RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5112
(184 letters)
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 48.7 bits (116), Expect = 8e-09
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 18/92 (19%)
Query: 17 PHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHY 76
PH + V+ +GA + T + L + L P LE
Sbjct: 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE--TWGLVECHP-HLALERG 65
Query: 77 LEPELKVSQTKGKYPLKIYVMLCDVISKWETA 108
LE V +V + W
Sbjct: 66 LEDHESV---------------VEVQAAWPVG 82
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 43.0 bits (101), Expect = 2e-06
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 130 RLYFRSLSKKETDRERLLLCY-QTNQQVVLGRFPLTKELALELAALLSQVCF 180
+ ++ + D +L L Y Q ++ G P++ + A E A Q+ F
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQF 53
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 38.7 bits (90), Expect = 5e-05
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 142 DRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
+ + L Q +Q++ + E ++ LA+ Q +
Sbjct: 9 EITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKY 47
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 38.3 bits (89), Expect = 6e-05
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 142 DRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCF 180
D R LC Q Q +V GR P + L + Q
Sbjct: 9 DITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSEL 47
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 38.4 bits (89), Expect = 7e-05
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 142 DRERLLLCYQTNQQVVLGRFPLTKELALELAALLSQVCFK 181
D + L Q + ++ E A+ LA+ Q +
Sbjct: 9 DITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYG 48
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine
polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Length = 285
Score = 29.5 bits (66), Expect = 0.21
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 31 VTGFDGSTTIEEFL-----QTLNSEIDCRDSNVSGF--------ALFSDDPIDKNLEHYL 77
VTG D T IE FL Q E G+ + D P + L +
Sbjct: 9 VTGPDSVTEIEAFLNPRMGQPPTPESLTEGGQYYGWSRGINLATSDTEDSPGNNTLPTW- 67
Query: 78 EPELKVSQTKGKYPLKIYVMLCDVISKWE 106
S K + P+ + CD + WE
Sbjct: 68 ------SMAKLQLPMLNEDLTCDTLQMWE 90
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 28.2 bits (61), Expect = 0.58
Identities = 11/65 (16%), Positives = 19/65 (29%)
Query: 32 TGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYP 91
G+ GS + L+ N + DS V +N+ L+
Sbjct: 11 AGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRY 70
Query: 92 LKIYV 96
+ V
Sbjct: 71 AALEV 75
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
Sv40 [TaxId: 10633]}
Length = 348
Score = 27.1 bits (60), Expect = 1.3
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 17 PHSIPVHLLNGAYQV----TGFDGSTTIEEFLQTLNSEIDCRDSNVSGF--------ALF 64
P +P ++ G +V TG D T +E F LN ++ D + G
Sbjct: 7 PVQVPKLVIKGGIEVLGVKTGVDSFTEVECF---LNPQMGNPDEHQKGLSKSLAAEKQFT 63
Query: 65 SDDPIDKNLEHYLEPELKVSQTKGKYPLKIYVMLCDVISKWE 106
D P + L Y S + P + C I WE
Sbjct: 64 DDSPDKEQLPCY-------SVARIPLPNINEDLTCGNILMWE 98
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 27.2 bits (59), Expect = 1.3
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 22 VHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPEL 81
V L+ G TG DGS E L+ E+ S F + + KN + ++E +
Sbjct: 3 VALITGI---TGQDGSYLAEFLLE-KGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNM 58
Query: 82 KV 83
K+
Sbjct: 59 KL 60
>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 100
Score = 25.5 bits (56), Expect = 1.7
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 26 NGAYQVTGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQ 85
+ +T + +Q + + NV+ + L + + H+L ++ VS
Sbjct: 20 TTWASIIRHGDATDVRGIIQKIVDCH--KVKNVACYGLRLSHLQSEEV-HWLHLDMGVSN 76
Query: 86 TKGKYPLKIYVMLCDVISKWETALR 110
+ K+ L +W+ LR
Sbjct: 77 VREKFELA------HPPEEWKYELR 95
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 305
Score = 26.0 bits (57), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 60 GFALFSDDPID--KNLEHYLEPELKVSQTKGKYPL 92
F + +DD I +N+++YLE ELKV Q Y
Sbjct: 138 NFYIHNDDYIKFLENMDYYLEQELKVEQEGNVYSC 172
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 26.1 bits (55), Expect = 3.3
Identities = 11/74 (14%), Positives = 24/74 (32%)
Query: 32 TGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKVSQTKGKYP 91
GF G+ E L+ + E+ D + F + P +E + + + K
Sbjct: 9 NGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKC 68
Query: 92 LKIYVMLCDVISKW 105
+ ++
Sbjct: 69 DVVLPLVAIATPIE 82
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700
{Enterococcus faecalis [TaxId: 1351]}
Length = 84
Score = 24.2 bits (53), Expect = 3.9
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRD-SNVSGFAL 63
G I+EF + +++ D ++G+ +
Sbjct: 13 VQGRMLIDEFNEVFETDLHMSDVDTMAGYLI 43
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein
Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId:
1718]}
Length = 98
Score = 24.8 bits (54), Expect = 4.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRD-SNVSGFAL 63
DG T ++E + + E+ D +SG
Sbjct: 13 IDGDTPLDEVERAIGYELPEGDYETISGLLF 43
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537
{Neisseria meningitidis [TaxId: 487]}
Length = 84
Score = 24.3 bits (53), Expect = 5.0
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRDSN-VSGFAL 63
+T IE+ +E +++ + G +
Sbjct: 15 IHAATEIEDINTFFGTEYSSEEADTIGGLVI 45
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 25.2 bits (54), Expect = 5.4
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 12/103 (11%)
Query: 64 FSDDPIDKNLEHYLEPELKVSQTKGKYPLKIYVMLCDVISKWETALREKGTGKFENNRCV 123
+ +E + L + +PL ++ L + I +G + N V
Sbjct: 130 HYVEMYKDWVERGRKLILNLYH----WPLPLW--LHNPIMVRRMGPDRAPSG-WLNEESV 182
Query: 124 QFIYKN-RLYFRSLSKKETDRERLLLCYQTNQQVVLGRFPLTK 165
K + + + V + K
Sbjct: 183 VEFAKYAAYIAWKMG----ELPVMWSTMNEPNVVYEQGYMFVK 221
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria
meningitidis [TaxId: 487]}
Length = 76
Score = 23.9 bits (52), Expect = 5.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 35 DGSTTIEEFLQTLNSEIDCRDSN---VSGFAL 63
+G+ E LN D++ V+G +
Sbjct: 6 EGALEYVELAPQLNLPQQEEDADFHTVAGLIM 37
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 25.0 bits (53), Expect = 6.6
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 32 TGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLEHYLEPELKV 83
TG DGS E L E+ S F + I + + + +K+
Sbjct: 10 TGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKL 60
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian
clock protein KaiA {Synechococcus elongatus [TaxId:
32046]}
Length = 135
Score = 24.0 bits (52), Expect = 8.0
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 3 VLSI--LLKNPYHHSLPHSIPVHLLNGAYQVTGFDGSTTIEEFLQTLNSEIDC 53
++I +++ ++ L YQ+ + + E+ QT +IDC
Sbjct: 4 QIAICIWVEST---AILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDC 53
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107
{Haemophilus influenzae [TaxId: 727]}
Length = 78
Score = 23.4 bits (51), Expect = 8.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRD-SNVSGFAL 63
DGS + + + N E+D D +G L
Sbjct: 10 IDGSANLRDLNKMFNWELDTEDARTFNGLIL 40
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693
{Streptococcus mutans [TaxId: 1309]}
Length = 84
Score = 23.6 bits (51), Expect = 8.5
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 34 FDGSTTIEEFLQTLNSEIDCRD-SNVSGFAL 63
G+ T+ +F + ++++ + ++GF L
Sbjct: 10 VLGTMTLNDFNEYFETDLESDNVDTIAGFYL 40
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia
coli [TaxId: 562]}
Length = 357
Score = 24.4 bits (52), Expect = 9.8
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 32 TGFDGSTTIEEFLQTLNSEIDCRDSNVSGFALFSDDPIDKNLE 74
TG DGS E L+ E+ S F D I ++
Sbjct: 10 TGQDGSYLAEFLLE-KGYEVHGIKRRASSFNTERVDHIYQDPH 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,770
Number of extensions: 29694
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 25
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)