Query psy5112
Match_columns 184
No_of_seqs 106 out of 393
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:34:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3au4_A Myosin-X; protein-prote 100.0 1.4E-31 4.9E-36 242.6 15.0 154 2-184 207-360 (555)
2 3pvl_A Myosin VIIA isoform 1; 100.0 2.1E-31 7.2E-36 246.0 12.7 156 1-184 253-410 (655)
3 3qij_A Protein 4.1; cytoskelet 100.0 2.7E-30 9.2E-35 218.3 12.1 135 15-184 15-149 (296)
4 4dxa_B KREV interaction trappe 100.0 4.3E-30 1.5E-34 219.0 12.7 146 16-184 4-153 (322)
5 1h4r_A Merlin; FERM, neurofibr 100.0 9.4E-30 3.2E-34 215.7 12.9 145 1-184 10-155 (314)
6 1ef1_A Moesin; membrane, FERM 100.0 2.7E-29 9.3E-34 210.8 13.6 134 17-184 1-135 (294)
7 3ivf_A Talin-1; FERM domain, c 99.9 2.1E-27 7.3E-32 205.6 13.9 137 15-184 83-222 (371)
8 2i1j_A Moesin; FERM, coiled-co 99.9 5.2E-27 1.8E-31 213.9 13.7 135 16-184 3-138 (575)
9 2al6_A Focal adhesion kinase 1 99.9 4.8E-27 1.6E-31 204.2 9.6 142 16-184 6-154 (375)
10 4eku_A Protein-tyrosine kinase 99.9 1.5E-23 5.1E-28 183.4 10.3 143 17-184 21-174 (392)
11 2j0j_A Focal adhesion kinase 1 99.7 1.6E-18 5.3E-23 159.7 8.8 141 17-184 7-154 (656)
12 1wgr_A Growth factor receptor- 99.5 4E-14 1.4E-18 101.4 7.4 91 13-133 5-95 (100)
13 4f7g_A Talin-1; alpha-helix bu 99.3 4.3E-12 1.5E-16 102.3 5.1 47 138-184 22-68 (222)
14 2kc2_A Talin-1, F1; FERM, adhe 99.2 3.3E-12 1.1E-16 95.3 3.5 103 19-135 13-127 (128)
15 4gmv_A RAS-associated and plec 98.9 1.9E-09 6.4E-14 90.3 7.7 85 16-130 30-114 (281)
16 3hk0_A Growth factor receptor- 98.6 7.3E-08 2.5E-12 79.6 7.5 83 16-130 7-89 (256)
17 3tca_A Amyloid beta A4 precurs 98.4 6E-07 2E-11 73.8 8.1 73 16-106 33-105 (291)
18 2cs4_A Protein C12ORF2; GTP bi 98.1 1.8E-06 6.2E-11 60.8 3.1 82 15-130 5-87 (95)
19 2uwq_A Apoptosis-stimulating o 98.0 7.3E-06 2.5E-10 56.6 5.4 80 15-129 4-85 (86)
20 1wxa_A Afadin, AF-6 protein; R 97.4 0.00057 1.9E-08 49.7 7.0 67 16-82 8-86 (116)
21 3ddc_B RAS association domain- 97.0 0.0013 4.4E-08 50.4 5.7 60 20-82 79-141 (163)
22 2c5l_C Phosphoinositide-specif 96.9 0.0028 9.7E-08 46.1 6.7 73 18-105 8-96 (117)
23 3ivf_A Talin-1; FERM domain, c 96.7 0.0034 1.2E-07 53.6 7.2 63 16-80 2-65 (371)
24 1wgy_A RAP guanine nucleotide 96.1 0.016 5.4E-07 41.3 6.4 62 14-81 6-68 (104)
25 3dbh_I NEDD8; cell cycle, acti 96.1 0.02 6.8E-07 38.3 6.6 47 9-55 4-50 (88)
26 2dhz_A RAP guanine nucleotide 96.0 0.013 4.4E-07 42.8 5.7 64 15-81 7-74 (120)
27 4hcn_B Polyubiquitin, ubiquiti 95.7 0.021 7.2E-07 39.5 5.5 46 10-55 15-60 (98)
28 3phx_B Ubiquitin-like protein 95.6 0.029 1E-06 36.8 5.7 40 16-55 3-42 (79)
29 2bye_A Phospholipase C, epsilo 95.4 0.026 9E-07 40.4 5.4 75 16-105 8-93 (110)
30 2ojr_A Ubiquitin; lanthide-bin 95.4 0.04 1.4E-06 39.0 6.4 54 2-55 16-73 (111)
31 3v6c_B Ubiquitin; structural g 95.4 0.046 1.6E-06 37.0 6.4 46 10-55 10-55 (91)
32 2al3_A TUG long isoform; TUG U 95.3 0.021 7.1E-07 39.6 4.3 45 18-65 10-54 (90)
33 2pjh_A Protein NPL4, nuclear p 95.3 0.0074 2.5E-07 40.7 2.0 49 16-68 3-51 (80)
34 3mtn_B UBA80, ubcep1, ubiquiti 95.3 0.039 1.3E-06 36.4 5.6 39 17-55 3-41 (85)
35 3a9j_A Ubiquitin; protein comp 95.1 0.042 1.4E-06 35.3 5.3 45 18-65 1-45 (76)
36 2dzi_A Ubiquitin-like protein 95.1 0.067 2.3E-06 34.9 6.3 40 16-55 6-45 (81)
37 1ndd_A NEDD8, protein (ubiquit 95.1 0.036 1.2E-06 35.6 4.9 44 18-64 1-44 (76)
38 3cf6_E RAP guanine nucleotide 95.0 0.064 2.2E-06 49.6 8.1 57 8-68 343-399 (694)
39 2kk8_A Uncharacterized protein 95.0 0.076 2.6E-06 35.7 6.5 49 13-64 6-54 (84)
40 2uyz_B Small ubiquitin-related 94.9 0.043 1.5E-06 36.0 4.9 39 17-55 3-41 (79)
41 4dwf_A HLA-B-associated transc 94.9 0.061 2.1E-06 36.2 5.8 40 16-55 4-43 (90)
42 3n3k_B Ubiquitin; hydrolase, p 94.9 0.038 1.3E-06 36.5 4.6 46 17-65 3-48 (85)
43 4eew_A Large proline-rich prot 94.7 0.07 2.4E-06 35.7 5.7 41 15-55 15-55 (88)
44 1sif_A Ubiquitin; hydrophobic 94.7 0.057 2E-06 36.4 5.2 43 13-55 5-47 (88)
45 1wh3_A 59 kDa 2'-5'-oligoadeny 94.7 0.078 2.7E-06 35.3 5.9 40 16-55 6-45 (87)
46 3plu_A Ubiquitin-like modifier 94.5 0.065 2.2E-06 37.3 5.1 41 15-55 19-59 (93)
47 2hj8_A Interferon-induced 17 k 94.5 0.083 2.9E-06 35.6 5.7 39 17-55 4-42 (88)
48 1yx5_B Ubiquitin; proteasome, 94.5 0.071 2.4E-06 36.6 5.3 38 18-55 1-38 (98)
49 2kdi_A Ubiquitin, vacuolar pro 94.4 0.089 3E-06 37.5 6.0 43 13-55 5-47 (114)
50 1wyw_B Ubiquitin-like protein 94.4 0.058 2E-06 37.2 4.8 40 16-55 20-59 (97)
51 3k9o_B Ubiquitin, UBB+1; E2-25 94.4 0.075 2.6E-06 36.1 5.4 38 18-55 2-39 (96)
52 1wm3_A Ubiquitin-like protein 94.4 0.11 3.7E-06 33.8 5.8 38 18-55 2-39 (72)
53 4fbj_B NEDD8; effector-HOST ta 94.4 0.081 2.8E-06 35.7 5.4 38 18-55 1-38 (88)
54 2bwf_A Ubiquitin-like protein 94.3 0.079 2.7E-06 34.2 5.0 44 17-64 4-47 (77)
55 3a4r_A Nfatc2-interacting prot 93.9 0.22 7.5E-06 33.1 6.8 41 15-55 5-46 (79)
56 1wy8_A NP95-like ring finger p 93.9 0.17 6E-06 33.7 6.3 40 16-55 6-47 (89)
57 3vdz_A Ubiquitin-40S ribosomal 93.7 0.15 5E-06 36.1 5.9 41 15-55 33-73 (111)
58 2io0_B Small ubiquitin-related 93.6 0.13 4.5E-06 35.3 5.2 40 16-55 4-43 (91)
59 2wyq_A HHR23A, UV excision rep 93.5 0.23 7.7E-06 32.7 6.2 37 16-52 4-40 (85)
60 1ttn_A DC-UBP, dendritic cell- 93.5 0.13 4.6E-06 35.9 5.3 42 14-55 20-61 (106)
61 2kzr_A Ubiquitin thioesterase 93.4 0.06 2E-06 36.2 3.2 37 18-55 1-38 (86)
62 2faz_A Ubiquitin-like containi 93.4 0.18 6E-06 32.7 5.5 39 17-55 2-42 (78)
63 1uh6_A Ubiquitin-like 5; beta- 93.3 0.15 5.2E-06 35.8 5.3 40 16-55 27-66 (100)
64 1wz0_A Ubiquitin-like protein 93.2 0.29 9.9E-06 34.5 6.7 41 15-55 22-62 (104)
65 2io1_B Small ubiquitin-related 93.1 0.13 4.6E-06 35.4 4.6 40 16-55 6-45 (94)
66 2k8h_A Small ubiquitin protein 92.9 0.42 1.4E-05 34.0 7.2 41 15-55 24-64 (110)
67 1we6_A Splicing factor, putati 92.9 0.16 5.4E-06 35.7 5.0 40 16-55 26-69 (111)
68 1c1y_B Proto-onkogene serine/t 92.7 0.22 7.5E-06 33.4 5.0 45 19-66 3-47 (77)
69 1we7_A SF3A1 protein; structur 92.6 0.25 8.4E-06 35.0 5.7 40 16-55 24-73 (115)
70 1wf9_A NPL4 family protein; be 92.6 0.18 6.3E-06 35.3 4.9 38 17-55 7-45 (107)
71 1lfd_A Ralgds; RAL, effector i 92.4 1.5 5E-05 29.9 9.0 57 19-77 5-64 (87)
72 1v2y_A 3300001G02RIK protein; 92.3 0.19 6.7E-06 35.5 4.7 40 16-55 6-45 (105)
73 2kd0_A LRR repeats and ubiquit 92.2 0.41 1.4E-05 32.0 6.1 43 13-55 7-49 (85)
74 2d07_B Ubiquitin-like protein 92.2 0.27 9.3E-06 33.7 5.3 41 15-55 15-55 (93)
75 1wxm_A A-RAF proto-oncogene se 92.2 0.25 8.7E-06 33.7 4.9 45 19-66 9-53 (86)
76 4dbg_A Ranbp-type and C3HC4-ty 92.1 0.4 1.4E-05 33.9 6.1 51 5-55 10-64 (105)
77 1v86_A DNA segment, CHR 7, way 91.9 0.56 1.9E-05 32.0 6.7 42 13-55 13-54 (95)
78 1wju_A NEDD8 ultimate buster-1 91.9 0.35 1.2E-05 33.9 5.6 44 12-55 10-57 (100)
79 3b08_A Polyubiquitin-C, ubiqui 91.7 0.29 9.8E-06 35.6 5.3 38 18-55 1-38 (152)
80 2kan_A Uncharacterized protein 91.7 0.64 2.2E-05 31.7 6.7 40 15-55 13-52 (94)
81 1rax_A Protein (RA-domain of R 91.4 1.4 4.9E-05 31.5 8.4 59 17-77 28-89 (115)
82 2l05_A Serine/threonine-protei 91.4 0.47 1.6E-05 33.0 5.6 47 17-66 17-63 (95)
83 2kdb_A Homocysteine-responsive 91.3 0.31 1.1E-05 33.9 4.8 45 10-54 16-63 (99)
84 3m62_B UV excision repair prot 91.2 0.18 6.3E-06 35.2 3.6 38 18-55 2-39 (106)
85 3b08_A Polyubiquitin-C, ubiqui 90.9 0.56 1.9E-05 34.0 6.2 45 17-64 76-120 (152)
86 3rt3_B Ubiquitin-like protein 90.8 0.4 1.4E-05 35.5 5.3 39 17-55 2-40 (159)
87 1yqb_A Ubiquilin 3; structural 90.7 0.51 1.8E-05 32.6 5.5 41 14-55 19-59 (100)
88 3u30_A Ubiquitin, linear DI-ub 90.7 0.51 1.7E-05 35.5 5.9 43 13-55 16-58 (172)
89 1uel_A HHR23B, UV excision rep 90.4 0.55 1.9E-05 31.9 5.3 35 18-52 1-35 (95)
90 3q3f_A Ribonuclease/ubiquitin 90.4 0.49 1.7E-05 36.9 5.6 39 17-55 105-143 (189)
91 1wx8_A Riken cDNA 4931431F19; 90.3 0.61 2.1E-05 31.5 5.5 39 16-55 16-54 (96)
92 2gow_A HCG-1 protein, ubiquiti 90.2 0.47 1.6E-05 34.5 5.1 36 15-50 15-50 (125)
93 3rt3_B Ubiquitin-like protein 90.1 0.55 1.9E-05 34.7 5.6 40 16-55 80-119 (159)
94 1wgh_A Ubiquitin-like 3, HCG-1 90.0 0.53 1.8E-05 33.8 5.2 35 16-50 15-49 (116)
95 1v5o_A 1700011N24RIK protein; 90.0 1 3.5E-05 31.0 6.6 40 16-55 6-49 (102)
96 1wx7_A Ubiquilin 3; ubiquitin- 90.0 0.59 2E-05 32.4 5.3 40 15-55 15-54 (106)
97 1oey_A P67-PHOX, neutrophil cy 89.9 0.9 3.1E-05 30.8 5.9 38 15-54 3-40 (83)
98 2klc_A Ubiquilin-1; ubiquitin- 89.8 0.79 2.7E-05 31.6 5.9 39 16-55 24-62 (101)
99 3b1l_X E3 ubiquitin-protein li 89.2 0.064 2.2E-06 34.7 0.0 37 19-55 2-38 (76)
100 2eke_C Ubiquitin-like protein 89.6 0.54 1.9E-05 33.2 4.9 39 16-55 30-68 (106)
101 3l0w_B Monoubiquitinated proli 89.5 0.57 1.9E-05 35.6 5.3 38 18-55 1-38 (169)
102 2dzk_A UBX domain-containing p 89.4 1.6 5.5E-05 30.7 7.3 50 16-68 12-61 (109)
103 3ny5_A Serine/threonine-protei 89.4 0.54 1.9E-05 32.7 4.6 48 16-66 12-59 (96)
104 1vd2_A Protein kinase C, IOTA 89.0 2.6 8.9E-05 28.8 7.8 50 16-68 5-54 (89)
105 1wgd_A Homocysteine-responsive 88.9 0.7 2.4E-05 31.1 5.0 40 16-55 6-49 (93)
106 3qx1_A FAS-associated factor 1 88.8 1.2 4.1E-05 29.6 6.0 47 18-68 8-54 (84)
107 1rlf_A RLF, RLF-RBD; signal tr 88.6 2.2 7.4E-05 29.3 7.1 51 18-68 6-60 (90)
108 3m63_B Ubiquitin domain-contai 88.3 0.21 7E-06 34.7 1.9 41 14-55 25-65 (101)
109 1j8c_A Ubiquitin-like protein 88.0 1.1 3.7E-05 32.3 5.7 39 16-55 31-69 (125)
110 3kyd_D Small ubiquitin-related 87.8 1 3.5E-05 32.3 5.4 40 16-55 39-78 (115)
111 1rrb_A RAF-1 RBD, RAF proto-on 87.1 0.97 3.3E-05 32.0 4.8 46 19-67 20-65 (107)
112 2l7r_A Ubiquitin-like protein 86.9 1 3.6E-05 30.4 4.8 36 18-55 20-55 (93)
113 1v5t_A 8430435I17RIK protein; 86.6 0.84 2.9E-05 30.7 4.2 39 16-55 6-45 (90)
114 1s3s_G P47 protein; AAA ATPase 86.3 1.8 6.1E-05 31.3 6.0 51 16-68 51-101 (127)
115 1wgg_A Ubiquitin carboxyl-term 86.1 1.6 5.6E-05 29.7 5.5 39 16-55 6-45 (96)
116 2bps_A YUKD protein; ubiquitin 86.1 1.9 6.3E-05 29.0 5.6 53 15-67 2-56 (81)
117 1wia_A Hypothetical ubiquitin- 86.1 0.88 3E-05 30.7 4.1 36 16-51 6-41 (95)
118 2lxa_A Ubiquitin-like protein 85.9 0.81 2.8E-05 30.9 3.8 38 18-55 2-42 (87)
119 3u5e_m 60S ribosomal protein L 85.9 0.15 5.1E-06 36.9 0.0 37 19-55 2-38 (128)
120 1se9_A Ubiquitin family; ubiqu 85.7 1.8 6.3E-05 31.5 5.8 36 16-51 15-51 (126)
121 1wj4_A KIAA0794 protein; UBX d 85.5 1.7 5.9E-05 31.3 5.6 49 16-68 42-90 (124)
122 3u30_A Ubiquitin, linear DI-ub 85.5 2.3 7.9E-05 31.7 6.6 40 16-55 95-134 (172)
123 3kh0_A Ralgds, ralgef, RAL gua 84.3 6.1 0.00021 29.1 8.0 51 18-68 26-79 (140)
124 2daf_A FLJ35834 protein; hypot 83.9 1.6 5.5E-05 31.5 4.7 40 16-55 14-54 (118)
125 2kjr_A CG11242; UBL, ubiquitin 83.4 3.2 0.00011 28.3 6.0 39 17-55 15-55 (95)
126 3epy_A Acyl-COA-binding domain 83.2 2.1 7.1E-05 29.2 4.9 39 146-184 5-43 (89)
127 1ef5_A RGL; RAS-binding domain 82.7 2.3 8E-05 29.8 5.0 59 17-77 18-79 (103)
128 1wxv_A BAG-family molecular ch 82.7 3.1 0.00011 27.7 5.6 38 17-55 7-49 (92)
129 3ai5_A Yeast enhanced green fl 82.1 2.6 8.8E-05 35.2 6.0 40 16-55 232-271 (307)
130 4a20_A Ubiquitin-like protein 81.9 3 0.0001 28.7 5.4 40 15-54 17-59 (98)
131 3u5c_f 40S ribosomal protein S 81.8 0.28 9.6E-06 36.9 0.0 38 18-55 1-38 (152)
132 2cb8_A Acyl-COA-binding protei 81.5 2.7 9.1E-05 28.5 4.9 36 149-184 6-41 (87)
133 1ip9_A BEM1 protein; ubiquitin 81.2 2.9 0.0001 28.4 4.9 46 16-67 11-56 (85)
134 2xzm_9 RPS31E; ribosome, trans 81.0 0.31 1.1E-05 38.1 0.0 38 18-55 1-38 (189)
135 1q1o_A Cell division control p 80.6 2.3 7.8E-05 29.7 4.4 37 18-54 6-49 (98)
136 2dzm_A FAS-associated factor 1 80.5 4.5 0.00016 28.0 6.0 37 18-55 10-46 (100)
137 2l76_A Nfatc2-interacting prot 80.1 5.3 0.00018 27.6 6.1 39 16-55 20-58 (95)
138 2jxx_A Nfatc2-interacting prot 79.3 7.5 0.00026 26.8 6.7 42 14-55 22-64 (97)
139 1hbk_A ACBP, acyl-COA binding 79.0 2.8 9.6E-05 28.4 4.4 37 148-184 5-43 (89)
140 2kmm_A Guanosine-3',5'-BIS(dip 78.6 1.3 4.5E-05 28.1 2.5 30 19-50 2-31 (73)
141 1st7_A ACBP, acyl-COA-binding 78.0 3.7 0.00013 27.7 4.7 36 149-184 5-40 (86)
142 1x1m_A Ubiquitin-like protein 77.4 2.7 9.1E-05 29.1 4.0 40 16-55 11-64 (107)
143 2cr5_A Reproduction 8; UBX dom 77.2 5.5 0.00019 27.8 5.7 50 15-68 21-70 (109)
144 2cop_A Acyl-coenzyme A binding 76.5 3.7 0.00013 29.0 4.6 38 147-184 10-47 (109)
145 1v6e_A Cytoskeleton-associated 74.5 8.2 0.00028 25.8 5.8 40 16-55 6-46 (95)
146 3tix_A Ubiquitin-like protein 74.4 4.9 0.00017 31.6 5.1 40 15-55 55-94 (207)
147 1wjn_A Tubulin-folding protein 73.8 11 0.00038 25.2 6.4 48 16-66 8-58 (97)
148 2npt_A Dual specificity mitoge 73.6 8.5 0.00029 26.6 5.5 50 15-67 12-63 (106)
149 3pge_A SUMO-modified prolifera 73.4 5.1 0.00017 31.4 5.0 40 15-55 27-66 (200)
150 3shq_A UBLCP1; phosphatase, hy 70.5 6.1 0.00021 33.0 5.2 38 17-55 5-42 (320)
151 2fnj_B Transcription elongatio 68.4 9.9 0.00034 27.2 5.2 42 18-64 3-45 (118)
152 3ec8_A Putative uncharacterize 66.4 9.5 0.00033 29.0 5.0 53 16-68 34-90 (166)
153 3fp5_A Acyl-COA binding protei 66.1 8.6 0.00029 27.0 4.4 36 149-184 8-47 (106)
154 2wh5_A Acyl-COA-binding domain 66.1 8.2 0.00028 27.1 4.3 37 148-184 11-51 (106)
155 1t0y_A Tubulin folding cofacto 65.7 13 0.00045 26.2 5.5 39 17-55 6-45 (122)
156 2kj6_A Tubulin folding cofacto 63.7 28 0.00096 23.6 6.7 40 16-55 13-54 (97)
157 1oqy_A HHR23A, UV excision rep 62.5 6.5 0.00022 33.6 3.8 36 17-52 7-42 (368)
158 3flv_A Acyl-COA-binding domain 61.8 11 0.00038 27.0 4.4 40 145-184 24-67 (119)
159 2lbb_A Acyl COA binding protei 61.4 3.5 0.00012 28.5 1.6 36 149-184 14-50 (96)
160 2cqu_A Peroxisomal D3,D2-enoyl 61.2 8.6 0.00029 27.5 3.7 38 147-184 18-55 (116)
161 2dzj_A Synaptic glycoprotein S 60.7 14 0.00047 24.6 4.6 39 17-55 10-52 (88)
162 3hvz_A Uncharacterized protein 58.8 7.7 0.00026 25.6 2.9 35 18-54 6-40 (78)
163 2v1y_A Phosphatidylinositol-4, 58.2 25 0.00086 24.7 5.7 50 16-67 18-74 (108)
164 2kmc_A Fermitin family homolog 55.3 44 0.0015 23.2 6.4 50 17-67 17-71 (102)
165 2l32_A Small archaeal modifier 55.1 11 0.00038 24.4 3.2 33 19-55 2-34 (74)
166 3jyu_A Ubiquitin carboxyl-term 52.9 58 0.002 25.4 7.8 50 16-67 138-189 (231)
167 1nrp_R Receptor based peptide 52.4 4.1 0.00014 20.8 0.5 17 3-19 3-19 (26)
168 3uf8_A Ubiquitin-like protein 50.5 29 0.00099 26.8 5.5 46 15-62 19-64 (209)
169 1wwt_A Threonyl-tRNA synthetas 50.4 10 0.00035 24.9 2.5 33 17-51 9-42 (88)
170 4a3p_A Ubiquitin carboxyl-term 49.2 46 0.0016 25.8 6.5 48 16-65 126-175 (217)
171 1y8x_B Ubiquitin-activating en 49.1 14 0.00047 25.5 3.0 27 29-55 6-34 (98)
172 1s3a_A NADH-ubiquinone oxidore 47.1 60 0.0021 22.0 6.2 38 11-50 60-97 (102)
173 4gdk_A Ubiquitin-like protein 45.4 32 0.0011 23.2 4.4 37 29-67 21-57 (91)
174 4efo_A Serine/threonine-protei 44.0 8.8 0.0003 26.4 1.4 37 19-55 14-51 (94)
175 1vjk_A Molybdopterin convertin 42.4 62 0.0021 21.5 5.6 38 14-51 6-50 (98)
176 3h9d_A ATG8, microtubule-assoc 41.4 38 0.0013 24.0 4.5 35 30-66 50-84 (119)
177 3v7o_A Minor nucleoprotein VP3 39.2 6.3 0.00022 31.4 0.0 39 16-55 20-58 (227)
178 2ylm_A Ubiquitin carboxyl-term 39.1 53 0.0018 29.1 6.0 50 19-68 339-392 (530)
179 3rui_B Autophagy-related prote 39.1 41 0.0014 23.9 4.3 35 29-65 48-82 (118)
180 2r2q_A Gamma-aminobutyric acid 37.9 17 0.00057 25.5 2.1 35 29-65 45-79 (110)
181 1eo6_A GATE-16, golgi-associat 37.9 32 0.0011 24.2 3.6 35 29-65 46-80 (117)
182 4b6w_A Tubulin-specific chaper 36.9 40 0.0014 22.1 3.8 31 25-55 12-42 (86)
183 3m95_A Autophagy related prote 35.9 45 0.0015 23.9 4.2 36 29-66 54-89 (125)
184 1k8r_B Protein kinase BYR2; si 35.7 84 0.0029 21.7 5.2 46 19-68 2-47 (110)
185 1pei_A PEPC22; transferase, nu 35.7 16 0.00053 19.1 1.2 15 98-112 6-20 (26)
186 1e7u_A Phosphatidylinositol 3- 34.2 95 0.0032 29.8 7.2 48 18-66 79-134 (961)
187 4f7z_A RAP guanine nucleotide 32.9 1.1E+02 0.0038 28.8 7.5 55 9-67 649-703 (999)
188 4ajy_B Transcription elongatio 32.5 92 0.0032 22.0 5.3 29 27-55 11-39 (118)
189 2zjd_A Microtubule-associated 32.0 20 0.0007 25.9 1.8 34 30-65 55-89 (130)
190 3goe_A DNA repair protein RAD6 31.9 1.1E+02 0.0039 20.3 5.6 39 17-55 9-47 (82)
191 3dad_A FH1/FH2 domain-containi 31.5 57 0.002 27.4 4.7 52 16-68 14-78 (339)
192 2wlb_A ETP1-FD, electron trans 28.1 1E+02 0.0035 20.4 4.9 29 18-46 4-32 (103)
193 1tke_A Threonyl-tRNA synthetas 27.9 27 0.00092 27.0 2.0 31 20-52 2-32 (224)
194 1pqs_A Cell division control p 26.9 53 0.0018 21.5 3.0 26 29-54 3-28 (77)
195 2bt6_A Adrenodoxin 1; rutheniu 26.7 91 0.0031 20.9 4.4 27 20-46 7-35 (108)
196 1qf6_A THRRS, threonyl-tRNA sy 25.6 34 0.0012 31.0 2.4 29 20-50 2-30 (642)
197 2bkf_A Zinc-finger protein NBR 25.3 1.6E+02 0.0054 19.8 5.9 38 16-54 5-44 (87)
198 1frr_A Ferredoxin I; electron 25.3 1E+02 0.0036 19.8 4.4 26 20-46 4-29 (95)
199 1jq4_A Methane monooxygenase c 25.1 1.1E+02 0.0038 20.0 4.5 29 18-46 5-33 (98)
200 3po0_A Small archaeal modifier 25.1 76 0.0026 20.4 3.6 24 28-51 18-41 (89)
201 3lxf_A Ferredoxin; iron, iron- 24.3 86 0.0029 21.1 3.8 27 20-46 3-29 (104)
202 2i1a_A DNA damage-inducible pr 23.4 29 0.001 24.7 1.3 37 17-54 26-62 (148)
203 3s8i_A Protein DDI1 homolog 1; 23.3 32 0.0011 25.1 1.5 38 17-55 24-61 (148)
204 2k9x_A Tburm1, uncharacterized 23.2 34 0.0012 23.8 1.6 36 16-51 3-48 (110)
205 3rpf_C Molybdopterin convertin 22.6 82 0.0028 19.6 3.3 34 20-54 3-37 (74)
206 1wfy_A Regulator of G-protein 22.5 1.1E+02 0.0037 21.3 4.0 49 6-54 5-54 (104)
207 2yx5_A UPF0062 protein MJ1593; 22.3 1.5E+02 0.005 19.2 4.6 36 27-63 40-77 (83)
208 2lgx_A Fermitin family homolog 21.8 65 0.0022 22.7 2.7 48 18-66 25-73 (112)
209 1ffv_A CUTS, iron-sulfur prote 20.7 1E+02 0.0035 22.9 3.9 28 24-54 9-36 (163)
210 3w1s_C Ubiquitin-like protein 20.6 1.2E+02 0.0043 20.2 4.0 33 29-66 24-56 (91)
211 1a70_A Ferredoxin; iron-sulfur 20.5 1.3E+02 0.0043 19.7 4.0 25 21-46 4-30 (97)
212 1wgk_A Riken cDNA 2900073H19 p 20.4 2E+02 0.007 19.8 5.2 38 17-54 11-60 (114)
213 2v94_A RPS24, 30S ribosomal pr 20.3 77 0.0026 22.1 2.9 50 7-64 16-65 (107)
214 1gtd_A MTH169; synthetase, FGA 20.0 1.5E+02 0.005 19.3 4.2 36 27-63 40-77 (85)
No 1
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=99.97 E-value=1.4e-31 Score=242.65 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=137.0
Q ss_pred ceeeeeccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcch
Q psy5112 2 EVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPEL 81 (184)
Q Consensus 2 e~~~~~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~ 81 (184)
||.++..|+ ++.++|+|+||+.+++.+|++||++|+++.||++|||.+ +.++||||.... +.+++|.+++
T Consensus 207 Ei~a~~~~~------~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e-~~~~FgL~~~~~---~~~~~L~~~~ 276 (555)
T 3au4_A 207 EIEALIHRQ------EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED-SRNMFALFEYNG---HVDKAIESRT 276 (555)
T ss_dssp HHHHHHTTC------CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT-CCSEEEEEEESS---SCEEECCTTS
T ss_pred HHHHHHhCC------CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC-CCCceEEEEEeC---CeeEecCCCC
Confidence 666666666 689999999999999999999999999999999999996 478999999875 6788998888
Q ss_pred hhccccCCCccceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCC
Q psy5112 82 KVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRF 161 (184)
Q Consensus 82 k~~~~~~~~~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~ 161 (184)
+ ++|++++||+..++.+. ...+|+|+||+++|.++....+|+++++|+|.|+++||++|+|
T Consensus 277 ~---------------i~D~~~~we~~~~~~~~----~~~~~~l~fR~~ff~~~~~~~~d~~~~~lly~Q~~~dil~G~~ 337 (555)
T 3au4_A 277 V---------------VADVLAKFEKLAATSEV----GDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHH 337 (555)
T ss_dssp B---------------HHHHHHHHHHHTTSCCT----TCCCCEEEEEEEECSCCTTCCTTSHHHHHHHHHHHHHHHTTCS
T ss_pred c---------------hhHHHHHHHHHhhccCC----CCCceEEEEEEEeecCcccCCcchHHHHhhHHHHHHHHHCCCC
Confidence 5 99999999998654322 2358999999999988777788999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 162 PLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 162 p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
||+.++|++||||++|+++|||+
T Consensus 338 ~~~~e~a~~LAAl~lQ~~~GD~~ 360 (555)
T 3au4_A 338 PAPEENLQVLAALRLQYLQGDYT 360 (555)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999985
No 2
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=99.97 E-value=2.1e-31 Score=245.98 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=134.8
Q ss_pred CceeeeeccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcc-cccCc
Q psy5112 1 MEVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLE-HYLEP 79 (184)
Q Consensus 1 ~e~~~~~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~-~~l~~ 79 (184)
+||.|+..|+ ++.++|+|+||+.+++.||++||++|+++.||++|||. +.+|||||.... +.. .++.+
T Consensus 253 ~Ei~Ai~~~~------~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~--e~~~FgL~~~~~---dk~~sll~~ 321 (655)
T 3pvl_A 253 LELQATKSKK------PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLK--DRFGFSLYIALF---DKVSSLGSG 321 (655)
T ss_dssp HHHHHHHHTC------CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCS--SCTTEEEEEEET---TEEEEEETS
T ss_pred HHHHHHHcCC------ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCc--ccccceeEEecC---CceeecccC
Confidence 3677776665 79999999999999999999999999999999999999 568999998764 333 33445
Q ss_pred chhhccccCCCccceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcC
Q psy5112 80 ELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLG 159 (184)
Q Consensus 80 ~~k~~~~~~~~~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G 159 (184)
.++ ++|++++||+..++.+..+ ...+|+|+|||++|.++.....|+++++|+|.|+++||+.|
T Consensus 322 ~e~---------------vlD~l~~~E~~~k~~~~~~--~~~~~~L~FRvkff~p~~~~~~d~it~~LlYlQ~k~dIl~G 384 (655)
T 3pvl_A 322 SDH---------------VMDAISQCEQYAKEQGAQE--RNAPWRLFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFG 384 (655)
T ss_dssp SCB---------------HHHHHHHHHHHHHTTTCCG--GGCCCEEEEEECCCCTTCCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred ceE---------------eecHHHHHHHHHHhhcccc--CCCCeEEEEEEEEecCCcccccCHHHHHHHHHHHhcccccC
Confidence 554 9999999999887765432 34689999999999988778899999999999999999999
Q ss_pred CCCCCHH-HHHHHHHHHHhHhhcCCC
Q psy5112 160 RFPLTKE-LALELAALLSQVCFKQVG 184 (184)
Q Consensus 160 ~~p~~~e-~a~~LAAl~~Q~e~Gd~~ 184 (184)
+|||+.| +|++|||+++|+++|||+
T Consensus 385 rlpc~~E~~a~~LAAl~~Qae~Gd~~ 410 (655)
T 3pvl_A 385 EYRCEKEDDLAELASQQYFVDYGSEM 410 (655)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCChHHHHHHHHHHHHHHHhCCCc
Confidence 9999965 999999999999999984
No 3
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.97 E-value=2.7e-30 Score=218.25 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=117.5
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccce
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKI 94 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~ 94 (184)
..++.++|+||||+..++.||++||++|+++.||++|||. +.++|||+.... .+..+||++..+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~--e~~~FgL~~~~~--~~~~~wLd~~k~------------ 78 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL--EEDYFGLAIWDN--ATSKTWLDSAKE------------ 78 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS--SGGGEEEEEEEE--TTEEEECCTTSB------------
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC--CcceeEEEEEcC--CCccchhccchh------------
Confidence 3689999999999999999999999999999999999999 678999987654 245688888776
Q ss_pred eeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHH
Q psy5112 95 YVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAAL 174 (184)
Q Consensus 95 ~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl 174 (184)
+.|.+ ...+++|+||+|||.+++....|+++++|+|.|+++||++|++||+.|+|++|||+
T Consensus 79 ---i~~q~----------------~~~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAAl 139 (296)
T 3qij_A 79 ---IKKQV----------------RGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSY 139 (296)
T ss_dssp ---HHHHC-------------------CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHH
T ss_pred ---HHHhc----------------CCCCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 43321 12468999999999988778899999999999999999999999999999999999
Q ss_pred HHhHhhcCCC
Q psy5112 175 LSQVCFKQVG 184 (184)
Q Consensus 175 ~~Q~e~Gd~~ 184 (184)
++|+++|||+
T Consensus 140 ~~Qae~Gd~~ 149 (296)
T 3qij_A 140 TIQSELGDYD 149 (296)
T ss_dssp HHHHHHCSCC
T ss_pred HHHHhcCCCC
Confidence 9999999985
No 4
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=99.96 E-value=4.3e-30 Score=219.00 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCeEEEEEEecCCEEEEEEcC--CCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccc
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDG--STTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vds--stT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
.=..++|+|+||+.+.+.||+ +||++|++ ++|||.+...++||||+.++ +.++.|.+..+
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~~~~---~~e~~L~~~~~----------- 65 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWICSE---NLSLQLKPYHK----------- 65 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEEECS---SCEEECCTTCC-----------
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEEECC---ccccccCcccc-----------
Confidence 346799999999999999999 99999995 56899876788999999987 77888989887
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC--CCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHH
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL--SKKETDRERLLLCYQTNQQVVLGRFPLTKELALEL 171 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~--~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~L 171 (184)
.+|++++|++..++...+... ..+.+|+|||++|+++. ....|+++++|+|.|++++|++|+|||+.|+|++|
T Consensus 66 ----~~d~~~~W~~~l~~~~~~~~~-~~~p~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~L 140 (322)
T 4dxa_B 66 ----PLQHVRDWPEILAELTNLDPQ-RETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITL 140 (322)
T ss_dssp ----HHHHHHTHHHHHHHHCSCCCC-CCCCEEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhcCCCCC-CCceEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCHHHHHHH
Confidence 999999999988876554332 34569999999999743 35789999999999999999999999999999999
Q ss_pred HHHHHhHhhcCCC
Q psy5112 172 AALLSQVCFKQVG 184 (184)
Q Consensus 172 AAl~~Q~e~Gd~~ 184 (184)
||+++|+++|||+
T Consensus 141 AAl~~q~e~Gd~~ 153 (322)
T 4dxa_B 141 ASLLLQIVYGNYE 153 (322)
T ss_dssp HHHHHHHHHCSCC
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999985
No 5
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.96 E-value=9.4e-30 Score=215.68 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=117.9
Q ss_pred CceeeeeccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcc
Q psy5112 1 MEVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPE 80 (184)
Q Consensus 1 ~e~~~~~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~ 80 (184)
||+ |.+.|++ ..++.++|+|+|| +..+.+|++||++|+++.||++|||. +.++|||+... .+..+||++.
T Consensus 10 ~~~-~~~~~~~---~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~--e~~~FgL~~~~---~~~~~wL~~~ 79 (314)
T 1h4r_A 10 MSF-SSLKRKQ---PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLR--ETWFFGLQYTI---KDTVAWLKMD 79 (314)
T ss_dssp ---------------CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC--CGGGEEEEEEE---TTEEEECCTT
T ss_pred ccc-ccccCCC---CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCC--CCccceEEEEe---CCcCeeCCCc
Confidence 343 7777776 6789999999999 67799999999999999999999999 67899998873 3667899888
Q ss_pred hhhccccCCCccceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCC-CCCChhhHHhHHHhhhhhhhcC
Q psy5112 81 LKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLS-KKETDRERLLLCYQTNQQVVLG 159 (184)
Q Consensus 81 ~k~~~~~~~~~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~-~~~d~~e~~l~y~Q~~~~v~~G 159 (184)
.+ ++|.. . ....+++|+||+|||.++.. ...|+++++|+|.|+++||++|
T Consensus 80 ~~---------------i~~q~-----------~---~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g 130 (314)
T 1h4r_A 80 KK---------------VLDHD-----------V---SKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDE 130 (314)
T ss_dssp SB---------------GGGSS-----------C---CCSSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTT
T ss_pred cC---------------HHHcC-----------C---CCCCCEEEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCC
Confidence 76 55531 1 12357999999999998775 6789999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 160 RFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 160 ~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
++||+.++|++||||++|+++|||+
T Consensus 131 ~~~~~~e~a~~Laal~~Qa~~Gd~~ 155 (314)
T 1h4r_A 131 KIYCPPEASVLLASYAVQAKYGDYD 155 (314)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999985
No 6
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.96 E-value=2.7e-29 Score=210.76 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=116.1
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccceee
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYV 96 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~ 96 (184)
||.++|+|+||+ .++.+|++||++|+++.||++|||. +.++|||+.... .+..+||++..+
T Consensus 1 ~i~~~V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~--e~~~FgL~~~~~--~~~~~wLd~~~~-------------- 61 (294)
T 1ef1_A 1 TISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLR--EVWFFGLQYQDT--KGFSTWLKLNKK-------------- 61 (294)
T ss_dssp CEEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCC--CGGGEEEEEEBT--TSCEEECCSSSB--------------
T ss_pred CEEEEEEECCce-EEEEECCCCcHHHHHHHHHHHcCCC--CcceeEEEEECC--CCceeecccccC--------------
Confidence 789999999995 5699999999999999999999999 568999998765 345678988876
Q ss_pred eeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCC-CCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHHH
Q psy5112 97 MLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLS-KKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALL 175 (184)
Q Consensus 97 ~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~-~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~ 175 (184)
+.+.. .....+|+|+||++||.+++. ...|+++++|+|.|+++||++|++||+.++|++|||++
T Consensus 62 -l~~q~--------------~~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~ 126 (294)
T 1ef1_A 62 -VTAQD--------------VRKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYA 126 (294)
T ss_dssp -GGGSC--------------BCCCSSEEEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred -HHhhc--------------cCCCCCEEEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHH
Confidence 43321 012457999999999998775 67889999999999999999999999999999999999
Q ss_pred HhHhhcCCC
Q psy5112 176 SQVCFKQVG 184 (184)
Q Consensus 176 ~Q~e~Gd~~ 184 (184)
+|+++|||+
T Consensus 127 ~q~~~Gd~~ 135 (294)
T 1ef1_A 127 VQSKYGDFN 135 (294)
T ss_dssp HHHHHCSCC
T ss_pred HHHHhCCCC
Confidence 999999985
No 7
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.95 E-value=2.1e-27 Score=205.60 Aligned_cols=137 Identities=18% Similarity=0.319 Sum_probs=112.1
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCC--CCcccccCcchhhccccCCCcc
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPID--KNLEHYLEPELKVSQTKGKYPL 92 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~--~~~~~~l~~~~k~~~~~~~~~~ 92 (184)
..++.++|+|+||+.+++.+|++||++|+++.||++|||+ +.++||||...+.+ .+..+|+++..+
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~--e~~~FgL~~~~~~~~~~~~~~wL~~~k~---------- 150 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT--NHDEYSLVRELMEEKKDDELNWLDHGRT---------- 150 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS--CGGGEEEECCC----------CCCTTSB----------
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC--CccccEEEEEecccccchHHHHHhcCch----------
Confidence 4689999999999999999999999999999999999999 67999999876421 134467765543
Q ss_pred ceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC-CCCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHH
Q psy5112 93 KIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL-SKKETDRERLLLCYQTNQQVVLGRFPLTKELALEL 171 (184)
Q Consensus 93 ~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~-~~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~L 171 (184)
+. ++.. ..+++|+||+|+|+.+. ....||++++|+|.|+++||++|+|||+.|+|++|
T Consensus 151 -----l~-----------~q~~-----~~~~~l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~L 209 (371)
T 3ivf_A 151 -----LR-----------EQGV-----EEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEF 209 (371)
T ss_dssp -----TG-----------GGTC-----CTTCEEEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -----hH-----------hhCC-----CCCceEEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceeecCHHHHHHH
Confidence 21 1211 23578999999998654 45689999999999999999999999999999999
Q ss_pred HHHHHhHhhcCCC
Q psy5112 172 AALLSQVCFKQVG 184 (184)
Q Consensus 172 AAl~~Q~e~Gd~~ 184 (184)
||+++|+++|||+
T Consensus 210 AAl~~qae~Gd~~ 222 (371)
T 3ivf_A 210 AGFQCQIQFGPHN 222 (371)
T ss_dssp HHHHHHHHHCSCC
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999985
No 8
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.94 E-value=5.2e-27 Score=213.94 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=117.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
.||.|+|+|+||+ ..+.||++||++|+++.||.+|||. +.++|||+...+ .+..+||++..+
T Consensus 3 k~i~v~V~llDgt-~e~~vd~~tt~~ell~~V~~~LgL~--e~~~FGL~~~d~--~~~~~WLd~~k~------------- 64 (575)
T 2i1j_A 3 KSMNVRVTTMDAE-LEFAIQQTTTGKQLFDQVVKTIGLR--EVWFFGLQYTDS--KGDLTWIKLYKK------------- 64 (575)
T ss_dssp CEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--CGGGEEEEEEBT--TSCEEECCTTSB-------------
T ss_pred ceEEEEEEeCCCe-EEEEECCCCCHHHHHHHHHHHcCCC--CccceeEEEEec--CcchhHhhcccc-------------
Confidence 5899999999995 5699999999999999999999999 668999988765 355689988876
Q ss_pred eeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCC-CCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHH
Q psy5112 96 VMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLS-KKETDRERLLLCYQTNQQVVLGRFPLTKELALELAAL 174 (184)
Q Consensus 96 ~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~-~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl 174 (184)
+.+. . .....+|+|+||++||++++. ...||++++|+|.|+++||+.|+|||+.++|++||||
T Consensus 65 --i~~q-----------~---~~~~~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c~~e~a~~LAAL 128 (575)
T 2i1j_A 65 --VMQQ-----------D---VKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASY 128 (575)
T ss_dssp --GGGS-----------C---BCCCSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred --HHHh-----------c---ccCCCCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4432 1 012457999999999998775 6789999999999999999999999999999999999
Q ss_pred HHhHhhcCCC
Q psy5112 175 LSQVCFKQVG 184 (184)
Q Consensus 175 ~~Q~e~Gd~~ 184 (184)
++|+++|||+
T Consensus 129 ~lQae~GDy~ 138 (575)
T 2i1j_A 129 AVQARHGDHN 138 (575)
T ss_dssp HHHHHHCSCC
T ss_pred HHHHHhcCCC
Confidence 9999999995
No 9
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.94 E-value=4.8e-27 Score=204.16 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=123.3
Q ss_pred CCeEEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCc
Q psy5112 16 LPHSIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYP 91 (184)
Q Consensus 16 ~pi~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~ 91 (184)
.+.+++|+|+||+ ++++.+|++|||+|+++.||++|||. +.++|||+..... .+..+||.++.+
T Consensus 6 ~~~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~--~~~~FgL~~~~~~-~~~~~wL~~~~~--------- 73 (375)
T 2al6_A 6 VLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK--NVACYGLRLSHLQ-SEEVHWLHLDMG--------- 73 (375)
T ss_dssp EEEEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS--CGGGEEEEEEETT-SSCEEEECTTSB---------
T ss_pred ccceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC--eEeEEEEEEEEcC-CCceEeeCCccc---------
Confidence 4678899999999 99999999999999999999999998 7899999986531 134579999986
Q ss_pred cceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCC--CCCCChhhHHhHHHhhhhhhhcCC-CCCCHHHH
Q psy5112 92 LKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL--SKKETDRERLLLCYQTNQQVVLGR-FPLTKELA 168 (184)
Q Consensus 92 ~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~--~~~~d~~e~~l~y~Q~~~~v~~G~-~p~~~e~a 168 (184)
+.|++.+|++.. ...+|+|.||+|||+++. ....|+++++++|.|+++||++|+ +||+.|+|
T Consensus 74 ------l~~~~~k~~~~~---------~~~~~~l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~a 138 (375)
T 2al6_A 74 ------VSNVREKFELAH---------PPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIA 138 (375)
T ss_dssp ------HHHHHHHHHTTS---------CGGGEEEEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHH
T ss_pred ------hhhhhhhhhccc---------CCCceEEEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHH
Confidence 999999997521 234799999999998753 235788999999999999999999 99999999
Q ss_pred HHHHHHHHhHhhcCCC
Q psy5112 169 LELAALLSQVCFKQVG 184 (184)
Q Consensus 169 ~~LAAl~~Q~e~Gd~~ 184 (184)
++||||++|++||||+
T Consensus 139 l~LAaL~~q~~~gD~~ 154 (375)
T 2al6_A 139 LKLGCLEIRRSYGEMR 154 (375)
T ss_dssp HHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999999999984
No 10
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=183.44 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=120.5
Q ss_pred CeEEEEEE------ecCCEEEEEEcCCCCHHHHHHHHH--HHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccC
Q psy5112 17 PHSIPVHL------LNGAYQVTGFDGSTTIEEFLQTLN--SEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKG 88 (184)
Q Consensus 17 pi~~~V~l------lDg~~~~v~vdsstT~~e~~~~i~--~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~ 88 (184)
.-.++|++ |||++++|.+|++||++|++..|| .++|+...+.++|||+..... .+..+||.++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~-~~~~~wL~~~~~------ 93 (392)
T 4eku_A 21 VRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMK-SDEIHWLHPQMT------ 93 (392)
T ss_dssp EEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESS-SCCEEEECTTSB------
T ss_pred eeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECC-CCceEECCCCCc------
Confidence 34678888 999999999999999999999999 789975447899999875431 245689999987
Q ss_pred CCccceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCC--CCCChhhHHhHHHhhhhhhhcCC-CCCCH
Q psy5112 89 KYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLS--KKETDRERLLLCYQTNQQVVLGR-FPLTK 165 (184)
Q Consensus 89 ~~~~~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~--~~~d~~e~~l~y~Q~~~~v~~G~-~p~~~ 165 (184)
+.+++.+|+.. + .+.+|+++||+|||.++.. ..+|+++..++|.|+++|+++|. ++|+.
T Consensus 94 ---------l~~v~~k~~~~----~-----~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~~~~~ 155 (392)
T 4eku_A 94 ---------VGEVQDKYECL----H-----VEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSE 155 (392)
T ss_dssp ---------HHHHHHHSTTT----S-----CGGGEEEEEEECSCCTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCH
T ss_pred ---------HHHHHhhhhhc----c-----CCCceEEEEEEEEEcCCHHHhhhcChHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 99999888642 1 2357999999998877653 24789999999999999999998 78999
Q ss_pred HHHHHHHHHHHhHhhcCCC
Q psy5112 166 ELALELAALLSQVCFKQVG 184 (184)
Q Consensus 166 e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|+|++||||++|++|||++
T Consensus 156 e~al~LAaL~~q~~~gd~~ 174 (392)
T 4eku_A 156 GMALQLGCLELRRFFKDMP 174 (392)
T ss_dssp HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999974
No 11
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.75 E-value=1.6e-18 Score=159.69 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=116.6
Q ss_pred CeEEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcc
Q psy5112 17 PHSIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPL 92 (184)
Q Consensus 17 pi~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~ 92 (184)
+-+++|+++||. ++.|.+|..||++++++.||+++||. ..+.|||..... ..+..+||.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~--~~~~fgL~~~~~-~~~~~~wl~~~~~---------- 73 (656)
T 2j0j_A 7 LKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK--NVACYGLRLSHL-QSEEVHWLHLDMG---------- 73 (656)
T ss_dssp EEEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS--CGGGEEEEEEES-SSCCEEEECTTSB----------
T ss_pred hhheEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcc--eeeeEEEEEeec-ccCceeeeCCCCc----------
Confidence 457889999998 99999999999999999999999998 667899975443 1245689988886
Q ss_pred ceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeeecCCCC--CCChhhHHhHHHhhhhhhhcCCCC-CCHHHHH
Q psy5112 93 KIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSK--KETDRERLLLCYQTNQQVVLGRFP-LTKELAL 169 (184)
Q Consensus 93 ~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~~~~~~--~~d~~e~~l~y~Q~~~~v~~G~~p-~~~e~a~ 169 (184)
+.++..+.++. ....+|++.||.|||.++... .+|...+.++|.|++.|+++|+.+ |..++|+
T Consensus 74 -----~~~~~~~~~~~---------~~~~~~~~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al 139 (656)
T 2j0j_A 74 -----VSNVREKFELA---------HPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIAL 139 (656)
T ss_dssp -----HHHHHHHHTTT---------SCTTSEEEEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred -----HHHHHhhhccc---------CCCcceEEEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhcccccccHhHHH
Confidence 66665443221 123579999999999987654 377888999999999999999997 8899999
Q ss_pred HHHHHHHhHhhcCCC
Q psy5112 170 ELAALLSQVCFKQVG 184 (184)
Q Consensus 170 ~LAAl~~Q~e~Gd~~ 184 (184)
.||+|.+|..||||+
T Consensus 140 ~La~l~~~~~~~d~~ 154 (656)
T 2j0j_A 140 KLGCLEIRRSYGEMR 154 (656)
T ss_dssp HHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999999999983
No 12
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=99.50 E-value=4e-14 Score=101.39 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=78.6
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcc
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPL 92 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~ 92 (184)
+-..+++|+|++.||+++++.||+..||+|+|+.++.|.++. +..+|+|++..+. -..+|.+.+.+.
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~-L~~ER~~EDHE~---------- 71 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPH-LALERGLEDHES---------- 71 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETT-TTEEEEECSSSC----------
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCC-CCcEEeccCchh----------
Confidence 345689999999999999999999999999999999999999 7799999999981 127899999996
Q ss_pred ceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeeeeee
Q psy5112 93 KIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYF 133 (184)
Q Consensus 93 ~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k~f~ 133 (184)
++|+++.|+. ..+.+|+||++++-
T Consensus 72 -----vvevl~~W~~------------~s~nr~~F~kr~~K 95 (100)
T 1wgr_A 72 -----VVEVQAAWPV------------GGDSRFVFRKNFAS 95 (100)
T ss_dssp -----HHHHHTTSCS------------SSCCEEEECSCCSS
T ss_pred -----HHHHHhhCcc------------CCCcEEEEecchhc
Confidence 9999999943 23468999999654
No 13
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=99.25 E-value=4.3e-12 Score=102.33 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=42.2
Q ss_pred CCCChhhHHhHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 138 KKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 138 ~~~d~~e~~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
...||+++.|+|.|+++||++|++||+.|+|++|||+++|+++|||+
T Consensus 22 ~~~Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~ 68 (222)
T 4f7g_A 22 SSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN 68 (222)
T ss_dssp ----CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999999999999999999999999999985
No 14
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=99.24 E-value=3.3e-12 Score=95.29 Aligned_cols=103 Identities=21% Similarity=0.378 Sum_probs=73.3
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCc---c------cccCcchhhccccCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNL---E------HYLEPELKVSQTKGK 89 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~---~------~~l~~~~k~~~~~~~ 89 (184)
.++|.+|||+.+++.||.|.|+.+++..||.++||. ++++|||....+..... + ..+....+|++.+++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~--n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT--NHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCC--CCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCC--CcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 799999999999999999999999999999999999 77889998665421100 0 012223334445555
Q ss_pred CccceeeeeehhHHHHHH---HHHHhCCCcccCCceeEEEEeeeeeecC
Q psy5112 90 YPLKIYVMLCDVISKWET---ALREKGTGKFENNRCVQFIYKNRLYFRS 135 (184)
Q Consensus 90 ~~~~~~~~i~D~l~~we~---~~~~~~~~~~~~~~~~~l~fr~k~f~~~ 135 (184)
. ..|.-..|.. ..++++.. ..-++++|+||||++
T Consensus 91 L-------~~dd~~~WLD~srtL~EQGI~-----e~~tllLRrKfffsd 127 (128)
T 2kc2_A 91 L-------HTDDELNWLDHGRTLREQGVE-----EHETLLLRRKFFYSD 127 (128)
T ss_dssp C-------CCSSSEEEECSSSCHHHHTCC-----TTSEEEEEESSCCCC
T ss_pred h-------cccCCCCcccCCCcHHHcCCC-----CCCEEEEEEEEeccC
Confidence 4 4555567754 34566542 235799999999976
No 15
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.93 E-value=1.9e-09 Score=90.26 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=73.7
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
..+.|+|++.||+++++.|++.+||+|+++.++.+.++. +..+|+||+..+. .+.||.|.+.+.
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~--~~~~W~L~E~~~~-l~lER~ledhE~------------- 93 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG--YSLDWSLVETVSE-LQMERIFEDHEN------------- 93 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC--CCTTCEEEEEEGG-GTEEEECCTTSB-------------
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC--CCCCeEEEEEcCC-ccceeccccchh-------------
Confidence 468999999999999999999999999999999999998 7789999998872 135899999996
Q ss_pred eeeehhHHHHHHHHHHhCCCcccCCceeEEEEeee
Q psy5112 96 VMLCDVISKWETALREKGTGKFENNRCVQFIYKNR 130 (184)
Q Consensus 96 ~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k 130 (184)
|.|+++.|+.. .+.+|+|+++
T Consensus 94 --V~dvl~~W~~d------------s~n~l~f~~~ 114 (281)
T 4gmv_A 94 --LVENLLNWTRD------------SQNKLIFMER 114 (281)
T ss_dssp --HHHHHTTSCTT------------CCCEEEEECC
T ss_pred --HHHHHHhcccC------------CCceEEEEec
Confidence 99999999541 2357999876
No 16
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=98.62 E-value=7.3e-08 Score=79.62 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=64.9
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
.+..|+|+..||+++++.||+.+||+|+++.++.+-+.. +...|+|++..+. ...||.+.+.++
T Consensus 7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~--~~~~W~l~E~~~~-l~lER~ledhE~------------- 70 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSV--DDNSWTLVEHHPH-LGLERCLEDHEL------------- 70 (256)
T ss_dssp -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---------EEEEEEETT-TTEEEECCTTSB-------------
T ss_pred CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCC--CCCCEEEEEECCC-cccccccccchh-------------
Confidence 578999999999999999999999999999999998887 6688999999872 246899999997
Q ss_pred eeeehhHHHHHHHHHHhCCCcccCCceeEEEEeee
Q psy5112 96 VMLCDVISKWETALREKGTGKFENNRCVQFIYKNR 130 (184)
Q Consensus 96 ~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k 130 (184)
+.|+++.|. ...+|+|+++
T Consensus 71 --V~ev~~~~~--------------s~~~l~f~k~ 89 (256)
T 3hk0_A 71 --VVQVESTMA--------------SESKFLFRKN 89 (256)
T ss_dssp --HHHHHHTCC--------------SSCEEEEEEC
T ss_pred --HHHHHhccC--------------CCceEEEecc
Confidence 999987661 1247999985
No 17
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=98.42 E-value=6e-07 Score=73.84 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=64.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcccee
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIY 95 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 95 (184)
..+.++|++.||+++++.||+.+|+.|+|+.++.+.++. ...+++|++..+. ...++.+.+.++
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~--~~~~~~l~E~~~~-~~ler~l~d~E~------------- 96 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCD--CNVDWCLYEIYPE-LQIERVFEDHEN------------- 96 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCC--CCTTEEEEEEETT-TTEEEECCTTSB-------------
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCC--CCCCeEEEEeccc-cccceecccchh-------------
Confidence 467899999999999999999999999999999999998 5567999998762 135789999987
Q ss_pred eeeehhHHHHH
Q psy5112 96 VMLCDVISKWE 106 (184)
Q Consensus 96 ~~i~D~l~~we 106 (184)
++|++..|.
T Consensus 97 --v~~v~~~w~ 105 (291)
T 3tca_A 97 --VVEVLSDWT 105 (291)
T ss_dssp --HHHHHTTSC
T ss_pred --HHHHHHhhc
Confidence 999999883
No 18
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=98.08 E-value=1.8e-06 Score=60.78 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCCeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCccc
Q psy5112 15 SLPHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93 (184)
Q Consensus 15 ~~pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~ 93 (184)
+..+.++|++ ||. .....|+..||++|++..+|+..|-. ..|.|.+..- +.||.|.+.++
T Consensus 5 ~~~mel~Vwv-~g~er~VsGvT~~TTC~DVV~aL~~~~G~~----~~y~LvE~wR---g~ER~L~~~~r----------- 65 (95)
T 2cs4_A 5 SSGMELKVWV-DGVQRIVCGVTEVTTCQEVVIALAQAIGRT----GRYTLIEKWR---DTERHLAPHEN----------- 65 (95)
T ss_dssp SCCBCCCEEE-TTEEECCSSBCSSSCHHHHHHHHHHHHSCC----SEEEEEEEET---TEEEECCSSSC-----------
T ss_pred CCCCEEEEEE-CCceeEEECCCCCCcHHHHHHHHHhccCCC----ccEEEEEecC---CCeecCCCccc-----------
Confidence 3456788888 555 44458999999999999999998865 4599999996 89999999998
Q ss_pred eeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEeee
Q psy5112 94 IYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNR 130 (184)
Q Consensus 94 ~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~k 130 (184)
+++++.+|-+. ..+.+|++|+.
T Consensus 66 ----~l~~l~~wG~~-----------~~eV~F~Lr~~ 87 (95)
T 2cs4_A 66 ----PIISLNKWGQY-----------ASDVQLILRRT 87 (95)
T ss_dssp ----HHHHHHTTGGG-----------STTCEEEEEEE
T ss_pred ----HHHHHHHhCcC-----------CCceEEEEEEC
Confidence 89999988432 23578888875
No 19
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=98.04 E-value=7.3e-06 Score=56.58 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCCeEEEEEEecCCE--EEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcccccCcchhhccccCCCcc
Q psy5112 15 SLPHSIPVHLLNGAY--QVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPL 92 (184)
Q Consensus 15 ~~pi~~~V~llDg~~--~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l~~~~k~~~~~~~~~~ 92 (184)
-+++.++|++-+..- ..+.+.+.||++|++ .+|+..|- ..|-|.+... +.||.|.+.++
T Consensus 4 ~~~mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~-----~~~~LvE~WR---~~ER~L~~~er---------- 64 (86)
T 2uwq_A 4 MMPMFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE-----SDCHLAEVWC---GSERPVADNER---------- 64 (86)
T ss_dssp CSSEEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS-----SSCEEEEEET---TEEEEECTTCB----------
T ss_pred ccceEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC-----CcEEEEeeeC---CCcccCCCccc----------
Confidence 368999999987774 445999999999999 99988775 3489999997 89999999998
Q ss_pred ceeeeeehhHHHHHHHHHHhCCCcccCCceeEEEEee
Q psy5112 93 KIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKN 129 (184)
Q Consensus 93 ~~~~~i~D~l~~we~~~~~~~~~~~~~~~~~~l~fr~ 129 (184)
+++++.+|-. ...+.+|++|+
T Consensus 65 -----~l~~l~~WG~-----------~~~eV~F~Lr~ 85 (86)
T 2uwq_A 65 -----MFDVLQRFGS-----------QRNEVRFFLRH 85 (86)
T ss_dssp -----HHHHHHHHCS-----------CGGGCEEEEEC
T ss_pred -----HHHHHHHHcc-----------cCCceEEEEec
Confidence 8999999832 23457888886
No 20
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=97.35 E-value=0.00057 Score=49.71 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=53.2
Q ss_pred CCeEEEEE----EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC--------CCCCcccccCcchh
Q psy5112 16 LPHSIPVH----LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP--------IDKNLEHYLEPELK 82 (184)
Q Consensus 16 ~pi~~~V~----llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~--------~~~~~~~~l~~~~k 82 (184)
.+-.++|| .++-.++++.+...||+.+++..+-+|.||...+..-|.|.+... .....++.|.++++
T Consensus 8 ~~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~ 86 (116)
T 1wxa_A 8 SGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDEC 86 (116)
T ss_dssp CCCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCC
T ss_pred CCeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEECccccccccCCCceEEECCCCCC
Confidence 45566665 356679999999999999999999999999966788899999752 11245678888876
No 21
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=96.95 E-value=0.0013 Score=50.39 Aligned_cols=60 Identities=23% Similarity=0.152 Sum_probs=48.2
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE-eCCCCCCc--ccccCcchh
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS-DDPIDKNL--EHYLEPELK 82 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~-~~~~~~~~--~~~l~~~~k 82 (184)
-.|++|-|+.+.+.|.|.+|+.||.+.+.+|-.+.+ ++.-||||+ .-. .+. .+-|.+.+.
T Consensus 79 TSfflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV~d-nP~kFALye~vh~--~gev~~RKL~d~E~ 141 (163)
T 3ddc_B 79 TSFYLPLDAIKQMHISSTTTVSEVIQGLLDKFMVVD-NPQKFALFKRIHK--DGQVLFQKLSIADY 141 (163)
T ss_dssp -CEEEEEEEEEEEEEETTCCHHHHHHHHHHHTTCCS-CGGGEEEEEEEEE--TTEEEEEECCTTCC
T ss_pred eeEECCCCceEEEEEccCCcHHHHHHHHHHHhcccC-ChhheEEEEEEcc--CCcEEEEECCCcCc
Confidence 358999999999999999999999999999999987 788999999 332 122 356655553
No 22
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=96.87 E-value=0.0028 Score=46.06 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=57.1
Q ss_pred eEEEEE--EecCCEEEEEEcCCCCHHHHHHHHHHHhCCC-----CCCCceeEEEEeCC-C--------CCCcccccCcch
Q psy5112 18 HSIPVH--LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR-----DSNVSGFALFSDDP-I--------DKNLEHYLEPEL 81 (184)
Q Consensus 18 i~~~V~--llDg~~~~v~vdsstT~~e~~~~i~~klgL~-----~~~~~gFsL~~~~~-~--------~~~~~~~l~~~~ 81 (184)
+.+.|| -+|..+..+.|+..||++|++..+-.+.|.. +.+.+.|-|.++.. . ..-.+|.|.+++
T Consensus 8 f~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL~~~E 87 (117)
T 2c5l_C 8 FFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVLLDQE 87 (117)
T ss_dssp EEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEECCTTS
T ss_pred EEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEecCCCC
Confidence 455555 4677799999999999999999999999976 66899999988763 1 112347888888
Q ss_pred hhccccCCCccceeeeeehhHHHH
Q psy5112 82 KVSQTKGKYPLKIYVMLCDVISKW 105 (184)
Q Consensus 82 k~~~~~~~~~~~~~~~i~D~l~~w 105 (184)
+ +.++.+.|
T Consensus 88 ~---------------~l~~qs~W 96 (117)
T 2c5l_C 88 C---------------VFQAQSKW 96 (117)
T ss_dssp B---------------HHHHHHTC
T ss_pred C---------------HHHHHHhh
Confidence 7 77778877
No 23
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.73 E-value=0.0034 Score=53.58 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=48.7
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC-CCCCceeEEEEeCCCCCCcccccCcc
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR-DSNVSGFALFSDDPIDKNLEHYLEPE 80 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~-~~~~~gFsL~~~~~~~~~~~~~l~~~ 80 (184)
..++++|++. +.++++.+|+++|+.|+|..|.+++.=. ..+.+-||||...... ....||.+.
T Consensus 2 ~~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~-~~~~Wl~~~ 65 (371)
T 3ivf_A 2 VALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDP-KKGIWLEAG 65 (371)
T ss_dssp CCEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSG-GGCEECCTT
T ss_pred ccEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCC-CcCEeccCC
Confidence 3689999999 9999999999999999999999999732 1277889999855311 123566443
No 24
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=96.10 E-value=0.016 Score=41.26 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=50.4
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCcc-cccCcch
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLE-HYLEPEL 81 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~-~~l~~~~ 81 (184)
-+-.+.++||++|.++.++.+-.++|++|++..+++|++..+ ++.-|.+... +.+ ..+.|++
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~---e~l~Lv~v~s---sGEk~~lqp~d 68 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAE---EDLALVAITF---SGEKHELQPND 68 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCG---GGEEEEEECS---SCCCCBCCTTS
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCc---cceEEEEEcc---CCcEeecCCcc
Confidence 345788999999999999999999999999999999999763 3688888765 334 4455555
No 25
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.06 E-value=0.02 Score=38.27 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=41.9
Q ss_pred cCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 9 KNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 9 ~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.|..-..++.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 4 ~~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 4 RASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CCCSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 44555567899999999999999999999999999999999999874
No 26
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=96.01 E-value=0.013 Score=42.78 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC---CCCceeEEEEeCCCCCCcc-cccCcch
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD---SNVSGFALFSDDPIDKNLE-HYLEPEL 81 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~---~~~~gFsL~~~~~~~~~~~-~~l~~~~ 81 (184)
+-.+.++||++|.++.++.+--++||+|++..+++|++..+ +..+..-|.+... +.+ ..+.|++
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~s---sGEk~vlqp~d 74 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSS---SGEKVLLQPTE 74 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEET---TCCCEECCTTC
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEcc---CCcEeecCCcc
Confidence 34789999999999999999999999999999999999875 1223788987765 333 4556655
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.021 Score=39.47 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 10 NPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 10 ~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+|.....++.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 15 NLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp -------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 5666778899999999999999999999999999999999999874
No 28
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.57 E-value=0.029 Score=36.77 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++.+.|..++|...++.+++++|++++=+.|+.+.|+..
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 4789999999999999999999999999999999999874
No 29
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=95.44 E-value=0.026 Score=40.41 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=59.5
Q ss_pred CCeEEEEE--EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe---CCCCC------CcccccCcchhhc
Q psy5112 16 LPHSIPVH--LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD---DPIDK------NLEHYLEPELKVS 84 (184)
Q Consensus 16 ~pi~~~V~--llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~---~~~~~------~~~~~l~~~~k~~ 84 (184)
..+.+.|| ..|..+-.+.++..|||+|+++++..+.+....+...|-|.++ ...++ ...|.|.++++
T Consensus 8 ~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~EE~v~~~~ek~~~~~~~~qRvL~~~E~-- 85 (110)
T 2bye_A 8 QTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEEKYFISKEKNECRKQPFQRAIGPEEE-- 85 (110)
T ss_dssp CCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEECCCCSSSSCSCTTSCCEEEECSSSC--
T ss_pred cEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEEEEeccccccCCccCCceeeecCCCcc--
Confidence 45566665 4677789999999999999999999999998768899999988 22222 12378888887
Q ss_pred cccCCCccceeeeeehhHHHH
Q psy5112 85 QTKGKYPLKIYVMLCDVISKW 105 (184)
Q Consensus 85 ~~~~~~~~~~~~~i~D~l~~w 105 (184)
++.+.+.|
T Consensus 86 -------------vl~aqs~W 93 (110)
T 2bye_A 86 -------------IMQILSSW 93 (110)
T ss_dssp -------------HHHHHHHC
T ss_pred -------------HHHHHhhh
Confidence 88999999
No 30
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.42 E-value=0.04 Score=38.99 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=44.1
Q ss_pred ceeeeeccCCCCCC----CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 2 EVLSILLKNPYHHS----LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 2 e~~~~~~~~p~~~~----~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.++|...+.++-. ..+.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 16 ~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 2ojr_A 16 DELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp GGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT
T ss_pred CEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc
Confidence 34556655444332 5799999999999999999999999999999999999874
No 31
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=95.38 E-value=0.046 Score=37.02 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 10 NPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 10 ~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+|-.....+.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 10 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 10 SGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp -CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 3455567899999999999999999999999999999999999884
No 32
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.30 E-value=0.021 Score=39.60 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=40.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.+.|..+||...+|.|.++||..|+++..|+|.|+.. +.|.|.-
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~---~~~~Lkh 54 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNP---SEYDLKF 54 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCG---GGCEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCCh---hhCeEEe
Confidence 47899999999999999999999999999999999973 4578764
No 33
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=95.28 E-value=0.0074 Score=40.72 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=41.8
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.++.+||+-.||+.+ +++|+++|++++.+.|++++++.. +.|+++...+
T Consensus 3 ~~m~lRvrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~---~~~~l~~~~~ 51 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKR-ITATKRETAATFLKKVAKEFGFQN---NGFSVYINRN 51 (80)
T ss_dssp CCCCCEEECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCT---TTCCCCCSCC
T ss_pred CcEEEEEECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCC---CcceEEecCC
Confidence 468899999999765 779999999999999999999863 5688887664
No 34
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=95.28 E-value=0.039 Score=36.39 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
++.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 688999999999999999999999999999999999874
No 35
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=95.13 E-value=0.042 Score=35.30 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=38.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
+.+.|..++|...++.+++++|++++-+.|+++.|+.. +..-|+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~---~~q~L~~ 45 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP---DQQRLIF 45 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG---GGEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH---HHeEEEE
Confidence 45788999999999999999999999999999999873 3355553
No 36
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.11 E-value=0.067 Score=34.94 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=36.8
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~ 45 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV 45 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4688899999999999999999999999999999999874
No 37
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=95.08 E-value=0.036 Score=35.61 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=37.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+.+.|..++|...++.+++++|++++-+.|+++.|+.. +..-|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~---~~q~L~ 44 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP---QQQRLI 44 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG---GGEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh---HHEEEE
Confidence 45788889999999999999999999999999999874 335554
No 38
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=95.04 E-value=0.064 Score=49.61 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=50.7
Q ss_pred ccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 8 LKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 8 ~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.+.|++-+-.+.++||..|.++.++.+...||++|++..+++++|+.+ .++|.+...
T Consensus 343 ~~~~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~v~~ 399 (694)
T 3cf6_E 343 KRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGE----GLIIVKMNS 399 (694)
T ss_dssp -CCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCS----CEEEEEECT
T ss_pred cCCCCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcc----cceEEEEee
Confidence 366777778899999999999999999999999999999999999883 499998775
No 39
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.01 E-value=0.076 Score=35.70 Aligned_cols=49 Identities=22% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+|-..+.+.|..++|...++.++++.|++++-+.|+.+.|+.. +..-|+
T Consensus 6 ~~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrLi 54 (84)
T 2kk8_A 6 HHHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPV---SKQTLI 54 (84)
T ss_dssp CCCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCG---GGEEEE
T ss_pred cccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcCh---HHEEEE
Confidence 4556899999999999999999999999999999999999873 334554
No 40
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=94.91 E-value=0.043 Score=35.97 Aligned_cols=39 Identities=5% Similarity=-0.098 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|..++|....+.+++++|++++-+.++++.|+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 377889999999999999999999999999999999974
No 41
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=94.88 E-value=0.061 Score=36.16 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=37.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++|....+.|++++|+.++-+.|+.+.|+..
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 43 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 43 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 3578999999999999999999999999999999999874
No 42
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=94.88 E-value=0.038 Score=36.50 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=39.1
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
++.+.|..++|...++.+++++|++++-+.|+.+.|+.. +..-|+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~---~~qrL~~ 48 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP---DQQRLIF 48 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG---GGEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH---HHEEEEE
Confidence 578899999999999999999999999999999999884 2355543
No 43
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=94.73 E-value=0.07 Score=35.71 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..++.+.|..++|....+.+++++|++++=+.|+.+.|+..
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 35689999999999999999999999999999999999874
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.71 E-value=0.057 Score=36.45 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
||..-+.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 5 ~~~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (88)
T 1sif_A 5 HHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP 47 (88)
T ss_dssp -----CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG
T ss_pred ccccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 5566789999999999999999999999999999999999874
No 45
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.70 E-value=0.078 Score=35.26 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++|...++.+++++|+.++-+.|+++.|+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 45 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK 45 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh
Confidence 4688999999999999999999999999999999999874
No 46
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.50 E-value=0.065 Score=37.31 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=37.9
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.|.|..+.|+..++.++++.|++++=+.|+++.|+..
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 36788999999999999999999999999999999999984
No 47
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=94.49 E-value=0.083 Score=35.56 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=36.4
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
++.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 42 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 578999999999999999999999999999999999874
No 48
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=94.46 E-value=0.071 Score=36.56 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=34.9
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~ 38 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCG
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 46788999999999999999999999999999999874
No 49
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.089 Score=37.47 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
||--.+.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 5 ~~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (114)
T 2kdi_A 5 HHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 47 (114)
T ss_dssp CCCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred ccCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 5566899999999999999999999999999999999999874
No 50
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.43 E-value=0.058 Score=37.19 Aligned_cols=40 Identities=5% Similarity=-0.119 Sum_probs=37.2
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.|.|..++|...++.|++++|++++-+.|+.+.|+..
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~ 59 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 59 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 4589999999999999999999999999999999999974
No 51
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=94.42 E-value=0.075 Score=36.10 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=35.3
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~ 39 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 39 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 56889999999999999999999999999999999974
No 52
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=94.37 E-value=0.11 Score=33.84 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=36.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.++|.-.||....+.+.++|+.+.+.+..|++.|+..
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 78899999999999999999999999999999999984
No 53
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.36 E-value=0.081 Score=35.67 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=35.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 46788999999999999999999999999999999874
No 54
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=94.28 E-value=0.079 Score=34.20 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
++.+.|.. +|...++.+++++|++++-+.|+.+.|+.. +..-|+
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~---~~qrL~ 47 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV---ANQRLI 47 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCG---GGEEEE
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCH---HHEEEE
Confidence 46777777 999999999999999999999999999874 335554
No 55
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=93.93 E-value=0.22 Score=33.06 Aligned_cols=41 Identities=5% Similarity=0.043 Sum_probs=37.7
Q ss_pred CCCeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+..|.++|.-.||. ...+.|.++|+.+.+.+..|++.|+..
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~ 46 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG 46 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 35799999999996 899999999999999999999999984
No 56
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.91 E-value=0.17 Score=33.69 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=36.3
Q ss_pred CCeEEEEEEecC-CEEEE-EEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNG-AYQVT-GFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg-~~~~v-~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++| ...++ .+++++|+.++-+.|+.+.|+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~ 47 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP 47 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh
Confidence 568899999999 78999 59999999999999999999874
No 57
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=93.74 E-value=0.15 Score=36.07 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=37.9
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...+.+.|..++|+...+.+++++|++++-+.|+.+.|+..
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh
Confidence 35789999999999999999999999999999999999874
No 58
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=93.56 E-value=0.13 Score=35.30 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=37.3
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++|.-.||....+.|.++|+.+.+.+..|++.|+..
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 4688999999999999999999999999999999999984
No 59
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=93.47 E-value=0.23 Score=32.70 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klg 52 (184)
..+.+.|..++|...++.+++++|++++-+.|+.+.|
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~ 40 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKG 40 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHC
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhcc
Confidence 5788999999999999999999999999999999843
No 60
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.46 E-value=0.13 Score=35.89 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=38.0
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
....+.+.|..++|....+.+++++|++++-+.|+.+.|+..
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 61 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEP 61 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCS
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCc
Confidence 346799999999999999999999999999999999999874
No 61
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=93.42 E-value=0.06 Score=36.23 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=32.6
Q ss_pred eEEEEEEecCCEEEEE-EcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTG-FDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~-vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.++|..++|+.. +. +++++|+.|+-+.|+++.|+..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~ 38 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAP 38 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCT
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCc
Confidence 4689999999764 77 9999999999999999999863
No 62
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=93.41 E-value=0.18 Score=32.73 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=34.8
Q ss_pred CeEEEEEEecCCEE-EEE-EcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQ-VTG-FDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~-~v~-vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|..++|... ++. +++++|++++-+.|+.+.|+..
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~ 42 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP 42 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh
Confidence 36788999999884 999 9999999999999999999874
No 63
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.29 E-value=0.15 Score=35.80 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=37.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.|.|..+.|...++.++++.|++++=+.|+++.|+..
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~ 66 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRW 66 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 4599999999999999999999999999999999999873
No 64
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.21 E-value=0.29 Score=34.46 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=38.3
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.|+|.-.||....+.|.++|+.+.+.+..|++.|+..
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~ 62 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 62 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence 45899999999999999999999999999999999999984
No 65
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.07 E-value=0.13 Score=35.44 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=37.5
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++|.-.||....+.|.++|+.+.+.+.+|++.|+..
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 5688999999999999999999999999999999999984
No 66
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.90 E-value=0.42 Score=34.01 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=38.4
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.|+|.-.||....+.|.++|+.+.+.+..|++.|+..
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~ 64 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR 64 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 45799999999999999999999999999999999999984
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.90 E-value=0.16 Score=35.75 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCeEEEEEEe---cCCEEEEEEcC-CCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLL---NGAYQVTGFDG-STTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~ll---Dg~~~~v~vds-stT~~e~~~~i~~klgL~~ 55 (184)
.+|.+.|..+ +|...++.+++ ++|+.++-+.|..+.|+..
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~ 69 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPA 69 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCH
Confidence 5799999999 89999999998 9999999999999999874
No 68
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=92.65 E-value=0.22 Score=33.39 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=39.5
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
.++|||||++.-.++|-+..|++|++....++=||.. +..+.|..
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~p---e~C~V~~~ 47 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP---ECCAVFRL 47 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCG---GGEEEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCH---HHeEEEEe
Confidence 5899999999999999999999999999999999985 44666644
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=92.62 E-value=0.25 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCeEEEEEEec----------CCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLN----------GAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llD----------g~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+|.+.|.+++ |...++.+++++|+.++-+.|..+.|+..
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPA 73 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCT
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCCh
Confidence 48999999985 67899999999999999999999999874
No 70
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.59 E-value=0.18 Score=35.34 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=34.7
Q ss_pred CeEEEEEEecCCEEEEEEc-CCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFD-GSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vd-sstT~~e~~~~i~~klgL~~ 55 (184)
.|.|+|.-++|+. .+.++ ++.|+.++-+.|..+.|+..
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 4789999999987 79999 99999999999999999874
No 71
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=92.39 E-value=1.5 Score=29.95 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=46.2
Q ss_pred EEEEEEecCC---EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCccccc
Q psy5112 19 SIPVHLLNGA---YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYL 77 (184)
Q Consensus 19 ~~~V~llDg~---~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l 77 (184)
.+||.+-++. ++.|.+.+.-.+..+....-.|.+|.....+.|.|....+ ++.|..+
T Consensus 5 iiRVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp--~~kEL~i 64 (87)
T 1lfd_A 5 IIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIIS--EDHKLKI 64 (87)
T ss_dssp EEEEEESSCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESS--SSCEEEC
T ss_pred EEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcC--CCCEEec
Confidence 4666665444 7999999999999999999999999976789999999986 3444444
No 72
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.26 E-value=0.19 Score=35.49 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++.+.|..++|+..++.|+++.|++|+=+.|.++.|+.+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~ 45 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQ 45 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 4688999999999999999999999999999999998863
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.24 E-value=0.41 Score=31.99 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=36.9
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+|+......+.-++|+...+.+++++|++++-+.|+.+.|+..
T Consensus 7 ~~~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 49 (85)
T 2kd0_A 7 HHSHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLP 49 (85)
T ss_dssp GCSCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCT
T ss_pred cccCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 5566666667777999999999999999999999999999874
No 74
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=92.19 E-value=0.27 Score=33.71 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=37.7
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.++|.-.||....+.|.++|+.+.+.+..|++.|+..
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 55 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 55 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence 35788999999999999999999999999999999999984
No 75
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=92.15 E-value=0.25 Score=33.74 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=40.0
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
.++|||||++.-.|+|-+..|++|++....++=||.. +..+.|..
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~p---e~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQ---DCCVVYRL 53 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCS---SSEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH---HHeEEEEc
Confidence 7999999999999999999999999999999999985 44666654
No 76
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=92.10 E-value=0.4 Score=33.92 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=36.9
Q ss_pred eeeccCCCCCCCCeEEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 5 SILLKNPYHHSLPHSIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 5 ~~~~~~p~~~~~pi~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
||-++.-.-...+|.++|++-|-. ..++.++++.|++++=+.|.++.|+..
T Consensus 10 ~v~~~~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp 64 (105)
T 4dbg_A 10 SVQLKPEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPP 64 (105)
T ss_dssp ----------CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEecCCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCH
Confidence 444444444456899999999954 678889999999999999999999995
No 77
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.91 E-value=0.56 Score=32.00 Aligned_cols=42 Identities=12% Similarity=-0.058 Sum_probs=36.7
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.....+.++|. .+|....+.+++++|+.++-+.|+.+.|+..
T Consensus 13 ~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 13 VGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred CCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 34567889998 5788889999999999999999999999874
No 78
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.86 E-value=0.35 Score=33.93 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEEEec----CCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 12 YHHSLPHSIPVHLLN----GAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 12 ~~~~~pi~~~V~llD----g~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+..+---.++|++++ |+..++.|+++.|++++=+.|+++.|+..
T Consensus 10 f~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~ 57 (100)
T 1wju_A 10 YRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQE 57 (100)
T ss_dssp SSCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCS
T ss_pred hhhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCH
Confidence 444445578999999 77999999999999999999999999873
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=91.72 E-value=0.29 Score=35.58 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=34.8
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 45788899999999999999999999999999999874
No 80
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.68 E-value=0.64 Score=31.68 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=36.1
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..++.+.|..++| ..++.|++++|++++-+.|+.+.|+..
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~ 52 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPI 52 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCT
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4678899999988 788999999999999999999999874
No 81
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=91.44 E-value=1.4 Score=31.51 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=48.6
Q ss_pred CeEEEEEEecCC---EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCccccc
Q psy5112 17 PHSIPVHLLNGA---YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYL 77 (184)
Q Consensus 17 pi~~~V~llDg~---~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l 77 (184)
.-.|||.+-|+. ++.|.+.+.-.+..+.+..-+|.+|.....+.|.|+...+ ++.|..+
T Consensus 28 ~~IIRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp--~~kEL~i 89 (115)
T 1rax_A 28 CCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILS--DDRKLKI 89 (115)
T ss_dssp EEEEEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECS--SSCEEEE
T ss_pred eEEEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcC--CCCeEec
Confidence 357888887655 7999999999999999999999999976788999999887 3444444
No 82
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=91.37 E-value=0.47 Score=32.96 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=41.0
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
.-.++|+|||++.-.|.|-+..|++|++....++=||.. +..+.|..
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~p---e~C~Vy~~ 63 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP---ECCAVYRI 63 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCG---GGEEEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH---HHcEEEEc
Confidence 448999999999999999999999999999999999985 44666644
No 83
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=91.31 E-value=0.31 Score=33.92 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=33.7
Q ss_pred CCCCCCCCeEEEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHh-CCC
Q psy5112 10 NPYHHSLPHSIPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEI-DCR 54 (184)
Q Consensus 10 ~p~~~~~pi~~~V~llDg~--~~~v~vdsstT~~e~~~~i~~kl-gL~ 54 (184)
|+.....+|.+.|..++|+ ..++.+++++|++++=+.|+.++ |..
T Consensus 16 ~~~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p 63 (99)
T 2kdb_A 16 NLYFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP 63 (99)
T ss_dssp -------CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC
Confidence 3444457899999999998 56889999999999999999976 444
No 84
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.18 Score=35.23 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=34.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.+.|..++|....+.++++.|++++=+.|+.+.|+..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 39 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEE 39 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCG
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 56788899999999999999999999999999999873
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=90.89 E-value=0.56 Score=33.97 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=39.1
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
.+.+.|..++|...++.+++++|++++-+.|+.+.|+.. +..-|+
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~qrL~ 120 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP---DQQRLI 120 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCG---GGEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcCh---hhEEEE
Confidence 578899999999999999999999999999999999874 335554
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=90.81 E-value=0.4 Score=35.46 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|..++|...++.++++.|++++=+.|+.+.|+..
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 40 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA 40 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCG
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 367899999999999999999999999999999999974
No 87
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=90.73 E-value=0.51 Score=32.56 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=36.1
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
....+.+.|..++|+ .++.+++++|++++-+.|+.+.|+..
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~ 59 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP 59 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 345688999999997 48999999999999999999999873
No 88
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=90.72 E-value=0.51 Score=35.48 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 13 HHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 13 ~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.....+.+.|..++|...++.+++++|++++=+.|+.+.|+..
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 3446789999999999999999999999999999999999874
No 89
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.39 E-value=0.55 Score=31.89 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=31.6
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klg 52 (184)
+.+.|..++|...++.+++++|++++-+.|+.+.|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~ 35 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKG 35 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcc
Confidence 45788899999999999999999999999999953
No 90
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=90.36 E-value=0.49 Score=36.87 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=36.6
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|..++|++.++.+++++|+.++=+.|+.+.|+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~ 143 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 143 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCH
Confidence 588999999999999999999999999999999999874
No 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.31 E-value=0.61 Score=31.53 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=34.9
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..+ |...++.+++++|++++-+.|+.+.|+..
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 54 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA 54 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 4577888888 88999999999999999999999999874
No 92
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=90.20 E-value=0.47 Score=34.51 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHH
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~k 50 (184)
...|.++|..++|...++.|++++|++++=+.|...
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~ 50 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 50 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSS
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHH
Confidence 456999999999999999999999999999999983
No 93
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=90.13 E-value=0.55 Score=34.70 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=37.3
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++.+.|..++|...++.++++.|++++=+.|+.+.|+..
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 119 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 119 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH
Confidence 4688999999999999999999999999999999999874
No 94
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.01 E-value=0.53 Score=33.78 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=32.7
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHH
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~k 50 (184)
.+|.|+|..++|...++.|++++|++++=+.|+.+
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~ 49 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 49 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHh
Confidence 46899999999999999999999999999999994
No 95
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.99 E-value=1 Score=30.97 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=34.7
Q ss_pred CCeEEEEEEecC----CEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNG----AYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg----~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++| ...++.+++++|+.++-+.|+.+.|+..
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~ 49 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA 49 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh
Confidence 347888888755 6888999999999999999999999874
No 96
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.97 E-value=0.59 Score=32.37 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=35.3
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...+.+.|...+|+ ..+.++.++|++++-+.|+.+.|+..
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~ 54 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP 54 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCT
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 34588899999997 58999999999999999999999873
No 97
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.89 E-value=0.9 Score=30.79 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=35.1
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
..|+.++|+|-+ +.++.+-+..+.+++.+.|++||++.
T Consensus 3 ~~~~~VKV~~~~--tvairvp~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 3 HMAYTLKVHYKY--TVVMKTQPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp SSCEEEEEESSS--EEEEEECTTCCHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 357999999994 89999999999999999999999997
No 98
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=89.83 E-value=0.79 Score=31.60 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=35.1
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|... |...++.+++++|++++-+.|+.+.|+..
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 62 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT 62 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCG
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 4688888888 88889999999999999999999999874
No 99
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=89.22 E-value=0.064 Score=34.71 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=33.2
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 38 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPA 38 (76)
Confidence 4677889999999999999999999999999998873
No 100
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=89.60 E-value=0.54 Score=33.21 Aligned_cols=39 Identities=5% Similarity=0.020 Sum_probs=36.3
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++|.- +|....+.|..+|+.+.+.+..|++.|+..
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~ 68 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 68 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc
Confidence 568999998 999999999999999999999999999984
No 101
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=89.51 E-value=0.57 Score=35.59 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|..++|...++.+++++|++++=+.|+.+.|+..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 46789999999999999999999999999999999874
No 102
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=89.43 E-value=1.6 Score=30.68 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.-..|.|+|+||+...-.+..+.|++++.+-|....+.. ...|.|....+
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~---~~~f~L~t~fP 61 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT---YGNFSLATMFP 61 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS---SCSCEEECSSS
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC---CCceEEEcCCC
Confidence 457899999999999999999999999999999887654 34588886554
No 103
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=89.37 E-value=0.54 Score=32.72 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=41.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
..=.++|+|||++.-.|.|-+..|++|++....++=||.. +..+.|..
T Consensus 12 ~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p---e~C~Vy~~ 59 (96)
T 3ny5_A 12 QKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP---ECCAVYRI 59 (96)
T ss_dssp SSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCG---GGEEEEEC
T ss_pred hhCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCh---HHeEEEEc
Confidence 3457999999999999999999999999999999999985 44666654
No 104
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.00 E-value=2.6 Score=28.79 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=42.1
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..+.+|+++-| ....+.++++.+..++++.|.+..++. ....|.|.-.+.
T Consensus 5 ~~vkvK~~~~g-di~~~~v~~~i~~~~L~~kv~~~~~~~--~~~~f~lky~DE 54 (89)
T 1vd2_A 5 SQVRVKAYYRG-DIMITHFEPSISFEGLCNEVRDMCSFD--NEQLFTMKWIDE 54 (89)
T ss_dssp SCEEEEEESSS-CEEEEEECTTCCHHHHHHHHHHHTTCC--SSCCEEEEECCS
T ss_pred CeEEEEEEeCC-eEEEEECCCCCCHHHHHHHHHHHhCCC--CCCeEEEEEECC
Confidence 35889999885 478999999999999999999999998 557799965553
No 105
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.94 E-value=0.7 Score=31.10 Aligned_cols=40 Identities=13% Similarity=-0.059 Sum_probs=34.2
Q ss_pred CCeEEEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHh--CCCC
Q psy5112 16 LPHSIPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEI--DCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~--~~~v~vdsstT~~e~~~~i~~kl--gL~~ 55 (184)
.++.+.|..++|. ..++.+++++|++++=+.|+.+. |+..
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~ 49 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRP 49 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCT
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCCh
Confidence 4688999999999 56666779999999999999998 8763
No 106
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=88.83 E-value=1.2 Score=29.61 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=38.5
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..|.|+|+||+...-.+.++.|++++.+-|.. .|. ....|.|....|
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~---~~~~f~L~t~fP 54 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGF---PWDEYKLLSTFP 54 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTC---CTTTEEEECSSS
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCC---CCCCeEEEeCCC
Confidence 46899999999999999999999999999987 453 346689885444
No 107
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=88.58 E-value=2.2 Score=29.28 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=44.5
Q ss_pred eEEEEEEec---CC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLLN---GA-YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~llD---g~-~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
-.|||.+-+ |. ++.|.+.+.-.+..+....-+|.+|...+.+.|.|....+
T Consensus 6 ~iIRVs~e~~~~Gn~YKSIlltsqDktp~vI~~al~Khnl~~~~~~~y~L~Q~Lp 60 (90)
T 1rlf_A 6 RIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLP 60 (90)
T ss_dssp EEEEEEECCSSSCCSCCEEEEETTCCCTTHHHHHHHHTTTTSCCCCCEEEEETTT
T ss_pred EEEEEEEEeCCCCceEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcC
Confidence 357777775 32 7999999999999999999999999987899999999887
No 108
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.30 E-value=0.21 Score=34.75 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=33.6
Q ss_pred CCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 14 HSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 14 ~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
-.+.|.++|.. +|+...+.+++++|++++-+.|+.+.|+..
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 65 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV 65 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCS
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcCh
Confidence 34567777876 899999999999999999999999999874
No 109
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.04 E-value=1.1 Score=32.28 Aligned_cols=39 Identities=5% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.|.|..+ |...++.|++++|+.++-+.|+.+.|+..
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 69 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQT 69 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCS
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCc
Confidence 4688889888 88899999999999999999999999874
No 110
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=87.83 E-value=1 Score=32.31 Aligned_cols=40 Identities=5% Similarity=-0.119 Sum_probs=37.2
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++|.-.||....+.|..+|+.+-+.+..|++.|+..
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~ 78 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 78 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCT
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCCh
Confidence 4688999999999999999999999999999999999974
No 111
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=87.14 E-value=0.97 Score=31.99 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=40.6
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.++|||||++.-.|.|-+..|++|++....++=||.. +..+.|...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p---e~C~Vy~~~ 65 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP---ECCAVFRLL 65 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCT---TTEEEEECC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH---HHceeEEcc
Confidence 6999999999999999999999999999999999985 446777553
No 112
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=86.88 E-value=1 Score=30.39 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=31.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.+.|.. |...++.+++++|++++-+.|+++.|+..
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAP 55 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCG
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcCh
Confidence 5555554 89999999999999999999999999874
No 113
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=86.64 E-value=0.84 Score=30.69 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCeEEEEEEecCCEEEE-EEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVT-GFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v-~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.++|.. .|...++ .++++.|+.++-+.|+++-|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 356777875 7888889 99999999999999999999874
No 114
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=86.26 E-value=1.8 Score=31.34 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=40.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.-..|.|+|+||+...-.+..+.|++++.+-|.....=. ....|.|....+
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~~f~L~t~fP 101 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAM--AATSFVLMTTFP 101 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGG--GTSCEEEEETTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCC--CCCCeEEecCCC
Confidence 346799999999999999999999999999998874211 234588876544
No 115
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.10 E-value=1.6 Score=29.70 Aligned_cols=39 Identities=10% Similarity=-0.043 Sum_probs=33.8
Q ss_pred CCeEEEEEEecCCEE-EEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQ-VTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~-~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++|.. .|... .+.++++.|+.++-+.|+++-|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 357788884 78888 6999999999999999999999874
No 116
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=86.09 E-value=1.9 Score=29.01 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=44.3
Q ss_pred CCCeEEEEEE--ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 15 SLPHSIPVHL--LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 15 ~~pi~~~V~l--lDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.+-|.++|-| -.|....+.+...-|++++.+.+.+.++|..+..+||.+-...
T Consensus 2 ~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~N 56 (81)
T 2bps_A 2 GSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVN 56 (81)
T ss_dssp CCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGG
T ss_pred CcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEec
Confidence 3445666666 5888999999999999999999999999998777889887654
No 117
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.06 E-value=0.88 Score=30.68 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=32.6
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHh
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEI 51 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~kl 51 (184)
..|.+.|..++|....+.|+++.|++++-+.|+.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC
Confidence 458889999999999999999999999999998876
No 118
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=85.94 E-value=0.81 Score=30.94 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=33.4
Q ss_pred eEEEEEEecCCEEEEEEc--CCCCHHHHHHHH-HHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFD--GSTTIEEFLQTL-NSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vd--sstT~~e~~~~i-~~klgL~~ 55 (184)
+.+.|..++|...++.++ ++.|+.++=+.| +.+-|+..
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~ 42 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHI 42 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSS
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCCh
Confidence 678899999998888866 999999999999 88888763
No 119
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=85.87 E-value=0.15 Score=36.91 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.|..++|.+.++.|++++|++++-+.|+.+.|+..
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (128)
T ss_dssp -------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcCh
Confidence 4678889999999999999999999999999999874
No 120
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=85.66 E-value=1.8 Score=31.46 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCeEEEEEEecCCEE-EEEEcCCCCHHHHHHHHHHHh
Q psy5112 16 LPHSIPVHLLNGAYQ-VTGFDGSTTIEEFLQTLNSEI 51 (184)
Q Consensus 16 ~pi~~~V~llDg~~~-~v~vdsstT~~e~~~~i~~kl 51 (184)
..+.++|..++|+.. .+.+++++|+.++=+.|....
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~ 51 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEW 51 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhc
Confidence 578999999999766 799999999999999997643
No 121
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=85.52 E-value=1.7 Score=31.30 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=40.4
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.-..|.|+|+||+...-.+..+.|+++|.+-|... |.. ...|.|+...+
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~---~~~F~L~t~fP 90 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP---NERFELLTNFP 90 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC---TTTEEEECSSS
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC---CCCeEEecCCC
Confidence 45789999999999999999999999999999876 543 34588886554
No 122
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=85.49 E-value=2.3 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=36.7
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++|...++.++++.|+.++=+.|..+.|+..
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 134 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 134 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc
Confidence 4577888999999999999999999999999999999874
No 123
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=84.32 E-value=6.1 Score=29.12 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=44.0
Q ss_pred eEEEEEEe--cCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 18 HSIPVHLL--NGA-YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 18 i~~~V~ll--Dg~-~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
-.|||.+- +|+ ++.|.+.+.-.+..+.+..-+|-+|.....+.|.|....+
T Consensus 26 ~IIRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp 79 (140)
T 3kh0_A 26 CIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILS 79 (140)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcC
Confidence 45777776 444 7999999999999999999999999976679999998876
No 124
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.89 E-value=1.6 Score=31.49 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=35.7
Q ss_pred CCeEEEEE-EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVH-LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~-llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.++|. .++|...++.+++++|++|+=+.++.+.++..
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~ 54 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPH 54 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCT
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCCh
Confidence 35888987 67888999999999999999999999999874
No 125
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=83.37 E-value=3.2 Score=28.32 Aligned_cols=39 Identities=8% Similarity=-0.080 Sum_probs=32.7
Q ss_pred CeEEEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~--~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|...++. ..++.++++.|++++=+.|..+.|+..
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~ 55 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCA 55 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCT
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCH
Confidence 456666665554 789999999999999999999999985
No 126
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=83.20 E-value=2.1 Score=29.19 Aligned_cols=39 Identities=13% Similarity=-0.042 Sum_probs=33.4
Q ss_pred HhHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 146 LLLCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 146 ~l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
.--|.++...|..-.-..+.++.++|=||.=|+..||++
T Consensus 5 ~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~ 43 (89)
T 3epy_A 5 QADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDIN 43 (89)
T ss_dssp HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCC
Confidence 345788888888777778899999999999999999986
No 127
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=82.67 E-value=2.3 Score=29.82 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=46.8
Q ss_pred CeEEEEEEecCC---EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCCCCCCccccc
Q psy5112 17 PHSIPVHLLNGA---YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYL 77 (184)
Q Consensus 17 pi~~~V~llDg~---~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~~~~~~~~~l 77 (184)
.-.|||.+-++. ++.|.+.+.-.+..+....-+|.+|.....+.|.|....+ ++.|..+
T Consensus 18 ~~iIRVs~e~~~g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp--~~kEL~i 79 (103)
T 1ef5_A 18 TCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVIS--EDKELVI 79 (103)
T ss_dssp CCCEEEEESSCSSCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECS--SSCCEES
T ss_pred eEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcC--CCCEEec
Confidence 345777775433 7999999999999999999999999986679999999887 3444333
No 128
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.65 E-value=3.1 Score=27.66 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCEEEEEEcCC-----CCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGS-----TTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdss-----tT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|.. .|...++.+++. +|+.++-+.|..+.|+..
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~ 49 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ 49 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH
Confidence 57788877 577789999995 999999999999999874
No 129
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=82.13 E-value=2.6 Score=35.22 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=36.7
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|..++|...++.+++++|++++-+.|+.+.|+..
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~ 271 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 4678889999999999999999999999999999999874
No 130
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=81.94 E-value=3 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=32.5
Q ss_pred CCCeEEEEEEecCCEEEE--EEcCCCCHHHHHHHH-HHHhCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVT--GFDGSTTIEEFLQTL-NSEIDCR 54 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v--~vdsstT~~e~~~~i-~~klgL~ 54 (184)
...+.+.|..++|...++ .++++.|++++=+.| ..+-|+.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip 59 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH 59 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC
Confidence 467899999999997666 556999999999999 6666765
No 131
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=81.78 E-value=0.28 Score=36.86 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.|.|..++|...++.|++++|++++=+.|+.+.|+..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~ 38 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (152)
T ss_dssp --------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 35678889999999999999999999999999999874
No 132
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=81.52 E-value=2.7 Score=28.49 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 149 CYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 149 y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|.++...|..-.-..+.++.++|=||.-|+..||++
T Consensus 6 F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~ 41 (87)
T 2cb8_A 6 FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDIN 41 (87)
T ss_dssp HHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCC
Confidence 666777776655567899999999999999999986
No 133
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=81.16 E-value=2.9 Score=28.36 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=39.7
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.++-++|++-|+ ..++.+.+..+-+++.+.|+.||.+.+ |-|+...
T Consensus 11 ~~~KVK~yy~DD-IiAIrvP~di~~~~L~dKi~~RLk~~~-----~~l~~yk 56 (85)
T 1ip9_A 11 KTTKIKFYYKDD-IFALMLKGDTTYKELRSKIAPRIDTDN-----FKLQTKL 56 (85)
T ss_dssp CCEEEEECBTTC-CEEEEECSCCCHHHHHHHHHHHHTSSC-----EEEEECC
T ss_pred CceEEEEEecCc-EEEEECCCCCCHHHHHHHHHHHhcccc-----eEEEEec
Confidence 679999999986 889999999999999999999999952 6666544
No 134
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=80.96 E-value=0.31 Score=38.06 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=0.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
|.|.|..++|.+.++.|+++.|+.++=+.|..+.|+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~ 38 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEI 38 (189)
T ss_dssp --------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcCh
Confidence 35678889999999999999999999999999999874
No 135
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=80.60 E-value=2.3 Score=29.66 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=33.2
Q ss_pred eEEEEEEec-------CCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 18 HSIPVHLLN-------GAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 18 i~~~V~llD-------g~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
+.+||++-+ +...++.|.++.+-.|+.++|.+|++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 778888875 4479999999999999999999999997
No 136
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.49 E-value=4.5 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=31.3
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+.++|.+ .|...++.+++++|++++=+.|+++-|+..
T Consensus 10 ~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp 46 (100)
T 2dzm_A 10 LDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPV 46 (100)
T ss_dssp EEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCT
T ss_pred EEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 3444544 777889999999999999999999999985
No 137
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=80.14 E-value=5.3 Score=27.65 Aligned_cols=39 Identities=3% Similarity=0.073 Sum_probs=36.3
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++|. -+|...-+.+-.+|..+-+.+..|++.|+..
T Consensus 20 ~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~ 58 (95)
T 2l76_A 20 RLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSP 58 (95)
T ss_dssp CCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCG
T ss_pred CeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCCh
Confidence 45999999 5899999999999999999999999999994
No 138
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=79.33 E-value=7.5 Score=26.77 Aligned_cols=42 Identities=5% Similarity=0.056 Sum_probs=37.1
Q ss_pred CCCCeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 14 HSLPHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 14 ~~~pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
-...|.++|.-.||. ...+.|..+|+.+-+.+..|++.|+..
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~ 64 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG 64 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 346688888888995 789999999999999999999999984
No 139
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=79.02 E-value=2.8 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=29.9
Q ss_pred HHHhhhhhhhcCC--CCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 148 LCYQTNQQVVLGR--FPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 148 ~y~Q~~~~v~~G~--~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
-|.++...|..-. ...+.++.++|=||.=|+..|||+
T Consensus 5 ~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~ 43 (89)
T 1hbk_A 5 VFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCN 43 (89)
T ss_dssp HHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCC
Confidence 3666777766644 567899999999999999999986
No 140
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=78.63 E-value=1.3 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=23.7
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHH
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~k 50 (184)
.++|+++||.. ..+...+|+.|++..+...
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSLHSD 31 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHHCSH
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHHhhc
Confidence 47888999986 5667889999998877443
No 141
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=78.03 E-value=3.7 Score=27.67 Aligned_cols=36 Identities=19% Similarity=0.036 Sum_probs=28.7
Q ss_pred HHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 149 CYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 149 y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|.++...|..-.-..+.++.++|=||.=|+..||++
T Consensus 5 F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~ 40 (86)
T 1st7_A 5 FEEKAKAVNELPTKPSTDELLELYALYKQATVGDND 40 (86)
T ss_dssp HHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCC
Confidence 566666666544457889999999999999999986
No 142
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.39 E-value=2.7 Score=29.09 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCeEEEEEEecC---CEEEEEEcC---------CCCHHHHHHHHHHHh--CCCC
Q psy5112 16 LPHSIPVHLLNG---AYQVTGFDG---------STTIEEFLQTLNSEI--DCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg---~~~~v~vds---------stT~~e~~~~i~~kl--gL~~ 55 (184)
..+.+.|..++| ...++.++. .+|+.++-+.|+.+. |+..
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~ 64 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPD 64 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCC
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCCh
Confidence 457889999999 788899554 499999999999999 8873
No 143
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=77.24 E-value=5.5 Score=27.76 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=39.6
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
..-..|.|+|+||+...-.+..+.|++++.+-|..+ +. ....|.|....+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~---~~~~f~L~t~fP 70 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GY---HKSLYRLSTSFP 70 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TC---CTTTEEEECSSS
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CC---CCCCeEEEeCCC
Confidence 345789999999999999999999999999998865 32 234588876544
No 144
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.52 E-value=3.7 Score=29.00 Aligned_cols=38 Identities=18% Similarity=-0.034 Sum_probs=31.9
Q ss_pred hHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 147 LLCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 147 l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
--|.++...|....-..+.++.++|=||.=|+..|||+
T Consensus 10 ~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~ 47 (109)
T 2cop_A 10 ELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCN 47 (109)
T ss_dssp HHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCC
Confidence 45777888777766667899999999999999999986
No 145
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.47 E-value=8.2 Score=25.85 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..+.+.|...++. ..++.++++.|++++-+.|..+.|+..
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~ 46 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPA 46 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCT
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCH
Confidence 3477888776553 688999999999999999999999984
No 146
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=74.40 E-value=4.9 Score=31.59 Aligned_cols=40 Identities=5% Similarity=0.021 Sum_probs=36.6
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.++|. .||....+.|..+|+.+-+.+..|++.|+..
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~ 94 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 94 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 456899997 5999999999999999999999999999985
No 147
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.81 E-value=11 Score=25.21 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=38.4
Q ss_pred CCeEEEEEE---ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 16 LPHSIPVHL---LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 16 ~pi~~~V~l---lDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
..+.+.|.. .+|...+..++.++|++++-..|....|+.. .. .-|+..
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~-~~--q~L~~~ 58 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPV-SE--LLLSYE 58 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCT-TT--CEEEEE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCCh-hH--eEEEEE
Confidence 357777776 4788999999999999999999999999985 33 455544
No 148
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=73.56 E-value=8.5 Score=26.61 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=38.9
Q ss_pred CCCeEEEEEEecCCEEEEEEc--CCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFD--GSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vd--sstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
+.+++|||..+||....-.|| +.-+.+|++..|.+-+-=. ....|- |++.
T Consensus 12 a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a--T~TAFe-YEDE 63 (106)
T 2npt_A 12 NQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA--TTTAFE-YEDE 63 (106)
T ss_dssp -CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS--CCSEEE-EECT
T ss_pred cCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccc--eeeeee-eccc
Confidence 469999999999999999999 5677999999999985444 555555 5543
No 149
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=73.43 E-value=5.1 Score=31.37 Aligned_cols=40 Identities=5% Similarity=0.021 Sum_probs=36.5
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
...|.++|. .||....+.|-.+|+.+-+.+..|++.|+..
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~ 66 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 66 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh
Confidence 456899997 5999999999999999999999999999984
No 150
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=70.47 E-value=6.1 Score=32.96 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=33.7
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.|.++|.. +|...++.++++.|++++=+.|+++.|+..
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp 42 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRP 42 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 47788885 888899999999999999999999998764
No 151
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=68.43 E-value=9.9 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=32.2
Q ss_pred eEEEEEEecC-CEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 18 HSIPVHLLNG-AYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 18 i~~~V~llDg-~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
+.++|. -| ++.++.++++.|+.++=+.|..+.|+.. +-.-|+
T Consensus 3 mfl~ir--~~ktti~lev~~sdTV~~lK~kI~~~egIP~---~qQrLi 45 (118)
T 2fnj_B 3 VFLMIR--RHKTTIFTDAKESSTVFELKRIVEGILKRPP---EEQRLY 45 (118)
T ss_dssp EEEEEE--EBTEEEEEEEETTSBHHHHHHHHHHHHCCCG---GGEEEE
T ss_pred EEEEEe--cCCEEEEEEeCCcChHHHHHHHHHHHhCCCH---HHeEEE
Confidence 344444 44 5688999999999999999999999874 335565
No 152
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=66.42 E-value=9.5 Score=28.97 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=42.3
Q ss_pred CCeEEEEE----EecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVH----LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~----llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.|=.++|+ .++..++++......|+++++....+|.||...+...|.|..+..
T Consensus 34 ~PG~LKIfG~~L~~G~~YKSvLas~rstA~elVkEALERYgL~ke~~~~y~Lcdvig 90 (166)
T 3ec8_A 34 APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVG 90 (166)
T ss_dssp CEEEEEEECCC--CCSCCEEEEEETTCCHHHHHHHHHHHTTSCGGGGGGEEEEEEEC
T ss_pred CCcceEecccccCCCCCceeeeccccccHHHHHHHHHHHhccCcCCcceeEEEEeec
Confidence 34445554 456679999999999999999999999999765777899987654
No 153
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=66.13 E-value=8.6 Score=26.99 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHhhhhhhhc----CCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 149 CYQTNQQVVL----GRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 149 y~Q~~~~v~~----G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|.++...|.. |....+.++.++|=||.=|+..||++
T Consensus 8 F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~ 47 (106)
T 3fp5_A 8 FDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVN 47 (106)
T ss_dssp HHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 5556555543 33567899999999999999999986
No 154
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=66.10 E-value=8.2 Score=27.07 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=29.3
Q ss_pred HHHhhhhhhhc----CCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 148 LCYQTNQQVVL----GRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 148 ~y~Q~~~~v~~----G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
-|.++...|.. |.+..+.++.++|=||.=|+..|||+
T Consensus 11 ~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~ 51 (106)
T 2wh5_A 11 QFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCL 51 (106)
T ss_dssp HHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCC
Confidence 35666666543 45678899999999999999999985
No 155
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=65.71 E-value=13 Score=26.19 Aligned_cols=39 Identities=3% Similarity=0.030 Sum_probs=32.8
Q ss_pred CeEEEEEEecCC-EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGA-YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~-~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+.|...++. ..++.++++.|++++-+.|..+-|+..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~ 45 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTV 45 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCT
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 466777765554 688999999999999999999999985
No 156
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=63.72 E-value=28 Score=23.59 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=34.0
Q ss_pred CCeEEEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~--~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.-+.+.|...+.. ..++.|+++.|++++=+.|..+-|+..
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~ 54 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSV 54 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCT
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCH
Confidence 4567777775553 789999999999999999999999985
No 157
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=62.52 E-value=6.5 Score=33.55 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=32.8
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klg 52 (184)
.+.|.|+.++|...++.|+++.|+.++-+.|..+.|
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~ 42 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKG 42 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTC
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhC
Confidence 578899999999999999999999999999999544
No 158
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=61.76 E-value=11 Score=27.04 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=31.2
Q ss_pred HHhHHHhhhhhhhc----CCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 145 RLLLCYQTNQQVVL----GRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 145 ~~l~y~Q~~~~v~~----G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
+.=-|.++...|.. |....+.++.++|=||.=|+..|||+
T Consensus 24 Le~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~ 67 (119)
T 3flv_A 24 HETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCK 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 44456666666654 55567999999999999999999986
No 159
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=61.44 E-value=3.5 Score=28.55 Aligned_cols=36 Identities=8% Similarity=-0.051 Sum_probs=26.4
Q ss_pred HHhhhhhhhcCC-CCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 149 CYQTNQQVVLGR-FPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 149 y~Q~~~~v~~G~-~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
|.++...|..-. ...+.++.++|=||.=|+..|||+
T Consensus 14 F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~ 50 (96)
T 2lbb_A 14 FDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCN 50 (96)
T ss_dssp HHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 455666665544 456778888888998899888875
No 160
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.15 E-value=8.6 Score=27.45 Aligned_cols=38 Identities=24% Similarity=0.066 Sum_probs=29.5
Q ss_pred hHHHhhhhhhhcCCCCCCHHHHHHHHHHHHhHhhcCCC
Q psy5112 147 LLCYQTNQQVVLGRFPLTKELALELAALLSQVCFKQVG 184 (184)
Q Consensus 147 l~y~Q~~~~v~~G~~p~~~e~a~~LAAl~~Q~e~Gd~~ 184 (184)
--|.++...|..-.-..+.++.++|=||.=|+..|||+
T Consensus 18 ~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~ 55 (116)
T 2cqu_A 18 KDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCN 55 (116)
T ss_dssp HHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 34666777766544446789999999999999999986
No 161
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.68 E-value=14 Score=24.57 Aligned_cols=39 Identities=8% Similarity=-0.044 Sum_probs=31.7
Q ss_pred CeEEEEEEecCCE--EEE-EEcCCCCHHHHHHHHHHH-hCCCC
Q psy5112 17 PHSIPVHLLNGAY--QVT-GFDGSTTIEEFLQTLNSE-IDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~--~~v-~vdsstT~~e~~~~i~~k-lgL~~ 55 (184)
.+.+.|.-+.|.. .++ +++++.|+.++-+.|+++ -|+..
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~ 52 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYP 52 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCT
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCCh
Confidence 3778888887765 468 999999999999999994 67753
No 162
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=58.79 E-value=7.7 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.8
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
=.+.|++|||.. +.+...+|+.|++..|...+|-.
T Consensus 6 ~~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~ 40 (78)
T 3hvz_A 6 EEVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNR 40 (78)
T ss_dssp CEEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHT
T ss_pred ceEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcc
Confidence 358899999977 45778899999999998887755
No 163
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=58.19 E-value=25 Score=24.71 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=37.8
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHH---h----CCCCCCCceeEEEEeC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE---I----DCRDSNVSGFALFSDD 67 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~k---l----gL~~~~~~gFsL~~~~ 67 (184)
..+.+.+.+|+|-...+.+...+|..|+-+.|-++ . -|. +.+.|.....+
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~--d~~~Y~F~~in 74 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQ--DESSYIFVSVT 74 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCC--CGGGCEEEEEB
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhC--CccceEEEEec
Confidence 56889999999999999999999999997776655 3 455 44455544433
No 164
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=55.34 E-value=44 Score=23.17 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=40.9
Q ss_pred CeEEEEEEec--C---CEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 17 PHSIPVHLLN--G---AYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 17 pi~~~V~llD--g---~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
-..++|+.-| . ..+++.|.+..-++-+.-.+.+++++.. +.+-++|+=..
T Consensus 17 SWeL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~-dWSDhaLWW~~ 71 (102)
T 2kmc_A 17 SWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQ-DWSDYALWWEQ 71 (102)
T ss_dssp CEEEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSS-CCSSEEEEETT
T ss_pred cEEEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhccccc-chHHhhhhhhh
Confidence 3456666666 4 5689999999999999999999999997 88999998543
No 165
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=55.14 E-value=11 Score=24.39 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=25.7
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++|++-......++++..+|++|++ +++||.+
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~ 34 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSP 34 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCS
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCc
Confidence 46677776667789999999998876 5788985
No 166
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=52.93 E-value=58 Score=25.45 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=37.8
Q ss_pred CCeEEEEEEecCCE--EEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 16 LPHSIPVHLLNGAY--QVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 16 ~pi~~~V~llDg~~--~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
.|+.+++...+... .++.+....|++++.+.+|+.++|.. ..-+=||...
T Consensus 138 yP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~--~~~~RLW~~~ 189 (231)
T 3jyu_A 138 YLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPA--ERETRLWNKY 189 (231)
T ss_dssp SCEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCT--TSCEEEEECS
T ss_pred ecceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCC--CCeEEEEEec
Confidence 57777777766553 55777999999999999999999983 2346676544
No 167
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=52.40 E-value=4.1 Score=20.79 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCCCCeE
Q psy5112 3 VLSILLKNPYHHSLPHS 19 (184)
Q Consensus 3 ~~~~~~~~p~~~~~pi~ 19 (184)
--|+|+|||-+...|+.
T Consensus 3 prsfllrnpndkyepfw 19 (26)
T 1nrp_R 3 PRSFLLRNPNDKYEPFW 19 (26)
T ss_pred chhhhhcCCCcccCccc
Confidence 35889999988887763
No 168
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=50.51 E-value=29 Score=26.80 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=38.2
Q ss_pred CCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeE
Q psy5112 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFA 62 (184)
Q Consensus 15 ~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFs 62 (184)
+..|.++|.- +|+...+.|-.+|+.+-+.+..|++.|+.. +.--|-
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~-~~~~f~ 64 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFL 64 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGCEEE
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCCh-heEEEE
Confidence 3568889986 788889999999999999999999999985 343343
No 169
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=50.43 E-value=10 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCEEEEEEcC-CCCHHHHHHHHHHHh
Q psy5112 17 PHSIPVHLLNGAYQVTGFDG-STTIEEFLQTLNSEI 51 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vds-stT~~e~~~~i~~kl 51 (184)
...++|.++||..+.+. . .+|+.|+...+...+
T Consensus 9 ~~~i~I~lpdG~~~~~~--~~~~T~~dia~~i~~~l 42 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAE--SWKTTPYQIACGISQGL 42 (88)
T ss_dssp CCEEEEECTTSCEEEEE--TTTCCHHHHHHHSSTTT
T ss_pred CCCEEEEECCCCEEEcc--cCCCCHHHHHHHhhhcc
Confidence 35588999999986555 3 599999887775443
No 170
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=49.20 E-value=46 Score=25.76 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=36.4
Q ss_pred CCeEEEEEEecCC--EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 16 LPHSIPVHLLNGA--YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 16 ~pi~~~V~llDg~--~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
.|+.+++...... ..++.+..+.|++++.+.+|+.++|.. ..-+=||.
T Consensus 126 yP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~--~~~~RlW~ 175 (217)
T 4a3p_A 126 YLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPD--EKETRLWN 175 (217)
T ss_dssp SCEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCT--TSCEEEEE
T ss_pred eccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCC--CCceEEEE
Confidence 4777777766544 467888999999999999999999984 22355554
No 171
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=49.13 E-value=14 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHH--HhCCCC
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNS--EIDCRD 55 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~--klgL~~ 55 (184)
.+.+.+|+++|.+|+++.+++ ++.|+.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~ 34 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKS 34 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSS
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccC
Confidence 567899999999999999999 678874
No 172
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=47.12 E-value=60 Score=22.02 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=28.9
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHH
Q psy5112 11 PYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 11 p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~k 50 (184)
|..+..| .+..++.||..+.+.++. .+..|+.+.+..-
T Consensus 60 ~~~~~~P-~i~a~Y~~G~ek~i~l~n-~s~~eI~~~l~~l 97 (102)
T 1s3a_A 60 ECSDVQP-KLWARYAFGQETNVPLNN-FSADQVTRALENV 97 (102)
T ss_dssp CCCSSSC-EEEEEESSCCEEEEECTT-CCHHHHHHHHHHH
T ss_pred ECCCCCC-EEEEEECCCCEEEEECCC-CCHHHHHHHHHHH
Confidence 4445555 788999999999999987 6668888776543
No 173
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=45.36 E-value=32 Score=23.20 Aligned_cols=37 Identities=5% Similarity=0.147 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
-..+.|.++.|+++++.-|.++|+|.+ .+.+=||+.+
T Consensus 21 k~KflVp~~~tv~~~~~~lRkrL~l~~--~~alFlyVnn 57 (91)
T 4gdk_A 21 TKKWAVERTRTIQGLIDFIKKFLKLVA--SEQLFIYVNQ 57 (91)
T ss_dssp CCEEEEETTCBHHHHHHHHHHHTTCCS--SSCCEEEETT
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhCCCC--CCeEEEEECC
Confidence 456889999999999999999999994 4557777643
No 174
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=44.02 E-value=8.8 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.016 Sum_probs=31.7
Q ss_pred EEEEEEec-CCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 19 SIPVHLLN-GAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 19 ~~~V~llD-g~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
+++|+-++ ++...+.+++..|+..+-+.|.++-|+.+
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~ 51 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIIS 51 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCH
Confidence 55666665 55799999999999999999999999995
No 175
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=42.36 E-value=62 Score=21.49 Aligned_cols=38 Identities=5% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCCCeEEEEEEe-------cCCEEEEEEcCCCCHHHHHHHHHHHh
Q psy5112 14 HSLPHSIPVHLL-------NGAYQVTGFDGSTTIEEFLQTLNSEI 51 (184)
Q Consensus 14 ~~~pi~~~V~ll-------Dg~~~~v~vdsstT~~e~~~~i~~kl 51 (184)
|--.+.++|.|. +....++++...+|++|+++.+..+-
T Consensus 6 ~~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 6 HHGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp ---CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred ccCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 344566777764 44578888888899999999998763
No 176
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=41.38 E-value=38 Score=24.04 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=29.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 30 QVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 30 ~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
..+.|.+..|+++++..|-.+|+|. ..+.+-||+.
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~--~~~alFl~Vn 84 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLE--AESALFVYTN 84 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCC--TTSCCEEEET
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCC--ccceEEEEEC
Confidence 4578999999999999999999999 4566777763
No 177
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=39.18 E-value=6.3 Score=31.38 Aligned_cols=39 Identities=5% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
..|.++| -.||....+.|..+|+.+-+.+..|++.|+..
T Consensus 20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~ 58 (227)
T 3v7o_A 20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 58 (227)
T ss_dssp ----------------------------------------
T ss_pred CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 4678999 67999999999999999999999999999985
No 178
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=39.10 E-value=53 Score=29.11 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=38.1
Q ss_pred EEEEEEecCC----EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 19 SIPVHLLNGA----YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 19 ~~~V~llDg~----~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.++|++++.. ...+.+....|++|+++.+.+++++.+......=||+...
T Consensus 339 ~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~ 392 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVS 392 (530)
T ss_dssp CEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEET
T ss_pred eEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEEC
Confidence 5677666554 5678888999999999999999999854555666766543
No 179
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=39.10 E-value=41 Score=23.87 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
...+.|.+..|+++++..|-++|+|. ..+.+-||+
T Consensus 48 k~KflVp~~~tv~qf~~~iRkrl~l~--~~~alFl~V 82 (118)
T 3rui_B 48 KRKYLVPADLTVGQFVYVIRKRIMLP--PEKAIFIFV 82 (118)
T ss_dssp CCEEEEETTSBHHHHHHHHHHHTTCC--TTCCEEEEB
T ss_pred cceEEcCCCCCHHHHHHHHHHHhCcC--CCccEEEEE
Confidence 34577999999999999999999999 445566775
No 180
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=37.90 E-value=17 Score=25.47 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
-..+.|....|+++++..|-.+|+|.+ ...+-||.
T Consensus 45 k~KflVp~~~tv~~~~~~iRk~l~l~~--~~alfl~v 79 (110)
T 2r2q_A 45 KRKYLVPSDLTVGQFYFLIRKRIHLRP--EDALFFFV 79 (110)
T ss_dssp CCEEEEETTCBHHHHHHHHHHHTTCCT--TSCCEEEB
T ss_pred eeEEEeCCCCcHHHHHHHHHHHhcCCC--CCcEEEEE
Confidence 356788899999999999999999994 34455564
No 181
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=37.87 E-value=32 Score=24.23 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEE
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFS 65 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~ 65 (184)
-..+.|.+..|+++++..|-.+|+|.+ .+.+-||.
T Consensus 46 k~KflVp~~~tv~~f~~~iRk~l~l~~--~~alfl~v 80 (117)
T 1eo6_A 46 KRKYLVPSDITVAQFMWIIRKRIQLPS--EKAIFLFV 80 (117)
T ss_dssp CCEEEEETTSBHHHHHHHHHHHHTCCT--TSCCEEEB
T ss_pred ceEEEcCCCCCHHHHHHhhHHhhcCCC--CCcEEEEE
Confidence 356688899999999999999999994 34455564
No 182
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=36.92 E-value=40 Score=22.15 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=27.3
Q ss_pred ecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 25 LNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 25 lDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++...++.++.+.|++++=+.|..+-|+..
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~ 42 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPP 42 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCG
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCH
Confidence 3555678999999999999999999999985
No 183
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=35.90 E-value=45 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
...+.|.+..|+++++..|-++|+|+ ..+.+-||+.
T Consensus 54 K~KflVp~~~tv~qf~~~IRkrl~L~--~~~alFl~Vn 89 (125)
T 3m95_A 54 KKKYLVPSDLTVGQFYFLIRKRIHLR--PEDALFFFVN 89 (125)
T ss_dssp CCEEEEETTSBHHHHHHHHHHHTTCC--TTSCCEEEBT
T ss_pred CCEEEcCCCCEeeeehhhhHhhcCCC--ccccEEEEEC
Confidence 35578999999999999999999999 4455667753
No 184
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=35.71 E-value=84 Score=21.66 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=35.7
Q ss_pred EEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 19 SIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 19 ~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.+++.--+|+++.|.....-+ +++...-+|.||. +++.|..++...
T Consensus 2 ~LrFIacnGQTRaVq~~~~y~--~~L~~ALkKF~le--dpskw~Vcvtqs 47 (110)
T 1k8r_B 2 ILRFIACNGQTRAVQSRGDYQ--KTLAIALKKFSLE--DASKFIVCVSQS 47 (110)
T ss_dssp EEEEECSTTCEEEEECCSCHH--HHHHHHHHHHTCC--CTTSEEEEEECS
T ss_pred eeEEeecCCceEEeeehhhHH--HHHHHHHHHcCCC--ChhHeEEEEecC
Confidence 456666789998887766655 7777778899997 889999998764
No 185
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=35.67 E-value=16 Score=19.14 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=11.8
Q ss_pred eehhHHHHHHHHHHh
Q psy5112 98 LCDVISKWETALREK 112 (184)
Q Consensus 98 i~D~l~~we~~~~~~ 112 (184)
-.|.+++||..+++.
T Consensus 6 ~~eliskWe~kSre~ 20 (26)
T 1pei_A 6 SIDLIQKWEEKSREF 20 (26)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999987753
No 186
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=34.24 E-value=95 Score=29.79 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=35.3
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHh-------CCCC-CCCceeEEEEe
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEI-------DCRD-SNVSGFALFSD 66 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~i~~kl-------gL~~-~~~~gFsL~~~ 66 (184)
+.+.|+ .+++..++.|+..+|+.++++.+..++ |+.+ .+.+.|.|-+.
T Consensus 79 ~~v~i~-~~~~~~t~~v~~~~t~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~vLkv~ 134 (961)
T 1e7u_A 79 VFIVIH-RSTTSQTIKVSADDTPGTILQSFFTKMAKKKSLMDIPESQNERDFVLRVC 134 (961)
T ss_dssp EEEEEE-SSSCEEEEEEETTCCHHHHHHHHHHHSCC-----------CCSCCEEEET
T ss_pred eEEEEe-cCCceEEEEECCCCCHHHHHHHHHHHhhhccccccCCCCCCccceEEEec
Confidence 667787 788899999999999999999988887 5543 13456777653
No 187
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=32.88 E-value=1.1e+02 Score=28.77 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=45.7
Q ss_pred cCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeC
Q psy5112 9 KNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDD 67 (184)
Q Consensus 9 ~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~ 67 (184)
+.|.........+++..|.+...+.+..++|+.+++..++.+++.. ++..+-...
T Consensus 649 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 703 (999)
T 4f7z_A 649 RQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSG----EGLIIVKMN 703 (999)
T ss_dssp CCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCC----SCEEEEEEC
T ss_pred cCCCCCccchhhhccccccccccccCCccccHHHHHHhhhhhccCC----Ccceeeccc
Confidence 4556666678899999999999999999999999999999999987 335665444
No 188
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=32.51 E-value=92 Score=22.04 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 27 GAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 27 g~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.++..+.++++.|+.++=+.|.++.|+..
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~giPp 39 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPP 39 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHCCCH
Confidence 45788899999999999999999999984
No 189
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=32.00 E-value=20 Score=25.94 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=27.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEE-EE
Q psy5112 30 QVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFAL-FS 65 (184)
Q Consensus 30 ~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL-~~ 65 (184)
..+.|.+..|+++++..|-++|+|.+ ...+-| |.
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~--~~alFl~~v 89 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNA--NQAFFLLVN 89 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCT--TCCEEEEET
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCC--CceEEEEEE
Confidence 56789999999999999999999994 343444 53
No 190
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=31.88 E-value=1.1e+02 Score=20.26 Aligned_cols=39 Identities=5% Similarity=0.016 Sum_probs=30.5
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
-|.+-.+-.-..-..+.+.+.||+.++...-|.+-|+..
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~ 47 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISF 47 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCC
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCc
Confidence 344444444445678999999999999999999999994
No 191
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=31.54 E-value=57 Score=27.44 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCeEEEEEEecCC-------------EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEeCC
Q psy5112 16 LPHSIPVHLLNGA-------------YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68 (184)
Q Consensus 16 ~pi~~~V~llDg~-------------~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~~~ 68 (184)
.-+.|||.++|++ --.+.+|..+..++....||..+++.. ..+-|||.....
T Consensus 14 ~~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~-~~e~yaLQ~~~~ 78 (339)
T 3dad_A 14 SVVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPL-KLEDSALQVSPS 78 (339)
T ss_dssp CEEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSS-CSSSEEEEETTT
T ss_pred ceeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCC-cccceeeeecCC
Confidence 3578899999887 245778999999999999999999994 378899987553
No 192
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=28.10 E-value=1e+02 Score=20.35 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=22.6
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHH
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~ 46 (184)
+.+++..+||..+++.+++.+|.-|++..
T Consensus 4 ~~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 4 IKVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred eEEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 34444447898899999999999888765
No 193
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=27.91 E-value=27 Score=27.03 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=24.3
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhC
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEID 52 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~klg 52 (184)
++|.++||+. ..+...+|+.|+...+...++
T Consensus 2 i~I~~p~G~~--~~~~~g~T~~dia~~i~~~l~ 32 (224)
T 1tke_A 2 PVITLPDGSQ--RHYDHAVSPMDVALDIGPGLA 32 (224)
T ss_dssp CEEECTTSCE--EECSSCBCHHHHHHHHCHHHH
T ss_pred eEEEeCCCCE--EEecCCCCHHHHHHHHhhhcc
Confidence 5788999987 566678999999988855443
No 194
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=26.86 E-value=53 Score=21.47 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
..++.|.++.+-.++.++|.+|+++.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57889999999999999999999985
No 195
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=26.73 E-value=91 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=21.4
Q ss_pred EEEEE--ecCCEEEEEEcCCCCHHHHHHH
Q psy5112 20 IPVHL--LNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 20 ~~V~l--lDg~~~~v~vdsstT~~e~~~~ 46 (184)
++|.+ +||..+++.+...+|.-|++..
T Consensus 7 ~~V~~~~~~g~~~~v~~~~g~tLL~aa~~ 35 (108)
T 2bt6_A 7 ITVHFINRDGETLTTKGKIGDSLLDVVVQ 35 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHH
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHH
Confidence 45555 6899999999999998887654
No 196
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=25.64 E-value=34 Score=31.05 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=24.0
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHHHHHH
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSE 50 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~i~~k 50 (184)
++|.|+||+. ..++..||+.|+...|...
T Consensus 2 ~~~~~~d~~~--~~~~~~~t~~~~a~~i~~~ 30 (642)
T 1qf6_A 2 PVITLPDGSQ--RHYDHAVSPMDVALDIGPG 30 (642)
T ss_dssp CEEECTTSCE--EECSSCBCHHHHHHHHCHH
T ss_pred ceEEcCCCCe--EEecCCCCHHHHHHHhchh
Confidence 6799999986 5667889999999888654
No 197
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=25.34 E-value=1.6e+02 Score=19.78 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=32.1
Q ss_pred CCeEEEEEEecCCEEEEEEcC--CCCHHHHHHHHHHHhCCC
Q psy5112 16 LPHSIPVHLLNGAYQVTGFDG--STTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 16 ~pi~~~V~llDg~~~~v~vds--stT~~e~~~~i~~klgL~ 54 (184)
.++.++|.+ .|..+.+.|+. .+|-.|+-.+++..-||.
T Consensus 5 ~~v~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~f~L~ 44 (87)
T 2bkf_A 5 PQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN 44 (87)
T ss_dssp CCEEEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS
T ss_pred ceEEEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC
Confidence 578888887 45667777765 999999999999999998
No 198
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=25.32 E-value=1e+02 Score=19.85 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=20.3
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHH
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~ 46 (184)
++|..+|| .+++.+++.+|.-|++..
T Consensus 4 v~~~~~~g-~~~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 4 TVLKTPSG-EFTLDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEETTE-EEEEEECTTCCHHHHHHH
T ss_pred EEEEeCCC-cEEEEeCCCCcHHHHHHH
Confidence 44555777 788999999999888765
No 199
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=25.13 E-value=1.1e+02 Score=19.98 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=23.2
Q ss_pred eEEEEEEecCCEEEEEEcCCCCHHHHHHH
Q psy5112 18 HSIPVHLLNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 18 i~~~V~llDg~~~~v~vdsstT~~e~~~~ 46 (184)
+.++|...||+.+++.+++.+|.-|++..
T Consensus 5 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 5 HTITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 44555556788999999999999998866
No 200
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=25.09 E-value=76 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHh
Q psy5112 28 AYQVTGFDGSTTIEEFLQTLNSEI 51 (184)
Q Consensus 28 ~~~~v~vdsstT~~e~~~~i~~kl 51 (184)
....+.++..+|++|+++.++.+-
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~ 41 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAH 41 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHC
Confidence 567788888899999999998874
No 201
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.26 E-value=86 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.7
Q ss_pred EEEEEecCCEEEEEEcCCCCHHHHHHH
Q psy5112 20 IPVHLLNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 20 ~~V~llDg~~~~v~vdsstT~~e~~~~ 46 (184)
|++..+||+.+++.+.+..|.-|++..
T Consensus 3 vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 3 ILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 566668999999999999999887754
No 202
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=23.43 E-value=29 Score=24.68 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=30.8
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
.+.+++.. ||....+.+|+..|.-=+...+++++||.
T Consensus 26 ~~~v~v~I-nG~~~~~LvDTGAs~s~is~~~a~~lgl~ 62 (148)
T 2i1a_A 26 MLYINIEI-NNYPVKAFVDTGAQTTIMSTRLAKKTGLS 62 (148)
T ss_dssp CCEEEEEE-TTEEEEEEECTTCSSCEEEHHHHHHHTGG
T ss_pred eEEEEEEE-CCEEEEEEEECCCCccccCHHHHHHcCCC
Confidence 45666664 88999999999998877888899999996
No 203
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=23.31 E-value=32 Score=25.08 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=32.5
Q ss_pred CeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy5112 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRD 55 (184)
Q Consensus 17 pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~ 55 (184)
.+.+++. .||....+.+|+..|..=+....++++||..
T Consensus 24 ~l~v~~~-Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~ 61 (148)
T 3s8i_A 24 MLYINCK-VNGHPLKAFVDSGAQMTIMSQACAERCNIMR 61 (148)
T ss_dssp CCEEEEE-ETTEEEEEEECTTCSSCEEEHHHHHHTTCGG
T ss_pred EEEEEEE-ECCEEEEEEEeCCCCcEeeCHHHHHHcCCcc
Confidence 4556666 5999999999999999889999999999973
No 204
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=23.21 E-value=34 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCeEEEEEEecC------CEEEEEEc----CCCCHHHHHHHHHHHh
Q psy5112 16 LPHSIPVHLLNG------AYQVTGFD----GSTTIEEFLQTLNSEI 51 (184)
Q Consensus 16 ~pi~~~V~llDg------~~~~v~vd----sstT~~e~~~~i~~kl 51 (184)
+++.++|.|..| +...+.++ +..|++++++.+++++
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~ 48 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY 48 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc
Confidence 346677777665 44456666 3369999999999986
No 205
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=22.57 E-value=82 Score=19.64 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=23.0
Q ss_pred EEEEEecCCE-EEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 20 IPVHLLNGAY-QVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 20 ~~V~llDg~~-~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
++|.+.-.-. .++++ ..+|++|+.+.+..+-++.
T Consensus 3 v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~ 37 (74)
T 3rpf_C 3 VEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLK 37 (74)
T ss_dssp EEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTT
T ss_pred EEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHH
Confidence 4454443322 34667 6789999999999876665
No 206
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=22.53 E-value=1.1e+02 Score=21.29 Aligned_cols=49 Identities=8% Similarity=-0.079 Sum_probs=40.3
Q ss_pred eeccCCCCCCCCeEEEEEE-ecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 6 ILLKNPYHHSLPHSIPVHL-LNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 6 ~~~~~p~~~~~pi~~~V~l-lDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
+|.-.=++--..+..+.-+ +++.+..+..-++.+.+|++.-|..|-|+.
T Consensus 5 iL~~qEVrlE~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~ 54 (104)
T 1wfy_A 5 SSGDQEVRLENRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLS 54 (104)
T ss_dssp CCCCCCCCCCSCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCC
T ss_pred cccCceEEEEeeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCC
Confidence 3333444455667888878 999999999999999999999999999997
No 207
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=22.31 E-value=1.5e+02 Score=19.20 Aligned_cols=36 Identities=6% Similarity=0.175 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCC--HHHHHHHHHHHhCCCCCCCceeEE
Q psy5112 27 GAYQVTGFDGSTT--IEEFLQTLNSEIDCRDSNVSGFAL 63 (184)
Q Consensus 27 g~~~~v~vdsstT--~~e~~~~i~~klgL~~~~~~gFsL 63 (184)
|....+.+|..++ +.+.++.+|++| |.++-.+.|++
T Consensus 40 gk~~~l~~~~~~~~~a~~~v~~~~~~L-LaNpVie~y~~ 77 (83)
T 2yx5_A 40 YKMIDIIMEGENEEKVKEEVEEMCKKL-LANPVIHDYEI 77 (83)
T ss_dssp CEEEEEEEC-CCHHHHHHHHHHHHHHT-TCCTTTEEEEE
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHh-ccCCcceEEEE
Confidence 4455565665543 367889999998 77656566554
No 208
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=21.77 E-value=65 Score=22.67 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=38.3
Q ss_pred eEEEEEEec-CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 18 HSIPVHLLN-GAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 18 i~~~V~llD-g~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
..++|+.-| +..+++.|.+..-++-+.-.+.+++++.. +.+-++|+=.
T Consensus 25 WeL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~-dWSDhaLWWp 73 (112)
T 2lgx_A 25 WELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKK-DWSDHALWWE 73 (112)
T ss_dssp CCEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCC-CSSSSBEEET
T ss_pred EEEEEEEecCCccEEEEEeeccccccchhhhhhhhcccc-cchHhhhhhh
Confidence 345555544 26678888888999999999999999997 8899999854
No 209
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=20.66 E-value=1e+02 Score=22.87 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.0
Q ss_pred EecCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q psy5112 24 LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCR 54 (184)
Q Consensus 24 llDg~~~~v~vdsstT~~e~~~~i~~klgL~ 54 (184)
..||...++.+++.+|.-+++... +|+.
T Consensus 9 ~vNG~~~~~~v~~~~tLLd~LR~~---lglt 36 (163)
T 1ffv_A 9 NVNGKAQEKAVEPRTLLIHFLREE---LNLT 36 (163)
T ss_dssp EETTEEEEEEECTTCBHHHHHHHT---SCCT
T ss_pred EECCEEEEEecCCCCcHHHHHHhc---CCCc
Confidence 369999999999999999887763 5665
No 210
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=20.60 E-value=1.2e+02 Score=20.25 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEEEe
Q psy5112 29 YQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSD 66 (184)
Q Consensus 29 ~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~~~ 66 (184)
-..+.|.++.|+++++.-|.++|+|. + .=||+.
T Consensus 24 k~KflV~~~~t~~~~v~~lRkrL~l~--a---lFlyVN 56 (91)
T 3w1s_C 24 PSVCKISMSQSFAMVILFLKRRLKMD--H---VYCYIN 56 (91)
T ss_dssp --EEEEETTSBHHHHHHHHHHHHTCS--C---CEEEET
T ss_pred ccEEEcCCCCCHHHHHHHHHHhhCCc--e---EEEEEC
Confidence 45688999999999999999999993 2 455654
No 211
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=20.53 E-value=1.3e+02 Score=19.73 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=19.2
Q ss_pred EEEE--ecCCEEEEEEcCCCCHHHHHHH
Q psy5112 21 PVHL--LNGAYQVTGFDGSTTIEEFLQT 46 (184)
Q Consensus 21 ~V~l--lDg~~~~v~vdsstT~~e~~~~ 46 (184)
+|.| .|| .+++.+++.+|.-|++..
T Consensus 4 ~v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 4 KVTLVTPTG-NVEFQCPDDVYILDAAEE 30 (97)
T ss_dssp EEEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHH
Confidence 4555 455 788999999999888766
No 212
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=20.38 E-value=2e+02 Score=19.79 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=27.7
Q ss_pred CeEEEEEEecC-------C-EEEEEEc---CCCCHHHHHHHHHHHh-CCC
Q psy5112 17 PHSIPVHLLNG-------A-YQVTGFD---GSTTIEEFLQTLNSEI-DCR 54 (184)
Q Consensus 17 pi~~~V~llDg-------~-~~~v~vd---sstT~~e~~~~i~~kl-gL~ 54 (184)
.+.++|.|+.+ + ..+++++ ..+|++|+++.++++. +++
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~ 60 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKER 60 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchh
Confidence 47888888754 2 4457777 3379999999999886 443
No 213
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.32 E-value=77 Score=22.07 Aligned_cols=50 Identities=6% Similarity=-0.094 Sum_probs=38.8
Q ss_pred eccCCCCCCCCeEEEEEEecCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCCCceeEEE
Q psy5112 7 LLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALF 64 (184)
Q Consensus 7 ~~~~p~~~~~pi~~~V~llDg~~~~v~vdsstT~~e~~~~i~~klgL~~~~~~gFsL~ 64 (184)
...||...+..+++.|..+++.+ -+=.|+-+.||..++..+..-.-|++-
T Consensus 16 ~~~N~LL~Rke~~~~v~Hpg~~t--------psk~eirekLA~~~~~~~d~Vvv~~~~ 65 (107)
T 2v94_A 16 VKENKLIGRKEIYFEIYHPGEPT--------PSRKDVKGKLVAMLDLNPETTVIQYIR 65 (107)
T ss_dssp EEEETTTTEEEEEEEEECTTSCC--------CCHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred eeecCCcCcEEEEEEEEeCCCCC--------CCHHHHHHHHHHHHCCCCCEEEEEeeE
Confidence 35799999999999999988654 456799999999999975444445544
No 214
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=20.01 E-value=1.5e+02 Score=19.32 Aligned_cols=36 Identities=6% Similarity=0.149 Sum_probs=24.6
Q ss_pred CCEEEEEEcCCCC--HHHHHHHHHHHhCCCCCCCceeEE
Q psy5112 27 GAYQVTGFDGSTT--IEEFLQTLNSEIDCRDSNVSGFAL 63 (184)
Q Consensus 27 g~~~~v~vdsstT--~~e~~~~i~~klgL~~~~~~gFsL 63 (184)
|....+.+|..+. +.+.++.+|++| |.++-.+.|.+
T Consensus 40 gK~~~l~~~~~~~~~a~~~v~~~~~~L-LaNpVie~~~~ 77 (85)
T 1gtd_A 40 TDVITFTMDEDSLEAVEREVEDMCQRL-LCNPVIHDYDV 77 (85)
T ss_dssp EEEEEEEECCSCHHHHHHHHHHHHHHT-TCCTTTEEEEE
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHh-cCCCcceEEEE
Confidence 4555666675544 368899999998 77656666654
Done!