEEEEEEecCCcEEEEECCCCCC
Confidence 345667888999999999999999999999999999987 88899999763311121 255555553
No 20
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=97.35 E-value=0.0007 Score=47.12 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=45.7
Q ss_pred EEEEE----ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcch
Q psy5112 20 IPVHL----LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPEL 81 (184)
Q Consensus 20 ~~V~l----lDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~ 81 (184)
++|-+ .+-+.+++.|-+.+|++|+|...|+|.+++ +++.||||.-.. +..+.|.+++
T Consensus 2 l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~--qPe~y~LFl~vd---g~~~qLadd~ 62 (87)
T cd01776 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVT--QPEEYSLFLFVE---ETWQQLAPDT 62 (87)
T ss_pred eeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhccC--ChhheeEEEEEC---CcEEEcCccc
Confidence 45666 234579999999999999999999999999 778899987664 4556666665
No 21
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=97.34 E-value=0.0014 Score=46.98 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=56.0
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
+..+||+=.|||+.++...-.||++|+...+..|-.|.+ ...|-|+.... +.++.|.+.+|
T Consensus 2 ~y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~--~~ny~l~l~~~---~l~RvL~p~Er 62 (97)
T cd01775 2 SYCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS--GGNYQLSLKKH---DLSRVLRPTEK 62 (97)
T ss_pred ceEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC--CCCeEEEEEEC---CeeeecCCcCC
Confidence 678999999999999999999999999999999999994 47899998876 88999999987
No 22
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=97.34 E-value=0.00064 Score=47.77 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=48.6
Q ss_pred EEEEec-CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcch
Q psy5112 21 PVHLLN-GAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPEL 81 (184)
Q Consensus 21 ~V~llD-g~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~ 81 (184)
.|++|- |+...+.|+|.+|+.||.+.+.+|--+.+ +...||||+.-. .+..+-|.+.+
T Consensus 5 S~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~~-~p~~FALy~vh~--~Ge~rkL~d~E 63 (87)
T cd01784 5 SVFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIEN-SAEEFALYIVHT--SGEKRKLKATD 63 (87)
T ss_pred cEeCCCCCceeEEEEecCCCHHHHHHHHHHhccccC-CHHHeEEEEEee--CCCEEECCCcC
Confidence 478899 99999999999999999999999999987 889999999865 23345555554
No 23
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=97.19 E-value=0.0006 Score=46.51 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=40.7
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
++|+||||+...+.+-+..|++|+++.+|++-||.. +.+.||...
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~---~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNP---ECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCH---HHEEEEEec
Confidence 789999999999999999999999999999999984 457787764
No 24
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=97.06 E-value=0.004 Score=44.83 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
.-.++++.|++.||+.+++..+-.+.||...+.+.|.|.+..-..+..++-+.++++
T Consensus 15 ~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld~gv~ER~l~~~E~ 71 (97)
T cd01783 15 GVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLDRGVVERTVLPQEK 71 (97)
T ss_pred CcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEecCCeeeeeCCCccC
Confidence 556889999999999999999999999998889999999987543445788888876
No 25
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=97.03 E-value=0.005 Score=42.54 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..+++|+=.|.+++-+.+...||++|+++.-.+..||.. ..+.|||++..-
T Consensus 2 d~VlkvykaDQt~kyili~K~Tta~evv~lal~eFgi~~-~s~~~sLceVtV 52 (85)
T cd01785 2 DHVLKVYKADQTCKYLLIYKETTAHEVVMLALQEFGITA-PSSNFSLCEVSV 52 (85)
T ss_pred cceEEEEecCcceeEEEEeccccHHHHHHHHHHHhCCCC-CccceEEEEEEe
Confidence 468999999999999999999999999999999999997 478899998875
No 26
>KOG4371|consensus
Probab=96.94 E-value=0.00066 Score=65.79 Aligned_cols=136 Identities=16% Similarity=0.058 Sum_probs=91.9
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccceeeeee
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYVMLC 99 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~i~ 99 (184)
.-+.+.+|.+...++.+-|-.-++..- .. +.+-|||-...- ....++++..|.++.-+|++
T Consensus 40 ~l~~t~~~~S~~~e~s~~T~~hdv~~~------~~--d~elfglA~~~r---~ey~f~dp~~k~skyg~k~~-------- 100 (1332)
T KOG4371|consen 40 ALTSTSSGNSTQKESSPFTDFHDVPPP------PV--DPELFGLAQNRR---EEYSFEDPFLKESKYGGKGS-------- 100 (1332)
T ss_pred eeEEeecCceeeeecccccccccCCCC------CC--cccccchhhhhc---ccccccChhhhhhhhcCCCC--------
Confidence 345666777777777777766665542 34 667788855442 33345566666444444441
Q ss_pred hhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCC--CCCHHHHHHHHHHHHh
Q psy5112 100 DVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRF--PLTKELALELAALLSQ 177 (184)
Q Consensus 100 D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~--p~~~e~a~~LAAl~~Q 177 (184)
-+++|-.... ++....-|+||++++....-...++..+.-+|.|++++++.--. |.+++.+..+|++.+|
T Consensus 101 -r~s~~h~ld~-------~~rp~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr~~~e~a~~~~a~lalq 172 (1332)
T KOG4371|consen 101 -RLSQSHRLDE-------TFRPELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPRPAPEKAAEEYARLALQ 172 (1332)
T ss_pred -ccccccccCc-------cCCeeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCCcchHHHHHHHHhhhhc
Confidence 1233322111 12235789999999999887888899999999999999997444 4667888999999999
Q ss_pred HhhcC
Q psy5112 178 VCFKQ 182 (184)
Q Consensus 178 ~e~Gd 182 (184)
..+||
T Consensus 173 ~d~g~ 177 (1332)
T KOG4371|consen 173 NDFGE 177 (1332)
T ss_pred CccCc
Confidence 99997
No 27
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=96.94 E-value=0.0063 Score=44.50 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=47.6
Q ss_pred EEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCC--CCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 19 SIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRD--SNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 19 ~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~--~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
+.+.+|-|+. ++.+.|+|.+|+.||.+.+.+|--+.. -+...||||+.-. .+.++-|.+.++
T Consensus 23 vmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~--nGe~RKL~d~E~ 90 (112)
T cd01782 23 VMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHE--NGEERRLLDDEK 90 (112)
T ss_pred EEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEec--CCceEEcCCcCC
Confidence 6788999986 688999999999999999999977331 0334899999876 234567766664
No 28
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=96.86 E-value=0.0071 Score=40.99 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=36.3
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
.++|++|||+.-.+.+-+..|++|+++.+|++-||.. ....+|.
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~---~~~~V~~ 45 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNP---ECCDVRL 45 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--C---CCEEEEE
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCH---HHEEEEE
Confidence 4799999999999999999999999999999999985 3466663
No 29
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=96.83 E-value=0.0026 Score=43.40 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=39.3
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
++|++|||+.-.+.+-+..|++|++..+|++-||.. +...+|..
T Consensus 2 crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~---~~~~vf~~ 45 (73)
T cd01817 2 CRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGINY---AAVDLFLV 45 (73)
T ss_pred cEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCh---hHEEEEEe
Confidence 789999999999999999999999999999999995 34666655
No 30
>smart00455 RBD Raf-like Ras-binding domain.
Probab=96.80 E-value=0.0032 Score=42.62 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=39.6
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
++|++|||+...+.+-+..|++|+++.+|++-||.. +...+|..
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~---~~~~v~~~ 45 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNP---ECCVVRLR 45 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCH---HHEEEEEc
Confidence 689999999999999999999999999999999974 55777764
No 31
>KOG1574|consensus
Probab=96.66 E-value=0.005 Score=53.79 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=62.5
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
..+.++|+.-.-....+.++..|||+||+-.+++.+|=+ -. |.|.+.+- +.||.|.|.+.
T Consensus 4 ~~melkVWVdgeer~VcGvt~~TTCqdVV~ALa~aigq~--Gr--f~iVEKwR---~~ER~L~p~er------------- 63 (375)
T KOG1574|consen 4 QEMELKVWVDGEERIVCGVTERTTCQDVVIALAQAIGQK--GR--FTIVEKWR---GYERHLAPSER------------- 63 (375)
T ss_pred hhceEEEEeccceeeeecccCCccHHHHHHHHHHHhCCC--Cc--eEEeehhc---ccccccCCccC-------------
Confidence 356788888777788899999999999999999999988 44 99999986 89999999998
Q ss_pred eeeehhHHHHHHHH
Q psy5112 96 VMLCDVISKWETAL 109 (184)
Q Consensus 96 ~~i~D~l~~we~~~ 109 (184)
+++++.+|-.+.
T Consensus 64 --pl~ll~~wge~a 75 (375)
T KOG1574|consen 64 --PLKLLAKWGEYA 75 (375)
T ss_pred --HHHHHHhhhhcc
Confidence 999999996543
No 32
>KOG4257|consensus
Probab=96.66 E-value=0.00074 Score=63.11 Aligned_cols=149 Identities=21% Similarity=0.161 Sum_probs=95.4
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccceeeee
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYVML 98 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~i 98 (184)
..+|++++|.++++.+|-.+|+.-+...++..+|+..++...|+.-......+ ...++..+.-| +| +
T Consensus 4 L~rv~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~~~~~~~~~acr~~t~i~~-~~~~~~~S~~~------~~------~ 70 (974)
T KOG4257|consen 4 LARVFLPGGASKAVRYDVQTTIERVIHVVARGIGISQVAVAHFACRLVTGISP-QTAGSGDSLWL------HP------M 70 (974)
T ss_pred ccccccCCCcceeeeecchhheeeeeeeeeeccCCCchhhhheeeeeccccch-hhhhhcccccc------ch------h
Confidence 46789999999999999999999999999999999966655566544332100 01122111100 00 0
Q ss_pred ehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC--CCCCChhhHHhHHHhhhhhhhcCC-CCCCHHHHHHHHHHH
Q psy5112 99 CDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL--SKKETDRERLLLCYQTNQQVVLGR-FPLTKELALELAALL 175 (184)
Q Consensus 99 ~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~--~~~~d~~e~~l~y~Q~~~~v~~G~-~p~~~e~a~~LAAl~ 175 (184)
.-.+.-=+-+.+....+ .++.|++=+|.|+...+. ...+|..+..++|.|+++|+..-. ...+.+.|++||+|-
T Consensus 71 l~~i~lp~cy~~~lp~~---~s~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~ 147 (974)
T KOG4257|consen 71 LRIIQLPHCYARHLPIG---VSDEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLK 147 (974)
T ss_pred hhhccccccccccCCCC---cchhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00000000001111111 246899999999776553 245677778888999999998743 346789999999999
Q ss_pred HhHhhcCC
Q psy5112 176 SQVCFKQV 183 (184)
Q Consensus 176 ~Q~e~Gd~ 183 (184)
+.--|.++
T Consensus 148 vrr~Fk~~ 155 (974)
T KOG4257|consen 148 VRRDFKEH 155 (974)
T ss_pred HHHHHHhC
Confidence 88777654
No 33
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=96.61 E-value=0.015 Score=42.07 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=47.1
Q ss_pred ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCC--------CCcccccCcchh
Q psy5112 25 LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPID--------KNLEHYLEPELK 82 (184)
Q Consensus 25 lDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~--------~~~~~~l~~~~k 82 (184)
++-.++++.+++.+|+.+++...-+|-||...+++.|-|.+..... ...+|-+.++++
T Consensus 13 ~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~E~ 78 (100)
T cd01781 13 PTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSNDDDRKSSDLREIDERILDDDEC 78 (100)
T ss_pred CCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEecccccccccccceeEEeCCCCcC
Confidence 6667999999999999999999999999998789999999876521 113466666665
No 34
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=96.55 E-value=0.0088 Score=43.71 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=38.5
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
++++|...||++++|.|...+++.|+...+-+|+|+.+ ....|..|..+.
T Consensus 1 hvi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~-~~~~~~~~v~d~ 50 (105)
T PF14847_consen 1 HVIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE-HPRNYCFYVLDG 50 (105)
T ss_dssp -EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS---CCCEEEEEE-S
T ss_pred CEEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc-ccccceEEEecc
Confidence 36899999999999999999999999999999999997 567788887664
No 35
>KOG4229|consensus
Probab=96.13 E-value=0.0033 Score=61.89 Aligned_cols=134 Identities=16% Similarity=0.070 Sum_probs=100.5
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccc
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
..++....|.+++|..++...|+++++.|.+....++.+..+ . +|++.... ....+..
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~--~~~~~~~s------~l~rg~~------------ 664 (1062)
T KOG4229|consen 607 VAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPED--R--PSLFEELS------ALARGQD------------ 664 (1062)
T ss_pred ccccccchhhhccccccccccccccchHHHHHhhhccccccC--C--hhhhcchh------hcCCCcc------------
Confidence 457788899999999999999999999999999999999984 3 57775442 1223333
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCCCCCH-HHHHHHH
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTK-ELALELA 172 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~-e~a~~LA 172 (184)
+.+++++...++..++... +...+|+++++.-.+.+++.+.. ....++|.|.+.....|.|+|+. .++.+.|
T Consensus 665 ---~~~~~i~~~~~~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 737 (1062)
T KOG4229|consen 665 ---HFMRAISQNPRYALEQGSQ--ERKGPRRLSSRGSTATPSHDRPG--RKTNLLYSEVVNGRKNSEYLCSPRPDLAERA 737 (1062)
T ss_pred ---chhhhhhcCchhhhhhcCc--ccCchhhhhhcccccCCCCCCcc--ccccccchhhhcccccccccCCCCHHHHHHH
Confidence 4788886666666655442 23568999999888888765433 66889999999999999999985 5555555
Q ss_pred HHHH
Q psy5112 173 ALLS 176 (184)
Q Consensus 173 Al~~ 176 (184)
+-+.
T Consensus 738 ~~~~ 741 (1062)
T KOG4229|consen 738 RVQL 741 (1062)
T ss_pred HHHH
Confidence 5543
No 36
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=95.93 E-value=0.02 Score=34.83 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=37.9
Q ss_pred EEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 21 PVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 21 ~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
+|++.||+...+.+++.+|++++.+.++.+.|+ +...|.|+...
T Consensus 1 ~v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~---~~~~~~l~~~~ 44 (69)
T cd00196 1 KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGL---PPEQQRLLVNG 44 (69)
T ss_pred CeEecCCCEEEEEcCCCCcHHHHHHHHHHHHCc---ChHHeEEEECC
Confidence 366779999999999999999999999999993 45779998754
No 37
>KOG2378|consensus
Probab=95.85 E-value=0.031 Score=50.40 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=53.6
Q ss_pred eeccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 6 ILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 6 ~~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.+.|-|++-+-.+.++||++|-++.++.+--+++++|++..+++|+|-+ .|-.|...+.
T Consensus 224 ~~tr~~v~~sDev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~s----eel~LV~v~s 282 (573)
T KOG2378|consen 224 ALTRCPVRGSDEVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYS----EELILVKVSS 282 (573)
T ss_pred ccccCCccCCCeeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccc----cceeEEEEcc
Confidence 5689999999999999999999999999999999999999999999988 4477776655
No 38
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=95.82 E-value=0.049 Score=39.04 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=55.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccceeeeeehhHHHHHHH
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYVMLCDVISKWETA 108 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~i~D~l~~we~~ 108 (184)
++.+.+.+.+|++|+.+.+..+|||. -.-.|-|-++... +++|+.|.+.+. -.--+--|-+.
T Consensus 26 ~C~v~a~k~sTAa~VI~~~i~~L~Ld--~tk~YvLaEVkEs-GgEEwvL~p~D~---------------pvqR~lLWPr~ 87 (105)
T cd01779 26 SCRVTATKDSTAADVIDDVIASLQLD--GTKCYVLAEVKES-GGEEWVLDPTDS---------------PVQRVLLWPRR 87 (105)
T ss_pred EeEeEeccCCcHHHHHHHHHHHhCcC--ccccEEEEEeecc-CCeeeecCcccC---------------ceeeEEeccHH
Confidence 68899999999999999999999999 5566888766542 256788888876 22233457665
Q ss_pred HHHhCCCcccCCceeEEEEee
Q psy5112 109 LREKGTGKFENNRCVQFIYKN 129 (184)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~fr~ 129 (184)
..+.+.. ...+.|+++-
T Consensus 88 aqe~hp~----~~gyyFlLqe 104 (105)
T cd01779 88 AQEEHPQ----EDGYYFLLQE 104 (105)
T ss_pred HHhcCCC----cCceEEEEec
Confidence 5554432 2357777663
No 39
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=95.54 E-value=0.023 Score=39.38 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=32.4
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.+.+||.-.||..+ |+++++.|++++.+.|.+.+++.. ++|+||...
T Consensus 4 ~milRvrS~dG~~R-ie~~~~~t~~~L~~kI~~~l~~~~---~~~~L~~~~ 50 (80)
T PF11543_consen 4 SMILRVRSKDGMKR-IEVSPSSTLSDLKEKISEQLSIPD---SSQSLSKDR 50 (80)
T ss_dssp --EEEEE-SSEEEE-EEE-TTSBHHHHHHHHHHHS---T---TT---BSSG
T ss_pred cEEEEEECCCCCEE-EEcCCcccHHHHHHHHHHHcCCCC---cceEEEecC
Confidence 57899999999986 589999999999999999999883 379998654
No 40
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.35 E-value=0.093 Score=35.83 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=43.9
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
....|+|+|+||+.....+.++.|++++.+-|...++.. ....|.|+...|
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~P 55 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFP 55 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSS
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCC
Confidence 456799999999999999999999999999999998888 434599986654
No 41
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=95.30 E-value=0.061 Score=36.16 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=39.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.+.|..++|.+.++.+++++|++++=+.|+++-|+.. +...|+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~---~~q~L~~ 45 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE---EQQRLLF 45 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH---HHeEEEE
Confidence 35788999999999999999999999999999999874 4477763
No 42
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=95.08 E-value=0.047 Score=37.50 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=33.6
Q ss_pred EEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 21 PVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 21 ~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.|.|+||+..++.+-+..|+.|+++..|.+=||.+
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp 37 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDP 37 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCCh
Confidence 58999999999999999999999999999999985
No 43
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=94.92 E-value=0.093 Score=35.85 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|+.+.|..++|+..+++++++.|++|+=+.|+++.|+..
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~ 39 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPK 39 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCCh
Confidence 678999999999999999999999999999999999763
No 44
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=94.88 E-value=0.061 Score=36.14 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=37.5
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
++|++++|...+++++++.|++++=+.|+++.|+.. +...|+.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~---~~q~Li~ 43 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDP---CCQRWFF 43 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCH---HHeEEEE
Confidence 478999999999999999999999999999999763 4467764
No 45
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.88 E-value=0.094 Score=35.91 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=39.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL 63 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL 63 (184)
+++.+.|..++|...++.++++.|++|+=+.|+++.|+.. +-..|
T Consensus 1 ~~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~---~~qrL 45 (80)
T cd01792 1 MGWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPA---FQQRL 45 (80)
T ss_pred CceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCH---HHEEE
Confidence 3588999999999999999999999999999999999763 33555
No 46
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=94.80 E-value=0.11 Score=34.27 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=38.2
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
|.+.|..++|...++.++++.|++++-+.|+.+.|+.. +..-|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~L~~ 45 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPV---EQQRLIY 45 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH---HHeEEEE
Confidence 46889999999999999999999999999999999863 3355553
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.76 E-value=0.1 Score=36.41 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=41.2
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+..|.++|..++|....+.|.+++|.+.+.+.+|++.|+.. +.+.|+
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~---~~~rf~ 55 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM---NSVRFL 55 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc---cceEEE
Confidence 46789999999999999999999999999999999999984 335554
No 48
>PTZ00044 ubiquitin; Provisional
Probab=94.60 E-value=0.12 Score=34.65 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=38.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+.+.|..++|.+.++.++++.|++++=+.|+++.|+.. +..-|+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~---~~q~L~ 44 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDV---KQIRLI 44 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH---HHeEEE
Confidence 35788999999999999999999999999999999863 446665
No 49
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=94.45 E-value=0.13 Score=34.13 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=37.9
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+.+.|..+||....+.+++++|++++-+.|+.+.|+.. +..-|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~---~~qrL~ 44 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP---QQQRLI 44 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCCh---hhEEEE
Confidence 45789999999999999999999999999999999874 335665
No 50
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=94.42 E-value=0.16 Score=33.72 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
|.++|...||....+.+.+.+|++.+.+..|++.|+.. .+.+-|+.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~--~~~~~l~f 46 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPP--EESIRLIF 46 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT---TTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCc--cceEEEEE
Confidence 57889999999999999999999999999999999994 34566654
No 51
>KOG4239|consensus
Probab=94.40 E-value=0.071 Score=45.84 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=44.8
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.-..|++|-.+...+.|+|.||+.|+...+-.|--+.+ ++..||||+...
T Consensus 204 h~TSfflPa~svk~vrInStttt~eVI~~LLkKF~Ved-~P~kFALy~~~~ 253 (348)
T KOG4239|consen 204 HRTSFFLPADSVKNVRINSTTTTREVIKLLLKKFRVED-NPQKFALYERHE 253 (348)
T ss_pred cceeeecccccceeEEecccccHHHHHHHHHHHHeecC-CHhheeeeEEee
Confidence 34567888889999999999999999999999999998 899999998765
No 52
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.25 E-value=0.4 Score=33.75 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE-EEeC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL-FSDD 67 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL-~~~~ 67 (184)
..++.-+.|..+-+.+.++....++.+.|++|+|+..-...+|.| |.++
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDD 51 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDD 51 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcC
Confidence 456667899999999999999999999999999999311378999 6554
No 53
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=94.15 E-value=0.18 Score=36.55 Aligned_cols=49 Identities=8% Similarity=-0.085 Sum_probs=42.6
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
.+..+.+.|..++|...+++++++.|++++=+.|+++-|+.. +...|+.
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~---~~QrLi~ 72 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPV---AQQHLIW 72 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh---HHEEEEE
Confidence 455799999999999999999999999999999999999763 4577764
No 54
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=93.71 E-value=0.22 Score=33.11 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=37.5
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+.+.|..++|....+.++++.|++++-+.|+.+.|+.. +..-|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~---~~q~L~ 44 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP---DQQRLI 44 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCH---HHeEEE
Confidence 35788999999999999999999999999999999863 335565
No 55
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=93.67 E-value=0.24 Score=31.45 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=36.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.+.|..++ ....+.+++++|++++-+.|+.+.|+.. +...|..
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~---~~~~L~~ 44 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPV---EQQRLIY 44 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCH---HHEEEEE
Confidence 468889999 6888999999999999999999999863 2355543
No 56
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=93.57 E-value=0.24 Score=33.17 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=33.6
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDC 53 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL 53 (184)
+.+.|..++|...++.+++++|++++=+.|+++.|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 457889999999999999999999999999999998
No 57
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=93.42 E-value=0.2 Score=33.21 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=36.6
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.|..++|...++.++++.|++++=+.|+.+.|+.. +...|+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~---~~q~Li~ 43 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPP---DQLRVIF 43 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCH---HHeEEEE
Confidence 357889999999999999999999999999999863 3466653
No 58
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=93.22 E-value=0.72 Score=31.17 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=39.7
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
++.++|++ +|..+.+.+++..|-.|+.++|++++++.. ..|.|-..+
T Consensus 1 ~~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~---~~~~l~Y~D 47 (81)
T smart00666 1 TVDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDN---QSFTLKYQD 47 (81)
T ss_pred CccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCC---CCeEEEEEC
Confidence 46788988 888999999999999999999999999873 558884443
No 59
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.10 E-value=0.19 Score=33.53 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=28.0
Q ss_pred EEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 22 VHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 22 V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
|...|+....|.+.++||..|+++..|.+.||.. +.|.|.-
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~---~~~~L~h 41 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDP---SSYDLKH 41 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--G---GG-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCc---cceEEEE
Confidence 3457899999999999999999999999999995 2577764
No 60
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=92.83 E-value=0.31 Score=32.60 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=36.8
Q ss_pred EEEEEe-cCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 20 IPVHLL-NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 20 ~~V~ll-Dg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
++|+.+ +|.+..+.++++.|++++=+.|+.+-|+.. +...|+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~---~~q~Li~ 44 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPA---SQQQLIY 44 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCH---HHeEEEE
Confidence 468899 999999999999999999999999999873 4466653
No 61
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=92.73 E-value=0.54 Score=31.80 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=38.9
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..|.|+|+||+.....+.++.|++++.+-|-....- ...|.|....+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~----~~~f~L~t~~P 49 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP----AEPFTLMTSFP 49 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC----CCCEEEEeCCC
Confidence 358999999999999999999999999999766543 34588887655
No 62
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=92.46 E-value=0.71 Score=31.46 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=39.7
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
...|.|+|+||+.....+.++.|++++.+-|....+.. ...|.|...-+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~---~~~f~L~t~~P 52 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG---NDPFTLNSPFP 52 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC---CCCEEEEeCCC
Confidence 45789999999999999999999999999996555443 24588887654
No 63
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=92.27 E-value=0.18 Score=32.76 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.9
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
++|+++||.... +...+|+.|++..|...++=.
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~ 33 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR 33 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh
Confidence 689999999977 778899999999999887765
No 64
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.09 E-value=0.65 Score=31.79 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=38.7
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
-.+.|+|+||+.....+.+++|.+++.+-|....+- ...|.|....|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~----~~~f~L~t~fP 51 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN----GGPFTLMTPFP 51 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC----CCCEEEEeCCC
Confidence 458999999999999999999999999999866432 25588876555
No 65
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=92.05 E-value=0.35 Score=32.41 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=37.0
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
|.|..++|.+.+++++++.|++++=+.|+.+.|+.. +.+.|+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---~~q~L~~ 43 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQA---DQFWLSF 43 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCH---HHeEEEE
Confidence 357889999999999999999999999999999763 5577763
No 66
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=92.01 E-value=0.46 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=31.8
Q ss_pred CeEEEEEEecCCEEEEEE--cCCCCHHHHHHHHHHHhC
Q psy5112 17 PHSIPVHLLNGAYQVTGF--DGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~v--dsstT~~e~~~~i~~klg 52 (184)
||.+.|..+||....+.+ +++.|++|+=+.|+...+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~ 38 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP 38 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC
Confidence 689999999999966666 899999999999998875
No 67
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=91.75 E-value=1.4 Score=30.65 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=39.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
+.+++++ +|....+.+.++.+..++++.|++++++. +..+|.|-..+
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~--~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLD--DMSAFDLKYLD 47 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCC--CCCeeEEEEEC
Confidence 3577777 56689999999999999999999999998 55789994444
No 68
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=91.72 E-value=0.56 Score=30.71 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=36.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
|.+.|... |...++.++++.|++++-+.|+.+-|+.. +...|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~---~~q~L~~ 44 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEP---RDQKLIF 44 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCCh---HHeEEee
Confidence 45778886 88899999999999999999999999874 3366654
No 69
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.44 E-value=1.1 Score=30.83 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=39.9
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
-.+.|+|+||+..+..+..+.|++++-+.|....+-. ....|.|...-|
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~--~~~~f~L~t~fP 53 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF--AARPFTLMTAFP 53 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC--CCCCEEEecCCC
Confidence 4689999999999999999999999999999876543 335588865444
No 70
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=90.72 E-value=2.7 Score=29.53 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=44.7
Q ss_pred EEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 19 SIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 19 ~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.+||.+-++. ++.|.+.+.-....+.+..-+|-++.....+.|-|+...+
T Consensus 4 iIRVs~e~~~~gn~YKSIlltsqDktP~VI~ral~Khnl~~~~~~~Y~L~Q~Lp 57 (87)
T cd00153 4 IIRVSLEDDNQGNLYKSILLTSQDKAPQVIRRAMEKHNLESEVAEDYELVQVLP 57 (87)
T ss_pred EEEEEeecCCCcceEEEEEEecCCcCHHHHHHHHHHhCCCcCCccceEEEEEcC
Confidence 5778877665 7999999999999999999999999986689999999887
No 71
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=90.69 E-value=1.6 Score=31.20 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=46.2
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 28 AYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 28 ~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
-.+.+.+....++..++...-++-+|.+.++..|+||+..+ +.||.|.-++|
T Consensus 25 ~~K~~rvs~dDpC~kVL~~Alkry~I~~~dW~~Y~L~I~Yg---dqER~L~ldEK 76 (98)
T cd01786 25 PLKQLRASKEDSCEKILKNAMKRHNLNDQDWRQYVLVICYG---DQERILDLDEK 76 (98)
T ss_pred cchheeeeccCcHHHHHHHHHHHcCCChhhhhheEEEEEeC---Ceeeecccccc
Confidence 36778888888999999999999999976799999999987 89999988888
No 72
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=90.16 E-value=1 Score=31.26 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=34.1
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
|-+++|+|-+ +.+|.+-+..+-+++.++|++||+|.
T Consensus 2 ~~vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~ 37 (80)
T cd06406 2 SYVVKVHFKY--TVAIQVARGLSYATLLQKISSKLELP 37 (80)
T ss_pred CeEEEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 5789999998 99999999999999999999999997
No 73
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=90.00 E-value=0.71 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=33.2
Q ss_pred EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 24 LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 24 llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
.++|....+.+++++|++++=+.|+.+.|+.. +..-|+.
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---~~~~L~~ 40 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPP---EQQRLIY 40 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTG---GGEEEEE
T ss_pred CCCCcEEEEEECCCCCHHHhhhhccccccccc---ccceeee
Confidence 57899999999999999999999999999773 3455543
No 74
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=89.83 E-value=0.99 Score=29.87 Aligned_cols=42 Identities=7% Similarity=0.208 Sum_probs=34.5
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
.+.|..++|.. ++.++++.|++++=+.|+++.|+. .+.+.|.
T Consensus 2 ~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i~---~~~~~Li 43 (71)
T cd01808 2 KVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKAN---QEQLVLI 43 (71)
T ss_pred EEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCCC---HHHEEEE
Confidence 46777888975 899999999999999999999965 3456664
No 75
>KOG1892|consensus
Probab=89.81 E-value=0.72 Score=45.45 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=48.6
Q ss_pred eEEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHh----CCCCCCCceeEEEEeCCCCCCcccccCcchh
Q psy5112 18 HSIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEI----DCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82 (184)
Q Consensus 18 i~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~kl----gL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k 82 (184)
=+.++||-|+. ++-|-|.|..|..+|++++++|. .+- +...||||++-. +.||-|..++|
T Consensus 41 GVMRFYFQDag~kvaTKCiRVsStATt~dVidtL~EKFrPDmrML--S~p~YsLyEVH~---nGERrL~~dEK 108 (1629)
T KOG1892|consen 41 GVMRFYFQDAGGKVATKCIRVSSTATTQDVIDTLAEKFRPDMRML--SSPKYSLYEVHV---NGERRLDIDEK 108 (1629)
T ss_pred eeEEEEeecccchhhhheeEecccccHHHHHHHHHHHhCcchhhh--cCCCceeeeeec---CcccccCcccC
Confidence 36789999987 67789999999999999999983 344 445699999876 66777777776
No 76
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=89.06 E-value=2.8 Score=29.48 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.4
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.|-++|++ +|....+.++++.+-+|+++.|.+++|+. ..|.+-..+
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~----~~~~iKykD 47 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK----RRLKIKMKD 47 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC----CceEEEEEc
Confidence 46788887 45589999999999999999999999998 358885544
No 77
>KOG4371|consensus
Probab=88.73 E-value=0.59 Score=46.18 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhh---HHhHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhH
Q psy5112 102 ISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRE---RLLLCYQTNQQVVLGRFPLTKELALELAALLSQV 178 (184)
Q Consensus 102 l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e---~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~ 178 (184)
-++|....+.. ...+..+.+|.+++........+.+. +.-+|.|++.+++....--..|.+-++||+..|.
T Consensus 573 asewk~~As~~------~~PP~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalqa 646 (1332)
T KOG4371|consen 573 ASEWKSVASVG------VKPPYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQA 646 (1332)
T ss_pred chhhHHHhhcc------cCCCeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhhh
Confidence 45675544321 23478889999998876655556565 9999999999999988877888889999999999
Q ss_pred hhcCCC
Q psy5112 179 CFKQVG 184 (184)
Q Consensus 179 e~Gd~~ 184 (184)
.+|+.+
T Consensus 647 dsGNr~ 652 (1332)
T KOG4371|consen 647 DSGNRP 652 (1332)
T ss_pred hcCCCC
Confidence 999753
No 78
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=88.65 E-value=1.3 Score=32.58 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.4
Q ss_pred CeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHH
Q psy5112 17 PHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 17 pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~k 50 (184)
.|.++..+.||+ ...+.+++++|++++-+.|...
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~ 36 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAE 36 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHS
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHH
Confidence 578999999999 9999999999999999999874
No 79
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=88.23 E-value=1.2 Score=30.39 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=39.7
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
+++||||.+.-.+++-+..|++|++....++=||.+ +..+.|...
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~p---e~C~V~~~~ 46 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQP---ECCAVFRLG 46 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCh---hHeEEEEcC
Confidence 789999999999999999999999999999999985 456777653
No 80
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=87.98 E-value=2 Score=29.02 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=33.8
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|.-+.|+...+.++++.|++|+=+.|+.+-|+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~ 39 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRP 39 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 56777778899999999999999999999999988764
No 81
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=87.04 E-value=1.5 Score=28.03 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=30.9
Q ss_pred EEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 22 VHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 22 V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|...+|....+.+++++|++++-+.|+++.|+..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~ 35 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPP 35 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 6677899999999999999999999999999764
No 82
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.86 E-value=3 Score=29.02 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=38.6
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.+.|.|+|+||+...-.+..+.|++++.+-|.. .+- ....|.|....|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~---~~~~f~L~t~FP 51 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKE---TPEKFQIVTNFP 51 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCC---CCCcEEEecCCC
Confidence 567899999999999999999999999999953 332 336688876554
No 83
>KOG4335|consensus
Probab=85.50 E-value=0.016 Score=52.57 Aligned_cols=145 Identities=10% Similarity=0.025 Sum_probs=91.3
Q ss_pred CCeEEEEEEecCCE--EEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccc
Q psy5112 16 LPHSIPVHLLNGAY--QVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 16 ~pi~~~V~llDg~~--~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
.+-.+.++..+|.+ +.+.+--.++++-...-|.-+..+. +.|.+|..+. +.+..+++.-+ |.+
T Consensus 240 ~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~~~~q----s~f~~w~cs~---~lslqlk~~h~--------p~~ 304 (558)
T KOG4335|consen 240 YLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLSEKLQ----SFFPAWLCSR---GLSLQLKLRHR--------PAR 304 (558)
T ss_pred hhHHHHHHHHhhhhheehhhccCCccccchhhhcchHHHHH----HHhHHHHhhc---chhhhhhhccC--------Ccc
Confidence 34455566666765 4455556666665554444333344 4488877665 44444433322 111
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC--CCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHH
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL--SKKETDRERLLLCYQTNQQVVLGRFPLTKELALEL 171 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~--~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~L 171 (184)
+...|-....+.+... +-.....+..+|-.++.-. ...+||....++|+-++++++.|.|-......+.+
T Consensus 305 -------~v~~wp~LL~e~~N~s-p~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~v 376 (558)
T KOG4335|consen 305 -------AVPGWPELLNEYRNVS-PVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSV 376 (558)
T ss_pred -------cccccHHHHHHHhcCC-ccCCccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeeh
Confidence 2223433333322211 1234567888888888643 46899999999999999999999999998888889
Q ss_pred HHHHHhHhhcCC
Q psy5112 172 AALLSQVCFKQV 183 (184)
Q Consensus 172 AAl~~Q~e~Gd~ 183 (184)
|.+..+.-++.+
T Consensus 377 a~i~l~~vhv~~ 388 (558)
T KOG4335|consen 377 ASISLEGVHVVD 388 (558)
T ss_pred hhhhcccceeec
Confidence 988888777654
No 84
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=84.74 E-value=6.1 Score=26.33 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=37.0
Q ss_pred eEEEEEEecCCEEEEEEc-CCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFD-GSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vd-sstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
+.+++++.+ ....+.+. +.+|-.++.+.|++++++. . ..|.|...+.
T Consensus 1 ~~vK~~~~~-~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~-~~~~l~y~D~ 48 (81)
T cd05992 1 VRVKVKYGG-EIRRFVVVSRSISFEDLRSKIAEKFGLD--A-VSFKLKYPDE 48 (81)
T ss_pred CcEEEEecC-CCEEEEEecCCCCHHHHHHHHHHHhCCC--C-CcEEEEeeCC
Confidence 357888875 46667777 9999999999999999998 3 5688865553
No 85
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=84.25 E-value=9 Score=25.67 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=40.3
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.+.+++++-++....+.+.+..|-.++...|+.+.|+.+ ..|.|...+
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~---~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLD---EDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTST---SSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCC---ccEEEEeeC
Confidence 367899999888888999999999999999999999972 448885444
No 86
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.41 E-value=5.8 Score=27.26 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=38.7
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..+.|+|+||+...-.+.++.|.+++.+-|..+ |-. ...|.|....|
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~---~~~f~L~t~fP 51 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP---IDEYKLLSSWP 51 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC---CCCEEEecCCC
Confidence 568999999999999999999999999999764 433 34688886655
No 87
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=83.27 E-value=4.2 Score=31.94 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=39.4
Q ss_pred eEEEEEEecC----CEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 18 HSIPVHLLNG----AYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 18 i~~~V~llDg----~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
|.|-|..+|| .+..+.+.+++|+.++...|..+++... ..-+-|+...
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~--~~~~~L~~~~ 52 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPS--SSQLYLTTNS 52 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCc--cceeEEEEeC
Confidence 4567888999 6999999999999999999999999994 3435666543
No 88
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=83.05 E-value=4 Score=27.15 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=30.4
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
++++.++.++++.|++++=+.|+.+-|+.. +...|+.
T Consensus 7 ~~~~~~l~v~~~~tV~~lK~~i~~~~gip~---~~q~Li~ 43 (74)
T cd01793 7 AQNTHTLEVTGQETVSDIKAHVAGLEGIDV---EDQVLLL 43 (74)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHhhhCCCH---HHEEEEE
Confidence 357899999999999999999999999863 3356653
No 89
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=83.02 E-value=3.6 Score=27.99 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=36.7
Q ss_pred eEEEEEEecCCE-EEEE-EcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAY-QVTG-FDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~-~~v~-vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.+.|..++|.. .++. ++++.|++++=+.|+++-|+.. +...|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~---~~QrLi~ 47 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEP---ECQRLFY 47 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCH---HHeEEEe
Confidence 357889999997 5885 8999999999999999999763 4567764
No 90
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.85 E-value=5.4 Score=27.75 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=38.4
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.|.|+|+||+...-.+..+.|.+++...|..+ |. ....|.|....|
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~---~~~~f~L~t~FP 52 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GY---PNERFELLTNFP 52 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CC---CCCCEEEecCCC
Confidence 58899999999999999999999999998883 43 336699886655
No 91
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=82.79 E-value=4.6 Score=27.16 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=29.9
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.|.+ +|....++++++.|++++=+.|+++.|+..
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~ 37 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLP 37 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCH
Confidence 344554 677778999999999999999999999774
No 92
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=82.56 E-value=5.3 Score=28.49 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=39.8
Q ss_pred EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 24 LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 24 llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.+|..+-.+.++..+|++|+++.+-.|.+=+..+.+.|=|.++.-
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~~fVLvEEv~ 53 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPSDFVLVEEVC 53 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCccceEEEEEee
Confidence 578888999999999999999999999998777889999987654
No 93
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=82.41 E-value=2.4 Score=29.42 Aligned_cols=36 Identities=22% Similarity=0.072 Sum_probs=25.2
Q ss_pred HHhhhhhhhcCC--CCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 149 CYQTNQQVVLGR--FPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 149 y~Q~~~~v~~G~--~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|..+..-|.... .+++.++-++|=||.-|+..|||+
T Consensus 5 F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~ 42 (87)
T PF00887_consen 5 FEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCD 42 (87)
T ss_dssp HHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCc
Confidence 344444444443 488999999999999999999985
No 94
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=81.79 E-value=2.9 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=32.1
Q ss_pred ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 25 LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 25 lDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
++|.+.+++++++.|++++=+.|...-|+.. +...|..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~---~~q~L~~ 42 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPA---GKQKLQY 42 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCH---HHEEEEE
Confidence 5899999999999999999999999999763 3356653
No 95
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=81.20 E-value=2.9 Score=29.14 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=31.4
Q ss_pred HHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 148 LCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 148 ~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
.|.++...|..-...++.++-++|=||.-|+..|||+
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~ 40 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCN 40 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCC
Confidence 3667777777777778999999999999999999985
No 96
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=79.92 E-value=5.1 Score=28.69 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCCeEEEEEEe-cCCEEEEEEcCCCCHHHHHHHHHHH----hCCCCCCCceeEEEEeCCCCCCcccccCcch
Q psy5112 15 SLPHSIPVHLL-NGAYQVTGFDGSTTIEEFLQTLNSE----IDCRDSNVSGFALFSDDPIDKNLEHYLEPEL 81 (184)
Q Consensus 15 ~~pi~~~V~ll-Dg~~~~v~vdsstT~~e~~~~i~~k----lgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~ 81 (184)
...+.+.|++. ++...++.+|..+|+.++...+..+ ++..+ ..+.|-|=.. +.+-+|.++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~-~~~dyvLKV~-----G~~EyL~g~~ 79 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPD-PEDDYVLKVC-----GREEYLLGDH 79 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CH-HHHGEEEEET-----TSSEEE-SSS
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcc-cccCEEEEec-----CceEEeeCCe
Confidence 34689999999 6668999999999999999888777 23321 2226777543 3344665544
No 97
>KOG0005|consensus
Probab=78.32 E-value=5.5 Score=26.25 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=35.5
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.++|.++.|....+.+|+..++.-+-+.|-++.|+.+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp 38 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCc
Confidence 35899999999999999999999999999999999995
No 98
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=77.15 E-value=20 Score=25.28 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=39.5
Q ss_pred eEEEEEEecCCEEEEEEcC-----CCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDG-----STTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vds-----stT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
+++||.+ +|..+.+.++. +.+..++.+.|++.++|. ....|.|...+.
T Consensus 1 l~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~--~~~~~~l~Y~De 53 (91)
T cd06398 1 LVVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS--PDADLSLTYTDE 53 (91)
T ss_pred CEEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC--CCCcEEEEEECC
Confidence 3678888 77789999996 599999999999999998 557799955543
No 99
>KOG3727|consensus
Probab=75.77 E-value=1.3 Score=41.06 Aligned_cols=45 Identities=31% Similarity=0.204 Sum_probs=41.6
Q ss_pred CCCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhh
Q psy5112 136 LSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180 (184)
Q Consensus 136 ~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~ 180 (184)
..+.-|.+-++.+|.|++=+++..+.-|+++++..+||+|.|+.+
T Consensus 271 lnpkyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~ 315 (664)
T KOG3727|consen 271 LNPKYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNH 315 (664)
T ss_pred cccccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999999999999999875
No 100
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=75.54 E-value=8.9 Score=25.90 Aligned_cols=33 Identities=3% Similarity=-0.103 Sum_probs=29.6
Q ss_pred EEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 23 HLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 23 ~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
....|.+.++.++++.|++++=+.|..+-|+..
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~ 40 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPP 40 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 456688899999999999999999999999984
No 101
>PLN02560 enoyl-CoA reductase
Probab=74.61 E-value=12 Score=32.22 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=33.4
Q ss_pred EEEEEEecCCEE---EEEEcCCCCHHHHHHHHHHHhCCCCCCCceeE
Q psy5112 19 SIPVHLLNGAYQ---VTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFA 62 (184)
Q Consensus 19 ~~~V~llDg~~~---~v~vdsstT~~e~~~~i~~klgL~~~~~~gFs 62 (184)
.+.|...+|+.. ++++++++|++|+-+.|+++-+..+.+.....
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~ 48 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLT 48 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEE
Confidence 456667778775 79999999999999999999887532443333
No 102
>KOG1117|consensus
Probab=72.61 E-value=18 Score=35.68 Aligned_cols=69 Identities=19% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCCCeEEEEEEecCC---EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhh
Q psy5112 14 HSLPHSIPVHLLNGA---YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKV 83 (184)
Q Consensus 14 ~~~pi~~~V~llDg~---~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~ 83 (184)
+.--+.+.||..--. ...+.|.++.|+.|++..|-.+=|+.....+.|+.|+.... ++.+|.|...+||
T Consensus 923 qagDfi~eVyveeKepd~~~~ikVs~sm~aEEltneila~r~~~~~~~d~watFEv~e~-~eleRpLh~aekv 994 (1186)
T KOG1117|consen 923 QAGDFIIEVYVEEKEPDCSIIIKVSPSMTAEELTNEILAIRNIIPTKGDIWATFEVIEN-EELERPLHYAEKV 994 (1186)
T ss_pred CCCCEEEEEEEeecCCCcceeEecCccccHHHHHHHHHHhcCCCCCCCCceEEEEEccC-cccccCCchHHHH
Confidence 345678888887666 89999999999999999999998887656788999998752 3457889888884
No 103
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=71.78 E-value=11 Score=25.44 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=29.8
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCc---eeEEE
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVS---GFALF 64 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~---gFsL~ 64 (184)
-+.|.+.+|+...+.+....++++++..|.+.+++...+.. +|.|.
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~ 52 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA 52 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE
Confidence 45566656789999999999999999999999998643333 36665
No 104
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.56 E-value=8.4 Score=34.26 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=37.5
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.|.|+.++|....+.|+.+.|+.++=+.|..+-|......+..-|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy 48 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY 48 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE
Confidence 468899999999999999999999999999998883111224456643
No 105
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=69.32 E-value=27 Score=24.96 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=38.4
Q ss_pred EEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 21 PVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 21 ~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
++...+|.++.+.|+.+.|-.|+..++++..+.. .. +.|....+
T Consensus 16 ~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~--~~--~~lky~Lp 59 (97)
T cd06410 16 QLRYVGGETRIVSVDRSISFKELVSKLSELFGAG--VV--VTLKYQLP 59 (97)
T ss_pred CEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCC--Cc--eEEEEEcC
Confidence 4688999999999999999999999999999988 33 88866665
No 106
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=66.77 E-value=18 Score=29.35 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=28.2
Q ss_pred eEEEEEEecCC-----EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 18 HSIPVHLLNGA-----YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 18 i~~~V~llDg~-----~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
..++|+.++.+ ...+.++...|++|+++.++.++++.+....-.=||+..
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~ 73 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVS 73 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeE
Confidence 35788888544 467889999999999999999999986444455555553
No 107
>KOG1769|consensus
Probab=64.68 E-value=29 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.++|.=-||+...+.|-.+|+.+-+....|++-||.-
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~ 58 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSM 58 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCcc
Confidence 56788999998999999999999999999999999999983
No 108
>KOG4261|consensus
Probab=64.36 E-value=17 Score=35.39 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=43.2
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
++++|..- +-.+++.+.++|++=|.|..|.+|.---+..++.|+||....
T Consensus 4 lsl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de 53 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDE 53 (1003)
T ss_pred eEEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecC
Confidence 46666666 889999999999999999999999888877788999998764
No 109
>KOG3542|consensus
Probab=61.06 E-value=6.4 Score=37.86 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=45.2
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..+++|+=-|.+++-+.|...||++|++....+..+++- ....|||.+..-
T Consensus 758 dqVlrvfk~DQqs~Yi~isKdTtAkeVV~~A~~EF~~Ta-~sd~ySLCEvsV 808 (1283)
T KOG3542|consen 758 DQVLRVFKNDQQSKYIPISKDTTAKEVVQLALQEFNMTA-GSDEYSLCEVSV 808 (1283)
T ss_pred HHHHHHhhccccceeEEEeccccHHHHHHHHHHHhcccc-CCCceeeEEEEe
Confidence 345788889999999999999999999999999999996 668899988764
No 110
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=59.77 E-value=9.4 Score=28.23 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 16 LPHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 16 ~pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~klg 52 (184)
.++.+++++.||+ .-...+++++|++++=+.|...-+
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p 40 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWP 40 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcc
Confidence 4688999999997 467889999999999999985543
No 111
>PTZ00458 acyl CoA binding protein; Provisional
Probab=57.77 E-value=21 Score=25.22 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=27.9
Q ss_pred HHhhhhhhhcCCC--CCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 149 CYQTNQQVVLGRF--PLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 149 y~Q~~~~v~~G~~--p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|.++..-|..-.. +++.++.++|=||.-|+-.|||+
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~ 42 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCN 42 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCC
Confidence 6666666654333 67889999999999999999985
No 112
>KOG4335|consensus
Probab=54.80 E-value=6.1 Score=36.38 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=45.9
Q ss_pred eeEEEEeeeeeecCC-C--CCCChhhHHhHHHhhhhhhhcCC--CCCCHHHHHHHHHH-HHhHhhcCCC
Q psy5112 122 CVQFIYKNRLYFRSL-S--KKETDRERLLLCYQTNQQVVLGR--FPLTKELALELAAL-LSQVCFKQVG 184 (184)
Q Consensus 122 ~~~l~fr~k~f~~~~-~--~~~d~~e~~l~y~Q~~~~v~~G~--~p~~~e~a~~LAAl-~~Q~e~Gd~~ 184 (184)
...+-|||+.|+... + ...+.+ ..+.|.-+...|+.++ |+|.-++-.+++|+ +|-.++|+|.
T Consensus 197 ~~~~~~~rn~~~~~~re~~~~~ee~-a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~ 264 (558)
T KOG4335|consen 197 EPFLQFRRNVFFPKGRELQIIDEEV-ARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQ 264 (558)
T ss_pred ccchHHhhhhhcccCcchhhhHHHH-HHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCc
Confidence 345667777666532 2 222223 6667778999999998 78888999999999 9999999873
No 113
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=54.79 E-value=21 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.9
Q ss_pred cCCEEEEEEcCCCCHHH--HHHHHHHHhCCCC
Q psy5112 26 NGAYQVTGFDGSTTIEE--FLQTLNSEIDCRD 55 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e--~~~~i~~klgL~~ 55 (184)
|.....+.+.++-|..| ++..+|.++||..
T Consensus 14 d~~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 14 DRMRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 55578888999899887 8999999999995
No 114
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=54.46 E-value=20 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=26.7
Q ss_pred EEEcCCCCHHHHHHHHHHH--hCCCCC--CCceeEEEEeCC
Q psy5112 32 TGFDGSTTIEEFLQTLNSE--IDCRDS--NVSGFALFSDDP 68 (184)
Q Consensus 32 v~vdsstT~~e~~~~i~~k--lgL~~~--~~~gFsL~~~~~ 68 (184)
+++++++|.+|+++.++++ +.|+.+ ...+=.||...+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~p 41 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSP 41 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCC
Confidence 5799999999999999999 888854 234455777654
No 115
>KOG2689|consensus
Probab=51.24 E-value=30 Score=29.52 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..=.+-|+++||+++...|.+..|...|-.-|..+.|... ++ |++-...|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~-~P--~~f~t~fP 258 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGL-DP--YSFHTGFP 258 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCC-CC--eeeecCCC
Confidence 3457889999999999999999999999999998888774 23 77654443
No 116
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=51.16 E-value=22 Score=21.87 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEecCCEEEEEEcCCCCHHHHHHHHH
Q psy5112 21 PVHLLNGAYQVTGFDGSTTIEEFLQTLN 48 (184)
Q Consensus 21 ~V~llDg~~~~v~vdsstT~~e~~~~i~ 48 (184)
-|+++||+. +.+...+|++++...+.
T Consensus 2 ~~~~~~g~~--~~~~~~~t~~~~~~~~~ 27 (60)
T cd01668 2 YVFTPKGEI--IELPAGATVLDFAYAIH 27 (60)
T ss_pred EEECCCCCE--EEcCCCCCHHHHHHHHC
Confidence 478999886 55789999999777553
No 117
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=50.47 E-value=14 Score=27.18 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=33.3
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++.+++.. ||....+.+|+.+|..=+....++++||..
T Consensus 15 ~~~~v~~~I-ng~~~~~LvDTGAs~s~Is~~~a~~lgl~~ 53 (124)
T cd05479 15 PMLYINVEI-NGVPVKAFVDSGAQMTIMSKACAEKCGLMR 53 (124)
T ss_pred eEEEEEEEE-CCEEEEEEEeCCCceEEeCHHHHHHcCCcc
Confidence 356666665 788999999999999999999999999984
No 118
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=49.96 E-value=48 Score=23.10 Aligned_cols=37 Identities=8% Similarity=0.267 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
-..+.|+++.|+++++..|.++|+|.+ .+..-||+..
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~~--~~slflyvnn 53 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLKA--SDSLFLYINN 53 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCCc--cCeEEEEECC
Confidence 456778999999999999999999984 3445577643
No 119
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=49.71 E-value=86 Score=21.90 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=37.4
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
+|+++ +|......+|.++|..++++.+.+-..+. ....|.+.-.+.
T Consensus 3 ~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~--~~q~ft~kw~DE 48 (83)
T cd06404 3 VKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFH--NDQPFTLKWIDE 48 (83)
T ss_pred EEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCC--CCCcEEEEEECC
Confidence 44444 67788899999999999999999999998 557799965543
No 120
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=49.15 E-value=20 Score=26.27 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=38.6
Q ss_pred eccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE
Q psy5112 7 LLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL 63 (184)
Q Consensus 7 ~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL 63 (184)
|.|++..| +.+.+.+ ||....+.+|+..|.--+...++++|||+.. ..++..
T Consensus 4 i~~~~~g~---~~v~~~I-nG~~~~flVDTGAs~t~is~~~A~~Lgl~~~-~~~~~~ 55 (121)
T TIGR02281 4 LAKDGDGH---FYATGRV-NGRNVRFLVDTGATSVALNEEDAQRLGLDLN-RLGYTV 55 (121)
T ss_pred EEEcCCCe---EEEEEEE-CCEEEEEEEECCCCcEEcCHHHHHHcCCCcc-cCCceE
Confidence 44444333 4667766 8889999999999988899999999999952 234554
No 121
>COG4895 Uncharacterized conserved protein [Function unknown]
Probab=46.99 E-value=7.5 Score=25.11 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=18.8
Q ss_pred eeeeccCCCCCCCCeEEEEEEecCCEE
Q psy5112 4 LSILLKNPYHHSLPHSIPVHLLNGAYQ 30 (184)
Q Consensus 4 ~~~~~~~p~~~~~pi~~~V~llDg~~~ 30 (184)
.+||+|.|. .|+-++|.+.||+.-
T Consensus 34 k~iLT~S~~---HPHGIKVrL~dGqvG 57 (63)
T COG4895 34 KAILTRSPS---HPHGIKVRLTDGQVG 57 (63)
T ss_pred HHHHhCCCC---CCCceEEEeecCccc
Confidence 356777765 489999999999863
No 122
>PHA01083 hypothetical protein
Probab=45.12 E-value=24 Score=27.31 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=22.4
Q ss_pred HhhhhhhhcC-CCCCCHHHHHHHHHH
Q psy5112 150 YQTNQQVVLG-RFPLTKELALELAAL 174 (184)
Q Consensus 150 ~Q~~~~v~~G-~~p~~~e~a~~LAAl 174 (184)
.|.+.++..| +-|.+.+.|++||..
T Consensus 30 ~q~IS~~R~G~r~~i~de~A~~LAe~ 55 (149)
T PHA01083 30 PQKISKMRTGVRTYISDEEAIFLAES 55 (149)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4788999999 999999999999865
No 123
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=45.04 E-value=68 Score=23.48 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
-..+.|++..|++++...|-.+|+|. .....-||+.
T Consensus 42 k~KflVp~~~tv~~f~~~irk~l~l~--~~~slfl~Vn 77 (112)
T cd01611 42 KKKYLVPSDLTVGQFVYIIRKRIQLR--PEKALFLFVN 77 (112)
T ss_pred CceEEecCCCCHHHHHHHHHHHhCCC--ccceEEEEEC
Confidence 46678999999999999999999999 4455556653
No 124
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=44.62 E-value=86 Score=22.55 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=30.7
Q ss_pred CCCeEEEEEEecC-CEEEEEEcCCCCHHHHHHHHHHHh
Q psy5112 15 SLPHSIPVHLLNG-AYQVTGFDGSTTIEEFLQTLNSEI 51 (184)
Q Consensus 15 ~~pi~~~V~llDg-~~~~v~vdsstT~~e~~~~i~~kl 51 (184)
...+.+.|++.+. ...++.++...|+.++.+.+..+.
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~ 52 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM 52 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH
Confidence 3578888988774 469999999999999999888773
No 125
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=43.89 E-value=31 Score=24.09 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=35.3
Q ss_pred eEEEEEEecCCEEEEEEcC--CCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 18 HSIPVHLLNGAYQVTGFDG--STTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vds--stT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
++|||..++|....-.|++ .-+.+|+++.|.+-|-=. ....|- |++
T Consensus 1 lVIRIk~p~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~a--T~tAFe-YED 48 (91)
T cd06395 1 LVIRIKIPNGGAVDWTVQSGPQLLFRDVLDVIGQVLPEA--TTTAFE-YED 48 (91)
T ss_pred CeEEEeCCCCCcccccccCcccccHHHHHHHHHHhcccc--ccccee-ecc
Confidence 5899999999999888995 457999999999986544 444454 443
No 126
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=40.34 E-value=64 Score=22.36 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=34.0
Q ss_pred EEEEEEecCCEEEEEEcC--CCCHHHHHHHHHHHhCCCCCCCceeEE-EEeC
Q psy5112 19 SIPVHLLNGAYQVTGFDG--STTIEEFLQTLNSEIDCRDSNVSGFAL-FSDD 67 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vds--stT~~e~~~~i~~klgL~~~~~~gFsL-~~~~ 67 (184)
.+++.+ +|....+.+++ ++|-.++.+.|+.+.+|. .|.| |.+.
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-----~f~lKYlDd 47 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN-----DIQIKYVDE 47 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-----cceeEEEcC
Confidence 355555 56677788888 889999999999999998 3888 6554
No 127
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=40.22 E-value=70 Score=26.52 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=35.5
Q ss_pred CCCCCCCeEEEEEEecCC------EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 11 PYHHSLPHSIPVHLLNGA------YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 11 p~~~~~pi~~~V~llDg~------~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
|+..+..+.+-+.+-|-. .-.+.|+.++++.+++..|++++|+. .-...-||++..
T Consensus 62 ~~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p--~~t~l~lyEEi~ 123 (249)
T PF12436_consen 62 PYDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLP--PDTPLLLYEEIK 123 (249)
T ss_dssp ---TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT----TT--EEEEEEEE
T ss_pred CCCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCC--CCCceEEEEEec
Confidence 344444455555544444 34577899999999999999999998 557799999865
No 128
>PF14039 YusW: YusW-like protein
Probab=37.33 E-value=40 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=28.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE
Q psy5112 31 VTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL 63 (184)
Q Consensus 31 ~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL 63 (184)
.+.+++.|+=.++.+.|-..++|.+ ++..|-|
T Consensus 55 ~L~~~~~t~~~evi~~Vl~~f~Ld~-dy~~fel 86 (92)
T PF14039_consen 55 ELSFDSDTSEEEVIDQVLKAFNLDP-DYQEFEL 86 (92)
T ss_pred hCCCCCCCChHHHHHHHHHHhCCCc-cceEEEE
Confidence 5678999999999999999999997 7877776
No 129
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=36.89 E-value=57 Score=21.43 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=21.3
Q ss_pred EEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 20 IPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 20 ~~V~llDg~--~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
++|.+ ||. ...+++++.+|++|+++.+ |+.
T Consensus 5 m~v~v-ng~~~~~~~~~~~~~tv~~ll~~l----~~~ 36 (70)
T PRK08364 5 IRVKV-IGRGIEKEIEWRKGMKVADILRAV----GFN 36 (70)
T ss_pred EEEEE-eccccceEEEcCCCCcHHHHHHHc----CCC
Confidence 34444 555 5678889999999988655 666
No 130
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=36.33 E-value=67 Score=24.01 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=28.5
Q ss_pred EEE-EEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 30 QVT-GFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 30 ~~v-~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
+.+ .|.+..|+++++..|-.+|+|.+ .. +-||+..
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~--~k-~flfVnn 77 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSA--KK-VTLAIEG 77 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCh--hH-EEEEECC
Confidence 335 69999999999999999999994 45 6677644
No 131
>KOG2086|consensus
Probab=35.86 E-value=1e+02 Score=27.48 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=41.5
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
+|.|++.||+-....++-+-|+.++-.-|+.-=.-- ....|-|....+
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~--~~~~F~L~~~FP 354 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGD--SSTYFILMMAFP 354 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCC--cCCceeeeecCC
Confidence 689999999999999999999999999999765555 456699988776
No 132
>PRK05783 hypothetical protein; Provisional
Probab=35.53 E-value=76 Score=22.12 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=27.9
Q ss_pred CCEEEEEEcCCC--CHHHHHHHHHHHhCCCCCCCceeE
Q psy5112 27 GAYQVTGFDGST--TIEEFLQTLNSEIDCRDSNVSGFA 62 (184)
Q Consensus 27 g~~~~v~vdsst--T~~e~~~~i~~klgL~~~~~~gFs 62 (184)
|....+.+|..+ .+.+.++.+|++|-|.++..+-|-
T Consensus 41 GK~iel~l~~~~~e~a~~~v~~mc~~LrLaNpVIe~y~ 78 (84)
T PRK05783 41 GKYLVFKIEANSPEEAKELALKIAREGRLYNPIVHKIV 78 (84)
T ss_pred eEEEEEEEcCCCHHHHHHHHHHHHHhcCcCCceeEEEE
Confidence 677788887764 678999999999988865555554
No 133
>PF13650 Asp_protease_2: Aspartyl protease
Probab=35.51 E-value=26 Score=23.10 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=27.3
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
||....+.+|+..+.-=+...+++++|+..
T Consensus 6 ng~~~~~liDTGa~~~~i~~~~~~~l~~~~ 35 (90)
T PF13650_consen 6 NGKPVRFLIDTGASISVISRSLAKKLGLKP 35 (90)
T ss_pred CCEEEEEEEcCCCCcEEECHHHHHHcCCCC
Confidence 788999999999998888899999999984
No 134
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=35.42 E-value=96 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=20.8
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHh
Q psy5112 27 GAYQVTGFDGSTTIEEFLQTLNSEI 51 (184)
Q Consensus 27 g~~~~v~vdsstT~~e~~~~i~~kl 51 (184)
-...+++++..+|++++.+.+..+-
T Consensus 18 ~~~~~~~~~~~~tv~~L~~~l~~~~ 42 (82)
T PLN02799 18 VSDMTLELPAGSTTADCLAELVAKF 42 (82)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHC
Confidence 3568888989999999999997664
No 135
>PRK06437 hypothetical protein; Provisional
Probab=33.97 E-value=65 Score=21.07 Aligned_cols=32 Identities=6% Similarity=0.270 Sum_probs=24.2
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
++..+.+.++..+|++|+++. ||+.+ .+.++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~---~~vaV~ 40 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDE---EEYVVI 40 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCC---ccEEEE
Confidence 556689999999999998855 58863 457766
No 136
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=33.67 E-value=82 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=25.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 30 QVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 30 ~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
..+.|....|+++++..|-.+|.|. ....+-||+
T Consensus 35 ~KfLvp~~~tv~qf~~~ir~rl~l~--~~~alfl~V 68 (104)
T PF02991_consen 35 KKFLVPKDLTVGQFVYIIRKRLQLS--PEQALFLFV 68 (104)
T ss_dssp SEEEEETTSBHHHHHHHHHHHTT----TTS-EEEEB
T ss_pred cEEEEcCCCchhhHHHHhhhhhcCC--CCceEEEEE
Confidence 4467899999999999999999999 445566664
No 137
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=33.44 E-value=26 Score=25.84 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=33.9
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 28 AYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 28 ~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
+...-.+|..-|..|+++.+++|-+|...+..|||.-+.++
T Consensus 47 ~vI~~hidaGIs~~~AVN~LVeKY~LvRiD~~gFs~~~qsP 87 (114)
T PF06755_consen 47 TVIQEHIDAGISPADAVNFLVEKYELVRIDRNGFSWQEQSP 87 (114)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhhcCCcccCccCCCc
Confidence 33444578889999999999999999988999999776665
No 138
>PF07358 DUF1482: Protein of unknown function (DUF1482); InterPro: IPR009954 This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.40 E-value=1.3e+02 Score=19.50 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=29.2
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHH
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~k 50 (184)
.+++.|.+++|....+-++-.-|=++++....++
T Consensus 3 ALVltV~~~~G~~~d~v~gvy~se~~C~~a~~eQ 36 (57)
T PF07358_consen 3 ALVLTVCYLTGECEDVVVGVYDSEQQCLAAADEQ 36 (57)
T ss_pred eeEEEEEEecCCCeEEEeecccCHHHHHHHHHhc
Confidence 4689999999999999999999988888776654
No 139
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=32.99 E-value=1.2e+02 Score=21.71 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=34.6
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
.|-++|.=-||+..-+.|-.+||.+-+++..|.+.|=.
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~ 61 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN 61 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC
Confidence 46678888899999999999999999999999999966
No 140
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=32.87 E-value=38 Score=22.28 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=27.4
Q ss_pred ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 25 LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 25 lDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+|......+|+..|..=+-..++++||+..
T Consensus 15 I~g~~~~alvDtGat~~fis~~~a~rLgl~~ 45 (72)
T PF13975_consen 15 IGGVQVKALVDTGATHNFISESLAKRLGLPL 45 (72)
T ss_pred ECCEEEEEEEeCCCcceecCHHHHHHhCCCc
Confidence 3566777999999999999999999999996
No 141
>PF12859 Apc1: Anaphase-promoting complex subunit 1
Probab=32.77 E-value=87 Score=22.33 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=20.4
Q ss_pred ceeeeeccCCCCCCCCeEEEEEEecCCEEEEEEcC
Q psy5112 2 EVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDG 36 (184)
Q Consensus 2 e~~~~~~~~p~~~~~pi~~~V~llDg~~~~v~vds 36 (184)
|++-|++++ .++||+.||...++.+--
T Consensus 1 ~~LcV~l~~--------~~~vy~~~G~~~~v~LPF 27 (105)
T PF12859_consen 1 RALCVVLKD--------QAHVYFPSGESYTVPLPF 27 (105)
T ss_pred CEEEEEECC--------EEEEEeCCCCEEEEEece
Confidence 456677766 789999999987776653
No 142
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=32.54 E-value=1.6e+02 Score=19.89 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=34.9
Q ss_pred eEEEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 18 HSIPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 18 i~~~V~llDg~--~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
+.+.|...+-. ..+..++.+.|++|+-+.|-..-|+.. +. .-|+..
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~-~~--m~L~l~ 49 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPP-SD--MRLQLK 49 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-T-TT--EEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCc-cc--EEEEEE
Confidence 34566666663 888999999999999999999999996 33 555444
No 143
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=32.20 E-value=88 Score=21.42 Aligned_cols=36 Identities=11% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCC--CHHHHHHHHHHHhCCCCCCCceeEE
Q psy5112 27 GAYQVTGFDGST--TIEEFLQTLNSEIDCRDSNVSGFAL 63 (184)
Q Consensus 27 g~~~~v~vdsst--T~~e~~~~i~~klgL~~~~~~gFsL 63 (184)
|....+.++..+ .+.+.++.+|++| |.++-.+.|.+
T Consensus 39 GK~~~l~~~~~~~e~a~~~v~~i~~~L-LaNpvie~y~i 76 (80)
T PF02700_consen 39 GKYIELELEADDEEEAEEQVEEICEKL-LANPVIEDYEI 76 (80)
T ss_dssp EEEEEEEEE-SSHHHHHHHHHHHHHHT-TS-TTTEEEEE
T ss_pred EEEEEEEEeCCCHHHHHHHHHHHHHHh-cCCCceEEEEE
Confidence 556666776664 4789999999999 98766666664
No 144
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=31.34 E-value=72 Score=24.06 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=24.8
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHH
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~ 46 (184)
..+-.++|..+||....+ +...||+|++..
T Consensus 13 ~~~~~vkvv~~~G~v~~~--~~pv~a~evm~~ 42 (181)
T PF14009_consen 13 SSAATVKVVHPDGKVEEF--KRPVTAAEVMLE 42 (181)
T ss_pred CCCceEEEEcCCCcEEEe--CCCcCHHHHHHH
Confidence 346789999999988655 889999999875
No 145
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=29.54 E-value=97 Score=22.63 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=20.7
Q ss_pred EEEE--ecCCEEEEEEcCCCCHHHHHHH
Q psy5112 21 PVHL--LNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 21 ~V~l--lDg~~~~v~vdsstT~~e~~~~ 46 (184)
+|.| ++|+.+++.+...+|.-+++..
T Consensus 2 ~V~fi~~~G~~~~v~~~~G~tLl~a~~~ 29 (117)
T PLN02593 2 SVTFVDKDGEERTVKAPVGMSLLEAAHE 29 (117)
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 4555 8999999999998888877655
No 146
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=29.48 E-value=2e+02 Score=20.13 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
...+.|+++.|.+.++.-+.++|++.+ .+.-=||...
T Consensus 17 ~~k~kI~~~~~f~~vi~fLrk~Lk~~~--~~slFlYin~ 53 (87)
T PF04110_consen 17 QKKFKISASQTFATVIAFLRKKLKLKP--SDSLFLYINN 53 (87)
T ss_dssp --EEEEETTSBTHHHHHHHHHHCT------SS-EEEEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCCcc--CCeEEEEEcC
Confidence 467899999999999999999999973 3434456543
No 147
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=29.39 E-value=85 Score=21.74 Aligned_cols=38 Identities=18% Similarity=-0.024 Sum_probs=30.3
Q ss_pred HhHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCC
Q psy5112 146 LLLCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQV 183 (184)
Q Consensus 146 ~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~ 183 (184)
...|.|+..+|..=.=.-+.++.++|=||.=|.-.||-
T Consensus 3 s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~ 40 (87)
T COG4281 3 STRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDN 40 (87)
T ss_pred hhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcccccc
Confidence 34688999998874444567889999999999999884
No 148
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=29.10 E-value=92 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 27 GAYQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 27 g~~~~v~vdsstT~~e~~~~i~~klg 52 (184)
.....+.++..+|++|+++.+..+.+
T Consensus 15 ~~~~~~~~~~~~tv~~ll~~l~~~~~ 40 (80)
T cd00754 15 KDEEELELPEGATVGELLDALEARYP 40 (80)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHCc
Confidence 34577888889999999999998754
No 149
>KOG4146|consensus
Probab=28.98 E-value=1.7e+02 Score=20.99 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=32.8
Q ss_pred CCeEEEEEEecCCEE--------EEEE---cCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQ--------VTGF---DGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~--------~v~v---dsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.++.++|.|..|... .+.. .+.+|+++++..++.++-=++ + +||....
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r-~----~lFi~~g 61 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETR-D----SLFIHHG 61 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCC-c----ceEeeCC
Confidence 467889999888632 2222 378999999999999864442 2 2776553
No 150
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=27.96 E-value=75 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=16.0
Q ss_pred CCeEEEEEEecCCEEEEEE
Q psy5112 16 LPHSIPVHLLNGAYQVTGF 34 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~v 34 (184)
....++|.++||+...+.+
T Consensus 41 ~~~~V~VtypDgS~~~V~v 59 (65)
T PF08428_consen 41 KTGKVKVTYPDGSTDEVPV 59 (65)
T ss_pred EEEEEEEEcCCCCEEEEEe
Confidence 3678999999999987765
No 151
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=27.41 E-value=1.2e+02 Score=23.10 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=29.9
Q ss_pred EEEEEecCCEE--EEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 20 IPVHLLNGAYQ--VTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 20 ~~V~llDg~~~--~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.|+=++|... .+.+|+.+...=+.+.+|++|+|..
T Consensus 1 v~V~n~~g~~~~~~~LlDsGSq~SfIt~~la~~L~L~~ 38 (164)
T PF05585_consen 1 VNVFNPNGNQVEARALLDSGSQRSFITESLANKLNLPG 38 (164)
T ss_pred CEEECCCCCEEEEEEEEecCCchhHHhHHHHHHhCCCC
Confidence 35666788754 4589999999999999999999994
No 152
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=27.40 E-value=88 Score=21.10 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=19.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 28 AYQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 28 ~~~~v~vdsstT~~e~~~~i~~klg 52 (184)
...++.++ .+|++|+.+.++++.+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p 39 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYP 39 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCc
Confidence 45677776 8999999999998864
No 153
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=26.81 E-value=1.8e+02 Score=20.23 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=20.8
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHH
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQ 45 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~ 45 (184)
+++.+++|..+++.+++..|.-|++.
T Consensus 5 v~~~~~~~~~~~~~~~~g~tLLda~~ 30 (97)
T TIGR02008 5 VTLVNPDGGEETIECPDDQYILDAAE 30 (97)
T ss_pred EEEEECCCCEEEEEECCCCcHHHHHH
Confidence 44445899999999999999888754
No 154
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=26.51 E-value=82 Score=20.41 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.3
Q ss_pred cCCEEEEEEcCCCCHHH--HHHHHHHHhCCC
Q psy5112 26 NGAYQVTGFDGSTTIEE--FLQTLNSEIDCR 54 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e--~~~~i~~klgL~ 54 (184)
|+....+.+.++.|..| ++-.+|..+||.
T Consensus 14 s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~ 44 (60)
T cd02640 14 SDDIRDMVFSPEFSKEERALIHQIAQKYGLK 44 (60)
T ss_pred CCccceEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 33478888999888776 999999999999
No 155
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=26.30 E-value=1e+02 Score=28.05 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.9
Q ss_pred EEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 21 PVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 21 ~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+-+....+|.-|.-.||+|+++.+|.-++|++
T Consensus 261 ~i~~~~~g~v~I~tD~melagdlVQsla~fl~i~~ 295 (431)
T PF14782_consen 261 CISINNSGEVTIRTDDMELAGDLVQSLASFLNITE 295 (431)
T ss_pred EEEecCCceEEEEeCcHHHHHHHHHHHHHHhCCcc
Confidence 33444434778888888999999999999999994
No 156
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=24.89 E-value=83 Score=22.01 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=18.6
Q ss_pred CeEEEEEEecCCEEEEEEcCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGST 38 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsst 38 (184)
--.+++.|+||+.+.+.++..-
T Consensus 48 ~~~c~l~~pDG~~~~i~i~~p~ 69 (85)
T PF15016_consen 48 LGWCKLTFPDGQQVLIQIEHPG 69 (85)
T ss_pred CCEEEEEccCCCEEEEEccCCc
Confidence 4578999999999999998763
No 157
>KOG0011|consensus
Probab=24.32 E-value=1.2e+02 Score=26.69 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=33.6
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
+.+.|+.+.|+.-++.+.++.|+.++-..|....|=.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~d 37 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPD 37 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCC
Confidence 4688999999999999999999999999999988844
No 158
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=24.04 E-value=2e+02 Score=19.85 Aligned_cols=33 Identities=3% Similarity=0.007 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeE
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFA 62 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFs 62 (184)
+.++.+-...+-+++...|+++|++.. ..--.|
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~-~~~~LS 40 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQA-QRGQLS 40 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCCh-hhcEEE
Confidence 578888899999999999999999996 343444
No 159
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=23.50 E-value=2.2e+02 Score=18.62 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=30.8
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
.|-+..|...++....+.++...++.++++.+..+=-+.
T Consensus 29 ~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~I~ 67 (84)
T PF13732_consen 29 LPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGIIR 67 (84)
T ss_pred CCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCCee
Confidence 366777887777768899999999999999998873333
No 160
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=23.48 E-value=1.6e+02 Score=19.83 Aligned_cols=34 Identities=3% Similarity=0.162 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCC--HHHHHHHHHHHhCCCCCCCceeE
Q psy5112 28 AYQVTGFDGSTT--IEEFLQTLNSEIDCRDSNVSGFA 62 (184)
Q Consensus 28 ~~~~v~vdsstT--~~e~~~~i~~klgL~~~~~~gFs 62 (184)
....+.+|+... +.+.++.+|+++ |.++-.+.|+
T Consensus 40 k~~~l~~~~~~~~~a~~~v~~i~~~l-L~Npvie~~~ 75 (80)
T TIGR00302 40 KVIELTIEADSEEAVEREVEEMCEKL-LANPVIHDYD 75 (80)
T ss_pred EEEEEEEcCCChhhHHHHHHHHHHHh-cCCceeeEEE
Confidence 344444454443 677899999999 8865555555
No 161
>KOG3878|consensus
Probab=23.01 E-value=67 Score=28.40 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 160 RFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 160 ~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
.++++.|+-+.|-|+.-|+.+|.||
T Consensus 50 a~h~~YEd~lKLial~kQv~~Gp~n 74 (469)
T KOG3878|consen 50 AIHLSYEDNLKLIALKKQVALGPFN 74 (469)
T ss_pred ccCCChhhhhhhhhhHhhhhcCCCC
Confidence 4778899999999999999999986
No 162
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=22.96 E-value=91 Score=20.54 Aligned_cols=25 Identities=44% Similarity=0.680 Sum_probs=18.2
Q ss_pred eeeeeccCCCCCCCCeEEEEEEecCCEE
Q psy5112 3 VLSILLKNPYHHSLPHSIPVHLLNGAYQ 30 (184)
Q Consensus 3 ~~~~~~~~p~~~~~pi~~~V~llDg~~~ 30 (184)
|..||++-|.| |.-|+|.|.||..-
T Consensus 32 V~diLT~s~~H---p~GIKVrL~dG~VG 56 (62)
T TIGR03833 32 VKDILTNSPTH---PHGIKVRLEDGQVG 56 (62)
T ss_pred hhhhhcCCCCC---CCceEEEEecCCee
Confidence 34566666554 88999999999853
No 163
>KOG4248|consensus
Probab=22.90 E-value=1e+02 Score=31.19 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=34.8
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
-++|+.+|....+|.|+-..|++++-+.+..+.+|.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~ 39 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP 39 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccc
Confidence 389999999999999999999999999999999999
No 164
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.65 E-value=1.1e+02 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=23.9
Q ss_pred cCCEEEEEEcCCCCHHH--HHHHHHHHhCCCC
Q psy5112 26 NGAYQVTGFDGSTTIEE--FLQTLNSEIDCRD 55 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e--~~~~i~~klgL~~ 55 (184)
++....+.+.++.|..| ++..+|.++||..
T Consensus 13 ~~~~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 13 ASDNEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred cCcccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 33367788888777666 9999999999993
No 165
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=22.40 E-value=1.2e+02 Score=19.51 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klg 52 (184)
...+.+.+.+|++|+++.++.+.+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p 36 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYP 36 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTG
T ss_pred CeEEecCCCCcHHHHHHHHHhhcc
Confidence 678899999999999999988864
No 166
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=21.97 E-value=1.4e+02 Score=21.83 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=26.4
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 26 Dg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+-..+++.|.+++|++++=..|.+++|+.+
T Consensus 13 ~~~~~~L~V~~~~TVg~LK~lImQ~f~V~P 42 (107)
T cd01795 13 VRGEKALLVSANQTLKELKIQIMHAFSVAP 42 (107)
T ss_pred CCCCceEEeCccccHHHHHHHHHHHhcCCc
Confidence 344678889999999999999999999996
No 167
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=21.05 E-value=1.5e+02 Score=19.65 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=21.5
Q ss_pred cCCEEEEEEcCC-CCHHHHHHHHHHHhC
Q psy5112 26 NGAYQVTGFDGS-TTIEEFLQTLNSEID 52 (184)
Q Consensus 26 Dg~~~~v~vdss-tT~~e~~~~i~~klg 52 (184)
+.+...++++.. +|++++.+.+..+.+
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p 41 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGP 41 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCc
Confidence 344567888866 999999999998864
No 168
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=21.01 E-value=95 Score=19.97 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCHHH--HHHHHHHHhCCC
Q psy5112 28 AYQVTGFDGSTTIEE--FLQTLNSEIDCR 54 (184)
Q Consensus 28 ~~~~v~vdsstT~~e--~~~~i~~klgL~ 54 (184)
....+.+.++.|..| ++-.+|+++||.
T Consensus 16 ~~~~l~F~p~ls~~eR~~vH~lA~~~gL~ 44 (60)
T cd02641 16 KATELEFPPTLSSHDRLLVHELAEELGLR 44 (60)
T ss_pred CcCcEECCCCCCHHHHHHHHHHHHHcCCc
Confidence 337788888777766 899999999999
No 169
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=20.62 E-value=1.3e+02 Score=20.26 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=33.5
Q ss_pred EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 24 LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 24 llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
..||....+.+|+.+++.=+.+..+.++|+.........+...
T Consensus 6 ~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a 48 (91)
T cd05484 6 LVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTA 48 (91)
T ss_pred EECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEec
Confidence 4689999999999999999999999999987433333444433
No 170
>KOG1363|consensus
Probab=20.52 E-value=1.5e+02 Score=27.19 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=39.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.++.+.|.+++|+.....+..+++...+...|.... . ....|++-...|
T Consensus 382 ~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~~--~--~~~e~~~~~~fP 430 (460)
T KOG1363|consen 382 EAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSNG--F--HPEEYSLNTSFP 430 (460)
T ss_pred cceeeEEECCCCCeeeeeeecccchhHHHHHHHhcc--C--CchhhccccCCC
Confidence 578999999999999999999999999999888776 2 334566654443
Done!