RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5112
(184 letters)
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 85.4 bits (211), Expect = 2e-20
Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 25/167 (14%)
Query: 17 PHSIPVHLLNGAYQVTGFD--GSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLE 74
+ ++ ++G+Y+ +TT+++ ++ + + + F ++ +NL
Sbjct: 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQ----YFTIWI---CSENLS 57
Query: 75 HYLEPELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFEN-NRCVQFIYKNRLYF 133
L+P K + W L E + + RL
Sbjct: 58 LQLKPYHK---------------PLQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPL 102
Query: 134 RSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
+ E L+L + ++ G + + LA+LL Q+ +
Sbjct: 103 EVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVY 149
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 86.5 bits (213), Expect = 2e-20
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 23/172 (13%)
Query: 9 KNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDP 68
H + V+ G + TT E ++ L + DS + FALF +
Sbjct: 208 IEALIHRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSR-NMFALFEYN- 265
Query: 69 IDKNLEHYLEPELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYK 128
+++ +E V DV++K+E G +K
Sbjct: 266 --GHVDKAIESRTVV---------------ADVLAKFEKLAATSEVGDLPWKFY----FK 304
Query: 129 NRLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
+ + + + E + Q ++ V+ G P +E LAAL Q
Sbjct: 305 LYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQ 356
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 80.0 bits (196), Expect = 5e-18
Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 22/172 (12%)
Query: 10 NPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPI 69
P +PV ++G + D +TT E L +I +D GF+L+
Sbjct: 256 QATKSKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDR--FGFSLYIALFD 313
Query: 70 DKNLEHYLEPELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKN 129
+ V D IS+ E +E+G E N + ++
Sbjct: 314 K--VSSLGSGSDHV---------------MDAISQCEQYAKEQG--AQERNAPWRLFFRK 354
Query: 130 RLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTKELAL-ELAALLSQVCF 180
++ + E + L+ Q + V G + KE L ELA+ V +
Sbjct: 355 EVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDY 406
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 43.4 bits (102), Expect = 1e-05
Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 34/163 (20%)
Query: 20 IPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEP 79
+ + +L+G + D S T+ + L T+ + I + + + + ++L+
Sbjct: 88 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDH 147
Query: 80 ELKVS-QTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSK 138
+ Q ++ + + + ++ +
Sbjct: 148 GRTLREQGVEEHE--------------------------------TLLLRRKFFYSDQNV 175
Query: 139 KETD-RERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
D + LL Q ++ G P++ + A E A Q+ F
Sbjct: 176 DSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQF 218
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 2e-04
Identities = 42/211 (19%), Positives = 63/211 (29%), Gaps = 72/211 (34%)
Query: 13 HHSLPHSIPV-HLLNGAYQV-------------TGFDG----STTIE---EFLQTLNSEI 51
H SL H + V GF +T E +FL ++S +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 52 DCRDSNVSGF------AL--FSDDPIDKN----LEHYLEPELKVSQTKGKYPLKIYVMLC 99
+ S V F L F + ++ N L L E + K K +K Y+
Sbjct: 73 E--PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 100 DVISK-----WETAL-REKGTGKFENNRCVQFIY-------KNRLYFRSLSKKETDRERL 146
+ + +AL R G G + + YF L R+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQ-------LVAIFGGQGNTDDYFEEL------RDL- 176
Query: 147 LLCYQTNQQVVLGRFPLTKELALELAALLSQ 177
YQT L +L A LS+
Sbjct: 177 ---YQTYH-------VLVGDLIKFSAETLSE 197
Score = 32.7 bits (74), Expect = 0.072
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 34/106 (32%)
Query: 16 LPHSIPVH--LLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPID-KN 72
LP + P H LL A + I + L N + +D + + D D +
Sbjct: 421 LPVASPFHSHLLVPASDL--------INKDLVKNNVSFNAKDIQIPVY-----DTFDGSD 467
Query: 73 LEHYLEPELKVSQTKGKYPLKIYVMLCDVISK----WETALREKGT 114
L L S ++ + D I + WET + K T
Sbjct: 468 LR-----VLSGSISE---------RIVDCIIRLPVKWETTTQFKAT 499
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 61/186 (32%)
Query: 2 EVLSILLK--NPYHHSLPHSI----PVHL-LNGA-----------YQVTGFDG-STTIEE 42
EV S+LLK + LP + P L + ++ D +T IE
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 43 FLQTLNSEIDCRDSNVSGFALFSDD-PIDKNLEHYLEPELKVSQTKGKYPLKIYVMLCDV 101
L L + R ++F I P + ++
Sbjct: 362 SLNVLEPA-EYRKMFDR-LSVFPPSAHI---------------------PTILLSLI--- 395
Query: 102 ISKW---ETALREKGTGKFENNRCVQFIYKNR------LYFRSLSKKETDRE---RLLLC 149
W + K V+ K +Y K E + ++
Sbjct: 396 ---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 150 YQTNQQ 155
Y +
Sbjct: 453 YNIPKT 458
Score = 35.6 bits (81), Expect = 0.007
Identities = 28/200 (14%), Positives = 67/200 (33%), Gaps = 40/200 (20%)
Query: 1 MEVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEI-------DC 53
+ S++ K P +I + + Y + +E L+ I
Sbjct: 411 LHKYSLVEKQPK----ESTISIPSI---Y----LELKVKLEN-EYALHRSIVDHYNIPKT 458
Query: 54 RDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPL--KIYVMLCDVISKW-ETALR 110
DS+ +D+ ++ LK + + L +++ ++ E +R
Sbjct: 459 FDSDD-----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----RFLEQKIR 508
Query: 111 EKGTGKFENNRCVQFIYKNRLYFRSLSKKETDRERLLLCY-----QTNQQVVLGRFPLTK 165
T + + + + + Y + + ERL+ + + ++ ++
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 166 ELAL--ELAALLSQVCFKQV 183
+AL E A+ + KQV
Sbjct: 569 RIALMAEDEAIFEEA-HKQV 587
Score = 32.5 bits (73), Expect = 0.084
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 47/150 (31%)
Query: 40 IEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYVMLC 99
+ F DC+D ++ S + ID H + + VS T L+++ L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIMSKDAVSGT-----LRLFWTLL 72
Query: 100 D--------------------VISKWETALREKG--TGKFENNRCVQFIYKNRLY--FRS 135
++S +T R+ T + ++RLY +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-------QRDRLYNDNQV 125
Query: 136 LSKKETDRERL-------LLCYQTNQQVVL 158
+K R + LL + + V++
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 35.6 bits (81), Expect = 0.005
Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 30/170 (17%)
Query: 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDS--NVSGFALFSDDPIDKNLE 74
+++ T I E + ++ + + L +
Sbjct: 27 CFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEI- 85
Query: 75 HYLEPELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFR 134
H+L P++ V + + KY ++ + R
Sbjct: 86 HWLHPQMTVGEVQDKYE------------------------CLHVEAEWRYDLQIRYLPE 121
Query: 135 SLS--KKETDRERLLLCYQTNQQVVLGRFP-LTKELALELAALLSQVCFK 181
KE L Q + +++ +AL+L L + FK
Sbjct: 122 DFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFK 171
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 31.9 bits (72), Expect = 0.090
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 35/159 (22%)
Query: 22 VHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPEL 81
V LL+ + ++ L+ + ++ + + G A D + + +L+
Sbjct: 22 VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA-IWD---NATSKTWLDSAK 77
Query: 82 KVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCVQFIYKNRLYFRSLSKKET 141
++ + P V+F Y ++
Sbjct: 78 EIKKQVRGVPWNFTF-------------------------NVKF------YPPDPAQLTE 106
Query: 142 DRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
D R LC Q Q +V GR P + L + Q
Sbjct: 107 DITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSEL 145
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 32.1 bits (73), Expect = 0.090
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 2 EVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFD----GSTTIEEF 43
+ + + L NP +++PH+I H GA G G + F
Sbjct: 72 DYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRF 117
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 31.0 bits (70), Expect = 0.16
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 132 YFRSLSKKETD-RERLLLCYQTNQQVVLGRFPLTKELALELAALLSQV 178
++ + D + LL Q ++ G P++ + A E A Q+
Sbjct: 4 FYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQI 51
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 31.0 bits (70), Expect = 0.17
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 145 RLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
LL Q ++ G P++ + A E A Q+ F
Sbjct: 29 LNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQF 64
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 30.2 bits (68), Expect = 0.31
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 2 EVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIE 41
+ + + LKN + HS+ H GA G T +
Sbjct: 203 DTVELHLKNHKDSLMVHSVDFH---GATGPGGAAAFTQTD 239
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 30.2 bits (68), Expect = 0.36
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 2 EVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFD----GSTTIEEF 43
+ + + N ++PH++ H G G T+ F
Sbjct: 78 DTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSF 123
>3zxu_A MCM21; cell cycle, COMA complex, protein complex, cell division;
3.70A {Kluyveromyces lactis}
Length = 296
Score = 29.1 bits (64), Expect = 0.67
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 10/108 (9%)
Query: 12 YHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDK 71
+ H+LP I +H + I +F ++ S V F + ++
Sbjct: 173 FKHNLPKYINIHQHWQLITKDTDTSDSNIMKFANLCYKDLLKVHSRVQFFRKLEGNYVND 232
Query: 72 NLEHYLEPEL---KVSQTKGKYPLKIYVML-------CDVISKWETAL 109
L + VS G +KI V C + +L
Sbjct: 233 KQYSLLHIDNMGLNVSFRLGADIIKIKVDDGDDEIIDCTFNGEKNISL 280
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto
reductase family 7, SSA reductase, barrel; HET: FLC NDP;
2.4A {Homo sapiens}
Length = 360
Score = 28.8 bits (65), Expect = 1.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 29 YQVTGFDGSTTIEEFLQTLN 48
+ + D T +EE L
Sbjct: 139 FYLHAPDHGTPVEETLHACQ 158
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 28.7 bits (64), Expect = 1.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 2 EVLSILLKNPYHHSLPHSIPVHLLNGAYQVTGFD----GSTTIEEF 43
+ + + L NP ++L H+I H GA G T F
Sbjct: 79 DYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLRF 124
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto
reductase, succinic semialdehyde oxidoreductase, AKR7
family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 2clp_A* 2c91_A*
Length = 327
Score = 28.4 bits (64), Expect = 1.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 29 YQVTGFDGSTTIEEFLQTLN 48
+ + D T IEE LQ +
Sbjct: 106 FYLHFPDHGTPIEETLQACH 125
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology
domain, pleckst homology domain, C1 domain,
guanine-nucleotide releasing FA metal-binding; 2.73A
{Homo sapiens} PDB: 2d86_A
Length = 587
Score = 28.1 bits (62), Expect = 1.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 6 ILLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDS 56
+LL ++ LPH+I + +N Q++ F I FL T + + S
Sbjct: 44 VLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRS 94
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur
genomics, PSI-2, protein structure initiative, midwest
CENT structural genomics; HET: MLY; 1.80A {Xylella
fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Length = 94
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 35 DGSTTIEEFLQTLNSEIDCRDSN----VSGFALF 64
DG+ IEE + L +E+ + N ++G +
Sbjct: 23 DGTLPIEELREVLGAELPDGEENNYHTLAGMCIS 56
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein
structure initiative, midwest center for structural
genomics, membrane; 1.50A {Streptococcus mutans UA159}
SCOP: d.145.1.4
Length = 87
Score = 26.1 bits (58), Expect = 2.6
Identities = 6/31 (19%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRDSN-VSGFAL 63
G+ T+ +F + ++++ + + ++GF L
Sbjct: 12 VLGTMTLNDFNEYFETDLESDNVDTIAGFYL 42
>3llb_A Uncharacterized protein; protein PA3983, unknown function,
structural genomics, PSI2, MCSG, protein structure
initiative; 1.80A {Pseudomonas aeruginosa}
Length = 83
Score = 25.6 bits (57), Expect = 3.7
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSN-VSGFAL 63
+G + V T ++ F SE + + V G +
Sbjct: 8 SGDFIV---KALTPVDAFNDFFGSEFSDEEFDTVGGLVM 43
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2,
structural genomics, Pro structure initiative; 1.70A
{Neisseria meningitidis} SCOP: d.145.1.4
Length = 91
Score = 25.6 bits (57), Expect = 3.7
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSN-VSGF 61
+ +++ +T IE+ +E +++ + G
Sbjct: 17 SERWRI---HAATEIEDINTFFGTEYSSEEADTIGGL 50
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural
genomics, PSI-2, protein structure initiative; 2.55A
{Neisseria meningitidis} SCOP: d.145.1.4
Length = 92
Score = 25.9 bits (58), Expect = 3.8
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 35 DGSTTIEEFLQTLNSEIDCRDSN---VSGFAL 63
+G+ E LN D++ V+G +
Sbjct: 22 EGALEYVELAPQLNLPQQEEDADFHTVAGLIM 53
>2l1a_A Formin-C, @; fruiting BODY formation, actin binding protein; NMR
{Dictyostelium discoideum}
Length = 107
Score = 25.9 bits (56), Expect = 4.4
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYPLK 93
FDG T +++ ++ L + VS +AL + + + +L PE V K + L+
Sbjct: 39 FDGETAVKDHIKVLLTHFKIPVDKVSSYALQNPFTLAYVEDSFLTPERLVEAEKSYFILR 98
Query: 94 I 94
+
Sbjct: 99 M 99
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element
functions, DNA binding P; 2.00A {Coxiella burnetii}
Length = 104
Score = 25.8 bits (57), Expect = 4.9
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 144 ERLLLCYQTNQQVVLGRFPLTKELALELAALL 175
+ L + ++ G +T + AL LA
Sbjct: 35 KHLAIPTNRVTAILNGARSITADTALRLAKFF 66
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 26.1 bits (57), Expect = 6.5
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 21 PVHLLNGAYQVTGFDGSTTIEEFLQTLNSEID 52
P + G Y + L+ ++ I
Sbjct: 153 PAFAVGGRYMTSPVLAGNDYAGALKVVDQLIV 184
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
protein, JW0472, structural genomics, NPPSFA; 2.25A
{Escherichia coli}
Length = 113
Score = 25.1 bits (55), Expect = 8.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 144 ERLLLCYQTNQQVVLGRFPLTKELALELAALL 175
E L + + ++ LT E+A LA +
Sbjct: 32 ELLHVHRNSVSALINNNRKLTTEMAFRLAKVF 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,740,648
Number of extensions: 149529
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 42
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)