RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5112
(184 letters)
>gnl|CDD|214604 smart00295, B41, Band 4.1 homologues. Also known as
ezrin/radixin/moesin (ERM) protein domains. Present in
myosins, ezrin, radixin, moesin, protein tyrosine
phosphatases. Plasma membrane-binding domain. These
proteins play structural and regulatory roles in the
assembly and stabilization of specialized plasmamembrane
domains. Some PDZ domain containing proteins bind one or
more of this family. Now includes JAKs.
Length = 201
Score = 66.2 bits (162), Expect = 7e-14
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 34/160 (21%)
Query: 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEP 79
+ V+LL+G D STT EE L+T+ ++ R+S F L +DP D++L H+L+P
Sbjct: 2 LKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESE--YFGLQFEDP-DEDLRHWLDP 58
Query: 80 ELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKK 139
L D K E ++ + Y ++
Sbjct: 59 AKT---------------LLDQDVKSEPL---------------TLYFRVKFYPPDPNQL 88
Query: 140 ETDRERL-LLCYQTNQQVVLGRFPLTKELALELAALLSQV 178
+ D RL LL Q ++ GR P +E AL LAAL Q
Sbjct: 89 KEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQA 128
>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain. This domain is the central
structural domain of the FERM domain.
Length = 113
Score = 40.3 bits (95), Expect = 6e-05
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 139 KETDRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
+ + R LL Q + ++ GR P ++E AL LAAL Q F
Sbjct: 1 LQDEVTRELLYLQLKRDILEGRLPCSEEEALLLAALALQAEF 42
>gnl|CDD|197279 cd09182, PLDc_FAM83B_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83B. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83B (FAM83B). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83B shows high homology to other
FAM83 family members, indicating that FAM83B might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 266
Score = 31.3 bits (71), Expect = 0.24
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 74 EHYLEPELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKN 129
++Y++P K Y L I ++ + ++ LR + F + + +I +N
Sbjct: 1 DNYIQPHYKEW-----YRLAIDALIEGGLEAYQEFLRAERISDFLSEEEILYILEN 51
>gnl|CDD|220330 pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6).
Clusters of short DNA repeats with nonhomologous
spacers, which are found at regular intervals in the
genomes of phylogenetically distinct prokaryotic
species, comprise a family with recognisable features.
This family is known as CRISPR (short for Clustered,
Regularly Interspaced Short Palindromic Repeats). A
number of protein families appear only in association
with these repeats and are designated Cas
(CRISPR-Associated) proteins.
Length = 382
Score = 29.9 bits (67), Expect = 0.74
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 27/134 (20%)
Query: 23 HLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELK 82
HLL GA + L ++ N F + SDD K LE+YL +L
Sbjct: 158 HLLMGAQ----------HRKKLDLREAKKKSHLVNPDIFPVKSDDAQKKLLEYYLLLDLL 207
Query: 83 VSQ------TKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSL 136
++ +G P +V+ C + ++ ++ N+ ++
Sbjct: 208 QNREQLADFLRGAKPAAEFVLECFIRKHCPRLIKLDYNKRYLND-----------HYWLK 256
Query: 137 SKKETDRERLLLCY 150
K +++ LLCY
Sbjct: 257 RDKLAEKDPSLLCY 270
>gnl|CDD|187877 cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain;
loosely associated with CRISPR/Cas systems.
Length = 382
Score = 29.9 bits (67), Expect = 0.84
Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 27/142 (19%)
Query: 15 SLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLE 74
+HLL GA + L ++ N F + SDD K LE
Sbjct: 150 EFVPEDVIHLLMGAQ----------HRKKLDLREAKKKSHLVNPDIFPVKSDDAAKKLLE 199
Query: 75 HYLEPELKVSQ------TKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYK 128
+YL +L ++ +G P +V+ C + ++ ++ N+
Sbjct: 200 YYLLLDLLQNREQLADFLRGAKPAAEFVLECFIRKHCPRLIKYCVNKRYLND-------- 251
Query: 129 NRLYFRSLSKKETDRERLLLCY 150
++ K +++ LLCY
Sbjct: 252 ---HYWLKRDKLAEKDPSLLCY 270
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 40 IEEFLQTLNSEIDCRDSNVSG-----FALFSDD 67
I E L L ++ + +SG FALF+D+
Sbjct: 233 IGEVLAALRAQPGALLARMSGSGATCFALFADE 265
>gnl|CDD|189685 pfam00718, Polyoma_coat, Polyomavirus coat protein.
Length = 297
Score = 28.9 bits (65), Expect = 1.3
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 31 VTGFDGSTTIEEFLQTLNSEI-DCRDSNVSGFA--------LFSDDPIDKNLEHYLEPEL 81
TG D TTIE + LN + +S GF+ SD P K L Y
Sbjct: 13 KTGPDSITTIEAY---LNPRMGQPDESQYYGFSTSITVAASGTSDSPHKKELPCY----- 64
Query: 82 KVSQTKGKYPLKIYVMLCDVISKWE 106
S + + P+ + CD + WE
Sbjct: 65 --SCARIQLPMLNEDLTCDTLLMWE 87
>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
Length = 228
Score = 28.7 bits (64), Expect = 1.6
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 35 DGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNL 73
DGS T+E +ID VSG ALFS + L
Sbjct: 185 DGSMTLELASYLKQHQIDWV---VSGSALFSQGELKTTL 220
>gnl|CDD|204102 pfam08942, DUF1919, Domain of unknown function (DUF1919). This
domain has no known function. It is found in various
hypothetical and putative bacterial proteins.
Length = 198
Score = 28.0 bits (63), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 60 GFALFSDDPID--KNLEHYLEPELKVSQT-KGKYPL 92
+ D I +NL++YLE EL K +YP+
Sbjct: 51 NLYIEPADYIKFLENLDYYLEQELTFINEEKSQYPV 86
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; Provisional.
Length = 429
Score = 27.7 bits (61), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 49 SEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPL 92
SE D D V+G+ + +D I LE+Y P L+V G P+
Sbjct: 291 SEADAMDY-VAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPI 333
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 27.2 bits (60), Expect = 5.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 47 LNSEIDCRDSNVSGFALFS 65
L S I+C S +SGFA+FS
Sbjct: 290 LTSTINCVTSFISGFAIFS 308
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 27.1 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 22 VHLLNGAYQVTGFDGST--TIEEFLQTLNSE 50
+ LLN QV G+T +E+ L+ L E
Sbjct: 100 IQLLNNGKQVLALPGTTLYQLEKALKPLGRE 130
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 27.0 bits (60), Expect = 6.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 24 LLNGAYQVTGFDGSTTIEE 42
LLN A+ +TG+DG+ + E
Sbjct: 223 LLNPAWSMTGYDGTAHMAE 241
>gnl|CDD|226464 COG3955, COG3955, Exopolysaccharide biosynthesis protein [Cell
envelope biogenesis, outer membrane].
Length = 211
Score = 26.7 bits (59), Expect = 7.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 60 GFALFSDDPID--KNLEHYLEPELKVSQTKGKYPLKIY 95
L DD + +N+++YLE EL Q Y K Y
Sbjct: 58 NLYLSPDDYLKFLENMDYYLEQELTFEQEGPVYSCKSY 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,225,326
Number of extensions: 836136
Number of successful extensions: 708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 16
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)